Psyllid ID: psy1169

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCSC
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEccccccHHHHHHHHHHcccccccccccEEEEcEEEEEEccEEEEEEEEEccccccHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHcccccHHccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mktmsssgqysySYIFKYIIIGDMGVGKSCLLHQfteqkfmpdcphtigveFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWltdtknltnpntVIFLIGNkmdlegsrdvRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIkdgklnanmtesgvqhkerggpaslgdssssdkpncsc
Flexible Loop (DISEMBL)
mktmsssgqySYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSwltdtknltnpNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHkerggpaslgdssssdkpncsc
Low Complexity Region (SEG)
MKTMSSSGQysysyifkyiiiGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCSC
Disordered region (IsUnstruct)
*********YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI**************************************
Disordered Region (DISOPRED)
************SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ************************************NCSC
Disordered Region (DISEMBL)
********QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTE***************************
Disordered Region (DISPRO)
*********YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q5R8Z8	215	Ras-related protein Rab-1	yes	N/A	0.967	0.981	0.773	3e-95
Q91V41	215	Ras-related protein Rab-1	yes	N/A	0.967	0.981	0.773	3e-95
P61106	215	Ras-related protein Rab-1	yes	N/A	0.967	0.981	0.773	3e-95
Q5ZKU5	215	Ras-related protein Rab-1	yes	N/A	0.967	0.981	0.773	3e-95
P61107	215	Ras-related protein Rab-1	yes	N/A	0.949	0.962	0.787	4e-95
Q52NJ6	215	Ras-related protein Rab-1	yes	N/A	0.949	0.962	0.787	4e-95
P36410	206	Ras-related protein Rab-1	yes	N/A	0.935	0.990	0.688	1e-82
Q68EK7	213	Ras-related protein Rab-4	no	N/A	0.935	0.957	0.560	2e-67
Q05975	212	Ras-related protein Rab-2	N/A	N/A	0.889	0.915	0.608	2e-66
P61018	213	Ras-related protein Rab-4	no	N/A	0.876	0.896	0.589	4e-66

>sp|Q5R8Z8|RAB14_PONAB Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3

 Score =  347 bits (891), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/216 (77%), Positives = 181/216 (83%), Gaps = 5/216 (2%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI L
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE  RDV Y+EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L
Sbjct: 122 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181

Query: 186 NANMTESGVQHK---ERGGPASLGDSSSSDKPNCSC 218
           + N  ESGVQHK    +GG   L       +  C C
Sbjct: 182 DLNAAESGVQHKPSAPQGG--RLTSEPQPQREGCGC 215

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.
Pongo abelii (taxid: 9601)

>sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3

 Score =  347 bits (891), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/216 (77%), Positives = 181/216 (83%), Gaps = 5/216 (2%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI L
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE  RDV Y+EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L
Sbjct: 122 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181

Query: 186 NANMTESGVQHK---ERGGPASLGDSSSSDKPNCSC 218
           + N  ESGVQHK    +GG   L       +  C C
Sbjct: 182 DLNAAESGVQHKPSAPQGG--RLTSEPQPQREGCGC 215

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.

Mus musculus (taxid: 10090)

>sp|P61106|RAB14_HUMAN Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4

 Score =  347 bits (891), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/216 (77%), Positives = 181/216 (83%), Gaps = 5/216 (2%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI L
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE  RDV Y+EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L
Sbjct: 122 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181

Query: 186 NANMTESGVQHK---ERGGPASLGDSSSSDKPNCSC 218
           + N  ESGVQHK    +GG   L       +  C C
Sbjct: 182 DLNAAESGVQHKPSAPQGG--RLTSEPQPQREGCGC 215

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.

Homo sapiens (taxid: 9606)

>sp|Q5ZKU5|RAB14_CHICK Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3

 Score =  347 bits (891), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/216 (77%), Positives = 181/216 (83%), Gaps = 5/216 (2%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI L
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE  RDV Y+EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L
Sbjct: 122 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL 181

Query: 186 NANMTESGVQHK---ERGGPASLGDSSSSDKPNCSC 218
           + N  ESGVQHK    +GG   L       +  C C
Sbjct: 182 DLNAAESGVQHKPSAPQGG--RLTSEPQPQREGCGC 215

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development.

Gallus gallus (taxid: 9031)

>sp|P61107|RAB14_RAT Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=1 SV=3

 Score =  347 bits (889), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 167/212 (78%), Positives = 179/212 (84%), Gaps = 5/212 (2%)

Query: 10  YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 69
           Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIW
Sbjct: 6   YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 65

Query: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
           DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK
Sbjct: 66  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK 125

Query: 130 MDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANM 189
            DLE  RDV Y+EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N 
Sbjct: 126 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNA 185

Query: 190 TESGVQHK---ERGGPASLGDSSSSDKPNCSC 218
            ESGVQHK    +GG   L       +  C C
Sbjct: 186 AESGVQHKPSAPQGG--RLTSEPQPQREGCGC 215

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q52NJ6|RAB14_PIG Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3

 Score =  347 bits (889), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 167/212 (78%), Positives = 179/212 (84%), Gaps = 5/212 (2%)

Query: 10  YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 69
           Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIW
Sbjct: 6   YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 65

Query: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
           DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK
Sbjct: 66  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK 125

Query: 130 MDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANM 189
            DLE  RDV Y+EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N 
Sbjct: 126 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNA 185

Query: 190 TESGVQHK---ERGGPASLGDSSSSDKPNCSC 218
            ESGVQHK    +GG   L       +  C C
Sbjct: 186 AESGVQHKPSAPQGG--RLTSEPQPQREGCGC 215

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.

Sus scrofa (taxid: 9823)

>sp|P36410|RAB14_DICDI Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2

 Score =  305 bits (782), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 144/209 (68%), Positives = 172/209 (82%), Gaps = 5/209 (2%)

Query: 10  YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 69
           + Y YIFKYIIIGDMGVGKSCLLHQFTE KF+PD PHTIGVEFGTRI++V+ +KIKLQIW
Sbjct: 3   FPYEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIW 62

Query: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
           DTAGQERFRAVTRSYYRGAAGAL+VYDITRR TYNHL++WLTD +NLTNPNTVI LIGNK
Sbjct: 63  DTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNK 122

Query: 130 MDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANM 189
            DLEG RDV Y+EA  FA++N LIFVE+SA TGENVE+AFL TAK I+Q++++G ++  +
Sbjct: 123 KDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDL-I 181

Query: 190 TESGVQHKERGGPASLGDSSSSDKPNCSC 218
            + G+    +  P ++ D    D   CSC
Sbjct: 182 PDGGIT---KNPPQTITD-KPQDASKCSC 206

Regulates the fusion of phagosomes and lysosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|Q68EK7|RAB4B_DANRE Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1

 Score =  255 bits (651), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/214 (56%), Positives = 157/214 (73%), Gaps = 10/214 (4%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +Y ++FK+++IG  G GKSCLLHQF E KF  D  HTIGVEFG+R++ V G+ +KLQIWD
Sbjct: 4   TYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWD 63

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQERFR+VTRSYYRGAAGAL+VYDIT R TYN L++WLTD + L +PN VI L GNK 
Sbjct: 64  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKK 123

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           DL+  R+V + EA +FA+EN+L+F+E SA+TGENVE+AFL+ A+ I   I+ G+L+    
Sbjct: 124 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSIPNKIESGELDPERM 183

Query: 191 ESGVQHKERGGPASLGD------SSSSDKPNCSC 218
            SG+Q+    G ASL        S++  K  C+C
Sbjct: 184 GSGIQY----GDASLRQIRQPRGSAAQTKQQCNC 213

Protein transport. Probably involved in vesicular traffic.

Danio rerio (taxid: 7955)

>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1

 Score =  251 bits (642), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/194 (60%), Positives = 150/194 (77%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           SY+Y+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R+I + G++IKLQIWD
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 61

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL++WL D +  +N N VI LIGNK 
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 121

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           DLE  R+V+ +E + FA E+ LIF+E SA T  NVE+AF+ TAK+IYQ I+DG  + N  
Sbjct: 122 DLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNE 181

Query: 191 ESGVQHKERGGPAS 204
            +G++   +  PAS
Sbjct: 182 ANGIKIGPQHSPAS 195

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Lymnaea stagnalis (taxid: 6523)

>sp|P61018|RAB4B_HUMAN Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1

 Score =  251 bits (640), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 149/195 (76%), Gaps = 4/195 (2%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +Y ++FK+++IG  G GKSCLLHQF E KF  D  HTIGVEFG+R++ V G+ +KLQIWD
Sbjct: 4   TYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWD 63

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQERFR+VTRSYYRGAAGAL+VYDIT R TYN L++WLTD + L +PN V+ L GNK 
Sbjct: 64  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKK 123

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           DL+  R+V + EA +FA+EN+L+F+E SA+TGENVE+AFL+ A+ I   I  G+L+    
Sbjct: 124 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERM 183

Query: 191 ESGVQHKERGGPASL 205
            SG+Q+    G ASL
Sbjct: 184 GSGIQY----GDASL 194

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
237820631	215	Rab-protein 14 [Tribolium castaneum]	0.977	0.990	0.803	3e-98
346469761	215	hypothetical protein [Amblyomma maculatu	0.977	0.990	0.799	3e-97
301299077	217	Rab14 [Aiptasia pulchella]	0.986	0.990	0.792	6e-97
427787413	215	Putative ras-related protein rab-14 [Rhi	0.977	0.990	0.794	7e-97
357612414	213	Rab-protein 14 [Danaus plexippus]	0.958	0.981	0.796	8e-97
170037321	215	GTP-binding protein YPTC4 [Culex quinque	0.977	0.990	0.789	1e-96
157135158	215	ras-related protein Rab, putative [Aedes	0.977	0.990	0.789	1e-96
403183345	239	AAEL013252-PB [Aedes aegypti]	0.977	0.891	0.789	2e-96
156390648	217	predicted protein [Nematostella vectensi	0.986	0.990	0.783	2e-96
321452621	215	hypothetical protein DAPPUDRAFT_231914 [	0.958	0.972	0.779	3e-96

>gi|237820631|ref|NP_001153783.1| Rab-protein 14 [Tribolium castaneum]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 172/214 (80%), Positives = 192/214 (89%), Gaps = 1/214 (0%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           S+G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   SAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT+NLTNP+TVIFL
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLEG RDV Y+EA KFAEEN L+FVEASA TG+NVE+AFLETAKKIYQ+I+DG+L
Sbjct: 122 IGNKCDLEGQRDVTYEEASKFAEENGLMFVEASAKTGDNVEEAFLETAKKIYQSIQDGRL 181

Query: 186 NANMTESGVQHK-ERGGPASLGDSSSSDKPNCSC 218
           + N  ESGVQHK  + G  +L +   ++K NC+C
Sbjct: 182 DLNAAESGVQHKPSQPGRNNLSNDQQANKDNCAC 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346469761|gb|AEO34725.1| hypothetical protein [Amblyomma maculatum]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/214 (79%), Positives = 188/214 (87%), Gaps = 1/214 (0%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           ++G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   TAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVCGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVIFL
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE  RDV YDEAK+FAEEN L+FVEASA TGE+VE+AFLETAKKI+QNI+DG L
Sbjct: 122 IGNKCDLEAQRDVTYDEAKQFAEENGLMFVEASAKTGEHVEEAFLETAKKIFQNIQDGSL 181

Query: 186 NANMTESGVQHKERG-GPASLGDSSSSDKPNCSC 218
           + N  ESGVQHK +     SL   +++DK  C C
Sbjct: 182 DLNAAESGVQHKPQTRTTTSLTSEATTDKEACGC 215

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301299077|gb|ADK66883.1| Rab14 [Aiptasia pulchella]

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 172/217 (79%), Positives = 189/217 (87%), Gaps = 2/217 (0%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           M+++G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 1   MAATGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVAGQK 60

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI
Sbjct: 61  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 120

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
           FLIGNK DL+  RDV Y+EAK+FAEEN L+F EASA TGENVE AFLETAKKIYQNI+DG
Sbjct: 121 FLIGNKSDLDAQRDVTYEEAKQFAEENGLLFCEASAKTGENVEDAFLETAKKIYQNIQDG 180

Query: 184 KLNANMTESGVQHKERGG-PA-SLGDSSSSDKPNCSC 218
            L+ N  ESGVQHK   G PA +L     S++  C+C
Sbjct: 181 SLDLNAAESGVQHKPMTGRPANALNTDQPSNQDRCNC 217

Source: Aiptasia pulchella

Species: Aiptasia pulchella

Genus: Aiptasia

Family: Aiptasiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|427787413|gb|JAA59158.1| Putative ras-related protein rab-14 [Rhipicephalus pulchellus]

 Score =  358 bits (920), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 170/214 (79%), Positives = 188/214 (87%), Gaps = 1/214 (0%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           ++G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   TAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVCGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVIFL
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE  RDV YDEAK+FA+EN L+FVEASA TGE+VE+AFLETAKKI+QNI+DG L
Sbjct: 122 IGNKCDLEAQRDVTYDEAKQFADENGLMFVEASAKTGEHVEEAFLETAKKIFQNIQDGSL 181

Query: 186 NANMTESGVQHKERG-GPASLGDSSSSDKPNCSC 218
           + N  ESGVQHK +     SL   +++DK  C C
Sbjct: 182 DLNAAESGVQHKPQTRTTTSLTSEATTDKEACGC 215

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612414|gb|EHJ67983.1| Rab-protein 14 [Danaus plexippus]

 Score =  358 bits (919), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 172/216 (79%), Positives = 191/216 (88%), Gaps = 7/216 (3%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           SSG Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   SSGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVAGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT+NLTNP+TVIFL
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DL+G RDV Y+EAK+FA+EN L+FVEASA TG+NVE+AFLETAKKIYQ+I+DG+L
Sbjct: 122 IGNKSDLDGQRDVTYEEAKQFADENGLMFVEASAKTGQNVEEAFLETAKKIYQSIQDGRL 181

Query: 186 NANMTESGVQHKERGGPASLGD---SSSSDKPNCSC 218
           + N  ESGVQHK    PAS G    +  +   NC+C
Sbjct: 182 DLNAAESGVQHK----PASTGRPLAAPPAKNDNCAC 213

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037321|ref|XP_001846507.1| GTP-binding protein YPTC4 [Culex quinquefasciatus] gi|167880416|gb|EDS43799.1| GTP-binding protein YPTC4 [Culex quinquefasciatus]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/214 (78%), Positives = 192/214 (89%), Gaps = 1/214 (0%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           S+G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM  CPHTIGVEFGTRIIEV  +KIK
Sbjct: 2   SAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMASCPHTIGVEFGTRIIEVDKQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT+NLTNP+TVIFL
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE +R+V Y+EAKKFA+EN L+F EASAMTG+NVE+AFLETA+KIYQ+I+DG+L
Sbjct: 122 IGNKSDLESTREVTYEEAKKFADENGLMFAEASAMTGQNVEEAFLETARKIYQSIQDGRL 181

Query: 186 NANMTESGVQHKE-RGGPASLGDSSSSDKPNCSC 218
           + N +ESGVQHK  + G  SL   + ++K NCSC
Sbjct: 182 DLNSSESGVQHKPAQPGRTSLTSDAQNNKDNCSC 215

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157135158|ref|XP_001656549.1| ras-related protein Rab, putative [Aedes aegypti] gi|108870279|gb|EAT34504.1| AAEL013252-PC [Aedes aegypti]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/214 (78%), Positives = 192/214 (89%), Gaps = 1/214 (0%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           S+G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM  CPHTIGVEFGTRIIEV  +KIK
Sbjct: 2   SAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMASCPHTIGVEFGTRIIEVDKQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT+NLTNP+TVIFL
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE +R+V Y+EAKKFA+EN L+F EASAMTG+NVE+AFLETA+KIYQ+I+DG+L
Sbjct: 122 IGNKSDLESTREVTYEEAKKFADENGLMFAEASAMTGQNVEEAFLETARKIYQSIQDGRL 181

Query: 186 NANMTESGVQHKE-RGGPASLGDSSSSDKPNCSC 218
           + N +ESGVQHK  + G  SL   + ++K NCSC
Sbjct: 182 DLNSSESGVQHKPAQPGRTSLSGDAQNNKDNCSC 215

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403183345|gb|EAT34505.2| AAEL013252-PB [Aedes aegypti]

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/214 (78%), Positives = 192/214 (89%), Gaps = 1/214 (0%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           S+G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM  CPHTIGVEFGTRIIEV  +KIK
Sbjct: 26  SAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMASCPHTIGVEFGTRIIEVDKQKIK 85

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT+NLTNP+TVIFL
Sbjct: 86  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFL 145

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE +R+V Y+EAKKFA+EN L+F EASAMTG+NVE+AFLETA+KIYQ+I+DG+L
Sbjct: 146 IGNKSDLESTREVTYEEAKKFADENGLMFAEASAMTGQNVEEAFLETARKIYQSIQDGRL 205

Query: 186 NANMTESGVQHKE-RGGPASLGDSSSSDKPNCSC 218
           + N +ESGVQHK  + G  SL   + ++K NCSC
Sbjct: 206 DLNSSESGVQHKPAQPGRTSLSGDAQNNKDNCSC 239

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156390648|ref|XP_001635382.1| predicted protein [Nematostella vectensis] gi|156222475|gb|EDO43319.1| predicted protein [Nematostella vectensis]

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/217 (78%), Positives = 186/217 (85%), Gaps = 2/217 (0%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           M+++G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 1   MAATGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 60

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI
Sbjct: 61  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 120

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
           FLIGNK DL+  RDV Y+EAK+FAEEN L+F EASA TGENVE AFLETAKKIYQNI+DG
Sbjct: 121 FLIGNKSDLDAQRDVTYEEAKQFAEENGLLFCEASAKTGENVEDAFLETAKKIYQNIQDG 180

Query: 184 KLNANMTESGVQHKERGGPA--SLGDSSSSDKPNCSC 218
            L+ N  ESGVQHK   G    +L      ++  CSC
Sbjct: 181 SLDLNAAESGVQHKPLTGRPQNALNTDQQPNQDKCSC 217

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|321452621|gb|EFX63965.1| hypothetical protein DAPPUDRAFT_231914 [Daphnia pulex]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/218 (77%), Positives = 187/218 (85%), Gaps = 9/218 (4%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           S+G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   SAGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVAGQKIK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFRAVTRSYYRGAAGAL+VYDITRRSTYNHLSSWL+D +NLTNPNTVIFL
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRSTYNHLSSWLSDARNLTNPNTVIFL 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           IGNK DLE  RDV Y+EAK+FAEEN+L+F+EASA TG+NVE AFLETAKKIYQNI+DG L
Sbjct: 122 IGNKSDLEAQRDVTYEEAKQFAEENELLFIEASAKTGDNVEDAFLETAKKIYQNIQDGSL 181

Query: 186 NANMTESGVQHKERGGPASLGDSSSSDKPN-----CSC 218
           + N  ESGVQHK    P   G S   + PN     C+C
Sbjct: 182 DLNAAESGVQHK----PLQPGRSQPQNTPNPTKEGCAC 215

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
ZFIN|ZDB-GENE-030826-20	215	rab14 "RAB14, member RAS oncog	0.894	0.906	0.785	6.6e-81
FB|FBgn0015791	239	Rab14 "Rab14" [Drosophila mela	0.903	0.824	0.767	2.2e-80
UNIPROTKB|Q5ZKU5	215	RAB14 "Ras-related protein Rab	0.894	0.906	0.785	7.6e-80
UNIPROTKB|Q3ZBG1	215	RAB14 "Uncharacterized protein	0.894	0.906	0.785	7.6e-80
UNIPROTKB|E2R0K4	215	RAB14 "Uncharacterized protein	0.894	0.906	0.785	7.6e-80
UNIPROTKB|P61106	215	RAB14 "Ras-related protein Rab	0.894	0.906	0.785	7.6e-80
UNIPROTKB|F2Z5N8	215	RAB14 "Ras-related protein Rab	0.894	0.906	0.785	7.6e-80
UNIPROTKB|Q52NJ6	215	RAB14 "Ras-related protein Rab	0.894	0.906	0.785	7.6e-80
UNIPROTKB|Q5R8Z8	215	RAB14 "Ras-related protein Rab	0.894	0.906	0.785	7.6e-80
MGI|MGI:1915615	215	Rab14 "RAB14, member RAS oncog	0.894	0.906	0.785	7.6e-80

ZFIN|ZDB-GENE-030826-20 rab14 "RAB14, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 157/200 (78%), Positives = 169/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K+KLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKVKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKE--- 198
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPTAP 197

Query:   199 RGGPASLGDSSSSDKPNCSC 218
             +GG   L   +   K  CSC
Sbjct:   198 QGG--RLSSDAQPQKEGCSC 215

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0015791 Rab14 "Rab14" [Drosophila melanogaster (taxid:7227)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 152/198 (76%), Positives = 176/198 (88%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM +CPHTIGVEFGTRIIEV  +KIKLQIWDTAGQERFRAVT
Sbjct:    42 GDMGVGKSCLLHQFTEKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQERFRAVT 101

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTDT+NLTNP+TVIFLIGNK DLE +R+V Y+
Sbjct:   102 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLESTREVTYE 161

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHK-ERG 200
             EAK+FA+EN L+F+EASAMTG+NVE+AFLETA+KIYQNI++G+L+ N +ESGVQH+  + 
Sbjct:   162 EAKEFADENGLMFLEASAMTGQNVEEAFLETARKIYQNIQEGRLDLNASESGVQHRPSQP 221

Query:   201 GPASLGDSSSSDKPNCSC 218
                SL   ++  K  CSC
Sbjct:   222 SRTSLSSEATGAKDQCSC 239

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

UNIPROTKB|Q5ZKU5 RAB14 "Ras-related protein Rab-14" [Gallus gallus (taxid:9031)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/200 (78%), Positives = 168/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKP-SA 196

Query:   202 PASLGDSSSSDKPN---CSC 218
             P   G  +S  +P    C C
Sbjct:   197 PQG-GRLTSEPQPQREGCGC 215

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0009790 "embryo development" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0006895 "Golgi to endosome transport" evidence=ISS

UNIPROTKB|Q3ZBG1 RAB14 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/200 (78%), Positives = 168/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKP-SA 196

Query:   202 PASLGDSSSSDKPN---CSC 218
             P   G  +S  +P    C C
Sbjct:   197 PQG-GRLTSEPQPQREGCGC 215

GO:0055037 "recycling endosome" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E2R0K4 RAB14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/200 (78%), Positives = 168/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKP-SA 196

Query:   202 PASLGDSSSSDKPN---CSC 218
             P   G  +S  +P    C C
Sbjct:   197 PQG-GRLTSEPQPQREGCGC 215

GO:0055037 "recycling endosome" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61106 RAB14 "Ras-related protein Rab-14" [Homo sapiens (taxid:9606)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/200 (78%), Positives = 168/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKP-SA 196

Query:   202 PASLGDSSSSDKPN---CSC 218
             P   G  +S  +P    C C
Sbjct:   197 PQG-GRLTSEPQPQREGCGC 215

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005769 "early endosome" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005791 "rough endoplasmic reticulum" evidence=ISS

GO:0030140 "trans-Golgi network transport vesicle" evidence=ISS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0046907 "intracellular transport" evidence=NAS

GO:0006895 "Golgi to endosome transport" evidence=ISS;TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0003924 "GTPase activity" evidence=IDA;NAS

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0032456 "endocytic recycling" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA;NAS

UNIPROTKB|F2Z5N8 RAB14 "Ras-related protein Rab-14" [Sus scrofa (taxid:9823)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/200 (78%), Positives = 168/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKP-SA 196

Query:   202 PASLGDSSSSDKPN---CSC 218
             P   G  +S  +P    C C
Sbjct:   197 PQG-GRLTSEPQPQREGCGC 215

GO:0055037 "recycling endosome" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q52NJ6 RAB14 "Ras-related protein Rab-14" [Sus scrofa (taxid:9823)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/200 (78%), Positives = 168/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKP-SA 196

Query:   202 PASLGDSSSSDKPN---CSC 218
             P   G  +S  +P    C C
Sbjct:   197 PQG-GRLTSEPQPQREGCGC 215

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0032456 "endocytic recycling" evidence=ISS

GO:0006895 "Golgi to endosome transport" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0031901 "early endosome membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q5R8Z8 RAB14 "Ras-related protein Rab-14" [Pongo abelii (taxid:9601)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/200 (78%), Positives = 168/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKP-SA 196

Query:   202 PASLGDSSSSDKPN---CSC 218
             P   G  +S  +P    C C
Sbjct:   197 PQG-GRLTSEPQPQREGCGC 215

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0006895 "Golgi to endosome transport" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0032456 "endocytic recycling" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

MGI|MGI:1915615 Rab14 "RAB14, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/200 (78%), Positives = 168/200 (84%)

Query:    22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:    82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct:    78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 137

Query:   142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
             EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+DG L+ N  ESGVQHK    
Sbjct:   138 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKP-SA 196

Query:   202 PASLGDSSSSDKPN---CSC 218
             P   G  +S  +P    C C
Sbjct:   197 PQG-GRLTSEPQPQREGCGC 215

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007589 "body fluid secretion" evidence=ISO

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0019003 "GDP binding" evidence=ISO

GO:0030133 "transport vesicle" evidence=ISO

GO:0030140 "trans-Golgi network transport vesicle" evidence=ISO

GO:0032456 "endocytic recycling" evidence=ISO

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" evidence=ISO

GO:0045176 "apical protein localization" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0055037 "recycling endosome" evidence=ISO

GO:0097208 "alveolar lamellar body" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05975	RAB2_LYMST	No assigned EC number	0.6082	0.8899	0.9150	N/A	N/A
P51146	RAB4B_RAT	No assigned EC number	0.5967	0.8532	0.8732	no	N/A
Q91V41	RAB14_MOUSE	No assigned EC number	0.7731	0.9678	0.9813	yes	N/A
O23561	RAB1A_ARATH	No assigned EC number	0.5480	0.9311	0.9902	no	N/A
P61106	RAB14_HUMAN	No assigned EC number	0.7731	0.9678	0.9813	yes	N/A
P61107	RAB14_RAT	No assigned EC number	0.7877	0.9495	0.9627	yes	N/A
P61105	RAB2A_CANFA	No assigned EC number	0.6054	0.8486	0.8726	no	N/A
P49104	RAB2B_MAIZE	No assigned EC number	0.6	0.8486	0.8809	N/A	N/A
P49103	RAB2A_MAIZE	No assigned EC number	0.6	0.8486	0.8851	N/A	N/A
P92963	RAB1C_ARATH	No assigned EC number	0.5673	0.9449	0.9763	no	N/A
Q5R8Z8	RAB14_PONAB	No assigned EC number	0.7731	0.9678	0.9813	yes	N/A
P05714	RAB4A_RAT	No assigned EC number	0.6021	0.8532	0.8532	no	N/A
P05712	RAB2A_RAT	No assigned EC number	0.6	0.8486	0.8726	no	N/A
Q68EK7	RAB4B_DANRE	No assigned EC number	0.5607	0.9357	0.9577	no	N/A
Q38922	RAB1B_ARATH	No assigned EC number	0.5817	0.9449	0.9763	yes	N/A
Q01971	RAB2A_RABIT	No assigned EC number	0.6054	0.8486	0.8726	no	N/A
Q90965	RAB2A_CHICK	No assigned EC number	0.6054	0.8486	0.8726	no	N/A
Q4R4X6	RAB2A_MACFA	No assigned EC number	0.6054	0.8486	0.8726	N/A	N/A
P36410	RAB14_DICDI	No assigned EC number	0.6889	0.9357	0.9902	yes	N/A
P56371	RAB4A_MOUSE	No assigned EC number	0.5967	0.8532	0.8532	no	N/A
Q5ZKU5	RAB14_CHICK	No assigned EC number	0.7731	0.9678	0.9813	yes	N/A
P61018	RAB4B_HUMAN	No assigned EC number	0.5897	0.8761	0.8967	no	N/A
P61019	RAB2A_HUMAN	No assigned EC number	0.6054	0.8486	0.8726	no	N/A
Q8WUD1	RAB2B_HUMAN	No assigned EC number	0.5721	0.9174	0.9259	no	N/A
Q6PHI9	RAB4A_DANRE	No assigned EC number	0.5794	0.8761	0.8967	no	N/A
P36863	YPTV4_VOLCA	No assigned EC number	0.5545	0.9541	0.9765	N/A	N/A
P61017	RAB4B_CANFA	No assigned EC number	0.5897	0.8761	0.8967	no	N/A
Q5R6B6	RAB2A_PONAB	No assigned EC number	0.6054	0.8486	0.8726	no	N/A
P38555	YPT31_YEAST	No assigned EC number	0.4637	0.9357	0.9147	yes	N/A
Q2TBH7	RAB4A_BOVIN	No assigned EC number	0.6021	0.8532	0.8532	no	N/A
P59279	RAB2B_MOUSE	No assigned EC number	0.5420	0.9541	0.9629	no	N/A
Q52NJ6	RAB14_PIG	No assigned EC number	0.7877	0.9495	0.9627	yes	N/A
Q39570	YPTC4_CHLRE	No assigned EC number	0.6010	0.8853	0.9061	N/A	N/A
Q91ZR1	RAB4B_MOUSE	No assigned EC number	0.5967	0.8532	0.8732	no	N/A
P53994	RAB2A_MOUSE	No assigned EC number	0.6054	0.8486	0.8726	no	N/A
P20338	RAB4A_HUMAN	No assigned EC number	0.5607	0.9357	0.9357	no	N/A
P36409	RAB2A_DICDI	No assigned EC number	0.5555	0.9357	0.9855	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-124
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-96
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-95
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-91
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-91
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	7e-87
pfam00071	162	pfam00071, Ras, Ras family	1e-83
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	9e-83
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-68
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-67
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-66
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-64
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-64
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-62
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-62
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-55
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-52
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-51
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-51
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-49
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-46
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-45
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-45
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-45
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-45
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-44
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-44
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-42
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-42
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-39
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-37
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	4e-37
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-36
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-34
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-33
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-33
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-33
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-33
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-33
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	9e-32
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-30
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-29
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-29
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-29
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-27
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	8e-27
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-26
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-26
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-25
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-24
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-24
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-23
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-23
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	5e-23
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	5e-23
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-22
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-22
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-22
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-22
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-21
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-20
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-20
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-19
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-19
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-18
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-18
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	7e-18
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	8e-17
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-16
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	6e-16
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-15
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-15
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	9e-14
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-13
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	6e-13
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	6e-13
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-12
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-12
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-12
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-11
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	9e-10
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-09
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-09
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-09
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	5e-09
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	9e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-08
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-08
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	4e-08
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	5e-08
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	6e-08
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	8e-07
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	2e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	8e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	6e-05
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	6e-04
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	7e-04
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	0.001
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.002
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.002
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.003

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  347 bits (893), Expect = e-124
 Identities = 147/166 (88%), Positives = 156/166 (93%)

Query: 14  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73
           YIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV+G+KIKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
           QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVIFLIGNK DLE
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
             RDV Y+EAK+FA+EN L+F+E SA TGENVE AFLETAKKIYQN
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  276 bits (709), Expect = 4e-96
 Identities = 109/168 (64%), Positives = 133/168 (79%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           Y+Y+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R+I + G++IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL D +  +N N  I LIGNK D
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           LE  R+V Y+E + FA E+ LIF+E SA T  NVE+AF+ TAK+IY  
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  274 bits (704), Expect = 3e-95
 Identities = 93/164 (56%), Positives = 119/164 (72%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK I+IGD GVGKS LL +FT+ KF      TIGV+F T+ IEV G+++KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           RFR++T SYYRGA GAL+VYDIT R ++ +L +WL + +   +PN VI L+GNK DLE  
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           R V  +EA+ FAEE+ L F E SA T  NVE+AF E A++I + 
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  263 bits (675), Expect = 4e-91
 Identities = 104/161 (64%), Positives = 131/161 (81%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK++IIG  G GKSCLLHQF E KF  D  HTIGVEFG+R++ V G+ +KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           RFR+VTRSYYRGAAGAL+VYDIT R ++N L++WLTD + L +P+ VI L+GNK DLE  
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R+V + EA +FA+EN L+F+E SA+TGENVE+AFL+ A+ I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  265 bits (679), Expect = 5e-91
 Identities = 117/208 (56%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           SY+Y+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R+I +  + IKLQIWD
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL D +   N N  I LIGNK 
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           DL   R V  +E ++FA+E+ LIF+EASA T +NVE+AF++TA KIY+ I+DG  + +  
Sbjct: 122 DLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNE 181

Query: 191 ESGVQ--HKERGGPASLGDSSSSDKPNC 216
             G++  +    G +   D +SS    C
Sbjct: 182 SYGIKVGYGAIPGASGGRDGTSSQGGGC 209

Length = 210

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  253 bits (648), Expect = 7e-87
 Identities = 87/159 (54%), Positives = 116/159 (72%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK ++IGD GVGK+ LL +F + KF  +   TIGV+F ++ IEV G+K+KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           RFR++T SYYRGA GA++VYD+T R ++ +L  WL + K    PN  I L+GNK DLE  
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174
           R V  +EA++FA+EN L+F E SA TGENV++AF   A+
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  245 bits (627), Expect = 1e-83
 Identities = 83/162 (51%), Positives = 110/162 (67%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD GVGKS LL +FT+ KF  +   TIGV+F T+ IEV G+ +KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136
           FRA+   YYRGA G L+VYDIT R ++ ++  WL +     + N  I L+GNK DLE  R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            V  +E +  A+E  L F+E SA T ENVE+AF E A++I +
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  242 bits (621), Expect = 9e-83
 Identities = 90/164 (54%), Positives = 119/164 (72%)

Query: 14  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73
           Y+FK ++IGD GVGKS LL +FT  +F  D   TIGVEF TR I++ G+ IK QIWDTAG
Sbjct: 2   YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAG 61

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
           QER+RA+T +YYRGA GAL+VYDIT++ST+ ++  WL + ++  + N VI L+GNK DL 
Sbjct: 62  QERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
             R V  +EAK FAE+N L F+E SA+ G NVE+AF +   +IY
Sbjct: 122 HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  205 bits (524), Expect = 6e-68
 Identities = 72/162 (44%), Positives = 106/162 (65%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK +++GD  VGKS ++ +F + +F  +   TIG  F T+ + +    +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           R+R++   YYRGAA A++VYDIT   ++    SW+ + +    PN VI L GNK DLE  
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
           R V  +EA+++A+EN L+F+E SA TGENV + F E A+K+ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  203 bits (518), Expect = 5e-67
 Identities = 79/163 (48%), Positives = 110/163 (67%)

Query: 14  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73
           Y+FK ++IGD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
           QERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
             + V Y EAK+FA+E  + F+E SA    NVE+AF+  A++I
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  200 bits (511), Expect = 5e-66
 Identities = 80/163 (49%), Positives = 108/163 (66%)

Query: 14  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73
           Y+FK ++IGD GVGKSCLL +F+E  F P    TIG++F  R IE+ G+KIKLQIWDTAG
Sbjct: 2   YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAG 61

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
           QERFR +T SYYRGA G ++VYDIT   ++ ++ +W+ +     + +    L+GNK D+E
Sbjct: 62  QERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDME 121

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
             R V  +E +  A E  + F+E SA    NVE+AFL  AK I
Sbjct: 122 EKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  196 bits (501), Expect = 2e-64
 Identities = 82/162 (50%), Positives = 115/162 (70%), Gaps = 2/162 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K ++IGD GVGKS LL +FT+  F  D   TIGV+F  + + V G+K+KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEG 134
           RFR +T SYYRGA G ++VYD+TRR T+++L +WL +     TNP+ V  L+GNK+D E 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKE- 119

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +R+V  +E +KFA +++++F+E SA T   V+QAF E  +KI
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  196 bits (501), Expect = 6e-64
 Identities = 93/211 (44%), Positives = 135/211 (63%), Gaps = 6/211 (2%)

Query: 14  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTA 72
           Y F+ I+IGD  VGKS LL +FTE +F      T+GV+F +R+IE+  G +IKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF-LIGNKMD 131
           GQERFR++TRSYYR + G L+V+DIT R ++ H+  WL + ++   P+  +F L+G+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTE 191
           LE  R V  +EA+K A++  + ++E SA TG+NVE+AF    ++IY+ IK G+L A    
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 192 SGV-QHKERGGPASLGDSSSSDKP---NCSC 218
            GV      G   SL + S +      +C C
Sbjct: 181 DGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  191 bits (488), Expect = 1e-62
 Identities = 76/164 (46%), Positives = 110/164 (67%), Gaps = 1/164 (0%)

Query: 14  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73
           ++FK I+IGD  VGK+C++ +F    F     +TIGV+F  + +E+ G+++KLQIWDTAG
Sbjct: 2   FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAG 61

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
           QERFR +T+SYYR A GA++ YDITRRS++  +  W+ + +     N V+ LIGNK DLE
Sbjct: 62  QERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121

Query: 134 GSRDVRYDEAKKFAEENDLIFV-EASAMTGENVEQAFLETAKKI 176
             R+V ++EA   AE   ++ V E SA    NVE+AFL  A ++
Sbjct: 122 EQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  193 bits (492), Expect = 2e-62
 Identities = 90/213 (42%), Positives = 132/213 (61%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           M+    + Y Y+FK ++IGD GVGKS +L +FT  +F  +   TIGVEF TR ++V G+ 
Sbjct: 1   MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           +K QIWDTAGQER+RA+T +YYRGA GAL+VYDIT+R T++++  WL + ++  + N VI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 120

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
            + GNK DL   R V  ++ +  AE+  L F+E SA+   NVE+AF     +IY  I   
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKK 180

Query: 184 KLNANMTESGVQHKERGGPASLGDSSSSDKPNC 216
            L A    +      +G   ++ D+S ++K  C
Sbjct: 181 ALAAQEAAANSGLPGQGTTINVADTSGNNKRGC 213

Length = 216

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  174 bits (442), Expect = 1e-55
 Identities = 73/165 (44%), Positives = 111/165 (67%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           Y ++FK ++IG+ GVGK+CL+ +FT+  F P    TIGV+F  + +E+ GEKIKLQIWDT
Sbjct: 4   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQERFR++T+SYYR A   ++ YDIT   ++  L  WL + +   N   +  L+GNK+D
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           L   R+V    A++F++  D+ ++E SA   +NVE+ FL+ A ++
Sbjct: 124 LAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  165 bits (419), Expect = 5e-52
 Identities = 61/161 (37%), Positives = 102/161 (63%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K + +GD  VGK+ ++ +F    F      TIG++F ++ + V  + ++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           RFR++  SY R ++ A++VYDIT R ++++   W+ D ++    + +I L+GNK DL   
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R V  +E +K A+EN+ +F+E SA  G NV+Q F + A+ +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  163 bits (416), Expect = 2e-51
 Identities = 63/171 (36%), Positives = 100/171 (58%), Gaps = 5/171 (2%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K II+GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD---TKNLTNPNTVIF-LIGNKMD 131
           RF+++  ++YRGA   ++VYD+T   ++  L SW  +     +  +P    F ++GNK+D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 132 LEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           LE  R V   +A+++ +   ++ + E SA    NV+QAF   A+   +  K
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEK 171

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  163 bits (415), Expect = 4e-51
 Identities = 72/170 (42%), Positives = 117/170 (68%), Gaps = 2/170 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           FK +++GD GVGK+CLL +F +  F+      T+G++F  +++ V G K+KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
           ERFR+VT +YYR A   L++YD+T +S+++++ +WLT+       + VI L+GNK D+ G
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI-YQNIKDG 183
            R V+ ++ ++ A+E  + F+E SA TG NVE AF   AK++ +++++  
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQP 170

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  160 bits (406), Expect = 1e-49
 Identities = 88/177 (49%), Positives = 112/177 (63%), Gaps = 4/177 (2%)

Query: 5   SSSGQYS-YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           SSSGQ S Y   FK ++IGD GVGKS LL  F     + D   TIGV+F  + + V G++
Sbjct: 3   SSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKR 61

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL--TNPNT 121
           +KL IWDTAGQERFR +T SYYR A G ++VYD+TRR T+ +LS        L  TN + 
Sbjct: 62  LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDC 121

Query: 122 VIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           V  L+GNK+D E  RDV  +E    A+E+  +F+E SA T ENVEQ F E A KI +
Sbjct: 122 VKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178

Length = 211

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  149 bits (379), Expect = 5e-46
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 5/167 (2%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           IFK I+IGD  VGK+CL ++F   +F      TIGV+F  R +E+ GE+IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ 61

Query: 75  ERFR-AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDL 132
           ERFR ++ + YYR     + VYD+T  ++++ L SW+ + +  + PN V   L+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASA---MTGENVEQAFLETAKKI 176
                V  D A++FA+ + +   E SA      ++VE  F+  A K+
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  150 bits (379), Expect = 2e-45
 Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 25/226 (11%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
            +   FK +++GD GVGK+ LL++    +F    P TIG     + IE +   IKLQ+WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDIT-RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
           TAGQE +R++   YYRGA G L+VYD T R S+      WL + + L   +  I L+GNK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 130 MDLEGSRDVRYDEAKKFAEENDLI---------------FVEASAM--TGENVEQAFLET 172
           +DL   +    +   +   E  L+                +E SA   TG NV + F E 
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 173 AKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCSC 218
            +K+ + I+   L   + +    +          + ++    NC  
Sbjct: 181 LRKLLEEIEKLVLKNELRQLDRLNNP-------IEQAALASFNCVL 219

Length = 219

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  148 bits (376), Expect = 3e-45
 Identities = 74/199 (37%), Positives = 110/199 (55%), Gaps = 8/199 (4%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           Y ++FK +IIGD GVGKS LL +F +  F      TIGV+F  R +E++GE++KLQIWDT
Sbjct: 3   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDT 62

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKM 130
           AGQERFR +T +YYRG  G ++VYD+T   ++ ++  WL + +   N + V   L+GNK 
Sbjct: 63  AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ--NCDDVCKVLVGNKN 120

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           D    + V  ++A KFA +  +   E SA    NVE+ F    + + +  KD     N+ 
Sbjct: 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKD-----NLA 175

Query: 191 ESGVQHKERGGPASLGDSS 209
           +   Q +            
Sbjct: 176 KQQQQQQNDVVKLPKNSKR 194

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  146 bits (370), Expect = 9e-45
 Identities = 68/164 (41%), Positives = 101/164 (61%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           F+ ++IGD GVGK+CLL +FT+ +F      TIGV+F  + IEV G K+++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           R++ +T+ YYR A G  +VYDI+   +Y H+  W++D            LIGNK D E  
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           R V  ++  K A+E  + F E SA T +N++++F    + + Q 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  147 bits (373), Expect = 9e-45
 Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           IIIG  GVGK+ L+ +FT+  F   C  T+GV+F  + +E+ G+KI+LQIWDTAGQERF 
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV 138
           ++T +YYR A G ++VYDIT++ T++ L  W+       + +  + L+GNK+D E  R++
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI 123

Query: 139 RYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
              + +KFA++   + F EASA    NV++ FL+    I + +
Sbjct: 124 TRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  146 bits (370), Expect = 3e-44
 Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 7/175 (4%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQ 74
           FK ++IGD+GVGK+ ++ ++    F      TIGV+F  ++IE      ++LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD--TKNLTNPNTVI--FLIGNKM 130
           ERF  +TR YY+GA GA++V+D+TR ST+  +  W  D  +K        I   L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 131 DLEGSRD-VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQNIKDG 183
           DL+  R     ++  +F +EN  I + E SA    N+E+A     K I +N K  
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGL 175

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  143 bits (364), Expect = 8e-44
 Identities = 60/161 (37%), Positives = 96/161 (59%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK +++G+  VGK+ L+ ++ E KF      T    F  + + + G++I L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           R+ A+   YYR A GA++VYDIT   ++  +  W+ + K +   N  + ++GNK+DLE  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R V   EA+++A+       E SA TG+ +E+ FL  AK++
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  140 bits (354), Expect = 2e-42
 Identities = 61/155 (39%), Positives = 95/155 (61%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           +FK +IIG+  VGK+  L ++ +  F      T+G++F  + +  + ++IKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
           ER+R +T +YYRGA G +++YDIT   ++N +  W T  K  +  N  + L+GNK D+E 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
            R V  +  ++ A++    F EASA    NV+Q F
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  140 bits (354), Expect = 4e-42
 Identities = 61/170 (35%), Positives = 103/170 (60%), Gaps = 15/170 (8%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEF----------GTRIIEVHG 61
           Y Y+ K + +GD GVGK+  L+++T+ KF P    T+G++F          G        
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 62  EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN---LTN 118
            ++ LQ+WDTAGQERFR++T +++R A G L+++D+T   ++ ++ +W++  +      N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 119 PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
           P+ V  LIGNK DL   R+V   +A++ A++  + + E SA TG+NVE+A
Sbjct: 121 PDIV--LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  132 bits (335), Expect = 3e-39
 Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 5/158 (3%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K I +G+ GVGKSC++ ++ E +F+     TIG+++G + + V  +++++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP-----NTVIFLIGNKMD 131
           +  V   +Y+   G L+VYD+T R ++  L SWL + K    P     N V+ +  NK+D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
           L   R V  DE + +AE     + E SA TGE V + F
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  128 bits (323), Expect = 1e-37
 Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 6/169 (3%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           S + K I++GD GVGKS L++++   KF     HTIGVEF  + +EV G  + LQIWDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN---LTNPNTVIFLI-GN 128
           GQERFR++   +YRG+   L+ + +    ++ +LS+W  +      +  P +  F+I GN
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 122

Query: 129 KMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
           K+D+   R V  +EA+ +  +N D  + E SA    NV  AF E  +++
Sbjct: 123 KIDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  126 bits (319), Expect = 4e-37
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 2/161 (1%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++G  GVGKS L  +F   +F+ +   TI  +   + I V GE   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGS 135
           F A+   Y R   G ++VY IT R ++  + +       + +   V I L+GNK DLE  
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R V  +E +  AEE    F+E SA T  N+++ F    ++I
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  124 bits (312), Expect = 5e-36
 Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAG 73
             K +I+GD  VGKS LL++    K             + T +IE  G+  K  + DTAG
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           QE + A+ R YYR    +L V+DI          L     +  +       I L+GNK+D
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
           L     ++   A  FA+ N    +  SA TG+N++ AF
Sbjct: 121 LRD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  119 bits (301), Expect = 3e-34
 Identities = 65/162 (40%), Positives = 94/162 (58%), Gaps = 7/162 (4%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K I++GD+ VGK+CL+++F +  F  +   TIGV+F     EV G    LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGS 135
           F+ +  +YYRGA   ++V+D+T  ++  H   WL D     +P++V +FL+G K DL  S
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL--S 119

Query: 136 RDVRYD----EAKKFAEENDLIFVEASAMTGENVEQAFLETA 173
              +Y     +A K A E    +   SA+TGENV   F   A
Sbjct: 120 SPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  117 bits (296), Expect = 2e-33
 Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 6/157 (3%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+ D   TI  +   + IE+ GE   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLIGNKMDL 132
            F A+   Y R   G L+VY IT R ++  +  +   +   K+  +    I L+GNK DL
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDD--VPIVLVGNKCDL 117

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
           E  R V  +E K+ A +    F+E SA    NV++AF
Sbjct: 118 ESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  116 bits (294), Expect = 3e-33
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 6/157 (3%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+ +   TI  +   + IE+ GE   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLIGNKMDL 132
            F A+   Y R   G L+VY IT R ++  ++ +   +   K+  +    I L+GNK DL
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD--VPIVLVGNKCDL 119

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
           E  R V  +E K+ A +    F+E SA    NV++AF
Sbjct: 120 ENERVVSTEEGKELARQWGCPFLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  116 bits (293), Expect = 3e-33
 Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQ 74
           K I++G+  VGKS ++ +F +  F  D   TIGV+F  + I +    E ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
           E F A+T++YYRGA   ++V+  T R ++  + SW    +     +  + L+  K+DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175
              +  +EA+  A+   L     S     NV + F   A+K
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  117 bits (295), Expect = 3e-33
 Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 10/183 (5%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           K +++G   VGK+ L+ ++   +F+     +TIG  F  + + V    + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL--- 132
           R+ A++R YYRGA  A++ YD+T  S++     W+ + +NL   +  I+L G K DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQ 120

Query: 133 -EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTE 191
               R V + + + FA+E      E S+ TG+NV++ F    +K+ ++      N   TE
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF----QKVAEDFVSRANNQMNTE 176

Query: 192 SGV 194
            GV
Sbjct: 177 KGV 179

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  116 bits (293), Expect = 7e-33
 Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 1/164 (0%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +Y Y+ K++++GD  VGK  +L    +        + +G+++ T  I + G ++KLQ+WD
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWD 61

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           T+GQ RF  + RSY RGA G ++VYDIT R +++ +  W+ +      P     L+GN++
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRL 120

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174
            L   R V  ++A+ +AE N + F E S +   N+ ++F E A+
Sbjct: 121 HLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  113 bits (284), Expect = 9e-32
 Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K I++G  GVGKS L  QF   +F+ D   T    +  +++ + GE+++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQLNILDTAGQE 59

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLEG 134
            + A+  +Y+R   G L+V+ IT   ++  L+       +   + N  + L+GNK DLE 
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            R V  +EA   AE+  + +VE SA T  NV++ F +  ++I Q
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  110 bits (276), Expect = 1e-30
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+ D   TI   + T+  E+ G+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
            F A+   Y R   G L+V+ +T R ++  +  + T    + + +   + L+GNK DLE 
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            R V  +E ++ A +  + ++E SA    NV++AF +  + I
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  108 bits (270), Expect = 1e-29
 Identities = 52/130 (40%), Positives = 83/130 (63%)

Query: 47  TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL 106
           TIG++F ++ + +    ++LQ+WDTAGQERFR++  SY R +A A++VYDIT R ++ + 
Sbjct: 12  TIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT 71

Query: 107 SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE 166
           + W+ D  N    + +I L+GNK DL   R V Y+E  + A+E + +F E SA  G N++
Sbjct: 72  TKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131

Query: 167 QAFLETAKKI 176
             F + A K+
Sbjct: 132 VLFKKIAAKL 141

Length = 176

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  106 bits (267), Expect = 3e-29
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K I++GD  VGKS L+ +F    + P    T  +       +  G+ I +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136
           F+ +  SYY  A   ++V+D+TR+ TY +LS W  + +    P     ++ NK+DL    
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDL---- 116

Query: 137 DVRYDEAK-KFAEENDLIFVEASAMTGENVEQAFLETAK 174
           D    + K  FAE+++L     SA  G NV + F +  K
Sbjct: 117 DPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  106 bits (267), Expect = 9e-29
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 4/165 (2%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQ 74
            K +++GD   GK+ L+ +F ++ F      TIG++F +R I + G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV---IFLIGNKMD 131
           +    +   Y  GA    +VYDIT   ++ +L  WL+  K +   +     + L+GNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           LE +R V  ++  +FA+END+  +  SA TG+ V   F   A ++
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  101 bits (254), Expect = 3e-27
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 3/165 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK +++GD G GK+  + +    +F      T+GVE        +  KI+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I L GNK+D+   
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDI--K 117

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
                 +   F  + +L + E SA +  N E+ FL  A+K+  N 
Sbjct: 118 DRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNP 162

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  100 bits (250), Expect = 8e-27
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 15/160 (9%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           ++G  GVGKS LL+     +          T   +      E+   K+KL + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYV--KELDKGKVKLVLVDTPGLDE 59

Query: 77  F-----RAVTRSYYRGAAGALMVYDIT-RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           F       + R   RGA   L+V D T R S  +     L   + L      I L+GNK+
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLIL---RRLRKEGIPIILVGNKI 116

Query: 131 DLEGSRDVRYDE-AKKFAEENDLIFVEASAMTGENVEQAF 169
           DL   R+V      ++ A+   +   E SA TGE V++ F
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 99.8 bits (249), Expect = 2e-26
 Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
            + A+   Y R   G L V+ I  R ++  + ++    K + + + V + L+GNK DL  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA- 119

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +R V   + +  A+   + ++E SA T + VE+AF    ++I
Sbjct: 120 ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 99.5 bits (249), Expect = 2e-26
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 15/171 (8%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD  VGK+CLL  +T  KF  +   T+  +  +  + V G+++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL--- 132
           +  +    Y      L+ + +   S++ ++ + W  + K+   PN  I L+G K+DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY-CPNVPIILVGTKIDLRDD 119

Query: 133 --------EGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAK 174
                   +  + +  +E +K A+E   + ++E SA+T E +++ F E  +
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 96.9 bits (242), Expect = 2e-25
 Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 8/157 (5%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K  ++G   VGKS L  QF E  F+     TI   F ++II   G++  L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTN-PNTVIFLIGNKMDL 132
           +  + + Y  G  G ++VY +T R ++  +      + D     + P   I L+GNK DL
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP---IVLVGNKSDL 118

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
              R V  +E KK AE     F+E+SA   ENVE+AF
Sbjct: 119 HMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 95.7 bits (238), Expect = 1e-24
 Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 2/168 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+ +   TI   +  +   +  E   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
            + A+   Y R   G L VY IT RS++  ++S+      + + + V + L+GNK DL+ 
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
            R V   E ++ A+   + F+E SA    NV++AF E  ++I + +K+
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE 172

Length = 189

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 93.7 bits (233), Expect = 3e-24
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF    F+     TI  +F  + IEV      L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLIGNKMDL 132
           +F ++   Y +   G ++VY +  + T+  +      +   K        I L+GNK+DL
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK--VPIILVGNKVDL 118

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           E  R+V   E +  AEE    F+E SA +   V + F E  +++
Sbjct: 119 ESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 92.8 bits (231), Expect = 2e-23
 Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 17/168 (10%)

Query: 16  FKYIIIGDMGVGKSCLL--H---QFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           FK I++GD GVGK+  +  H   +F E+K++P    T+GVE        +   I   +WD
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEF-EKKYIP----TLGVEVHPLKFYTNCGPICFNVWD 64

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I L+GNK+
Sbjct: 65  TAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKV 123

Query: 131 DLEGSRDVRYDEAK--KFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           D++  R V+   A+   F  + +L + + SA +  N E+ FL  A+++
Sbjct: 124 DVK-DRQVK---ARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL 167

Length = 215

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 91.0 bits (226), Expect = 4e-23
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+     TI   +  ++ E+ G +  L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQV-EIDGRQCDLEILDTAGTE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
           +F A+   Y +   G L+VY +T  ++ N L         + + + V + L+GNK DLE 
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 135 SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
            R V  ++    +++  ++ F E SA    NV++ F++  ++I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 90.7 bits (225), Expect = 5e-23
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+     TI   +  + +EV G++  L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
           +F A+   Y +   G ++VY IT +ST+N L         + +   V + L+GNK DLE 
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            R V  ++ +  A +    F+E SA    NV + F +  ++I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 91.4 bits (227), Expect = 5e-23
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD GVGK+ L  Q     F+     TI   +  +++ V G+   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLIGNKMDLE 133
           + A+   + R   G ++VY IT RST+  +  +   +   K+ +  +  I ++GNK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
             R+V  +E    A      F+EASA T  NVE+AF    + + Q
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 89.5 bits (222), Expect = 1e-22
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEV--HGEKIKLQIWDTA 72
           +  ++GD  VGKS L+  F      F  +   T G +   + + V    + ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMD 131
           GQE F  +  + +   A   +VYD+T   ++N+ S W+   + +    +T   L+GNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174
           L   R+V   +A+  A+ N L F E SA  G   E  FL  A+
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 16/180 (8%)

Query: 4   MSSSGQYSYSY-IFKYIIIGDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIE 58
           M+   Q +  Y  FK +I+GD G GK+  + +      E+K+ P    TIGVE       
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----TIGVEVHPLDFF 56

Query: 59  VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN 118
            +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +  
Sbjct: 57  TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 116

Query: 119 PNTVIFLIGNKMDLEGSRDVRYDEAKK--FAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            N  I L GNK+D++     R  +AK+  F  + +L + E SA +  N E+ FL  A+K+
Sbjct: 117 -NIPIVLCGNKVDVKN----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 88.9 bits (221), Expect = 2e-22
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K  ++G  GVGKS L  +F  ++F+ +    +   + +R + + GE++ L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 77  FRAV--TRSYYRGAAGALMVYDITRRSTYNHLSSW--LTDTKNLTNPNTVIFLIGNKMDL 132
                      R A G ++VY IT RS+++ +S    L       +    + L+GNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGEN-VEQAFLE 171
             SR V  +E +K A E   +F E SA      V+  F E
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHE 159

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 88.4 bits (219), Expect = 4e-22
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+     TI  +   + IEV  ++  L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
           +F A+   Y +   G  +VY IT + ++N L         + +   V + L+GNK DLE 
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 135 SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
            R V  +E +  A +  +  F+E SA +  NV++ F +  ++I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 86.9 bits (216), Expect = 2e-21
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++GD  VGK+CLL  +T   F  D   T+   +    +EV G+ ++L +WDTAGQE + 
Sbjct: 2   VVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDYD 60

Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL----- 132
            +    Y      L+ + +   +++ ++   W  + K+   PN  I L+G K+DL     
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKH-FCPNVPIILVGTKLDLRNDKS 119

Query: 133 -------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAK 174
                  +    V Y++ +  A+    + ++E SA+T E V + F E  +
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIR 169

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 46/190 (24%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GDM VGK+ LLH++ E++F  D   T+G  F  +          + IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLIGNKMDLE 133
           F  +   Y RGAA  ++ YD++   +   L      LTDT    N + +  ++GNK+DL 
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT---ANEDCLFAVVGNKLDLT 113

Query: 134 GS-------------------RDVRYDEAKKFAEE---------------NDLIFVEASA 159
                                R V  ++AK F +                  + F E SA
Sbjct: 114 EEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF-ETSA 172

Query: 160 MTGENVEQAF 169
            TG NV++ F
Sbjct: 173 KTGYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 84.7 bits (209), Expect = 2e-20
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 7/158 (4%)

Query: 21  IGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80
           +GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              YY     A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+ 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVK-DRKVK- 117

Query: 141 DEAKK--FAEENDLIFVEASAMTGENVEQAFLETAKKI 176
             AK   F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 118 --AKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 81.8 bits (202), Expect = 2e-19
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 4/164 (2%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
            +K +++G  GVGKS +  QF    F      TI   + T+   +  E   L I DTAGQ
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQ 60

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW--LTDTKNLTNPNTVIFLIGNKMDL 132
             F A+   Y R   G ++ Y +T R ++   S +  L     LT  +  + L+GNK+DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTE-DIPLVLVGNKVDL 119

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           E  R V  +E +  A E +  F E SA     ++ AF    ++I
Sbjct: 120 EQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 81.3 bits (201), Expect = 5e-19
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 4/185 (2%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           ++ +++GD GVGKS L + FT   +  D  +   G +   R + V GE+  L ++D   Q
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYE-DSAYEASGDDTYERTVSVDGEEATLVVYDHWEQ 59

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLE 133
           E    +  S  +     ++VY +T RS++   S      +      +  I L+GNK DL 
Sbjct: 60  EDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLV 119

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN-ANMTES 192
            SR+V   E +  A   D  F+E SA    NV++ F    +++       + N   M   
Sbjct: 120 RSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKEKNTRRMASR 179

Query: 193 GVQHK 197
             +  
Sbjct: 180 KRRES 184

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 17/179 (9%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQ 74
            K +++GD G GK+CLL  + +  F  +   T+  E     ++V +G+ I+L +WDTAGQ
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTAGQ 62

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDL- 132
           E +  +    Y      L+ Y +   ++  N    W  +  +   P T I L+G K DL 
Sbjct: 63  EDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC-PGTPIVLVGLKTDLR 121

Query: 133 -----------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQN 179
                      +G   V  ++ +  A+    + ++E SA   ENV++ F          
Sbjct: 122 KDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSK 180

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 77.1 bits (190), Expect = 3e-18
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K ++IGD G GKS LL Q    +F P+     G       +EV G+   L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSS---WLTDTKNLTNPNTVIFLIGNK 129
            +     + + A   L+VYD+T R + N +S    WL + + L      + L+GNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKL-GGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 77.0 bits (190), Expect = 7e-18
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 18/159 (11%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT-RIIEVHGEKIKLQIWDTAGQE 75
           K +++G  GVGK+ L  Q   +KF  D   T G+     +I     +KI+L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 76  RFRAV------TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
            + A       +RS Y      L+V+D+      + +  WL   K      + + L+G  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAF-GGVSPVILVGTH 115

Query: 130 MDLEGSRDVRYDEAKK--FAEENDLIFVEASAMTGENVE 166
           +D     D+      K   A  ND+ FV  S   G+ + 
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFV--SCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 74.5 bits (183), Expect = 8e-17
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 19/174 (10%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           +  +    YRGA   L+ + +  +++Y N L  W+ + ++   P   I L+G K+DL   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRDD 120

Query: 136 RDVRYD-------------EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +    D             E +K  +     ++E S+ T +NV+  F + A K+
Sbjct: 121 KQFFADHPGAVPITTAQGEELRK--QIGAAAYIECSSKTQQNVKAVF-DAAIKV 171

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 10/160 (6%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K  ++GD  +GK+ L+ ++ E +F  +   T+GV F  + I + G +I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136
           F  +     + A   L ++D+TR+ST N +  W    +   N   +  L+G K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKTAIPILVGTKYDLFADL 120

Query: 137 DVRYDE-----AKKFAE--ENDLIFVEASAMTGENVEQAF 169
                E     A+K+A+  +  LIF   S     NV++ F
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIF--CSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 73.3 bits (180), Expect = 4e-16
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 18/207 (8%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           + + +G  GVGK+ L+ +F    F P    T+  E  ++  EV G K+ + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 77  FRAVTR-SYYRGAAGALMVYDITRRSTY---NHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
           F A+ + S   G A AL VY +    ++     L   + + K       V+  +GNK+D 
Sbjct: 60  FPAMRKLSIQNGDAFAL-VYSVDDPESFEEVKRLREEILEVKEDKFVPIVV--VGNKIDS 116

Query: 133 EGSRDVRYDEAKKFAE-ENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTE 191
              R V   +A    E + +  FVEASA   ENV + F E        ++   L + ++ 
Sbjct: 117 LAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKEL-------LQQANLPSWLSP 169

Query: 192 SGVQHKERGGPASLGDSSSSDKPNCSC 218
           + ++ +    P+ +      +K N SC
Sbjct: 170 A-LRRRRESAPSEIQRRPPMNKTN-SC 194

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 72.2 bits (177), Expect = 6e-16
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           ++ ++ G  GVGKS L+ +F +  F      TI   +  ++I        LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 76  RFRAVTR-SYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLIGNKMD 131
           +F A+ R S  +G A  ++VY IT + +   L      + + K        I L+GNK D
Sbjct: 61  QFPAMQRLSISKGHA-FILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD 119

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171
              SR+V   E    A   +  F+E SA T  NV++ F E
Sbjct: 120 ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQE 159

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD   GK+ LL  F +  F  +   T+  E  T   EV  ++I+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDL--- 132
           +  V    Y  +   L+ +DI+R  T  + L  W  + +    PNT + L+G K DL   
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLRTD 120

Query: 133 ---------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETA 173
                    +    V +++ +  A++     +VE SA T EN  +   E A
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 23/176 (13%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE- 75
           K +I+GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 61

Query: 76  --RFRAVTRSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
             R R ++   Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL
Sbjct: 62  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 117

Query: 133 E------------GSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKK 175
                            V+ +E +  AE+     ++E SA T E V + F E A +
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF-EMATR 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD  VGK+ L+  +T   +  +   T    F   +  V G+ ++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVV-LVDGKPVRLQLCDTAGQDE 60

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLE-- 133
           F  +    Y      L+ + +   S++ ++S  W+ + +   NP   I L+G + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK-HNPKAPIILVGTQADLRTD 119

Query: 134 ----------GSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAF 169
                     G + V    AK  AE+     ++E SA+T +N+++ F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 66.1 bits (162), Expect = 9e-14
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 21/161 (13%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++G  G GK+ +L++    + +   P TIG      +  V  + +K  +WD  GQ++ R
Sbjct: 3   LMLGLDGAGKTTILYKLKLGEVVTTIP-TIG----FNVETVEYKNVKFTVWDVGGQDKIR 57

Query: 79  AVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLE 133
            + + YY    G + V D + R       N L   L + +    P     LI  NK DL 
Sbjct: 58  PLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAP----LLILANKQDLP 113

Query: 134 GSRDVRYDEAKKFAEENDL-----IFVEASAMTGENVEQAF 169
           G+      E  +      +          SA+TG+ +++  
Sbjct: 114 GALTE--SELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 22/172 (12%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE- 75
           K +++GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 61

Query: 76  --RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL 132
             R R ++   Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL
Sbjct: 62  YDRLRPLS---YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDL 117

Query: 133 EGSRD------------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLE 171
              +D            + Y +    A+E   + ++E SA+T   ++  F E
Sbjct: 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 169

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 64.5 bits (157), Expect = 6e-13
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD   GK+ LL+ FT   F      T+  E     I V G  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 77  FRAVTRSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           F  +    Y      ++ + +    S  N  S WL + ++   P   + L+  K DL   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREP 119

Query: 136 RDVR--------YDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAK 174
           R+ R        Y+E    A+  N   ++E SA     V +AF E A+
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 64.3 bits (156), Expect = 6e-13
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDL--- 132
           +  V    Y  +   L+ +DI+R  T  + L  W  + +    PNT + L+G K DL   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 124

Query: 133 -----EGSRD----VRYDEAKKFAEE-NDLIFVEASAMTGEN 164
                E S      V YD+    A++     ++E SA+  EN
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 62.3 bits (151), Expect = 3e-12
 Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 28/189 (14%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD  VGK+CLL  +T   F  +   T+   +  +   V G  + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 77  F-RAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
           + R  T SY +     ++ + I   S+Y N    W  +  +   PN  I L+G K DL  
Sbjct: 64  YDRLRTLSYPQTNV-FIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRN 121

Query: 135 SRDVRYDEAKKFAEEND-----------------LIFVEASAMTGENVEQAFLETAKKI- 176
             D      KK  E+                   + ++E SA+  + V++ F E  + + 
Sbjct: 122 DADT----LKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177

Query: 177 YQN-IKDGK 184
               IKD K
Sbjct: 178 NPTPIKDTK 186

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 14/165 (8%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +I+GD   GK+ LL+ FT  +F  +   T+   + T    V G+ ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDC-RVDGKPVQLALWDTAGQEE 61

Query: 77  FRAVTRSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE-- 133
           +  +    Y  A   L+ + I T  S  N  + W+ + +    PN  + L+G K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 134 --------GSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAF 169
                       V   +AK  A       ++E SA+TGE V+  F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 13/163 (7%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++G    GKS LL++    + +   P T+G  F   ++++    + L +WD  GQE+ R
Sbjct: 3   LLLGLDSAGKSTLLYKLKHAELVTTIP-TVG--FNVEMLQLEK-HLSLTVWDVGGQEKMR 58

Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP---NTVIFLIGNKMDLEGS 135
            V + Y     G + V D +  +  +     L     L N       + L+ NK DL G+
Sbjct: 59  TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHI--LKNEHIKGVPVVLLANKQDLPGA 116

Query: 136 ---RDV-RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174
               ++ R  + KK+  + D      SA+TGE + +AF + A 
Sbjct: 117 LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 23/166 (13%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCP--------HTIGVEFGTRIIEVHGEKIKLQIWD 70
           +I+G    GK+  L Q T+ KF  +           T+G+  GT  IEV   K +L  WD
Sbjct: 3   LILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT--IEV--GKARLMFWD 57

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP---NTVIFLIG 127
             GQE  R++   YY  + G + V D T R  +N   S     K + N       + ++ 
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFN--ESKSAFEKVINNEALEGVPLLVLA 115

Query: 128 NKMDLEGSRDVRY-----DEAKKFAEENDLIFVEASAMTGENVEQA 168
           NK DL  +  V       D+        D +    SA+ GE VE+ 
Sbjct: 116 NKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           ++IGD GVGKS L+     ++F  + P    +   T   +V  E++   I DT+ + + R
Sbjct: 6   VLIGDEGVGKSSLIMSLVSEEFPENVPRV--LPEITIPADVTPERVPTTIVDTSSRPQDR 63

Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL--EGS 135
           A   +  R A    +VY + R ST   + + WL   + L      I L+GNK DL    S
Sbjct: 64  ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSS 122

Query: 136 RDVRYDEAKKFAEENDLI--FVEASAMTGENVEQAF 169
           +    +E      E   I   VE SA T  NV + F
Sbjct: 123 QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 57.0 bits (137), Expect = 5e-10
 Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 30/178 (16%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHT---IGVEFGTRIIEVHGEKIKLQIWDTA 72
           K +++GD+  GK+ +L     Q    DC P T      E  T  +E   ++++L +WDT+
Sbjct: 15  KLVLVGDVQCGKTAML-----QVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 69

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMD 131
           G   +  V    Y  +   L+ +DI+R   ++  L  W  +  +   P+T I LIG K D
Sbjct: 70  GSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTD 128

Query: 132 L------------EGSRDVRYDE----AKKFAEENDLIFVEASAMTGENVEQAFLETA 173
           L            +    + Y++    AK+   E    ++E SA T E    +   TA
Sbjct: 129 LRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEA---YLECSAFTSEKSIHSIFRTA 183

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 56.2 bits (135), Expect = 9e-10
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD   GK+ LLH F +  +      T+  E  T   E+   +I+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDL 132
           +  V    Y  +   L+ +DI+R  T +  L  W  +T+    PN  + L+G K+D+
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKLVLVGCKLDM 117

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 61

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDL--- 132
           +  +    Y      L+ + +   S++ N    W+ +  +   P T   L+G ++DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 133 ---------EGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                       + +  +  +K A +   + +VE SA+T + ++  F E
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 11/164 (6%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           ++ +++G   VGK+ ++ +F   +F      TI  +F  ++  + GE  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS---------WLTDTKNLTNPNTVIFLI 126
            F A+ R         ++V+ +  R ++  +                K   N    + + 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 127 GNKMDLEGSRDVRYDEAKKF-AEENDLIFVEASAMTGENVEQAF 169
           GNK D +  R+V+ DE ++    + +  + E SA    N+++ F
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 33/167 (19%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG------EKIK------- 65
           +++GD GVGKS L+H   +   +   P TIG   G + I  +G        IK       
Sbjct: 25  LVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHIT-YGSPGSSSNSIKGDSERDF 83

Query: 66  -LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNT 121
            +++WD +G ER++     +Y    G + V+D+++R T   L  W   +  T   + P  
Sbjct: 84  FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLG 143

Query: 122 --------VIFL-IGNKMDL---EGSRDVR---YDEAKKFAEENDLI 153
                   V ++ IGNK D+   EG+R       D A+++ E+  L+
Sbjct: 144 SGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190

Length = 334

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 53.5 bits (128), Expect = 5e-09
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++GD  VGK+CLL  +    F  +   T+   +    + V G++  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQE 59

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
            +  +    Y      L+ + +   +++ ++   W+ + K    PN    LIG ++DL  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

Query: 135 ------------SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIY 177
                        + +  ++ +K A+E     +VE SA+T + ++  F E    I 
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE------KIKLQIWD 70
           K +++GD GVGKS L+H   + + + +   T+G     R    +GE         +++WD
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHT-YGEGTPEEKTFYVELWD 60

Query: 71  TAGQ----ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109
             G     E  ++    +Y    G + V+D+T + +  +L  W
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRW 103

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 79
           ++G    GK+ L++     +F  D   T+G  F  R +      IK  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 80  VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLEGSRDV 138
           +   Y RG    + V D   R       + L D     +   +  L+ GNK DL G+  V
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV 119

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 22/166 (13%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFM------------PDCPHTIGVEFGTRIIEVHGEKI 64
           K ++IG +G GK+  +   +++  +               P T+ ++FG+  +    E  
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDT 68

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF 124
            + ++ T GQERF+ +     RGA GA+++ D +R  T++           LT+ N +  
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE----IIDFLTSRNPIPV 124

Query: 125 LIG-NKMDLEGSRDV-RYDEAKKFAEENDLIFVEASAMTGENVEQA 168
           ++  NK DL  +    +  EA K    + +  +E  A  GE     
Sbjct: 125 VVAINKQDLFDALPPEKIREALKLELLS-VPVIEIDATEGEGARDQ 169

Length = 187

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           + + +G  G GK+ +L +  + +FM   P TIG    T    V  + +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIP-TIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 77  FRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
            R + + YY      + V D + R      ++ L+  LT+ K L +   +IF   NK D+
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTE-KELRDALLLIF--ANKQDV 112

Query: 133 EGSRDV 138
            G+  V
Sbjct: 113 AGALSV 118

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 13/129 (10%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD--------- 70
           ++G  GVGK+ ++ QF  Q+F  +   T         + + G    L I D         
Sbjct: 5   VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH---LSSWLTDTKNLTNPNTVIFLIG 127
           TAGQE      R   R +   ++VYDI    ++++   L   + +T+   N    I ++G
Sbjct: 65  TAGQEWMDPRFRG-LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123

Query: 128 NKMDLEGSR 136
           NK D +  R
Sbjct: 124 NKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 14/125 (11%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIG--VEFGTRIIEVHGEKIKLQIWDTAG 73
           +K II+G    GK+ +L+QF   + +   P TIG  VE      E+  + I+  +WD  G
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTSP-TIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP---NTVIFLIGNKM 130
           QE  R+   +YY      ++V D T R         L   K L +      V+ ++ NK 
Sbjct: 69  QESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEEL--YKMLAHEDLRKAVLLVLANKQ 126

Query: 131 DLEGS 135
           DL+G+
Sbjct: 127 DLKGA 131

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 25/166 (15%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIG--VEFGTRIIEVHGEKIKLQIWDTAG 73
            + +I+G    GK+ +L++    + +   P TIG  VE       V  + +K  +WD  G
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTTIP-TIGFNVE------TVTYKNVKFTVWDVGG 67

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GN 128
           QE  R + R+Y+      + V D   R         L + L + +          LI  N
Sbjct: 68  QESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEEL----ADAPLLILAN 123

Query: 129 KMDLEGSRDVRYDEAKKFAEENDL----IFVEA-SAMTGENVEQAF 169
           K DL G+      E ++    ++L      ++  SA+TGE +++  
Sbjct: 124 KQDLPGAMSE--AEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGL 167

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           + +++G    GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTIP-TIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDL 132
            R + R YY    G + V D   R   +     L    N     + VI +  NK DL
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV---HGEKIKLQIWDTAGQE 75
           +++G    GK+ +L++    +F+   P T G  F T  I+V   + + +    WD  GQE
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEFVNTVP-TKG--FNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEG 134
           + R + +SY R   G + V D           + L   TK   N    + ++ NK DL  
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123

Query: 135 SRDVRYDEAKKFAEENDLI------FVEASAMTGENVEQAFLETAKKIYQNI 180
           +  V   E +K    ++L          A A+ GE ++    E  +K+Y+ I
Sbjct: 124 ALPV--SEVEKLLALHELSSSTPWHVQPACAIIGEGLQ----EGLEKLYEMI 169

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 47/185 (25%), Positives = 66/185 (35%), Gaps = 38/185 (20%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTR-IIEVH----GEKIKLQI 68
            K +IIG   VGKS LL+    +    + D   T      TR +IE      G  I +++
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT------TRDVIEEDINLNG--IPVRL 269

Query: 69  WDTAGQ-------ERF---RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN 118
            DTAG        ER    RA        A   L V D ++      L         L  
Sbjct: 270 VDTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQ-----PLDKEDLALIELLP 322

Query: 119 PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
               I ++ NK DL         E +     N    +  SA TGE ++ A  E  K+++ 
Sbjct: 323 KKKPIIVVLNKADLVSK-----IELESEKLANGDAIISISAKTGEGLD-ALREAIKQLFG 376

Query: 179 NIKDG 183
                
Sbjct: 377 KGLGN 381

Length = 454

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 13/156 (8%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +I+G  G GK+ +L++    + +   P TIG    T    V  + +K Q+WD  GQ   R
Sbjct: 3   LILGLDGAGKTTILYRLQVGEVVTTIP-TIGFNVET----VTYKNLKFQVWDLGGQTSIR 57

Query: 79  AVTRSYYRGAAGALMV---YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
              R YY      + V    D  R          + + + L +   ++F   NK D+ G+
Sbjct: 58  PYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVF--ANKQDMPGA 115

Query: 136 RDV-RYDEAKKFAEENDLIF--VEASAMTGENVEQA 168
                  E    +E  D  +   + SA  GE +++ 
Sbjct: 116 LSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEG 151

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R YY 
Sbjct: 21  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 75

Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEGS 135
           G  G + V D   R   + +     +   + N     + ++ +  NK DL  +
Sbjct: 76  GTQGLIFVVDSADR---DRIDEARQELHRIINDREMRDALLLVFANKQDLPDA 125

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 47  TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN-- 104
           TI    G  I  +     KL IWD  GQ+  R+  R+Y+      + V D + R+     
Sbjct: 41  TISPTLGFNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDC 100

Query: 105 --HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-----IFVEA 157
              L   L + + L     +IF   NK DL G+     +E ++  E + +          
Sbjct: 101 KRELQKLLVEER-LAGATLLIFA--NKQDLPGALSP--EEIREVLELDSIKSHHWRIFGC 155

Query: 158 SAMTGENVEQAF 169
           SA+TGEN+    
Sbjct: 156 SAVTGENLLDGI 167

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++G    GK+ +L++    + +   P TIG    T    V  + +K  +WD  GQ++ R
Sbjct: 21  LMVGLDAAGKTTILYKLKLGEVVTTIP-TIGFNVET----VEYKNLKFTMWDVGGQDKLR 75

Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP---NTVIFLIGNKMDL 132
            + R YY+   G + V D   R         L   + L+     + V+ +  NK DL
Sbjct: 76  PLWRHYYQNTNGLIFVVDSNDRERIGDAREEL--ERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 33/134 (24%)

Query: 57  IEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA---GALMVYDI-------TRRSTYNHL 106
           +    +K  + I DT G   F   T+   RGA+   GA++V D        TR     HL
Sbjct: 59  VSFETKKRLINIIDTPGHVDF---TKEMIRGASQADGAILVVDAVEGVMPQTRE----HL 111

Query: 107 SSWLTDTKNLTNPNTVIFLIGNKMDL-------EGSRDVRYDEAKKFAEENDLI-FVEAS 158
              L  T  +     ++F+  NK+D        E   ++  +  +K+    + +  V  S
Sbjct: 112 --LLAKTLGV---PIIVFI--NKIDRVDDAELEEVVEEISRELLEKYGFGGETVPVVPGS 164

Query: 159 AMTGENVEQAFLET 172
           A+TGE +    LE 
Sbjct: 165 ALTGEGI-DELLEA 177

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 40/190 (21%)

Query: 16  FKYIIIGDMGVGKS-------CLLHQFTEQKFMPDCP-------HTIGVEFGTRIIEV-H 60
            K +++GD  VGK+       C       Q      P       + +  E   R  +V  
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 61  GEKIKLQIWDTAG-QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTN 118
           G  + L++WDT G  ++ R   R  Y  +   L+ + I   ++  ++ + W  + ++   
Sbjct: 63  GVSVSLRLWDTFGDHDKDR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC- 118

Query: 119 PNTVIFLIGNKMDL-------------------EGSRDVRYDEAKKFAEENDLIFVEASA 159
           P   + L+G K+DL                   + +  +  +  +  A+E  + + E S 
Sbjct: 119 PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSV 178

Query: 160 MTGENVEQAF 169
           +T   V+  F
Sbjct: 179 VTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++G    GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ++ R
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIR 58

Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP---NTVIFLIGNKMDL 132
            + R Y++   G + V D   R         L   + L      + V+ +  NK DL
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERIGEAREEL--QRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 38/132 (28%)

Query: 54  TR-IIEVH----GEKIKLQIWDTAG---------QERFRAVTRSYYRGAAGA---LMVYD 96
           TR +IE      G  I +++ DTAG         +     + R+       A   L+V D
Sbjct: 38  TRDVIEEEIDLGG--IPVRLIDTAGLRETEDEIEKI---GIERAREA-IEEADLVLLVVD 91

Query: 97  ITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFV 155
            +             D + L  P    + ++ NK DL         +A+  +E N    +
Sbjct: 92  ASEGLD-------EEDLEILELPAKKPVIVVLNKSDLLS-------DAEGISELNGKPII 137

Query: 156 EASAMTGENVEQ 167
             SA TGE +++
Sbjct: 138 AISAKTGEGIDE 149

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           + +++G    GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 77  FRAVTRSYYRGAAGALMVYDITRR 100
            R + R Y++   G + V D   R
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDR 97

Length = 181

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQK---FMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           K + +G    GK+ LLH   + +    +P   P +  +  G          +K   +D  
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIG---------NVKFTTFDLG 71

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTY----NHLSSWLTDTKNLTNPNTVIFLIGN 128
           G E+ R V + Y+    G + + D      +      L S L D       N  I ++GN
Sbjct: 72  GHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLND---EELANVPILILGN 128

Query: 129 KMDLEG 134
           K+D  G
Sbjct: 129 KIDKPG 134

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0078|consensus	207		100.0
KOG0094|consensus	221		100.0
KOG0098|consensus	216		100.0
KOG0097|consensus	215		100.0
KOG0087|consensus	222		100.0
KOG0086|consensus	214		100.0
KOG0080|consensus	209		100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0091|consensus	213		100.0
KOG0079|consensus	198		100.0
KOG0095|consensus	213		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394|consensus	210		100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0093|consensus	193		100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0088|consensus	218		100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
KOG0081|consensus	219		100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
KOG0083|consensus	192		99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
KOG0395|consensus	196		99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
KOG4252|consensus	246		99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
KOG0393|consensus	198		99.96
PTZ00099	176	rab6; Provisional	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
KOG0073|consensus	185		99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
KOG3883|consensus	198		99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
KOG0070|consensus	181		99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
PRK04213	201	GTP-binding protein; Provisional	99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
KOG1673|consensus	205		99.9
KOG0075|consensus	186		99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.89
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
KOG0071|consensus	180		99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.88
PRK15494	339	era GTPase Era; Provisional	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PRK11058	426	GTPase HflX; Provisional	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.85
PRK00089	292	era GTPase Era; Reviewed	99.85
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.85
PRK12298	390	obgE GTPase CgtA; Reviewed	99.85
KOG4423|consensus	229		99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.85
KOG0096|consensus	216		99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.84
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
KOG0076|consensus	197		99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.81
PRK00093	435	GTP-binding protein Der; Reviewed	99.81
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
KOG0074|consensus	185		99.8
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.8
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.79
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.79
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.79
PRK10218	607	GTP-binding protein; Provisional	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.78
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.78
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.78
PRK12317	425	elongation factor 1-alpha; Reviewed	99.78
KOG0072|consensus	182		99.78
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.77
COG0218	200	Predicted GTPase [General function prediction only	99.77
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.77
PRK04004	586	translation initiation factor IF-2; Validated	99.77
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.76
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.75
KOG1423|consensus	379		99.75
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.75
COG0486	454	ThdF Predicted GTPase [General function prediction	99.74
COG1160	444	Predicted GTPases [General function prediction onl	99.74
PRK12736	394	elongation factor Tu; Reviewed	99.73
COG1160	444	Predicted GTPases [General function prediction onl	99.73
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.73
PRK12735	396	elongation factor Tu; Reviewed	99.73
COG2262	411	HflX GTPases [General function prediction only]	99.72
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.72
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.72
KOG1707|consensus	625		99.72
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.72
CHL00071	409	tufA elongation factor Tu	99.72
KOG1489|consensus	366		99.7
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.7
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.69
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.68
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.68
PLN03126	478	Elongation factor Tu; Provisional	99.68
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.68
KOG0462|consensus	650		99.68
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.68
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.67
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.66
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.66
PRK00049	396	elongation factor Tu; Reviewed	99.65
PLN00043	447	elongation factor 1-alpha; Provisional	99.65
PRK13351	687	elongation factor G; Reviewed	99.65
COG1084	346	Predicted GTPase [General function prediction only	99.64
PTZ00141	446	elongation factor 1- alpha; Provisional	99.63
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.63
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.63
COG0536	369	Obg Predicted GTPase [General function prediction	99.63
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.63
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.62
PLN03127	447	Elongation factor Tu; Provisional	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.62
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.62
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.6
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.6
KOG1145|consensus	683		99.6
PRK12739	691	elongation factor G; Reviewed	99.57
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.57
KOG0077|consensus	193		99.57
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.56
PRK09602	396	translation-associated GTPase; Reviewed	99.53
COG1163	365	DRG Predicted GTPase [General function prediction	99.53
PRK09866	741	hypothetical protein; Provisional	99.52
COG3596	296	Predicted GTPase [General function prediction only	99.51
KOG3905|consensus	473		99.51
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.51
KOG1191|consensus	531		99.51
KOG1707|consensus	625		99.5
KOG0090|consensus	238		99.5
PRK00007	693	elongation factor G; Reviewed	99.49
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.46
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.46
KOG1490|consensus	620		99.46
PRK12740	668	elongation factor G; Reviewed	99.46
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.44
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.44
PRK14845	1049	translation initiation factor IF-2; Provisional	99.43
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.42
PTZ00258	390	GTP-binding protein; Provisional	99.41
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.4
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.39
KOG1532|consensus	366		99.38
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.37
PRK13768	253	GTPase; Provisional	99.37
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.37
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.36
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.34
PTZ00416	836	elongation factor 2; Provisional	99.34
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.33
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.32
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.32
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.31
KOG1144|consensus	1064		99.31
PRK09601	364	GTP-binding protein YchF; Reviewed	99.3
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.3
KOG0461|consensus	522		99.28
PRK07560	731	elongation factor EF-2; Reviewed	99.28
KOG0458|consensus	603		99.25
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.24
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.22
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.22
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.21
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.2
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.2
KOG3886|consensus	295		99.2
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.2
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.19
KOG0705|consensus	749		99.17
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.17
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.15
KOG0082|consensus	354		99.15
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.15
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.09
KOG0410|consensus	410		99.08
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.08
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.07
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.07
KOG0468|consensus	971		99.05
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.03
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.02
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.02
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.02
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.01
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.95
KOG2655|consensus	366		98.95
KOG3887|consensus	347		98.94
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.92
KOG1486|consensus	364		98.86
KOG1547|consensus	336		98.84
PRK12289	352	GTPase RsgA; Reviewed	98.83
KOG0464|consensus	753		98.79
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.79
KOG2486|consensus	320		98.78
PRK12288	347	GTPase RsgA; Reviewed	98.76
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.75
PRK00098	298	GTPase RsgA; Reviewed	98.74
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.7
KOG1954|consensus	532		98.7
KOG0467|consensus	887		98.64
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.62
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.62
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.6
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.59
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.57
KOG1491|consensus	391		98.55
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.55
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.54
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.53
cd03112	158	CobW_like The function of this protein family is u	98.53
KOG0463|consensus	641		98.52
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.51
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.51
KOG0448|consensus	749		98.5
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.49
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.48
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.47
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.45
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.44
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.44
COG1161	322	Predicted GTPases [General function prediction onl	98.41
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.4
KOG1143|consensus	591		98.38
KOG0460|consensus	449		98.38
KOG0447|consensus	980		98.37
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.36
KOG0465|consensus	721		98.35
PRK12288	347	GTPase RsgA; Reviewed	98.33
PRK10416	318	signal recognition particle-docking protein FtsY;	98.33
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.31
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.3
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	98.29
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.29
COG0523	323	Putative GTPases (G3E family) [General function pr	98.26
PRK14974	336	cell division protein FtsY; Provisional	98.24
PRK13796	365	GTPase YqeH; Provisional	98.23
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.22
KOG0466|consensus	466		98.22
PRK01889	356	GTPase RsgA; Reviewed	98.21
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.2
COG3523	1188	IcmF Type VI protein secretion system component Va	98.19
COG1162	301	Predicted GTPases [General function prediction onl	98.18
KOG4273|consensus	418		98.17
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.16
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.16
PRK12289	352	GTPase RsgA; Reviewed	98.15
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.15
KOG0085|consensus	359		98.13
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.1
KOG0099|consensus	379		98.09
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.09
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.09
PRK13796	365	GTPase YqeH; Provisional	98.09
PRK13695	174	putative NTPase; Provisional	98.05
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.04
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.98
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.97
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
cd03110	179	Fer4_NifH_child This protein family's function is	97.96
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.95
PRK00098	298	GTPase RsgA; Reviewed	97.95
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.93
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.91
cd03114	148	ArgK-like The function of this protein family is u	97.87
KOG3859|consensus	406		97.85
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.84
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.83
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.75
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.74
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.73
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.72
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.7
KOG1424|consensus	562		97.67
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.66
PRK10867	433	signal recognition particle protein; Provisional	97.62
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.62
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.62
KOG1487|consensus	358		97.61
COG1162	301	Predicted GTPases [General function prediction onl	97.6
TIGR00959	428	ffh signal recognition particle protein. This mode	97.59
KOG0469|consensus	842		97.59
PF00004	132	AAA: ATPase family associated with various cellula	97.58
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.56
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.56
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.55
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.54
PRK08118	167	topology modulation protein; Reviewed	97.53
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.52
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.52
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.5
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.49
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.47
PRK07261	171	topology modulation protein; Provisional	97.46
KOG0780|consensus	483		97.46
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.45
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.42
KOG2485|consensus	335		97.4
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.4
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.38
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.38
PRK10646	153	ADP-binding protein; Provisional	97.37
KOG2484|consensus	435		97.36
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.35
PF05729	166	NACHT: NACHT domain	97.34
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.32
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.29
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.29
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.28
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.27
COG0802	149	Predicted ATPase or kinase [General function predi	97.26
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.25
cd03111	106	CpaE_like This protein family consists of proteins	97.22
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.2
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.19
PRK06217	183	hypothetical protein; Validated	97.19
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.18
KOG0459|consensus	501		97.17
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.17
PRK03839	180	putative kinase; Provisional	97.17
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.16
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.15
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.14
PRK14737	186	gmk guanylate kinase; Provisional	97.12
PRK04195	482	replication factor C large subunit; Provisional	97.12
PRK14738	206	gmk guanylate kinase; Provisional	97.11
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.11
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.1
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.1
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.1
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.09
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.09
PRK14530	215	adenylate kinase; Provisional	97.08
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.07
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.07
smart00382	148	AAA ATPases associated with a variety of cellular	97.07
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.06
PRK13949	169	shikimate kinase; Provisional	97.02
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.02
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.01
PRK14532	188	adenylate kinase; Provisional	97.0
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.99
KOG3347|consensus	176		96.98
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.98
PRK00625	173	shikimate kinase; Provisional	96.96
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.96
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.95
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.95
PRK01889	356	GTPase RsgA; Reviewed	96.95
COG4152	300	ABC-type uncharacterized transport system, ATPase	96.95
PTZ00088	229	adenylate kinase 1; Provisional	96.93
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.93
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.93
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.92
PRK02496	184	adk adenylate kinase; Provisional	96.91
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.9
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.89
PRK14531	183	adenylate kinase; Provisional	96.88
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.88

>KOG0084|consensus

Probab=100.00  E-value=1.1e-44  Score=253.91  Aligned_cols=180  Identities=46%  Similarity=0.768  Sum_probs=171.6

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      +...+++.+||+|+|++|||||+|+.||.++.|.+.+..|+++++..+.+.+++..+.++||||+|+++|+.+...||++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCCCCCHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVE  166 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~  166 (218)
                      ++++|+|||+++.+||+.+..|+.++..+...++|.++|+||+|+.+.+.++.++++.|+..++++ ++|+||+++.|++
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            999999999999999999999999999999899999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCcccc
Q psy1169         167 QAFLETAKKIYQNIKDGKLNA  187 (218)
Q Consensus       167 ~~~~~i~~~~~~~~~~~~~~~  187 (218)
                      ++|..+...+.++........
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCC
Confidence            999999999988866554444

>KOG0092|consensus

Probab=100.00  E-value=9e-42  Score=238.39  Aligned_cols=170  Identities=41%  Similarity=0.732  Sum_probs=161.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+|++++|..+||||||+.|+..+.|.+...+|++..+.+..+.++...+.|.||||+|+++|.++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            46799999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      +|||+++.+||..++.|++.+.....+++.+.+++||+||.+.|++..++++.++...++.++|+||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q psy1169         173 AKKIYQNIKD  182 (218)
Q Consensus       173 ~~~~~~~~~~  182 (218)
                      .+.+......
T Consensus       163 a~~lp~~~~~  172 (200)
T KOG0092|consen  163 AEKLPCSDPQ  172 (200)
T ss_pred             HHhccCcccc
Confidence            9988665443

>KOG0078|consensus

Probab=100.00  E-value=7.5e-41  Score=237.98  Aligned_cols=175  Identities=45%  Similarity=0.834  Sum_probs=168.5

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      ..++++.+||+++|++|||||+++.+|..+.+...+..+.++++..+.+..++..+.+++|||+|+++|..+...|++++
T Consensus         6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA   85 (207)
T KOG0078|consen    6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA   85 (207)
T ss_pred             cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence            33889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      +++++|||+++..||+.+..|+..+..+....+|+++|+||+|+...|.++.+..++++.+++++++|+||++|.||+++
T Consensus        86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea  165 (207)
T KOG0078|consen   86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA  165 (207)
T ss_pred             CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcC
Q psy1169         169 FLETAKKIYQNIKDG  183 (218)
Q Consensus       169 ~~~i~~~~~~~~~~~  183 (218)
                      |-.|.+.+++.....
T Consensus       166 F~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  166 FLSLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHHHhhcchh
Confidence            999999999865544

>KOG0094|consensus

Probab=100.00  E-value=1e-40  Score=233.20  Aligned_cols=166  Identities=38%  Similarity=0.674  Sum_probs=158.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+|++++|+.+|||||||.|+..+.|...|..|++.++....+.+.+..+.+++|||+|+++|+++.+.|++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            44999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCC-CCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNP-NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |||+++..||+...+|++.+...++. ++.+++|+||.||.+.+++..++....++++++.|+++||+.|.|+.++|..|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            99999999999999999999988876 48899999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHh
Q psy1169         173 AKKIYQN  179 (218)
Q Consensus       173 ~~~~~~~  179 (218)
                      ...+.+.
T Consensus       181 aa~l~~~  187 (221)
T KOG0094|consen  181 AAALPGM  187 (221)
T ss_pred             HHhccCc
Confidence            7777654

>KOG0098|consensus

Probab=100.00  E-value=2e-40  Score=230.00  Aligned_cols=181  Identities=62%  Similarity=1.043  Sum_probs=171.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .+.+.+|++++|+.|||||+|+.+|.+..|.+.+..|+++++..+.+.++++.+.++||||+|++.|.++...|++.+.+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +|+|||++.+++|..+..|+..+.++..++..+++++||+||...|.+..++.++|+.++++.+.++||+++.|++++|.
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCcccccccc
Q psy1169         171 ETAKKIYQNIKDGKLNANMTE  191 (218)
Q Consensus       171 ~i~~~~~~~~~~~~~~~~~~~  191 (218)
                      .+...++.....+.....+..
T Consensus       162 nta~~Iy~~~q~g~~~~~~~~  182 (216)
T KOG0098|consen  162 NTAKEIYRKIQDGVFDDINES  182 (216)
T ss_pred             HHHHHHHHHHHhccccccccc
Confidence            999999888776655544443

>KOG0097|consensus

Probab=100.00  E-value=3e-40  Score=219.51  Aligned_cols=211  Identities=80%  Similarity=1.252  Sum_probs=200.0

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      .+..+.+.+|.+++|+.|+|||+|++.|...+|....+.++++++..+.+++.+..+.++|||++|+++|+...+.|+++
T Consensus         4 ~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg   83 (215)
T KOG0097|consen    4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG   83 (215)
T ss_pred             CccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +.+.++|||++.+.+++.+..|+........++..+++++||.|+...+.+.++++++|+.++++.++++|+++|.|+++
T Consensus        84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved  163 (215)
T KOG0097|consen   84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED  163 (215)
T ss_pred             ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence            99999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCcccccccccccccccCC-CCCcCCCCCCCCCCCCCC
Q psy1169         168 AFLETAKKIYQNIKDGKLNANMTESGVQHKERG-GPASLGDSSSSDKPNCSC  218 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~  218 (218)
                      .|-...+.+++.+.++.+..+.-++.+++++.- ...+....+++++.+|+|
T Consensus       164 afle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  164 AFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            999999999999999999999999999998773 345667788899999999

>KOG0087|consensus

Probab=100.00  E-value=1.6e-40  Score=235.26  Aligned_cols=183  Identities=48%  Similarity=0.830  Sum_probs=175.6

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      ....+++.+||+++|++|+|||-|+.||..++|..+..+|+++++.++.+.++++.+..+||||+|+++|+.+...|+++
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +.+.++|||++...+|+.+..|+.+++.+.+.++++++|+||+||.+.+.+..++++.++...++.++++||+++.|+++
T Consensus        87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~  166 (222)
T KOG0087|consen   87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEK  166 (222)
T ss_pred             cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCccccccc
Q psy1169         168 AFLETAKKIYQNIKDGKLNANMT  190 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~~~~~~  190 (218)
                      +|..++..|+...+...+.....
T Consensus       167 aF~~~l~~I~~~vs~k~~~~~~~  189 (222)
T KOG0087|consen  167 AFERVLTEIYKIVSKKQLDENND  189 (222)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999999988877766655

>KOG0086|consensus

Probab=100.00  E-value=1.5e-40  Score=223.45  Aligned_cols=211  Identities=54%  Similarity=0.948  Sum_probs=197.0

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      |.+.|++.+|++++|+.|.|||+|+++|...+|......++++++..+.+.+.++.+.++||||+|+++|++..+.|+++
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +.+.++|||++++++|+.+.+|+..++....+++.+++++||.||...+++.+.++-.|+++..+.++++|+++|.|+++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            99999999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCcccccccccccccccC--CCCCcCCCCCCCCCCCCCC
Q psy1169         168 AFLETAKKIYQNIKDGKLNANMTESGVQHKER--GGPASLGDSSSSDKPNCSC  218 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~c~~  218 (218)
                      .|-...+.|+..+..+.+......+.++...-  ..+-.++..-.+.++-|.|
T Consensus       162 aFl~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c~C  214 (214)
T KOG0086|consen  162 AFLKCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPCGC  214 (214)
T ss_pred             HHHHHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCCCC
Confidence            99999999999999999999999988887655  3344444456677888888

>KOG0080|consensus

Probab=100.00  E-value=8.4e-39  Score=216.58  Aligned_cols=170  Identities=45%  Similarity=0.791  Sum_probs=161.7

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      ..+...+||+++|.+|+|||||+-+|..+.|.+..+.++++++..+.+.+++..+.+.||||+|+++|+.+...|++++.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ++|+|||++.+++|..+..|++++..+.. +++..++|+||.|....|.++.++..+|+..+++.++|+||++..++...
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            99999999999999999999999998874 57778999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |+.++..|++.
T Consensus       166 FeelveKIi~t  176 (209)
T KOG0080|consen  166 FEELVEKIIET  176 (209)
T ss_pred             HHHHHHHHhcC
Confidence            99999999874

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=8.5e-38  Score=230.36  Aligned_cols=184  Identities=37%  Similarity=0.719  Sum_probs=164.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      ++|+++|..|||||||+++|..+.|...+.++.+.++....+.+++..+.+.|||++|++.+..++..|++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999999888899998888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      |++++++|+.+..|+..+......+.|+++|+||+|+...+++..+++.++++.. ++.|++|||++|.|++++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766668999999999999878888888888898874 788999999999999999999999


Q ss_pred             HHHHhhhcCcccccccccccccccC
Q psy1169         175 KIYQNIKDGKLNANMTESGVQHKER  199 (218)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~  199 (218)
                      .+..........+...++.-..++-
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
T cd04120         161 DILKKMPLDILRNELSNSILSLQPE  185 (202)
T ss_pred             HHHHhCccccccccccchhhccCCC
Confidence            9988766666666666666555544

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=2.8e-37  Score=230.86  Aligned_cols=208  Identities=43%  Similarity=0.759  Sum_probs=171.7

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      ..+++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++
T Consensus         7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~   86 (216)
T PLN03110          7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV   86 (216)
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence            34568899999999999999999999999988888889999988888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++|+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf  166 (216)
T PLN03110         87 GALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF  166 (216)
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766789999999999998877788788999998899999999999999999999


Q ss_pred             HHHHHHHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169         170 LETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS  217 (218)
Q Consensus       170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  217 (218)
                      +++++.+.+................+.+..++.....+..+.++.+||
T Consensus       167 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (216)
T PLN03110        167 QTILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTSGNNKRGCC  214 (216)
T ss_pred             HHHHHHHHHHhhccccccccCcccccCcCcCCcccccCccCCCCCCCc
Confidence            999999988765544333221111122222222222334555666764

>KOG0091|consensus

Probab=100.00  E-value=2.7e-38  Score=214.73  Aligned_cols=207  Identities=43%  Similarity=0.715  Sum_probs=183.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      -..+.++.+|+|++-+|||+|++.+..+.+.+-.+||.++++..+.++. ++..+.+++|||+|+++|+++...|++++-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            3467899999999999999999999999999999999999999988777 678899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcC-C-CCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-P-NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      ++++|||+++.+||+.+..|+.....+.. + .+...+|++|+||...|++..++++.++..+++.|+|+|+++|.|+++
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence            99999999999999999999998877664 4 444778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169         168 AFLETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS  217 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  217 (218)
                      .|+.+.+.++..+..+.......=..++...+++......-..|.|.+||
T Consensus       164 AF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  164 AFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence            99999999999999888777766666666555555555566666666554

>KOG0079|consensus

Probab=100.00  E-value=1e-38  Score=213.33  Aligned_cols=170  Identities=42%  Similarity=0.728  Sum_probs=162.6

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      -.+.+.++.+|+|++|+|||+|+.+|..+.|+.+|..++++++..+.+.+++..+.+.|||++|++.|+.+...|++..+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++++|||+++.+||.++..|++.+.... +.+|-++|+||.|.++.+.+..+++++|+...++.+||+|++++.|++.+|
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            9999999999999999999999998876 578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy1169         170 LETAKKIYQNI  180 (218)
Q Consensus       170 ~~i~~~~~~~~  180 (218)
                      ..|.+++++..
T Consensus       162 ~cit~qvl~~k  172 (198)
T KOG0079|consen  162 HCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>KOG0095|consensus

Probab=100.00  E-value=6.7e-38  Score=209.91  Aligned_cols=208  Identities=38%  Similarity=0.721  Sum_probs=177.4

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .+|...+||+++|..|+|||+|+++|..+-|++....++++++-.+.+++++..+.++||||+|+++|+++...|++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++|++||++...+|+.+.+|+..+..+....+.-++|+||.|+.+.++++....++|+....+.|+++||++..|++.+|
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf  161 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF  161 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999999999999999998888899999999999999999999999999989999999999999999999


Q ss_pred             HHHHHHHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169         170 LETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS  217 (218)
Q Consensus       170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  217 (218)
                      ..+.-++..........++-.....+.+..+++....+-.+-+.-.||
T Consensus       162 ~~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~aqt~~~~cc  209 (213)
T KOG0095|consen  162 LDLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYAQTQLLTCC  209 (213)
T ss_pred             HHHHHHHHHHHHhccchhhccccCccccCCCCcccchhHHHHHHhccc
Confidence            998888777655444444433333333333443333333333333343

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.4e-36  Score=222.00  Aligned_cols=168  Identities=33%  Similarity=0.666  Sum_probs=154.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +++.+||+|+|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            46789999999999999999999999888888878888888777788888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||++++.+|+.+..|+..+.... ++.|++||+||.|+.+.+.+..++++.+++..+++++++||++|.|++++|.+
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999997655 68999999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1169         172 TAKKIYQNI  180 (218)
Q Consensus       172 i~~~~~~~~  180 (218)
                      +.+.+..+.
T Consensus       162 l~~~i~~~~  170 (189)
T cd04121         162 LARIVLMRH  170 (189)
T ss_pred             HHHHHHHhc
Confidence            999887643

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394|consensus

Probab=100.00  E-value=1.7e-37  Score=215.04  Aligned_cols=168  Identities=35%  Similarity=0.681  Sum_probs=157.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +...+||+++|++|+|||||++++....|...+..+++.++..+.+.+++..+.++||||+|+++|.++...+++++|..
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCC----CCeEEEEeeCCCCCCC--ccccHHHHHHHHHh-CCCcEEEeccCCCCC
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGS--RDVRYDEAKKFAEE-NDLIFVEASAMTGEN  164 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~  164 (218)
                      +++||+.++.+|+.+..|.+++.....+    ..|+||++||.|+...  +.++...++.||.. .++||||+||++..|
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N  165 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN  165 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence            9999999999999999999998876653    5789999999999763  78898999999987 789999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1169         165 VEQAFLETAKKIYQN  179 (218)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (218)
                      +.++|..+.+.+++.
T Consensus       166 V~~AFe~ia~~aL~~  180 (210)
T KOG0394|consen  166 VDEAFEEIARRALAN  180 (210)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999885

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.1e-36  Score=223.22  Aligned_cols=172  Identities=36%  Similarity=0.623  Sum_probs=151.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      +||+|+|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888999988877777777 7889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc----CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCCCCHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT----NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQAF  169 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~  169 (218)
                      ||++++++|+.+..|+..+....    ...+|+++|+||.|+...+.+..+++.+++...+ ..++++||+++.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988776432    2578999999999997666777888999999888 689999999999999999


Q ss_pred             HHHHHHHHHhhhcCcccc
Q psy1169         170 LETAKKIYQNIKDGKLNA  187 (218)
Q Consensus       170 ~~i~~~~~~~~~~~~~~~  187 (218)
                      .++++.+.+.........
T Consensus       161 ~~l~~~l~~~~~~~~~~~  178 (201)
T cd04107         161 RFLVKNILANDKNLQQAE  178 (201)
T ss_pred             HHHHHHHHHhchhhHhhc
Confidence            999999987654443333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093|consensus

Probab=100.00  E-value=2.4e-36  Score=201.72  Aligned_cols=176  Identities=34%  Similarity=0.687  Sum_probs=165.0

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      ..+..++-+|++|+|+..+|||||+.++++..|...+.++.++++..+.+....+.+.+++|||+|++.++.+...++++
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg   93 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG   93 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence            34456778899999999999999999999999999999999999999988777788999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      ++++|+|||+++.+||..+..|...+..+.-.+.|+|+++||+|+...|.++.+..+.++++.+..|||+||+.+.|+++
T Consensus        94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~  173 (193)
T KOG0093|consen   94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQ  173 (193)
T ss_pred             cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence            99999999999999999999999999988878999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC
Q psy1169         168 AFLETAKKIYQNIKDG  183 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~~  183 (218)
                      +|+.++..|-+...++
T Consensus       174 ~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  174 VFERLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999997765543

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=3.1e-35  Score=217.44  Aligned_cols=171  Identities=41%  Similarity=0.708  Sum_probs=153.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            35689999999999999999999999998888888888888777777888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||++++++|+.+..|+..+.... ...|+++|+||+|+...+.+..+++..++...+.+++++|++++.|++++|++
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            99999999999999999999876654 57899999999999877777778888888888899999999999999999999


Q ss_pred             HHHHHHHhhhcC
Q psy1169         172 TAKKIYQNIKDG  183 (218)
Q Consensus       172 i~~~~~~~~~~~  183 (218)
                      +.+.++......
T Consensus       162 l~~~~~~~~~~~  173 (199)
T cd04110         162 ITELVLRAKKDN  173 (199)
T ss_pred             HHHHHHHhhhcc
Confidence            999998765544

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=7.3e-35  Score=217.00  Aligned_cols=180  Identities=61%  Similarity=1.023  Sum_probs=159.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +.+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45679999999999999999999999988888888888888888888888889999999999999998899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||+++.++|+.+..|+..+........|+++++||.|+.+.+.+..++..+++...+++++++||+++.|++++|.+
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998877665568999999999999887778888899999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCcccccccc
Q psy1169         172 TAKKIYQNIKDGKLNANMTE  191 (218)
Q Consensus       172 i~~~~~~~~~~~~~~~~~~~  191 (218)
                      +++.+++...+.......++
T Consensus       163 l~~~~~~~~~~~~~~~~~~~  182 (210)
T PLN03108        163 TAAKIYKKIQDGVFDVSNES  182 (210)
T ss_pred             HHHHHHHHhhhccccccccc
Confidence            99999887655544333333

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1e-34  Score=217.43  Aligned_cols=168  Identities=23%  Similarity=0.462  Sum_probs=149.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      ..-..+||+++|+.|||||||+++|..+.|...+.++.+..+. ..+.+++..+.+.||||+|++.|..+...+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            3356799999999999999999999999999999999887764 457788899999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCCC-cEEE
Q psy1169          91 ALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEENDL-IFVE  156 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  156 (218)
                      +|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||.|+..            .+.+..++++++++..++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999984 78999887655 5789999999999964            366888999999999998 5999


Q ss_pred             eccCCCC-CHHHHHHHHHHHHHHhh
Q psy1169         157 ASAMTGE-NVEQAFLETAKKIYQNI  180 (218)
Q Consensus       157 ~S~~~~~-~i~~~~~~i~~~~~~~~  180 (218)
                      |||++|. |++++|..++..+.+..
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHhc
Confidence            9999997 89999999999887753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=4e-35  Score=211.04  Aligned_cols=164  Identities=88%  Similarity=1.367  Sum_probs=151.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999888888888888777778888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      ||++++++|+.+..|+..+.....++.|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|..+.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766678999999999999888878888899999988999999999999999999999998


Q ss_pred             HHHH
Q psy1169         175 KIYQ  178 (218)
Q Consensus       175 ~~~~  178 (218)
                      .+++
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.2e-34  Score=215.74  Aligned_cols=188  Identities=46%  Similarity=0.792  Sum_probs=161.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +.+||+|+|++|||||||+++|....+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            3589999999999999999999999988888888888887777766 466789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      +|||++++++|+.+..|+..+..... ...|+++|+||.|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998876543 35788999999999877778888899999998899999999999999999999


Q ss_pred             HHHHHHHhhhcCcccccccccccccccCCC
Q psy1169         172 TAKKIYQNIKDGKLNANMTESGVQHKERGG  201 (218)
Q Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (218)
                      |.+.+.++...........-..++.....+
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (211)
T cd04111         161 LTQEIYERIKRGELCALDGWDGVKSGFPAG  190 (211)
T ss_pred             HHHHHHHHhhcCCCCccccccccccCCCcc
Confidence            999999887766544444444444444433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=3.6e-35  Score=218.72  Aligned_cols=187  Identities=30%  Similarity=0.524  Sum_probs=151.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|.+|||||||+++|+.+.+.. +.++.+.++....+    ..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 46666665543332    5678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC-------------------CccccHHHHHHHHHhCC-----
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG-------------------SRDVRYDEAKKFAEEND-----  151 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~-----  151 (218)
                      |++++++|+.+..|+..+......+.|+++|+||.|+..                   .+.+..++++.++...+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988877765556799999999999975                   57788899999998865     


Q ss_pred             ---------CcEEEeccCCCCCHHHHHHHHHHHHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169         152 ---------LIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS  217 (218)
Q Consensus       152 ---------~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  217 (218)
                               ++|+|+||++|.|++++|..+++.+++.............-.+.          ..+++.+|.+||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVN----------LPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc----------CCCcccCCCCCC
Confidence                     67999999999999999999999998765544332222211222          234566788887

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.4e-34  Score=212.27  Aligned_cols=167  Identities=42%  Similarity=0.734  Sum_probs=151.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998878888888887777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++++|..+..|+..+........|+++++||.|+.+.+.+..+++..++...+++++++||+++.|++++|.++++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998887765678999999999998777777788888888888899999999999999999999999


Q ss_pred             HHHhhhc
Q psy1169         176 IYQNIKD  182 (218)
Q Consensus       176 ~~~~~~~  182 (218)
                      +..+...
T Consensus       161 ~~~~~~~  167 (188)
T cd04125         161 IIKRLEE  167 (188)
T ss_pred             HHHHhhc
Confidence            9775443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=4.8e-35  Score=214.99  Aligned_cols=166  Identities=32%  Similarity=0.519  Sum_probs=145.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.|||++|++++..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999888887777776554 3445577888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      +++.++|+.+..|+..+.....   .+.|+++|+||+|+...+.+...++..++...+++++++||+++.|++++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888766542   5789999999999987777777788888888889999999999999999999999


Q ss_pred             HHHHHhhhcC
Q psy1169         174 KKIYQNIKDG  183 (218)
Q Consensus       174 ~~~~~~~~~~  183 (218)
                      +.+.++...+
T Consensus       160 ~~l~~~~~~~  169 (190)
T cd04144         160 RALRQQRQGG  169 (190)
T ss_pred             HHHHHhhccc
Confidence            9887665544

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0088|consensus

Probab=100.00  E-value=3.3e-36  Score=203.59  Aligned_cols=180  Identities=32%  Similarity=0.597  Sum_probs=166.7

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169           7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR   86 (218)
Q Consensus         7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (218)
                      .+...+...+|++++|..=+|||||+-|+..+.|......+....+..+.+.+++....+.||||+|+++|..+-+-|++
T Consensus         5 ~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYR   84 (218)
T KOG0088|consen    5 TNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYR   84 (218)
T ss_pred             ccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEe
Confidence            34456688999999999999999999999999999988888888888888888889999999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      .++++|+|||++++.||+.+++|...+....+..+-++||+||+||.+.+.+..+++..++..-++.|+++||+++.|+.
T Consensus        85 gSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   85 GSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGIS  164 (218)
T ss_pred             CCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence            99999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCccc
Q psy1169         167 QAFLETAKKIYQNIKDGKLN  186 (218)
Q Consensus       167 ~~~~~i~~~~~~~~~~~~~~  186 (218)
                      ++|..+....+++....+..
T Consensus       165 elFe~Lt~~MiE~~s~~qr~  184 (218)
T KOG0088|consen  165 ELFESLTAKMIEHSSQRQRT  184 (218)
T ss_pred             HHHHHHHHHHHHHhhhcccc
Confidence            99999999999986554433

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.3e-34  Score=212.87  Aligned_cols=190  Identities=40%  Similarity=0.726  Sum_probs=158.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      +||+|+|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988764 5667777777666777888899999999999999999889999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      ||+++.++|+.+..|+..+......+.|+++|+||.|+...+.+..+++..++...+.+|+++||+++.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999888776568999999999999776767777888888888899999999999999999999999


Q ss_pred             HHHHhhhcCcccccccccccccccCCCCCcCCCCCCCCCCCCC
Q psy1169         175 KIYQNIKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCS  217 (218)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  217 (218)
                      .+.+.....            ........+...+..+++.+||
T Consensus       161 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         161 ELKHRKYEQ------------PDEGKFKISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHhcccc------------CCCCcEEeccccCcccccCCCC
Confidence            987642111            1111112445556666777777

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.3e-34  Score=208.68  Aligned_cols=166  Identities=47%  Similarity=0.848  Sum_probs=151.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35799999999999999999999999999888899888887777888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      +|||++++++|+.+..|+..+......+.|+++++||.|+.+.+.+..+++..++...+.+++++||+++.|++++|.++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998887665689999999999998777777788888888888999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         173 AKKIYQ  178 (218)
Q Consensus       173 ~~~~~~  178 (218)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=8.4e-35  Score=211.56  Aligned_cols=164  Identities=28%  Similarity=0.519  Sum_probs=146.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +...+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..+...+++.+|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            35678999999999999999999999999988888987666 45677888999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCCC-cEEEe
Q psy1169          92 LMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEENDL-IFVEA  157 (218)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~  157 (218)
                      |+|||++++.+|+.+ ..|+..+.... ++.|+++|+||.|+..            .+.+..++++++++..++ +|+||
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 78999887765 5799999999999964            345888999999999995 89999


Q ss_pred             ccCCCCC-HHHHHHHHHHHHH
Q psy1169         158 SAMTGEN-VEQAFLETAKKIY  177 (218)
Q Consensus       158 S~~~~~~-i~~~~~~i~~~~~  177 (218)
                      ||+++.| ++++|..+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999988654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=9.9e-35  Score=209.97  Aligned_cols=160  Identities=29%  Similarity=0.587  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||+.++..+.|..++.+|.+..+ ...+.+++..+.+.||||+|++++..+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999988889987766 445667888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCCc----------cccHHHHHHHHHhCCC-cEEEeccCCCC
Q psy1169          96 DITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSR----------DVRYDEAKKFAEENDL-IFVEASAMTGE  163 (218)
Q Consensus        96 d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~~  163 (218)
                      |+++++||+.+ ..|+..+.... .+.|+++|+||.|+.+.+          .+..+++.+++...+. .|+||||+++.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999887665 579999999999996543          4778899999999887 59999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy1169         164 NVEQAFLETAKKIY  177 (218)
Q Consensus       164 ~i~~~~~~i~~~~~  177 (218)
                      |++++|..+++.++
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=3.3e-34  Score=207.27  Aligned_cols=164  Identities=29%  Similarity=0.474  Sum_probs=147.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.|||++|.+.+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999999888888877555 34466788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||++++.+|+.+..|+..+.... ..++|+++|+||.|+.+.+.+..+++..+++..+++|+++||+++.|++++|++++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999888776643 35799999999999987788888899999988899999999999999999999999


Q ss_pred             HHHHHh
Q psy1169         174 KKIYQN  179 (218)
Q Consensus       174 ~~~~~~  179 (218)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            988763

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=4.2e-34  Score=208.33  Aligned_cols=167  Identities=37%  Similarity=0.716  Sum_probs=149.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC----------CeEEEEEEeeCcchhhhhhhhH
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------GEKIKLQIWDTAGQERFRAVTR   82 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~   82 (218)
                      ++.+||+++|++|||||||++++....+...+.++.+.++....+.+.          +..+.+.|||++|++.+..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999998888888888766665553          4568999999999999999999


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT  161 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (218)
                      .+++++|++|+|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999998886643 35789999999999987777887889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q psy1169         162 GENVEQAFLETAKKIYQN  179 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~  179 (218)
                      +.|++++|+++++.++++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.9e-34  Score=212.64  Aligned_cols=164  Identities=30%  Similarity=0.571  Sum_probs=148.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999889999999998888877754 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      ||++++++|+.+..|+..+.....   .+.|+++|+||.|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999998876542   35789999999999877778888889999988999999999999999999999


Q ss_pred             HHHHHHHh
Q psy1169         172 TAKKIYQN  179 (218)
Q Consensus       172 i~~~~~~~  179 (218)
                      +.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=2.9e-34  Score=210.67  Aligned_cols=167  Identities=33%  Similarity=0.545  Sum_probs=147.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.||||+|++++..++..+++.+|++|+|
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            58999999999999999999999988888878776665 45666788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||++++++|+.+..|+..+.... ..+.|+++++||.|+...+.+...++..++...+.+++++||+++.|++++|.+++
T Consensus        84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~  163 (189)
T PTZ00369         84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV  163 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998876653 35789999999999977776777778888888888999999999999999999999


Q ss_pred             HHHHHhhhc
Q psy1169         174 KKIYQNIKD  182 (218)
Q Consensus       174 ~~~~~~~~~  182 (218)
                      +.+....++
T Consensus       164 ~~l~~~~~~  172 (189)
T PTZ00369        164 REIRKYLKE  172 (189)
T ss_pred             HHHHHHhhc
Confidence            988765443

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=7.4e-34  Score=204.43  Aligned_cols=164  Identities=49%  Similarity=0.867  Sum_probs=149.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999988888888888888778888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      ||++++++|..+..|+..+......+.|+++++||.|+...+.+..+++..++...+++++++||+++.|++++|..+.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999887766567999999999999877777778899999999999999999999999999999998


Q ss_pred             HHHH
Q psy1169         175 KIYQ  178 (218)
Q Consensus       175 ~~~~  178 (218)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd01869         162 EIKK  165 (166)
T ss_pred             HHHh
Confidence            7753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=7.4e-34  Score=203.42  Aligned_cols=160  Identities=42%  Similarity=0.783  Sum_probs=147.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||+++++.+.+.+.+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888889888887778888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++++|+.+..|+..+......+.|+++|+||.|+...+.+..+++..+++..+.+|+++||+++.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998877665579999999999998888788889999999888999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1e-33  Score=204.12  Aligned_cols=167  Identities=65%  Similarity=1.112  Sum_probs=152.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +++.+||+|+|.+|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||++|++++..+...+++.+|++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            45679999999999999999999999988888888888888778888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||++++++++.+..|+..+.....++.|+++|+||.|+...+.+..++++.++...++.++++|++++.|++++|.+
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887766678999999999999877777778888898888999999999999999999999


Q ss_pred             HHHHHHH
Q psy1169         172 TAKKIYQ  178 (218)
Q Consensus       172 i~~~~~~  178 (218)
                      +.+.+++
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9988765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.2e-33  Score=203.20  Aligned_cols=162  Identities=38%  Similarity=0.701  Sum_probs=147.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888887777777777778899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |+++.++++.+..|+..+........|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|+++++.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999998877665678999999999998777777788888888888999999999999999999999887


Q ss_pred             HH
Q psy1169         176 IY  177 (218)
Q Consensus       176 ~~  177 (218)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=5.2e-34  Score=206.97  Aligned_cols=160  Identities=28%  Similarity=0.528  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..+...+++.+|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            6999999999999999999999999988888887766 456778889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169          96 DITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEENDL-IFVEASAMT  161 (218)
Q Consensus        96 d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~  161 (218)
                      |+++++||+.+ ..|+..+.... ++.|+++|+||.||..            .+.+..++++++++..++ +|+|+||++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            99999999996 78998887765 5799999999999954            245788999999999997 799999999


Q ss_pred             CCC-HHHHHHHHHHHHH
Q psy1169         162 GEN-VEQAFLETAKKIY  177 (218)
Q Consensus       162 ~~~-i~~~~~~i~~~~~  177 (218)
                      |.+ ++++|..+++.++
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=7.8e-34  Score=203.48  Aligned_cols=161  Identities=34%  Similarity=0.692  Sum_probs=152.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.|||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998889888999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      +++++||+.+..|+..+........|+++++||.|+...+.+..++++.++..++.+|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988866799999999999988788998999999999999999999999999999999999987


Q ss_pred             H
Q psy1169         177 Y  177 (218)
Q Consensus       177 ~  177 (218)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.2e-33  Score=207.54  Aligned_cols=162  Identities=26%  Similarity=0.519  Sum_probs=142.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+++|+.|||||||+.++..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            489999999999999999999999998888889876653 4456788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCC-CcEEEeccC
Q psy1169          95 YDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEEND-LIFVEASAM  160 (218)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~  160 (218)
                      ||++++.+|+.+. .|+..+.... .++|+++|+||.|+.+.+            .+..++++.++...+ ++|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 5877776544 579999999999996542            356678888998887 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~  178 (218)
                      +|.|++++|.++++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.6e-33  Score=208.88  Aligned_cols=164  Identities=24%  Similarity=0.452  Sum_probs=142.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999889999877664 56678889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169          96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEASAMT  161 (218)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~  161 (218)
                      |++++++|+.+. .|...+... .++.|+++|+||.|+...            ..+..+++..+++..++ .|+|+||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999995 566555443 368999999999999642            13667889999999885 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHhhh
Q psy1169         162 GEN-VEQAFLETAKKIYQNIK  181 (218)
Q Consensus       162 ~~~-i~~~~~~i~~~~~~~~~  181 (218)
                      +.+ ++++|..++..++...+
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccC
Confidence            885 99999999998876544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.6e-33  Score=202.77  Aligned_cols=162  Identities=33%  Similarity=0.666  Sum_probs=147.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888999998888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcC-----CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTN-----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      |++++++++.+..|+..+.....     .+.|+++|+||.|+...+....++.+.++...+++++++||+++.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999998877653     4799999999999976666677888888888889999999999999999999


Q ss_pred             HHHHHHH
Q psy1169         171 ETAKKIY  177 (218)
Q Consensus       171 ~i~~~~~  177 (218)
                      +|++.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=3.1e-33  Score=201.02  Aligned_cols=163  Identities=54%  Similarity=0.915  Sum_probs=149.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+|+|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |||++++.+++.+..|+..+......+.|+++|+||.|+...+....++...++...+++++++||+++.|++++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999988777655799999999999987777777888888888889999999999999999999998


Q ss_pred             HHH
Q psy1169         174 KKI  176 (218)
Q Consensus       174 ~~~  176 (218)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.7e-33  Score=204.03  Aligned_cols=162  Identities=27%  Similarity=0.504  Sum_probs=142.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|+.|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999998887778888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC-----CccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG-----SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      |++++.+|+.+..|+..+........| ++|+||+|+..     .+....++.+++++..+++++++||+++.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776545567 67899999852     111223567788888889999999999999999999


Q ss_pred             HHHHHHHH
Q psy1169         171 ETAKKIYQ  178 (218)
Q Consensus       171 ~i~~~~~~  178 (218)
                      ++.+.+++
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99998865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=6.2e-33  Score=199.45  Aligned_cols=162  Identities=47%  Similarity=0.865  Sum_probs=146.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+|+|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            56899999999999999999999998888888888888777788888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |||++++++|+.+..|+..+......+.|+++|+||+|+...+++..+++..++...+. .++++||++|.|++++|.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999988776667899999999999987777777888888888765 58999999999999999998


Q ss_pred             HHH
Q psy1169         173 AKK  175 (218)
Q Consensus       173 ~~~  175 (218)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=5.9e-33  Score=203.51  Aligned_cols=163  Identities=29%  Similarity=0.524  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      +||+|+|++|+|||||+++|.++.+...+.++.+.++... +... +..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999999888888877766443 4454 6788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc----cccHHHHHHHHHhCCC-cEEEeccCCCCCHHHH
Q psy1169          95 YDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR----DVRYDEAKKFAEENDL-IFVEASAMTGENVEQA  168 (218)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~  168 (218)
                      ||+++.++|+.+. .|+..+.... ++.|+++|+||.|+....    .+..+++.+++...++ +++++||+++.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 4877665543 579999999999986532    4566788889988887 8999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy1169         169 FLETAKKIYQNI  180 (218)
Q Consensus       169 ~~~i~~~~~~~~  180 (218)
                      |..+++.+....
T Consensus       159 f~~l~~~~~~~~  170 (187)
T cd04132         159 FDTAIEEALKKE  170 (187)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=6.5e-33  Score=198.53  Aligned_cols=160  Identities=63%  Similarity=1.105  Sum_probs=147.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888887788888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++++++.+..|+..+.....++.|+++++||.|+...+.+..+++..++...++.++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877666789999999999998777777888899999988999999999999999999999865

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=3.3e-33  Score=202.53  Aligned_cols=160  Identities=26%  Similarity=0.505  Sum_probs=139.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888888877664 3456788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEeccC
Q psy1169          95 YDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEASAM  160 (218)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~  160 (218)
                      ||++++++|+.+. .|+..+.... ++.|+++|+||.|+...            +.+..+++++++...+ +.|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999996 5887776644 57999999999998643            4566778888888776 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAKKI  176 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~  176 (218)
                      +|.|++++|+.++..+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=8.1e-33  Score=207.03  Aligned_cols=168  Identities=33%  Similarity=0.530  Sum_probs=147.5

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      .......+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+
T Consensus         7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   86 (219)
T PLN03071          7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (219)
T ss_pred             CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence            33447779999999999999999999999999888899998888777777777889999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |++|+|||++++.+|+.+..|+..+.... .+.|+++|+||.|+.. +.+..++. .++...++.|+++||+++.|++++
T Consensus        87 ~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~  163 (219)
T PLN03071         87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP  163 (219)
T ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHH
Confidence            99999999999999999999999887654 5799999999999953 33343444 677778899999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |.+|++.+.+.
T Consensus       164 f~~l~~~~~~~  174 (219)
T PLN03071        164 FLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHcC
Confidence            99999988764

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=2.8e-32  Score=200.92  Aligned_cols=164  Identities=34%  Similarity=0.641  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      +||+|+|++|+|||||+++|..+.+.. .+.++.+..+....+.+++..+.+.+||++|.+++..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988874 5777888777777888888999999999999999998899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC----ccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS----RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      ||+++..+|+.+..|+..+.... .+.|+++|+||.|+...    +.+...++..++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998887643 57999999999998532    34455667788888888999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1169         171 ETAKKIYQNI  180 (218)
Q Consensus       171 ~i~~~~~~~~  180 (218)
                      ++.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999997654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=8.1e-33  Score=198.34  Aligned_cols=160  Identities=34%  Similarity=0.534  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.|||++|++++..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988877777765 333556677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      |+++..+|+.+..|+..+.... ..+.|+++++||+|+...+.+..++...++...+.+++++||+++.|++++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998887654 357999999999999776667767788888888889999999999999999999987


Q ss_pred             HH
Q psy1169         175 KI  176 (218)
Q Consensus       175 ~~  176 (218)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=2.2e-32  Score=196.17  Aligned_cols=163  Identities=57%  Similarity=0.945  Sum_probs=149.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|+|||||++++.+..+.....++.+.++....+..++..+.+.+||++|++.+......+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++.+++.+..|+..+......+.|+++++||.|+...+.+..+.+.+++...+++++++|+.++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998877766789999999999997766777788888888889999999999999999999999988


Q ss_pred             HHH
Q psy1169         176 IYQ  178 (218)
Q Consensus       176 ~~~  178 (218)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            765

Rab GTPases are implicated in vesicle trafficking.

>KOG0081|consensus

Probab=100.00  E-value=4.6e-35  Score=198.18  Aligned_cols=174  Identities=37%  Similarity=0.675  Sum_probs=159.0

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC---------CeEEEEEEeeCcchhhhhhh
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH---------GEKIKLQIWDTAGQERFRAV   80 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~   80 (218)
                      -.|++.||.+.+|++|+|||||+.++.++.|......+.++++..+.+.++         +..+.+++|||+|+++|+++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            467899999999999999999999999999999999999999988877653         34689999999999999999


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                      ...+++.+-+++++||+++..||-++.+|+.++..+.- .+..|++++||+||.+.+.+..+++.+++..+++||||+||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence            99999999999999999999999999999999887653 45669999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169         160 MTGENVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~~~~  183 (218)
                      -++.|+++..+.+++.+++++..-
T Consensus       164 ~tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             ccCcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998886543

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.3e-32  Score=196.45  Aligned_cols=162  Identities=36%  Similarity=0.708  Sum_probs=143.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+++|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999999999988887888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ++++++++.+..|+..+..... ...|+++|+||.|+...+.  ...+++.+++...+.+++++||+++.|++++|..+.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999988765432 3578999999999965433  234567778888888999999999999999999999


Q ss_pred             HHHHH
Q psy1169         174 KKIYQ  178 (218)
Q Consensus       174 ~~~~~  178 (218)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88854

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.9e-32  Score=197.01  Aligned_cols=160  Identities=33%  Similarity=0.602  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++.+..+...++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888888888888877777777888899999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++++++.+..|+..+..... +.|+++|+||.|+... ... .+..+++....++++++||+++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999887664 8999999999999733 333 34556777778899999999999999999999988


Q ss_pred             HHH
Q psy1169         176 IYQ  178 (218)
Q Consensus       176 ~~~  178 (218)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.2e-32  Score=195.93  Aligned_cols=159  Identities=33%  Similarity=0.576  Sum_probs=143.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC--CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +||+++|++|+|||||++++..+.+...+.++.+.++....+.+.  +..+.+.+||+||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888888888888877777676  778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |||++++++|+.+..|+..+.... .+.|+++|+||.|+...+.+..+++..++...+++++++|++++.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998876544 5799999999999987777777888889998999999999999999999999887


Q ss_pred             HH
Q psy1169         174 KK  175 (218)
Q Consensus       174 ~~  175 (218)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.5e-32  Score=196.13  Aligned_cols=160  Identities=33%  Similarity=0.550  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|.+|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6999999999999999999998888777777776555 455667888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      |+++.++|+.+..|+..+.... ..+.|+++++||.|+...+.+..++...+++..+++++++||+++.|++++|.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988876543 357999999999999877777777778888888899999999999999999999987


Q ss_pred             HH
Q psy1169         175 KI  176 (218)
Q Consensus       175 ~~  176 (218)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            65

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3.9e-32  Score=196.20  Aligned_cols=162  Identities=40%  Similarity=0.741  Sum_probs=146.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-hhhHhhhccCCEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAAGALM   93 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   93 (218)
                      .+||+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999999888888888888888888888889999999999999886 578889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC---CCCHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT---GENVEQAF  169 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~~  169 (218)
                      |||++++++|+.+..|+..+.... ..++|+++|+||.|+...+.+..+++.+++...+++|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887654 35799999999999988888887888899998899999999999   88999999


Q ss_pred             HHHHHHH
Q psy1169         170 LETAKKI  176 (218)
Q Consensus       170 ~~i~~~~  176 (218)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.7e-31  Score=199.22  Aligned_cols=171  Identities=47%  Similarity=0.761  Sum_probs=146.6

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      ...+....+||+|+|++|||||||+++|+...+. .+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus         7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   85 (211)
T PLN03118          7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN   85 (211)
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence            3445677899999999999999999999988764 566777777777777788888999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHH-HHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169          88 AAGALMVYDITRRSTYNHLSS-WLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV  165 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (218)
                      +|++|+|||++++++|+.+.. |...+.... ..+.|+++|+||.|+...+.+..++...++...+++|+++||+++.|+
T Consensus        86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v  165 (211)
T PLN03118         86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV  165 (211)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999976 555444332 246889999999999877777777888888888899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy1169         166 EQAFLETAKKIYQN  179 (218)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (218)
                      +++|++|.+.+.+.
T Consensus       166 ~~l~~~l~~~~~~~  179 (211)
T PLN03118        166 EQCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999775

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=5.6e-32  Score=195.39  Aligned_cols=162  Identities=38%  Similarity=0.663  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+|++|
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46799999999999999999999999988888888888877777888889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc----CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCCCCHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT----NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQ  167 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~  167 (218)
                      +|||++++++++.+..|+..+....    ..+.|+++++||.|+. .+.+..+++++++...+ .+++++||+++.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            9999999999999999988776543    2468999999999986 55566788888988876 4799999999999999


Q ss_pred             HHHHHHHH
Q psy1169         168 AFLETAKK  175 (218)
Q Consensus       168 ~~~~i~~~  175 (218)
                      +|..+++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=3e-32  Score=195.48  Aligned_cols=160  Identities=32%  Similarity=0.524  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|.+|+|||||+++++.+.+...+.++.. +.....+.+++..+.+.|||++|.+.+..++..+++++|++|+||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999998887777664 444566777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      |++++++|+.+..|+..+.... ..+.|+++|+||.|+...+.+...+...++...+++++++||+++.|++++|.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999988877653 257999999999999776666666778888777889999999999999999999986


Q ss_pred             HH
Q psy1169         175 KI  176 (218)
Q Consensus       175 ~~  176 (218)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=4.6e-32  Score=194.91  Aligned_cols=159  Identities=28%  Similarity=0.415  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||+++++++.+...+.++....+ ...+..+...+.+.+||++|++++..+...+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777765444 444556778889999999999999988899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |+++.++|+.+..|+..+.....   ++.|+++|+||.|+...+++...++..++...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887766432   579999999999997767777778888888888899999999999999999998


Q ss_pred             HHH
Q psy1169         173 AKK  175 (218)
Q Consensus       173 ~~~  175 (218)
                      ++.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=8.8e-32  Score=192.68  Aligned_cols=160  Identities=34%  Similarity=0.581  Sum_probs=139.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|.+|||||||++++....+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988877777777776667777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++.+++.+..|+..+.... ++.|+++++||.|+...  . ..+...++...+++++++||+++.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999998886543 57899999999998432  1 244556677778899999999999999999999998


Q ss_pred             HHHh
Q psy1169         176 IYQN  179 (218)
Q Consensus       176 ~~~~  179 (218)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.2e-31  Score=192.23  Aligned_cols=162  Identities=45%  Similarity=0.803  Sum_probs=147.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|+|||||+++|++..+.....++.+..+....+.+++..+.+.+||++|++++...+..+++.+|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998887778888777778888888899999999999999998899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      +|++++++++.+..|+..+.......+|+++++||.|+...+....++...++...+++++++|++++.|++++|+++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999888776678999999999999766667777888888888899999999999999999999988


Q ss_pred             HH
Q psy1169         175 KI  176 (218)
Q Consensus       175 ~~  176 (218)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.7e-32  Score=196.31  Aligned_cols=158  Identities=27%  Similarity=0.555  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|||||||+.+++.+.+...+.++....+ ...+.+++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999999888888876444 445567888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEeccCC
Q psy1169          96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEASAMT  161 (218)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~  161 (218)
                      |++++++|+.+. .|+..+.... ++.|+++|+||.|+...            +.+..+++.+++...+ ++++++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999995 5887776544 57999999999999643            2467788899998877 4899999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKK  175 (218)
Q Consensus       162 ~~~i~~~~~~i~~~  175 (218)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999988763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.3e-31  Score=191.73  Aligned_cols=160  Identities=36%  Similarity=0.686  Sum_probs=145.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||++++++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++++|+.+..|+..+......+.|+++++||.|+...+....++...++...+++++++|++++.|++++|.++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998876554579999999999997666677778888888888999999999999999999999764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=6e-32  Score=198.38  Aligned_cols=161  Identities=28%  Similarity=0.477  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      .||+|+|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.|||++|++.+..++..+++.+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999998888888776653 45556778899999999999999888999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCC-CcEEEeccCC
Q psy1169          96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEEND-LIFVEASAMT  161 (218)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~  161 (218)
                      |++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.+            .+..+++..++...+ ++|+++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 5888777644 579999999999997554            244566777777765 6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (218)
                      +.|++++|.++++.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999998864

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=9.8e-32  Score=192.95  Aligned_cols=161  Identities=37%  Similarity=0.584  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|||||||+++|.+..+...+.++....+ .....+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888777777665433 455567778899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      |++++++|+.+..|+..+.... ..+.|+++|+||.|+...+....+++..++...+.+++++||+++.|++++|+++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988776543 347899999999999877767777888888888899999999999999999999998


Q ss_pred             HHH
Q psy1169         175 KIY  177 (218)
Q Consensus       175 ~~~  177 (218)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.7e-31  Score=191.06  Aligned_cols=160  Identities=31%  Similarity=0.548  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999988887777766554 45556778888899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||+++..+|+.+..|+..+.... ..+.|+++|+||.|+.. +.....++.+++...+++++++||+++.|++++|++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988877654 35789999999999965 44556777788888888999999999999999999998


Q ss_pred             HHH
Q psy1169         174 KKI  176 (218)
Q Consensus       174 ~~~  176 (218)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.9e-31  Score=191.43  Aligned_cols=161  Identities=34%  Similarity=0.560  Sum_probs=140.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+++|++|+|||||++++++..+...+.++....+ .....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999999999999888777777766444 44456788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||+++.++|+.+..|+..+.... ..+.|+++++||+|+...+.+..++..+++...+.+++++||+++.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988877643 35789999999999987777777788888888888999999999999999999998


Q ss_pred             HHH
Q psy1169         174 KKI  176 (218)
Q Consensus       174 ~~~  176 (218)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.2e-31  Score=195.93  Aligned_cols=156  Identities=31%  Similarity=0.577  Sum_probs=139.6

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh
Q psy1169          21 IGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR  100 (218)
Q Consensus        21 ~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  100 (218)
                      +|..|||||||+++++.+.+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++++|++|+|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888889998888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         101 STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       101 ~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      .+|+.+..|+..+.... .++|+++|+||+|+.. +.+..+ ...++...++.|++|||+++.|++++|.++++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999888765 5799999999999854 334433 3467778889999999999999999999999998764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=4e-31  Score=189.81  Aligned_cols=160  Identities=28%  Similarity=0.550  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +||+|+|++|||||||++++...  .+...+.++.+.++....+.++ +..+.+.+||++|++.+..+...+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  6777888888888776666664 56789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      +|||++++++++.+..|+..+.... .+.|+++|+||.|+...+.+...+.+.+....+++++++||+++.|++++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998877654 579999999999997776677666777777778899999999999999999999


Q ss_pred             HHHH
Q psy1169         173 AKKI  176 (218)
Q Consensus       173 ~~~~  176 (218)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.3e-31  Score=196.13  Aligned_cols=166  Identities=19%  Similarity=0.235  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh--------hhhHhhhcc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTRSYYRG   87 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~   87 (218)
                      +||+|+|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.||||+|...+.        ......++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988888887766666666778888999999999964321        123445789


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-hCCCcEEEeccCCCC
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-ENDLIFVEASAMTGE  163 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~  163 (218)
                      +|++|+|||++++++|+.+..|++.+....   ..++|+++|+||+|+...+.+..++.+.++. ..+++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998877654   3679999999999997766666666766654 468999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhh
Q psy1169         164 NVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~~~~  181 (218)
                      |++++|+.+++.++.+.+
T Consensus       161 ~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         161 HILLLFKELLISATTRGR  178 (198)
T ss_pred             CHHHHHHHHHHHhhccCC
Confidence            999999999998876533

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=4.9e-31  Score=188.70  Aligned_cols=161  Identities=37%  Similarity=0.689  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||+++|....+...+.++.........+.+.+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777677766766677777778889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |+++.++++.+..|+..+......+.|+++++||+|+...+.+..++..+++...+.+++++|++++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988887766689999999999998776677778888888889999999999999999999999876


Q ss_pred             H
Q psy1169         176 I  176 (218)
Q Consensus       176 ~  176 (218)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=9.4e-31  Score=189.21  Aligned_cols=164  Identities=39%  Similarity=0.674  Sum_probs=144.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888887788888877777788888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCCCCHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~  170 (218)
                      |++++++++.+..|...+.....    .++|+++|+||.|+...+....++...++...+ .+++++|++++.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999888876654432    379999999999997656566677778887776 7899999999999999999


Q ss_pred             HHHHHHHHh
Q psy1169         171 ETAKKIYQN  179 (218)
Q Consensus       171 ~i~~~~~~~  179 (218)
                      ++.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999998875

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=3.7e-31  Score=194.39  Aligned_cols=158  Identities=21%  Similarity=0.382  Sum_probs=129.3

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHHhC-----CCCCCCCCceee-eEEEEE--------EEECCeEEEEEEeeCcchhhhhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLH-QFTEQ-----KFMPDCPHTIGV-EFGTRI--------IEVHGEKIKLQIWDTAGQERFRA   79 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   79 (218)
                      .+||+++|+.|||||||+. ++.+.     .+...+.+|.+. +.....        ..+++..+.+.||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 56543     344566777752 222221        24678899999999999875  3


Q ss_pred             hhHhhhccCCEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCC-------------------Ccccc
Q psy1169          80 VTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG-------------------SRDVR  139 (218)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~-------------------~~~~~  139 (218)
                      +...+++++|++|+|||++++.+|+.+. .|+..+.... ++.|+++|+||.|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566899999999999999999999997 5888876654 5789999999999964                   36788


Q ss_pred             HHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169         140 YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      .++++++++..+++|+||||+++.|++++|..+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=3.3e-31  Score=191.06  Aligned_cols=163  Identities=18%  Similarity=0.247  Sum_probs=140.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ++.+||+++|.+|||||||+++|+++.+. ..+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            67899999999999999999999999988 88888888887777777888888999999999999888889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQAFL  170 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~  170 (218)
                      |+|||++++.+|+.+..|+..+..  ..+.|+++|+||.|+.+.+.....+..+++...++ .++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            999999999999999888876532  23799999999999965554433455667777776 369999999999999999


Q ss_pred             HHHHHHH
Q psy1169         171 ETAKKIY  177 (218)
Q Consensus       171 ~i~~~~~  177 (218)
                      .+.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998775

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=2.4e-30  Score=186.63  Aligned_cols=165  Identities=44%  Similarity=0.857  Sum_probs=146.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +...++|+++|++|+|||||++++....+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++.+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999998888777778888777777788888889999999999999998889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      ++|||+++..+++.+..|+..+......++|+++++||.|+...+.+.......+......+++++|++++.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998887766668999999999999877777766677777777788999999999999999999


Q ss_pred             HHHHH
Q psy1169         172 TAKKI  176 (218)
Q Consensus       172 i~~~~  176 (218)
                      +.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=5.1e-31  Score=191.06  Aligned_cols=159  Identities=30%  Similarity=0.597  Sum_probs=137.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEEC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI   97 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (218)
                      |+|+|++|+|||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999999888777766554 34556788889999999999999998999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCCC-cEEEeccCCCC
Q psy1169          98 TRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEENDL-IFVEASAMTGE  163 (218)
Q Consensus        98 ~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S~~~~~  163 (218)
                      +++++|+.+. .|+..+.... ++.|+++|+||.|+....            .+..+++.+++...+. .++++||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 5888776654 589999999999996532            2666778889988886 89999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy1169         164 NVEQAFLETAKKIYQ  178 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~  178 (218)
                      |++++|+.+++.+.+
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=7.2e-31  Score=199.19  Aligned_cols=160  Identities=22%  Similarity=0.411  Sum_probs=138.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|+|||||+++|+.+.+...+.++.+ ++....+.+++..+.+.||||+|.+.+..+...++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998887777765 455566778888899999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhh---------cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNL---------TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENV  165 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~---------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i  165 (218)
                      |+++.++|+.+..|+..+...         ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||+++.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998887653         224789999999999976667777778777754 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         166 EQAFLETAKKI  176 (218)
Q Consensus       166 ~~~~~~i~~~~  176 (218)
                      +++|++|.+.+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=6.7e-31  Score=187.25  Aligned_cols=153  Identities=21%  Similarity=0.382  Sum_probs=129.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|+.|+|||||+.+++.+.+...+.++ ...+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999998887765544 3334 45677888889999999999865     34678899999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCC--CCccccHHHHHHHHHhC-CCcEEEeccCCCCCHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLE--GSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |++++.+|+.+..|+..+..... .+.|+++|+||.|+.  ..+++..++++++++.. ++.|++|||+++.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999998877653 578999999999985  35677778888898775 589999999999999999999


Q ss_pred             HHHH
Q psy1169         172 TAKK  175 (218)
Q Consensus       172 i~~~  175 (218)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=4.9e-31  Score=189.56  Aligned_cols=160  Identities=31%  Similarity=0.512  Sum_probs=136.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhhhhHhhhccCCEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~   95 (218)
                      ||+|+|++|+|||||+++++...+...+.++....+ ...+.+++..+.+.+||++|++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998888777767654444 45556788889999999999885 3445677899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC-CCHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG-ENVEQAFLET  172 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~~i~~~~~~i  172 (218)
                      |++++++|+.+..|+..+....  ..+.|+++|+||+|+...+.+..+++.+++...+.+|+++|++++ .|++++|..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988877654  357999999999999777777778888899888899999999999 5999999999


Q ss_pred             HHHHH
Q psy1169         173 AKKIY  177 (218)
Q Consensus       173 ~~~~~  177 (218)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=2.6e-30  Score=185.03  Aligned_cols=159  Identities=50%  Similarity=0.898  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|+|||||+++|....+.....++.+.++....+.+++..+.+.+||++|++.+......+++.+|++|+||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777788888877777777788899999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      |++++.+|+.+..|+..+.... ..+.|+++++||+|+. .+....++...++...+++++++|+++|.|++++++.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999998887664 4589999999999996 3345567788888888999999999999999999999886


Q ss_pred             H
Q psy1169         175 K  175 (218)
Q Consensus       175 ~  175 (218)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=2.6e-30  Score=193.78  Aligned_cols=162  Identities=28%  Similarity=0.361  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc-cCCEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR-GAAGALM   93 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   93 (218)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|.+.  .....++. .+|++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 56666665566677777888889999999999883  23455666 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998877654 2579999999999998777777777888888888899999999999999999999


Q ss_pred             HHHHHHh
Q psy1169         173 AKKIYQN  179 (218)
Q Consensus       173 ~~~~~~~  179 (218)
                      ++.+...
T Consensus       159 ~~~~~~~  165 (221)
T cd04148         159 VRQIRLR  165 (221)
T ss_pred             HHHHHhh
Confidence            9988644

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04177 RSR1 RSR1 subgroup

Probab=99.98  E-value=2.8e-30  Score=186.17  Aligned_cols=161  Identities=31%  Similarity=0.558  Sum_probs=141.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            6899999999999999999999988777777776544 556667888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCCCCHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |++++++++.+..|...+.... ..+.|+++++||.|+...+....++..+++..++ ++++++||+++.|++++|.+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988776543 3579999999999998777777777888888877 7899999999999999999998


Q ss_pred             HHHH
Q psy1169         174 KKIY  177 (218)
Q Consensus       174 ~~~~  177 (218)
                      ..++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=99.98  E-value=4.2e-30  Score=182.95  Aligned_cols=158  Identities=54%  Similarity=0.924  Sum_probs=144.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |++++++++.+..|+..+......+.|+++++||+|+........++..+++...+.+++++|++++.|++++|++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999988877656799999999999975666677888889988899999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=1.7e-30  Score=188.13  Aligned_cols=156  Identities=26%  Similarity=0.495  Sum_probs=134.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            6899999999999999999999888888877753 444456677888899999999999999998899999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169          96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEENDL-IFVEASAMT  161 (218)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~  161 (218)
                      |++++++|+.+. .|+..+.... ++.|+++++||.|+..            .+.+..+++..++...+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 6887776533 5699999999999863            356677789999998887 899999999


Q ss_pred             CCCHHHHHHHHH
Q psy1169         162 GENVEQAFLETA  173 (218)
Q Consensus       162 ~~~i~~~~~~i~  173 (218)
                      +.|++++|+.++
T Consensus       159 ~~~v~~lf~~~~  170 (173)
T cd04130         159 QKNLKEVFDTAI  170 (173)
T ss_pred             CCCHHHHHHHHH
Confidence            999999998876

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=7.1e-30  Score=185.05  Aligned_cols=159  Identities=26%  Similarity=0.518  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988877777665443 445667888889999999999999888899999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169          96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEASAMT  161 (218)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~  161 (218)
                      |+.++.+|+.+. .|+..+... .++.|+++++||.|+.+.            +.+..+++..++...+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 577766654 478999999999998543            24566778888888775 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKI  176 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~  176 (218)
                      +.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=2.3e-29  Score=180.48  Aligned_cols=162  Identities=35%  Similarity=0.576  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||+++++...+...+.++....+ ......++..+.+.+||++|+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888877777765544 445567888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      |++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.....+..++...++++++++|++++.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888777643 57999999999999765556667777888888899999999999999999999998


Q ss_pred             HHHH
Q psy1169         175 KIYQ  178 (218)
Q Consensus       175 ~~~~  178 (218)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=2.8e-29  Score=179.27  Aligned_cols=158  Identities=34%  Similarity=0.544  Sum_probs=139.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+|+|++|+|||||+++++...+...+.++.. +.....+..++..+.+.+||++|+..+......+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777766 4445566677778899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      +++.++++.+..|+..+..... ...|+++++||+|+...+....+++..++...+.+++++|++++.|++++|++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877654 589999999999998767777788888888888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0083|consensus

Probab=99.97  E-value=8.7e-32  Score=177.27  Aligned_cols=161  Identities=40%  Similarity=0.779  Sum_probs=150.5

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEEC
Q psy1169          19 IIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI   97 (218)
Q Consensus        19 ~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (218)
                      +++|++++|||+|+-|+.++.|-. ...++.++++..+.+..++..+.+++|||+|+++|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            368999999999999998887764 5678899999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169          98 TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus        98 ~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      .+..||++...|+.++..+.+..+.+++++||+|+.+.+.+..++.+.++..+++|+.++||++|-|++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999988888999999999999998999999999999999999999999999999999999998886


Q ss_pred             Hh
Q psy1169         178 QN  179 (218)
Q Consensus       178 ~~  179 (218)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            64

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=5e-29  Score=184.18  Aligned_cols=161  Identities=26%  Similarity=0.403  Sum_probs=134.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+++|++|+|||||+++|+...+...+.++.. +.....+.+.+..+.+.|||++|+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988777666654 3445566677778899999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCC-CccccHHHHHHHHH-hCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEG-SRDVRYDEAKKFAE-ENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ++++.+++.+..|+..+..... .+.|+++|+||.|+.. .+.+..++..+... ..+.+++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999887776554 4799999999999865 34444444444443 4567899999999999999999999


Q ss_pred             HHHHH
Q psy1169         174 KKIYQ  178 (218)
Q Consensus       174 ~~~~~  178 (218)
                      +.+..
T Consensus       160 ~~~~~  164 (198)
T cd04147         160 RQANL  164 (198)
T ss_pred             HHhhc
Confidence            87753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0395|consensus

Probab=99.97  E-value=2.7e-29  Score=183.50  Aligned_cols=164  Identities=36%  Similarity=0.520  Sum_probs=151.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+++|.+|+|||+|..+++...|...+.++++ +.+.+.+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999988 5557777889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      ||++++..||+.+..++..+..... ..+|+++|+||+|+.+.+.+..+++.+++..++++|+|+||+.+.+++++|..+
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999998844333 468999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         173 AKKIYQ  178 (218)
Q Consensus       173 ~~~~~~  178 (218)
                      ++.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998866

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=3.3e-28  Score=177.24  Aligned_cols=163  Identities=34%  Similarity=0.506  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      .||+|+|++|+|||||+++|....+...+.++....+ ...+...+..+.+.+||+||++++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888776666655444 445566777888999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      |+++.++++.+..|+..+.... ..+.|+++++||+|+...+.+..++...++...+.+++++|++++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999888776643 357899999999999766666666777778888889999999999999999999998


Q ss_pred             HHHHh
Q psy1169         175 KIYQN  179 (218)
Q Consensus       175 ~~~~~  179 (218)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            88653

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.4e-29  Score=181.75  Aligned_cols=153  Identities=20%  Similarity=0.321  Sum_probs=125.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      +|+++|++|||||||+++|.+..+...+.++.+...    ..++...+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999998888777777776543    2344567889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH----HHHHHHHHhCCCcEEEeccCC------CCCHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY----DEAKKFAEENDLIFVEASAMT------GENVE  166 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~i~  166 (218)
                      +++..++..+..|+..+.... +++|+++|+||.|+...+.+..    ..+..++...++.++++||++      +.|+.
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999988888776443 6899999999999976654321    123455566678899999888      89999


Q ss_pred             HHHHHHHH
Q psy1169         167 QAFLETAK  174 (218)
Q Consensus       167 ~~~~~i~~  174 (218)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99988874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=2.5e-28  Score=177.09  Aligned_cols=159  Identities=31%  Similarity=0.534  Sum_probs=132.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      .||+|+|++|||||||+++|....+...+.++....+. ..+.+++..+.+.+|||+|++.+..+...++..+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999988877777765553 45567888899999999999998888888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169          96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEASAMT  161 (218)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~  161 (218)
                      |+++.++|+.+. .|+..+.... .+.|+++++||.|+...            ..+...+.++++...+. .++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 4777666543 57999999999998543            22344667777777654 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKI  176 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~  176 (218)
                      +.|++++|.++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1e-28  Score=177.90  Aligned_cols=155  Identities=19%  Similarity=0.349  Sum_probs=122.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|+|||||+++|....+. .+.++.+.++.  .+.  ...+.+.+||++|++.+..++..+++.+|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999877664 34566665543  222  24578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----NDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~  166 (218)
                      +|||+++..++..+..|+..+.... ..+.|+++|+||+|+.+.  +..+++..++..     ..+.++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            9999999999999888877665432 246899999999998543  344566565432     23468999999999999


Q ss_pred             HHHHHHHH
Q psy1169         167 QAFLETAK  174 (218)
Q Consensus       167 ~~~~~i~~  174 (218)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=2.7e-28  Score=178.70  Aligned_cols=162  Identities=28%  Similarity=0.491  Sum_probs=134.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      .||+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+||++|++.+......++..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998888776666655444 345566778889999999999888777777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCC----------CccccHHHHHHHHHhCCC-cEEEeccCCCC
Q psy1169          96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG----------SRDVRYDEAKKFAEENDL-IFVEASAMTGE  163 (218)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~  163 (218)
                      |+++.++|+.+. .|+..+.... +..|+++|+||.|+..          .+.+..+++..++...+. .|+++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999996 5888777654 4699999999999854          234555778888888775 79999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy1169         164 NVEQAFLETAKKIYQN  179 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~~  179 (218)
                      |++++|+++.+.+.-.
T Consensus       160 ~v~~~f~~l~~~~~~~  175 (187)
T cd04129         160 GVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999877553

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2.6e-28  Score=177.73  Aligned_cols=159  Identities=19%  Similarity=0.313  Sum_probs=123.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|.+|||||||++++..+.+. .+.++.+.++.  .+  +...+.+.+||++|++.+..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34589999999999999999999877765 45667665543  22  234578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-----CCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-----DLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~  166 (218)
                      +|||+++.++++.+..++..+... ...+.|++|++||.|+....  ..++........     .+.++++||++|.|++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999999888777665432 22478999999999986543  334433333222     2246689999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         167 QAFLETAKKIYQ  178 (218)
Q Consensus       167 ~~~~~i~~~~~~  178 (218)
                      ++|++|.+.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887754

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=2e-28  Score=176.64  Aligned_cols=156  Identities=20%  Similarity=0.392  Sum_probs=125.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+++|.+|||||||+++|.+..+.. +.+|.+.++.  .+.+  ..+.+.+||++|+..+...+..+++.+|+++||+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886653 5666665553  2222  45789999999999998899999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC------CcEEEeccCCCCCHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND------LIFVEASAMTGENVEQAF  169 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~  169 (218)
                      +++++++..+..|+..+.... ..+.|+++++||.|+.+.  +..+++.+++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999999888776532 245899999999999533  45566666654322      357899999999999999


Q ss_pred             HHHHHHHHHh
Q psy1169         170 LETAKKIYQN  179 (218)
Q Consensus       170 ~~i~~~~~~~  179 (218)
                      ++|.+.+.+.
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9998877653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=2.7e-28  Score=178.10  Aligned_cols=164  Identities=21%  Similarity=0.352  Sum_probs=129.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      .+||+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998877644 566565554544443 3467899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh------CCCcEEEeccCCCCCHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------NDLIFVEASAMTGENVE  166 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~i~  166 (218)
                      |+|+++..+++.+..|+..+.... ..+.|+++++||+|+...  ...++...+...      ...+++++||+++.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            999999999998888887665432 347999999999998543  333444444321      13468899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy1169         167 QAFLETAKKIYQNIK  181 (218)
Q Consensus       167 ~~~~~i~~~~~~~~~  181 (218)
                      ++|++|.+.+.+..+
T Consensus       160 ~l~~~l~~~l~~~~~  174 (183)
T cd04152         160 EGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999876544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=6.4e-29  Score=177.45  Aligned_cols=152  Identities=20%  Similarity=0.377  Sum_probs=118.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|.+|||||||++++..+.+. .+.++.+.+..  .+..  ..+.+.+||++|++++..++..+++++|++||||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877775 45666665542  2222  4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHH-HHHHHH----hCCCcEEEeccCCCCCHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDE-AKKFAE----ENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~----~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      |+++..+++.+..|+..+... .....|+++++||.|+.+..  ...+ ...+..    ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999998877766432 22468999999999995432  2222 222221    224457899999999999999


Q ss_pred             HHHHH
Q psy1169         170 LETAK  174 (218)
Q Consensus       170 ~~i~~  174 (218)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=1.1e-28  Score=178.92  Aligned_cols=157  Identities=20%  Similarity=0.359  Sum_probs=122.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|+|||||++++..+.+. .+.++.+.++..  +..  ..+.+.+||++|++.+..++..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            34699999999999999999999877664 455676665532  222  4578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~  166 (218)
                      +|||++++.+++....|+..+.... ..+.|++||+||.|+.+..  ..++......     ...+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999988887765432 2468999999999996442  2233322221     123347789999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         167 QAFLETAKKI  176 (218)
Q Consensus       167 ~~~~~i~~~~  176 (218)
                      ++|++|.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999997764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=5.3e-28  Score=174.62  Aligned_cols=157  Identities=30%  Similarity=0.609  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999988766666665444 444566788899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHhhhcCCCCeEEEEeeCCCCCCCcc-----------ccHHHHHHHHHhCCC-cEEEeccCCC
Q psy1169          96 DITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLEGSRD-----------VRYDEAKKFAEENDL-IFVEASAMTG  162 (218)
Q Consensus        96 d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~S~~~~  162 (218)
                      |++++++|..... |+..+.... .+.|+++|+||+|+...+.           +..+++..++...+. +++++|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999887654 666555544 4899999999999876542           345677778877777 8999999999


Q ss_pred             CCHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAK  174 (218)
Q Consensus       163 ~~i~~~~~~i~~  174 (218)
                      .|++++|+++++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.6e-27  Score=178.30  Aligned_cols=167  Identities=30%  Similarity=0.531  Sum_probs=144.3

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      +.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            34456699999999999999999999988888888899988888777777888999999999999999888899999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++|+|||+++..+|..+..|+..+.... .+.|+++++||.|+... ... .....++...++.++++|++++.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVK-ARQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998887654 57899999999998543 233 23345667778899999999999999999


Q ss_pred             HHHHHHHHHh
Q psy1169         170 LETAKKIYQN  179 (218)
Q Consensus       170 ~~i~~~~~~~  179 (218)
                      .+|.+.+...
T Consensus       161 ~~ia~~l~~~  170 (215)
T PTZ00132        161 LWLARRLTND  170 (215)
T ss_pred             HHHHHHHhhc
Confidence            9999988764

>KOG4252|consensus

Probab=99.96  E-value=2.1e-30  Score=179.03  Aligned_cols=184  Identities=29%  Similarity=0.486  Sum_probs=167.6

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      +.+++..||++|+|..++||||+|++++.+-|...+..+++.++..+.+.+.+..+.+.+||++|+++|+.+...|++++
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            44688999999999999999999999999999999999999999888888888888888999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      .+.++||+.+|..||+....|++.+.... ..+|.++|-||+|+.++..+...+++.++......++.+|+++..|+..+
T Consensus        94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v  172 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV  172 (246)
T ss_pred             cceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence            99999999999999999999999988766 57999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCcccccccccc
Q psy1169         169 FLETAKKIYQNIKDGKLNANMTESG  193 (218)
Q Consensus       169 ~~~i~~~~~~~~~~~~~~~~~~~~~  193 (218)
                      |..|++.+.+..+++...+....++
T Consensus       173 F~YLaeK~~q~~kq~~~~~~~~q~s  197 (246)
T KOG4252|consen  173 FAYLAEKLTQQKKQSLNANERKQSS  197 (246)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhccc
Confidence            9999999999877654444443333

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=5.2e-28  Score=178.00  Aligned_cols=148  Identities=21%  Similarity=0.432  Sum_probs=126.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-----CeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-----GEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      +||+++|++|+|||||+++|..+.+...+.+|.+.++..+.+.++     +..+.+.|||++|++.+..+...+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888898888777776663     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhc-------------------CCCCeEEEEeeCCCCCCCccccHH----HHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLT-------------------NPNTVIFLIGNKMDLEGSRDVRYD----EAKKFA  147 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~piivv~nK~Dl~~~~~~~~~----~~~~~~  147 (218)
                      +|+|||++++.||+.+..|+..+....                   ..++|+++|+||.|+.+.+.+...    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999886531                   247999999999999766544433    345567


Q ss_pred             HhCCCcEEEeccCCCC
Q psy1169         148 EENDLIFVEASAMTGE  163 (218)
Q Consensus       148 ~~~~~~~~~~S~~~~~  163 (218)
                      .+.+++.++.++.+..
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            7889998888888553

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=1.3e-27  Score=174.18  Aligned_cols=160  Identities=19%  Similarity=0.322  Sum_probs=122.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..+||+++|++|||||||++++..+.+.. +.++.+.++.  .+.  ...+.+.+||++|++.+..++..+++.+|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998777654 5566665543  222  24578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|+++.+++..+..++..+... .....|++|++||.|+.+..  ..+++.....     ...+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999888777665432 12468999999999985432  2223222221     122356799999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++|++|.+.+.+.
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877653

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=1.4e-27  Score=171.71  Aligned_cols=160  Identities=30%  Similarity=0.399  Sum_probs=124.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+++|.+|||||||+++|..+.+...+..+ .... .....+.+..+.+.+||++|.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999998887654433 2222 333445667789999999999887777777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHHHHHHHHhC-C-CcEEEeccCCCCCHHHHHH
Q psy1169          96 DITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDEAKKFAEEN-D-LIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        96 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~S~~~~~~i~~~~~  170 (218)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+...  .+....+.... + .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 5777666544 579999999999997654421  22233333332 2 3799999999999999999


Q ss_pred             HHHHHHHH
Q psy1169         171 ETAKKIYQ  178 (218)
Q Consensus       171 ~i~~~~~~  178 (218)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=1.1e-27  Score=173.51  Aligned_cols=155  Identities=23%  Similarity=0.360  Sum_probs=122.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|+|||||+++|.+..+ ..+.++.+..  ...+.++  .+.+.+||++|++.+..++..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            4568999999999999999999987744 3445555533  3334443  478899999999998888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|+++..+++....|+..+... ...+.|+++|+||+|+.+..  ..+++..+..     ...++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            999999999999888887766542 23579999999999996543  3345555543     245679999999999999


Q ss_pred             HHHHHHHH
Q psy1169         167 QAFLETAK  174 (218)
Q Consensus       167 ~~~~~i~~  174 (218)
                      ++|+++++
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0393|consensus

Probab=99.96  E-value=9.3e-29  Score=176.98  Aligned_cols=165  Identities=28%  Similarity=0.553  Sum_probs=146.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ...+|++|||+.++|||+|+..+..+.|+..+.||...++ ...+.+ ++..+.+.+|||+|+++|+.++...+..+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3569999999999999999999999999999999988555 555668 49999999999999999999888899999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEe
Q psy1169          92 LMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEA  157 (218)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  157 (218)
                      |+||++.++.||+++ .+|+.++..+. +++|+++||+|.||..+            ..+..++...++++.+ +.|+|+
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999986 55999888877 89999999999999743            3567788899999977 569999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHh
Q psy1169         158 SAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      ||++..|+.++|+..+..++..
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~  181 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRP  181 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcc
Confidence            9999999999999999988774

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=6.2e-27  Score=169.28  Aligned_cols=174  Identities=32%  Similarity=0.541  Sum_probs=141.7

Q ss_pred             CCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhc
Q psy1169          38 QKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT  117 (218)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  117 (218)
                      +.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45677888999999988888889999999999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcCcccccccccccccc
Q psy1169         118 NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHK  197 (218)
Q Consensus       118 ~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  197 (218)
                      ..++|+++|+||+|+...+.+..+++..++...+..++++||++|.|++++|++|++.+.+....      ..+....++
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~------~~~~~~~~~  156 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS------NSNDANVVD  156 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc------CCCCCCccc
Confidence            56799999999999977667777888888888888999999999999999999999888653211      111111222


Q ss_pred             cCCCCCcCCCCCCCCCCCCCC
Q psy1169         198 ERGGPASLGDSSSSDKPNCSC  218 (218)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~c~~  218 (218)
                       ++...++..+.+.--..|-|
T Consensus       157 -~~~~~~~~~~~~~~~~~~~~  176 (176)
T PTZ00099        157 -IQLTNNSNANDKNMLSKCMC  176 (176)
T ss_pred             -eeccccCCccchhhHhhhcC
Confidence             44455555666666666666

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.5e-27  Score=170.78  Aligned_cols=152  Identities=18%  Similarity=0.305  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +|+++|++|||||||+++|.+..+ ...+.++.+....  .+  ....+.+.+||+||.+.+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 4455666654432  22  234678899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~  167 (218)
                      |+++..++.....|+..+....   ..+.|+++|+||+|+.....  .++......     ...+.++++||+++.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888877665432   25799999999999865322  222222221     1234589999999999999


Q ss_pred             HHHHHHH
Q psy1169         168 AFLETAK  174 (218)
Q Consensus       168 ~~~~i~~  174 (218)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=1e-26  Score=168.43  Aligned_cols=154  Identities=25%  Similarity=0.379  Sum_probs=119.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+++|++|+|||||++++..+.+.. ..++.+.++.  .+.+  ..+.+.+||++|.+.+...+..+++.+|++|+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999877664 4556555542  2223  35789999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHH-HHHH----HhCCCcEEEeccCCCCCHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEA-KKFA----EENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~S~~~~~~i~~  167 (218)
                      |+|+++.+++.....++..+.... ..+.|+++++||+|+...  ...++. ..+.    ...+++++++||+++.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            999999999988877776664432 246899999999998653  222332 2222    23456789999999999999


Q ss_pred             HHHHHHH
Q psy1169         168 AFLETAK  174 (218)
Q Consensus       168 ~~~~i~~  174 (218)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=4.1e-27  Score=169.41  Aligned_cols=153  Identities=20%  Similarity=0.272  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      .|+++|++|||||||+++|.+. +...+.++.+...  ..+..  ..+.+.+||++|+..+..++..+++.+|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999876 5566667766542  33333  45788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccH-HH---HHHHHHhC--CCcEEEeccCCC------C
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRY-DE---AKKFAEEN--DLIFVEASAMTG------E  163 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~-~~---~~~~~~~~--~~~~~~~S~~~~------~  163 (218)
                      +++..+++.+..|+..+..... .+.|+++|+||.|+.+.+.... .+   ...++...  .+.++++||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999888765432 4789999999999976542211 11   12223222  345778999998      8


Q ss_pred             CHHHHHHHHHH
Q psy1169         164 NVEQAFLETAK  174 (218)
Q Consensus       164 ~i~~~~~~i~~  174 (218)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.8e-26  Score=177.75  Aligned_cols=143  Identities=26%  Similarity=0.495  Sum_probs=123.2

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-------------eEEEEEEeeCcchhh
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-------------EKIKLQIWDTAGQER   76 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~   76 (218)
                      .+....+||+|+|+.|||||||+++|..+.+...+.++++.++....+.+++             ..+.+.|||++|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            4566779999999999999999999999999888889999888777666642             468899999999999


Q ss_pred             hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC------------CCCeEEEEeeCCCCCCCc---c---c
Q psy1169          77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN------------PNTVIFLIGNKMDLEGSR---D---V  138 (218)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piivv~nK~Dl~~~~---~---~  138 (218)
                      |..++..++++++++|+|||+++..+|+.+..|++.+.....            .++|++||+||+||...+   .   +
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            999999999999999999999999999999999999886531            258999999999996543   2   2


Q ss_pred             cHHHHHHHHHhCCC
Q psy1169         139 RYDEAKKFAEENDL  152 (218)
Q Consensus       139 ~~~~~~~~~~~~~~  152 (218)
                      ..+++++++...++
T Consensus       176 ~~e~a~~~A~~~g~  189 (334)
T PLN00023        176 LVDAARQWVEKQGL  189 (334)
T ss_pred             cHHHHHHHHHHcCC
Confidence            56889999988764

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=2e-26  Score=169.32  Aligned_cols=156  Identities=19%  Similarity=0.296  Sum_probs=123.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|||||||++++.+..+. .+.++.+...  ..+.++  .+.+.+||+||+..+...+..+++.+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45789999999999999999999987764 4445544432  334444  367889999999988888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh----------------CCCcEE
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE----------------NDLIFV  155 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~  155 (218)
                      +|+|+++.++++....|+..+.... ..+.|+++++||+|+..  .+..++.++++..                ..+.++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            9999999999988888877766533 25699999999999854  3455666666543                224589


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q psy1169         156 EASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       156 ~~S~~~~~~i~~~~~~i~~~  175 (218)
                      ++||+++.|++++|++|.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=2e-26  Score=164.70  Aligned_cols=152  Identities=24%  Similarity=0.429  Sum_probs=117.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      +|+++|++|+|||||+++|.+..+... .++.+...  ..+.. ...+.+.+||++|++.+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999998877543 45555443  23333 245789999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHH------HHhCCCcEEEeccCCCCCHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKF------AEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      +++..++..+..|+..+.... ..+.|+++|+||+|+....  ...++...      ....+++++++||+++.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999999988888877765432 2579999999999985432  22222222      12234568999999999999999


Q ss_pred             HHHHH
Q psy1169         170 LETAK  174 (218)
Q Consensus       170 ~~i~~  174 (218)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            98864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=1.6e-26  Score=164.91  Aligned_cols=151  Identities=23%  Similarity=0.358  Sum_probs=113.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+++|++++|||||++++....+.. ..++.+.+..  .+.  ...+.+.+||+||++.+..++..+++.+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776643 3455554432  222  245789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhh-hcCCCCeEEEEeeCCCCCCCccccHHHHH-HHHH----hCCCcEEEeccCCCCCHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDLEGSRDVRYDEAK-KFAE----ENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      ++++.++.....++..+.. ....+.|+++++||+|+.+..  ...+.. .+..    ..+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9999888776666554432 222479999999999986433  112222 2211    1234699999999999999999


Q ss_pred             HHHH
Q psy1169         171 ETAK  174 (218)
Q Consensus       171 ~i~~  174 (218)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=5.5e-26  Score=163.50  Aligned_cols=152  Identities=25%  Similarity=0.404  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKF------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      +|+|+|++|+|||||+++|.....      ...+.++.+....  .+.++  ...+.+||+||++.+..++..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999975322      2233444444432  33333  5788999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-------CCCcEEEeccCCC
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-------NDLIFVEASAMTG  162 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~  162 (218)
                      +++|+|+++.+++.....|+..+.... ..+.|+++++||+|+...  ....+...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999999988888877665432 257999999999998653  333444444332       3457999999999


Q ss_pred             CCHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAK  174 (218)
Q Consensus       163 ~~i~~~~~~i~~  174 (218)
                      .|+++++++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=4.2e-26  Score=162.70  Aligned_cols=151  Identities=22%  Similarity=0.368  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+++|.+|+|||||++++.+... ....++.+....  .+.+  ..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 344455554432  2333  35789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      ++++.++.....|+..+.... ..+.|+++++||+|+....  ..++......     ...++++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888877665533 3579999999999986543  2233333322     2456799999999999999999


Q ss_pred             HHHH
Q psy1169         171 ETAK  174 (218)
Q Consensus       171 ~i~~  174 (218)
                      +|+.
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            8874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=5e-26  Score=164.77  Aligned_cols=158  Identities=27%  Similarity=0.397  Sum_probs=123.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ++..+||+++|+.||||||+++++....... ..||.+.+.  ..+.+  ..+.+.+||.+|+..++..|..|+..+|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeee--CcEEEEEEeccccccccccceeecccccee
Confidence            3788999999999999999999998765432 444544443  33333  446789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh------CCCcEEEeccCCCCC
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------NDLIFVEASAMTGEN  164 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~  164 (218)
                      |||+|.++.+.+.+....+..+... ...+.|++|++||.|+.+.  ...+++......      ..+.++.+|+.+|.|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999999888887777666543 2257999999999998654  334555544432      344588999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKI  176 (218)
Q Consensus       165 i~~~~~~i~~~~  176 (218)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073|consensus

Probab=99.94  E-value=2.8e-25  Score=151.47  Aligned_cols=163  Identities=20%  Similarity=0.333  Sum_probs=130.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      .++.++|.++|..|+||||++++|++.. .....|+.+++..+.++    ..+++++||.+|+..+++.|.+|+..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4569999999999999999999998766 44556677766555444    678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCc---cccH-HHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSR---DVRY-DEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~---~~~~-~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      |+|+|.+++..+++....+..+... .-.+.|+++++||.|+...-   .+.. -....++....++++.||+.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            9999999998888876665554432 22478999999999996321   1111 12344456678899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      +.++|+.+.+.++
T Consensus       168 ~gidWL~~~l~~r  180 (185)
T KOG0073|consen  168 EGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=1.7e-25  Score=163.40  Aligned_cols=156  Identities=17%  Similarity=0.215  Sum_probs=119.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..++|+++|.+|||||||++++.+..+.. +.++.+...  ..+.+  ..+.+.+||++|+..+...+..++..+|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            556999999999999999999999876542 334443322  22233  3478899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh------------CCCcEEEecc
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------------NDLIFVEASA  159 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~S~  159 (218)
                      +|+|++++.++.....++..+... ...+.|+++++||.|+...  +..+++.+....            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999998888877765542 2257899999999998542  444555444321            2334899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy1169         160 MTGENVEQAFLETAKK  175 (218)
Q Consensus       160 ~~~~~i~~~~~~i~~~  175 (218)
                      +++.|+++++++|.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=8.7e-25  Score=155.51  Aligned_cols=152  Identities=24%  Similarity=0.381  Sum_probs=119.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      .|+++|++|||||||+++|.+..+...+.++.+.+...  +..+  .+.+.+||++|+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37999999999999999999998888888877766532  2232  3789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +++..++.....|+..+.... ..+.|+++++||.|+......  .+.....     ....++++++|++++.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999999888877776654322 247899999999998654322  2221111     12345789999999999999999


Q ss_pred             HHHH
Q psy1169         171 ETAK  174 (218)
Q Consensus       171 ~i~~  174 (218)
                      ++.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=4.4e-24  Score=151.59  Aligned_cols=157  Identities=33%  Similarity=0.500  Sum_probs=126.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+.+.++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999998887777777777777776677777668899999999999988888889999999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          95 YDITRR-STYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        95 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      +|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||.++.|+++++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999887 6666655 56666655554488999999999996544 33333444444556679999999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=2.1e-24  Score=157.00  Aligned_cols=154  Identities=22%  Similarity=0.295  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------ceeeeEEEEEE--EE---CCeEEEEEEeeCcchhhhh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPH------TIGVEFGTRII--EV---HGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~G~~~~~   78 (218)
                      +|+++|.+++|||||+++|+...       +...+.+      +.+.+......  .+   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998632       1111111      11222222222  22   5677889999999999999


Q ss_pred             hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC---cEE
Q psy1169          79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL---IFV  155 (218)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  155 (218)
                      ..+..+++.+|++|+|+|+++..+++.+..|....    ..++|+++|+||+|+...+  ......++....++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999987777766664322    2468999999999985432  12223445555554   389


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q psy1169         156 EASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       156 ~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ++||++|.|++++|+++.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=1.9e-24  Score=160.51  Aligned_cols=156  Identities=22%  Similarity=0.194  Sum_probs=113.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh---------hhhhhHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVTRS   83 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~   83 (218)
                      +..++|+|+|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+|||||...         +.... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            45689999999999999999999987654333233333333444444432 3788999999732         22222 2


Q ss_pred             hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169          84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE  163 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (218)
                      .+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.......     ........+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            36789999999999999888887777776665554578999999999986543221     3444566789999999999


Q ss_pred             CHHHHHHHHHHH
Q psy1169         164 NVEQAFLETAKK  175 (218)
Q Consensus       164 ~i~~~~~~i~~~  175 (218)
                      |+++++++|.+.
T Consensus       192 gi~~l~~~L~~~  203 (204)
T cd01878         192 GLDELLEAIEEL  203 (204)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG3883|consensus

Probab=99.93  E-value=3e-24  Score=144.87  Aligned_cols=176  Identities=20%  Similarity=0.324  Sum_probs=145.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-hhhhHhhhccCC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-RAVTRSYYRGAA   89 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d   89 (218)
                      ....||+|+|..++|||++++.++.+....  +..+|+...|....-+.++..-++.|+||.|.... ..+.++|+.-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            456799999999999999999998665443  34455554443333334566679999999997766 668899999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ++++||+..+++||+.+.-+-..|....+ ..+||++++||.|+.+++.+..+.+..|++...+.++++++.+...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999998777667776543 48999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCccccc
Q psy1169         169 FLETAKKIYQNIKDGKLNAN  188 (218)
Q Consensus       169 ~~~i~~~~~~~~~~~~~~~~  188 (218)
                      |..+.+.+.+..+.+.++..
T Consensus       167 f~~l~~rl~~pqskS~Fpl~  186 (198)
T KOG3883|consen  167 FTYLASRLHQPQSKSTFPLS  186 (198)
T ss_pred             HHHHHHhccCCcccccCcch
Confidence            99999998876665555443

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=157.85  Aligned_cols=169  Identities=38%  Similarity=0.585  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|+.|||||||+++|.+..+...+.++.+..+...........+.+.+|||+|+++++.++..|+.++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            39999999999999999999999999999999988887777776665688999999999999999999999999999999


Q ss_pred             EECCC-hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHh---CCCcEEEec
Q psy1169          95 YDITR-RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEE---NDLIFVEAS  158 (218)
Q Consensus        95 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~---~~~~~~~~S  158 (218)
                      +|..+ ..+++....|...+........|+++++||+|+....            .............   ....++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 5666777888888887765679999999999997653            2222222222222   233389999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHhhhcC
Q psy1169         159 AM--TGENVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       159 ~~--~~~~i~~~~~~i~~~~~~~~~~~  183 (218)
                      ++  .+.++.++|..++..+.+.....
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            99  99999999999999997654433

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=2.6e-24  Score=154.90  Aligned_cols=155  Identities=21%  Similarity=0.199  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh---------hhhHhhhcc
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVTRSYYRG   87 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~   87 (218)
                      +|+++|.+|+|||||+++|.+..+.....+..+.......+  ....+.+.||||||.....         .........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            79999999999999999999877643322222222222222  2245789999999974210         111111234


Q ss_pred             CCEEEEEEECCChhhH--HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169          88 AAGALMVYDITRRSTY--NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV  165 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (218)
                      +|++|+|+|+++..++  +....|+..+.... .+.|+++|+||+|+.....+.  ...++....+.+++++||+++.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence            6899999999987653  55566777665443 479999999999996654433  244555556788999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         166 EQAFLETAKKI  176 (218)
Q Consensus       166 ~~~~~~i~~~~  176 (218)
                      +++|+++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=1.9e-24  Score=155.96  Aligned_cols=157  Identities=16%  Similarity=0.138  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----hhhhhHhh---hccCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSY---YRGAA   89 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   89 (218)
                      +|+++|.+|||||||+++|.+........+..+.+.....+.+.+ ...+.+|||||...    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999986543221111112222222233332 24789999999632    11222333   44699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCH
Q psy1169          90 GALMVYDITRR-STYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENV  165 (218)
Q Consensus        90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i  165 (218)
                      ++++|+|+++. .+++.+..|.+.+.....  .+.|+++|+||+|+....... .....+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 789999888887766532  368999999999996654432 334444444 4778999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         166 EQAFLETAKK  175 (218)
Q Consensus       166 ~~~~~~i~~~  175 (218)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=8.2e-24  Score=166.56  Aligned_cols=164  Identities=15%  Similarity=0.081  Sum_probs=119.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------hhhhhHhhhcc
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------FRAVTRSYYRG   87 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   87 (218)
                      ...|.|+|.++||||||+++|..........+.++.......+.+. ....+.+||+||..+       +...+...++.
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            4579999999999999999998754332222333444434444442 234688999999642       22223334567


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV  165 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (218)
                      ++++|+|+|+++.++++.+..|...+..+..  .+.|+++|+||+|+.............+....+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999998889999999888876543  36899999999999765544434455555556688999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy1169         166 EQAFLETAKKIYQN  179 (218)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (218)
                      ++++++|.+.+.+.
T Consensus       317 ~eL~~~L~~~l~~~  330 (335)
T PRK12299        317 DELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887653

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=6.5e-24  Score=153.58  Aligned_cols=155  Identities=21%  Similarity=0.314  Sum_probs=114.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...++|+++|++|+|||||++++.+..+. ...++.+.+.  ..+...  ...+.+||++|...+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            34799999999999999999999887653 2344444332  233333  367889999999988888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-----CCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-----DLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~  166 (218)
                      +|+|+++..++.....++..+... ...++|+++++||.|+.....  .++..+.....     ..+++++||+++.|++
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            999999998888877776655432 234799999999999864332  12222222111     1236899999999999


Q ss_pred             HHHHHHHH
Q psy1169         167 QAFLETAK  174 (218)
Q Consensus       167 ~~~~~i~~  174 (218)
                      ++|++|.+
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=1.6e-23  Score=150.07  Aligned_cols=152  Identities=20%  Similarity=0.209  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +.|+++|.+|||||||+++|.+.   .+.....+..+.+.....+.+.. ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            35899999999999999999863   23333333334443334444432 457899999999988776777888999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHh---CCCcEEEeccCCCCC
Q psy1169          93 MVYDITR---RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEE---NDLIFVEASAMTGEN  164 (218)
Q Consensus        93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~  164 (218)
                      +|+|+++   .++.+.+.    .+...  ...|+++++||+|+.....  ...++..++...   .+.+++++|++++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   33333222    12211  1248999999999965421  112334444443   467899999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         165 VEQAFLETAK  174 (218)
Q Consensus       165 i~~~~~~i~~  174 (218)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=6.5e-24  Score=148.77  Aligned_cols=134  Identities=20%  Similarity=0.223  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh-----hhhhhhHhhhccCCEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-----RFRAVTRSYYRGAAGA   91 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   91 (218)
                      ||+++|++|+|||||+++|.+..+.  +.++.+.+       +.     -.+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999877642  22332222       21     1589999973     2333333 57899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQAFL  170 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~  170 (218)
                      |+|||++++.++.. ..|....      ..|+++++||+|+.+ +....+++.++++..+. +++++||+++.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999998755 2443321      248999999999864 23445666777777665 799999999999999998


Q ss_pred             HHH
Q psy1169         171 ETA  173 (218)
Q Consensus       171 ~i~  173 (218)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=7.6e-23  Score=144.02  Aligned_cols=153  Identities=47%  Similarity=0.786  Sum_probs=121.9

Q ss_pred             EEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC
Q psy1169          20 IIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT   98 (218)
Q Consensus        20 v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   98 (218)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||++|...+......+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998777 44444554 6666666666677889999999999888887788999999999999999


Q ss_pred             ChhhHHHHHHHH-HHHhhhcCCCCeEEEEeeCCCCCCCccccHHH-HHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          99 RRSTYNHLSSWL-TDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE-AKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        99 ~~~s~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ++.++..+..|+ .........+.|+++++||.|+.......... ..........+++++|+.++.|+++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999998888772 22333444689999999999986554433222 4445556788899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=2.7e-23  Score=153.14  Aligned_cols=162  Identities=19%  Similarity=0.184  Sum_probs=112.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE--QKFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT   81 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   81 (218)
                      -+|+++|.+++|||||+++|+.  +.+...+            ..+.+.+.......+....+.+.+|||||++.|....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999987  4444332            1223334434444455566789999999999999999


Q ss_pred             HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc-ccHHHHHHHHH-------hCCCc
Q psy1169          82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD-VRYDEAKKFAE-------ENDLI  153 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~  153 (218)
                      ..+++.+|++++|+|+++.. +.....++..+..   .++|+++++||+|+...+. ...+++.++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2223333433332   4689999999999965432 12234444442       23678


Q ss_pred             EEEeccCCCCCHHHH------HHHHHHHHHHhhh
Q psy1169         154 FVEASAMTGENVEQA------FLETAKKIYQNIK  181 (218)
Q Consensus       154 ~~~~S~~~~~~i~~~------~~~i~~~~~~~~~  181 (218)
                      ++++||++|.|+.+.      ++++++.+.++++
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~  192 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP  192 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence            999999999877433      5666666666544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0070|consensus

Probab=99.91  E-value=3e-23  Score=145.15  Aligned_cols=162  Identities=19%  Similarity=0.309  Sum_probs=130.8

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .......+|+++|--+|||||++.+|..++.... .||.+.......+    .++.|.+||.+|++.++.+|..|+++.+
T Consensus        12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~   86 (181)
T KOG0070|consen   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQ   86 (181)
T ss_pred             ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCc
Confidence            3456789999999999999999999987776655 6777776544444    4789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CCCcEEEeccCCCC
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----NDLIFVEASAMTGE  163 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~  163 (218)
                      ++|||+|.+|++-+..+...+..+..... .+.|+++++||.|++..-  +..++.+....     ....+..++|.+|+
T Consensus        87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~  164 (181)
T KOG0070|consen   87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGE  164 (181)
T ss_pred             EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence            99999999999999888887776666554 589999999999996553  33444443332     33446789999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy1169         164 NVEQAFLETAKKIYQ  178 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~  178 (218)
                      |+.+.++++.+.+..
T Consensus       165 GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  165 GLYEGLDWLSNNLKK  179 (181)
T ss_pred             cHHHHHHHHHHHHhc
Confidence            999999999988754

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=1.4e-22  Score=145.81  Aligned_cols=157  Identities=18%  Similarity=0.180  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      .|+|+|.+|+|||||+++|....+.....+..+.+.....+... .....+.+|||||++.+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887766544444444333333332 13568899999999998888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH-HHHHHHHH------hCCCcEEEeccCCCCCHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY-DEAKKFAE------ENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~------~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |+++....+... .+..+..   .+.|+++|+||+|+........ .....+..      ....+++++|++++.|++++
T Consensus        82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            999854322222 1222222   4689999999999864321111 11211111      12357999999999999999


Q ss_pred             HHHHHHHHH
Q psy1169         169 FLETAKKIY  177 (218)
Q Consensus       169 ~~~i~~~~~  177 (218)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=2.4e-23  Score=154.29  Aligned_cols=153  Identities=20%  Similarity=0.174  Sum_probs=102.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc-----------hhhhhhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG-----------QERFRAVT   81 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~   81 (218)
                      ...++|+++|.+|+|||||+++|.+..+.....+..+.  ....+.+.    .+.+|||||           .+.+...+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~--~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR--KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee--CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            45689999999999999999999987765544443332  23333322    588999999           45666665


Q ss_pred             Hhhhc----cCCEEEEEEECCChhhH-H---------HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH
Q psy1169          82 RSYYR----GAAGALMVYDITRRSTY-N---------HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA  147 (218)
Q Consensus        82 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~  147 (218)
                      ..++.    .++++++|+|.+....+ +         .-..++..+.   ..++|+++|+||+|+....   .+...++.
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence            55554    45788888887653221 0         0011122222   2479999999999986543   23344444


Q ss_pred             HhCCC---------cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         148 EENDL---------IFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       148 ~~~~~---------~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      ...++         +++++||++| |+++++++|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            44443         5899999999 999999999987644

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=2.3e-22  Score=158.29  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=115.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh----hhhhH---hhhc
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAVTR---SYYR   86 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~   86 (218)
                      ....|+|+|.++||||||+++|..........+.++.......+.+.+ ...+.|||+||..+.    ..+..   ..++
T Consensus       156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie  234 (329)
T TIGR02729       156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE  234 (329)
T ss_pred             ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence            346899999999999999999987653322222223333344444432 357889999997421    12223   3355


Q ss_pred             cCCEEEEEEECCCh---hhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169          87 GAAGALMVYDITRR---STYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT  161 (218)
Q Consensus        87 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (218)
                      .++++|+|+|+++.   .+++.+..|.+++..+..  .+.|+++|+||+|+..... ..+..+.+....+.+++++||++
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt  313 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT  313 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence            79999999999986   678888888877765532  3689999999999965533 23445556666678899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKI  176 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~  176 (218)
                      +.|++++++++.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999988754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=1.9e-22  Score=143.65  Aligned_cols=147  Identities=19%  Similarity=0.187  Sum_probs=108.4

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh------hhHhhhc--cCCEE
Q psy1169          20 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYYR--GAAGA   91 (218)
Q Consensus        20 v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~   91 (218)
                      |+|.+|+|||||++++.+..+.....+..+.+.....+.+++  ..+.+|||||...+..      +...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999988765444444445555455555554  4788999999876543      3455564  99999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|+|+.+.+...   .|+..+..   .+.|+++++||+|+.....+. .....+....+.+++++|+.++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999999865432   33333332   468999999999997654443 2345666667889999999999999999998


Q ss_pred             HHHH
Q psy1169         172 TAKK  175 (218)
Q Consensus       172 i~~~  175 (218)
                      +.+.
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            8775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=1.6e-22  Score=160.56  Aligned_cols=154  Identities=21%  Similarity=0.206  Sum_probs=111.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch---------hhhhhhhHhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ---------ERFRAVTRSY   84 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~   84 (218)
                      ..++|+++|.+|+|||||+|+|.+..+.....+..+.+.....+.+++. ..+.+|||+|.         +.|.... ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            4589999999999999999999987654333333344555666666432 47889999996         2233322 34


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      +..+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.....+     ..+. ....+++++||+++.|
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~G  339 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEG  339 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCC
Confidence            789999999999999988877766666555544457899999999999643221     1111 2234689999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         165 VEQAFLETAKK  175 (218)
Q Consensus       165 i~~~~~~i~~~  175 (218)
                      ++++++.|.+.
T Consensus       340 I~eL~~~I~~~  350 (351)
T TIGR03156       340 LDLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=9.3e-23  Score=138.63  Aligned_cols=115  Identities=33%  Similarity=0.585  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      ||+|+|++|+|||||+++|.+..+.  .......+.++.............+.+||++|.+.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988876  12223333444444555677777799999999998888777779999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCC
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMD  131 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~D  131 (218)
                      ||++++++++.+..++..+....  ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999999866544443332  25699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG1673|consensus

Probab=99.90  E-value=7.5e-23  Score=138.47  Aligned_cols=165  Identities=25%  Similarity=0.472  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      -.+||.++|++..|||||+-.+.++.+.+++..+.+..+-.+.+.+.+..+.+.|||.+|++++..+.+-..+.+-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            35999999999999999999999999988888899999999999999999999999999999999988888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc-----cccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR-----DVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      +||++.+.++..+.+|+++.+...+.-+| ++|++|.|+--.-     +.....++.+++.++++++.+|+..+.|+..+
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence            99999999999999999998887766666 5789999863221     11224578888999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |..++..++.-
T Consensus       178 FK~vlAklFnL  188 (205)
T KOG1673|consen  178 FKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHhCC
Confidence            99998888653

>KOG0075|consensus

Probab=99.90  E-value=5.5e-23  Score=137.81  Aligned_cols=158  Identities=20%  Similarity=0.355  Sum_probs=126.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+.+.++|..++|||||++.+..+.+.+...|+.++.    +..++.+.+.+.+||.+|+..|+++|..|++++++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn----mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccce----eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            35789999999999999999998888888888887754    44566788999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHH-HHHH----HHhCCCcEEEeccCCCCCHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDE-AKKF----AEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      |+|+.+++.+...+.-++.+..... .++|+++++||.|+.+.  ..... +.++    .....+..|.+|+++..|++.
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            9999999888777776666554332 48999999999998654  22221 1111    112344589999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         168 AFLETAKKIY  177 (218)
Q Consensus       168 ~~~~i~~~~~  177 (218)
                      +.+|+++...
T Consensus       173 ~~~Wli~hsk  182 (186)
T KOG0075|consen  173 TLDWLIEHSK  182 (186)
T ss_pred             HHHHHHHHhh
Confidence            9999998654

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=6.9e-22  Score=152.53  Aligned_cols=153  Identities=25%  Similarity=0.196  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh--------hhhhHhhhccC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--------RAVTRSYYRGA   88 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~~   88 (218)
                      +|+++|.+|||||||+|+|++..+........++......+... ...++.+|||||....        ......++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            68999999999999999999877543222111111112222222 2346899999996432        11234567899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQ  167 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~  167 (218)
                      |++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+..... .......+....+. +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999877664  333333332   4689999999999964322 22334444444444 789999999999999


Q ss_pred             HHHHHHHHH
Q psy1169         168 AFLETAKKI  176 (218)
Q Consensus       168 ~~~~i~~~~  176 (218)
                      +++++.+.+
T Consensus       155 L~~~l~~~l  163 (270)
T TIGR00436       155 LAAFIEVHL  163 (270)
T ss_pred             HHHHHHHhC
Confidence            998888765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.89  E-value=2.7e-22  Score=145.37  Aligned_cols=155  Identities=21%  Similarity=0.216  Sum_probs=107.0

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh----hhh---hHhhhccCCEEE
Q psy1169          20 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAV---TRSYYRGAAGAL   92 (218)
Q Consensus        20 v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~~i   92 (218)
                      ++|++|||||||+++|.+........+..+.+.....+.+. ....+.+||+||....    ..+   ...+++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            58999999999999999876422222222222223333333 1456789999996321    112   234577899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHhhhcC-------CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169          93 MVYDITRR------STYNHLSSWLTDTKNLTN-------PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus        93 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                      +|+|+.+.      .++..+..|...+.....       .+.|+++|+||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999998      577777777776654432       36899999999999765443322233444456777999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy1169         160 MTGENVEQAFLETAKK  175 (218)
Q Consensus       160 ~~~~~i~~~~~~i~~~  175 (218)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.89  E-value=1.4e-22  Score=141.76  Aligned_cols=148  Identities=21%  Similarity=0.230  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh------hhhhHhhh--cc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF------RAVTRSYY--RG   87 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~   87 (218)
                      |+|+++|.|++|||||+|+|.+........+..+.+.....+.+.+  ..+.++|+||....      +.....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999998875555556666676666776665  56778899994321      23344444  68


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      .|++|+|+|+++.+.-.   .+..++..   .+.|+++++||+|+...+... .+...+.+..++|++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999999854322   23333333   469999999999986655444 246677778899999999999999999


Q ss_pred             HHHHH
Q psy1169         168 AFLET  172 (218)
Q Consensus       168 ~~~~i  172 (218)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=5.2e-22  Score=164.13  Aligned_cols=181  Identities=22%  Similarity=0.202  Sum_probs=122.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcch----------hhhhhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFRAVT   81 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   81 (218)
                      ...++|+|+|.+|+|||||+++|++.... ....+.++.+.....+.+++..  +.+|||+|.          +.+..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHH
Confidence            35699999999999999999999987643 2333444455445555565544  569999994          3333332


Q ss_pred             -HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHH-HHHhCCCcEEEe
Q psy1169          82 -RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKK-FAEENDLIFVEA  157 (218)
Q Consensus        82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~  157 (218)
                       ..+++.+|++|+|+|+++..+++.+. ++..+..   .+.|+++|+||+|+......  ...+... +......+++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             34678999999999999998888774 3443332   57899999999999643211  1112221 222244689999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH---hhhcCcccccccccccccccC
Q psy1169         158 SAMTGENVEQAFLETAKKIYQ---NIKDGKLNANMTESGVQHKER  199 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~  199 (218)
                      ||++|.|++++|..+.+.+.+   +++...++....+....++++
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p  407 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPP  407 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Confidence            999999999999999877643   344555555555544444443

>KOG0071|consensus

Probab=99.89  E-value=1.6e-21  Score=129.79  Aligned_cols=156  Identities=21%  Similarity=0.374  Sum_probs=124.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..++|+++|..++||||++..|..+.. ....+|.++......    .+++.|.+||.+|++..+.+|++|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            378999999999999999999976553 334456665544333    377889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CCCcEEEeccCCCCCHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----NDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~  167 (218)
                      |+|..+....+++++-+..+..... ...|++|.+||.|++...  ..+++.++...     ..+.+.++++.+++++.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            9999999888888776666654432 478999999999997664  33566655543     345578999999999999


Q ss_pred             HHHHHHHHH
Q psy1169         168 AFLETAKKI  176 (218)
Q Consensus       168 ~~~~i~~~~  176 (218)
                      -|.|+.+.+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999998765

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=9.8e-22  Score=144.57  Aligned_cols=158  Identities=16%  Similarity=0.182  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC----CCCC---CCC--CceeeeEEEEEEE----------ECCeEEEEEEeeCcchhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ----KFMP---DCP--HTIGVEFGTRIIE----------VHGEKIKLQIWDTAGQER   76 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~----~~~~---~~~--~~~~~~~~~~~~~----------~~~~~~~~~i~D~~G~~~   76 (218)
                      ++|+++|+.++|||||+++|+..    .+..   +..  .+....+....+.          ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999863    1111   111  2222222222222          113367889999999876


Q ss_pred             hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHHHH------
Q psy1169          77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKFAE------  148 (218)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~------  148 (218)
                      +..........+|++++|+|+.+....+....+.  +...  .+.|+++++||+|+......  ..++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444566789999999999865544433322  1121  25799999999998643221  1222222211      


Q ss_pred             -hCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         149 -ENDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       149 -~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                       ..+++++++||+++.|++++++++.+++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             24678999999999999999999988763

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.88  E-value=2.4e-21  Score=137.66  Aligned_cols=146  Identities=22%  Similarity=0.209  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh--------hhHhhhc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSYYR   86 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   86 (218)
                      ++|+++|++|+|||||++++.+..... ...+..+.+.....+...  ...+.+|||||...+..        ....++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999998765421 222233333333344343  35678999999654321        2334677


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      .+|++++|+|+++..+......+..      ..+.|+++++||+|+......       .......+++++||+++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999999877766544332      357899999999998654433       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         167 QAFLETAKKI  176 (218)
Q Consensus       167 ~~~~~i~~~~  176 (218)
                      +++.+|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=2.2e-21  Score=142.04  Aligned_cols=154  Identities=21%  Similarity=0.205  Sum_probs=109.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc----------------eeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT----------------IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV   80 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (218)
                      +|+|+|.+|+|||||+++|++..........                .+.......  .......+.+||+||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVAT--FEWPDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEE--EeeCCEEEEEEeCCCcHHHHHH
Confidence            4899999999999999999887665433221                112221222  2223567889999999988888


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHHHHh---------
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKFAEE---------  149 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~---------  149 (218)
                      +..++..+|++++|+|+.+..+.+.. .++..+..   .+.|+++++||+|+......  ....+.+....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            88999999999999999987654433 33333332   57999999999999753222  12233333332         


Q ss_pred             -----CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         150 -----NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       150 -----~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                           ...+++++|++++.|++++++++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 356799999999999999999988775

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.88  E-value=3.5e-21  Score=157.01  Aligned_cols=153  Identities=23%  Similarity=0.237  Sum_probs=114.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh--------hhH
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTR   82 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~   82 (218)
                      +..++|+++|++|+|||||+|+|++...  ...+ +..+.+.....+.+++  +.+.+|||||...+..        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            4568999999999999999999998653  2333 3344555555566655  4568999999754332        124


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      .+++.+|++|+|||++++.+++..  |+..+.   ..+.|+++|+||+|+...      +...++...+.+++++|+++ 
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence            578899999999999998887765  655443   246899999999998543      12344556677899999998 


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q psy1169         163 ENVEQAFLETAKKIYQNI  180 (218)
Q Consensus       163 ~~i~~~~~~i~~~~~~~~  180 (218)
                      .|++++|+.+.+.+.+..
T Consensus       346 ~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       346 LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            699999999999887765

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15494 era GTPase Era; Provisional

Probab=99.88  E-value=2.3e-21  Score=153.63  Aligned_cols=157  Identities=23%  Similarity=0.309  Sum_probs=105.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhh-------hhH
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRA-------VTR   82 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~-------~~~   82 (218)
                      .+..++|+++|.+|||||||+++|++..+..... +..+.+.....+..++  .++.||||||... +..       ...
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            3566799999999999999999999877643111 1112222233344443  4679999999742 211       122


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEEEecc
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFVEASA  159 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S~  159 (218)
                      ..+..+|++|+|+|..+  ++.... .|+..+..   .+.|+++|+||+|+...   ...+..+++....  ..++++||
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence            34789999999999766  333443 34444432   34677889999998543   2345555555433  57999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy1169         160 MTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~  178 (218)
                      ++|.|++++|++|.+.+.+
T Consensus       199 ktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             cCccCHHHHHHHHHHhCCC
Confidence            9999999999998876643

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=5.3e-21  Score=141.08  Aligned_cols=160  Identities=19%  Similarity=0.200  Sum_probs=107.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch----------hhhhhh
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFRAV   80 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~   80 (218)
                      ..+..++|+++|.+|+|||||+++|++..+.....++.+.+........   ...+.||||||.          +.+..+
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            4567799999999999999999999987654444444443332222222   257899999993          344555


Q ss_pred             hHhhhccC---CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHHHHHHHHhCCCcEE
Q psy1169          81 TRSYYRGA---AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDEAKKFAEENDLIFV  155 (218)
Q Consensus        81 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~  155 (218)
                      ...+++.+   +++++++|...+.+.... .+...+.   ..+.|+++++||.|+....+..  .+.+.........+++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            55566544   577888998876443321 1122222   2468899999999986543221  1224344444467899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHH
Q psy1169         156 EASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       156 ~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      ++|++++.|++++++.|.+.+.
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhc
Confidence            9999999999999998877654

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=7.7e-21  Score=160.06  Aligned_cols=156  Identities=23%  Similarity=0.287  Sum_probs=114.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCC------CceeeeEEEEE--EEE---CCeEEEEEEeeCcchhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCP------HTIGVEFGTRI--IEV---HGEKIKLQIWDTAGQER   76 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~   76 (218)
                      .-+++++|+.++|||||+++|+...       +...+.      ...+.+.....  +.+   ++..+.+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998642       111111      11233333332  222   45678999999999999


Q ss_pred             hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC---c
Q psy1169          77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL---I  153 (218)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~  153 (218)
                      |...+..++..+|++|+|+|+++..+.+....|.....    .+.|+++++||+|+....  ......++....++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999999887777777654432    468999999999986432  11223344444444   3


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q psy1169         154 FVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       154 ~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ++++||++|.|++++|++|.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999998765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.87  E-value=5.8e-21  Score=135.97  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----hhhhhhHhhhccCCEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   92 (218)
                      +|+++|.+|+|||||+++|.+... . ...+       ..+.+...    .+||+||..    ++.......++.+|++|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999875431 1 1111       12222222    269999962    22222233478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC--cEEEeccCCCCCHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL--IFVEASAMTGENVEQAFL  170 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~i~~~~~  170 (218)
                      +|+|+++..++..  .|+..+    ..+.|+++++||.|+.+.   ..+...+++...+.  +++++||+++.|++++|+
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            9999998877532  343332    246789999999998542   33556666666664  899999999999999999


Q ss_pred             HHHHHHHHh
Q psy1169         171 ETAKKIYQN  179 (218)
Q Consensus       171 ~i~~~~~~~  179 (218)
                      .+.+.+.+.
T Consensus       141 ~l~~~~~~~  149 (158)
T PRK15467        141 YLASLTKQE  149 (158)
T ss_pred             HHHHhchhh
Confidence            998777554

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=3.8e-21  Score=157.57  Aligned_cols=149  Identities=25%  Similarity=0.245  Sum_probs=110.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh--------hHhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRSY   84 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   84 (218)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++  ..+.+|||+|...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            4589999999999999999999986642 22233334455455555554  46789999997654321        2346


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      ++.+|++++|+|++++.+++....|..      ..+.|+++|+||+|+.......        .....+++++|++++.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            889999999999999888776544432      3568999999999996543221        33456799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKIYQ  178 (218)
Q Consensus       165 i~~~~~~i~~~~~~  178 (218)
                      ++++++++.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=6.1e-21  Score=135.61  Aligned_cols=145  Identities=19%  Similarity=0.109  Sum_probs=98.5

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCC--CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh--------hhHhhhccC
Q psy1169          19 IIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSYYRGA   88 (218)
Q Consensus        19 ~v~G~~g~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~   88 (218)
                      +++|.+|+|||||+++|.+...  ..... ..+.+.........  ...+.+|||||...+..        .....++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~-~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTP-GVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCC-CceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            4799999999999999987642  22222 22222223333333  36788999999876433        334567889


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQ  167 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~  167 (218)
                      |++++|+|..+..+.... .+.+.+..   .+.|+++|+||+|+......     .......+. .++++|++++.|+++
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence            999999999876544332 12222222   35899999999999654322     222333444 689999999999999


Q ss_pred             HHHHHHHH
Q psy1169         168 AFLETAKK  175 (218)
Q Consensus       168 ~~~~i~~~  175 (218)
                      +++++.+.
T Consensus       149 l~~~l~~~  156 (157)
T cd01894         149 LLDAILEL  156 (157)
T ss_pred             HHHHHHhh
Confidence            99999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=7.8e-21  Score=138.26  Aligned_cols=153  Identities=18%  Similarity=0.222  Sum_probs=102.1

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch----------hh
Q psy1169           7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ER   76 (218)
Q Consensus         7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~   76 (218)
                      ..+.+....++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+..++   .+.+||+||.          ..
T Consensus        10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~   86 (179)
T TIGR03598        10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEK   86 (179)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHH
Confidence            3455678889999999999999999999998764443333433333333333332   6889999994          23


Q ss_pred             hhhhhHhhhcc---CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHhC-
Q psy1169          77 FRAVTRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEEN-  150 (218)
Q Consensus        77 ~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~-  150 (218)
                      +..+...+++.   ++++++|+|++++.+.... .++..+..   .+.|+++++||+|+.....  ...+++++.+... 
T Consensus        87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~  162 (179)
T TIGR03598        87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA  162 (179)
T ss_pred             HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence            44444556553   5799999999886554444 22333332   4689999999999864322  1234455555553 


Q ss_pred             -CCcEEEeccCCCCCHH
Q psy1169         151 -DLIFVEASAMTGENVE  166 (218)
Q Consensus       151 -~~~~~~~S~~~~~~i~  166 (218)
                       +..++++||+++.|++
T Consensus       163 ~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       163 DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCCceEEEECCCCCCCC
Confidence             3579999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK11058 GTPase HflX; Provisional

Probab=99.87  E-value=9.8e-21  Score=153.57  Aligned_cols=158  Identities=20%  Similarity=0.156  Sum_probs=110.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--hhhhh------Hhhhcc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVT------RSYYRG   87 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~------~~~~~~   87 (218)
                      ++|+++|.+|||||||+|+|.+........+..+.+.....+.+.+. ..+.+|||+|...  ...++      ...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            68999999999999999999986654333334444554555555442 2567999999732  12222      234688


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCCCCCHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVE  166 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~  166 (218)
                      +|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+......   ... . ...+.+ ++++||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~~-~-~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RID-R-DEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HHH-H-HhcCCCceEEEeCCCCCCHH
Confidence            999999999999988877765555444444457899999999998643211   111 1 123444 5889999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++++++.+.+...
T Consensus       352 eL~e~I~~~l~~~  364 (426)
T PRK11058        352 LLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999888554

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=2.9e-20  Score=150.04  Aligned_cols=159  Identities=17%  Similarity=0.176  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----hhhhhHhh---hccC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSY---YRGA   88 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~   88 (218)
                      ..|+|+|.++||||||+++|..........+.++.......+.+. ....+.+||+||...    ...+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            489999999999999999998765332222333333333333332 135788999999642    11233333   4569


Q ss_pred             CEEEEEEECCCh---hhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169          89 AGALMVYDITRR---STYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE  163 (218)
Q Consensus        89 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (218)
                      +++|+|+|+++.   ..++.+..|...+..+..  .+.|++||+||+|+...    .+....+....+.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999865   667777777777766542  37899999999998432    234455555556789999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy1169         164 NVEQAFLETAKKIYQN  179 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~~  179 (218)
                      |++++++++.+.+.+.
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998877554

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=1.8e-20  Score=157.22  Aligned_cols=155  Identities=21%  Similarity=0.225  Sum_probs=113.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ..+..+|+++|+.++|||||+++|.+..+.....+..+.+.....+.+++. ..+.||||||++.|..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            356689999999999999999999988776655554555544444444332 2788999999999999998899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC---------CCcEEEeccCCC
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN---------DLIFVEASAMTG  162 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~  162 (218)
                      |+|+|+++....+....+    ......++|+++++||+|+....   .+.+...+...         ..+++++||++|
T Consensus       163 ILVVda~dgv~~qT~e~i----~~~~~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG  235 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEAI----SHAKAANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPVSALTG  235 (587)
T ss_pred             EEEEECCCCCCHhHHHHH----HHHHHcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence            999999875433333222    22222578999999999985432   23333333221         246999999999


Q ss_pred             CCHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAK  174 (218)
Q Consensus       163 ~~i~~~~~~i~~  174 (218)
                      .|++++|+++..
T Consensus       236 eGI~eLl~~I~~  247 (587)
T TIGR00487       236 DGIDELLDMILL  247 (587)
T ss_pred             CChHHHHHhhhh
Confidence            999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=2.4e-20  Score=152.38  Aligned_cols=164  Identities=13%  Similarity=0.093  Sum_probs=110.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------hhhhhHhhhc
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------FRAVTRSYYR   86 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~   86 (218)
                      ...+|+|+|.++||||||+++|..........+.++.......+.+.+  ..|.|||+||...       .....-.++.
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            356899999999999999999987544322223333333344444433  5788999999532       1111223467


Q ss_pred             cCCEEEEEEECCCh----hhHHHHHHHHHHHhhhc-----------CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC
Q psy1169          87 GAAGALMVYDITRR----STYNHLSSWLTDTKNLT-----------NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND  151 (218)
Q Consensus        87 ~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (218)
                      .+|++|+|+|+++.    ..++.+..+...+..+.           -.+.|++||+||+|+.+..... +.........+
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g  314 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARG  314 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcC
Confidence            89999999999863    34455555544444332           1368999999999996544322 23333334457


Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHHHhh
Q psy1169         152 LIFVEASAMTGENVEQAFLETAKKIYQNI  180 (218)
Q Consensus       152 ~~~~~~S~~~~~~i~~~~~~i~~~~~~~~  180 (218)
                      ++++++||+++.|+++++.+|.+.+....
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            88999999999999999999998876643

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.3e-20  Score=155.85  Aligned_cols=155  Identities=19%  Similarity=0.158  Sum_probs=106.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhHhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSY   84 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   84 (218)
                      ...+|+|+|.+|||||||+++|++..... ...+..+.+.....+.+.+  ..+.+|||+|.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            34799999999999999999999865432 2233333333333444444  3578999999652        34445667


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      ++.+|++|+|+|+++..++.. ..+...+..   .+.|+++|+||+|+....   .+....+....+ ..+++||++|.|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g  186 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG  186 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence            899999999999999866543 234433332   579999999999985432   122222222233 347999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKIYQ  178 (218)
Q Consensus       165 i~~~~~~i~~~~~~  178 (218)
                      ++++|+++++.+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999988744

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.86  E-value=2.5e-20  Score=138.08  Aligned_cols=158  Identities=21%  Similarity=0.240  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEEEEE-------------------------C--C----
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKF---MPDCPHTIGVEFGTRIIEV-------------------------H--G----   61 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~--~----   61 (218)
                      ++|+++|+.|+|||||++.+.+...   ..+.....+.......+.+                         .  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999965411   1111111111111001000                         0  0    


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--  138 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--  138 (218)
                      ....+.|||+||++.+.......+..+|++++|+|+.++. ..+... .+..+...  ...|+++++||+|+......  
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIM--GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHc--CCCcEEEEEEchhccCHHHHHH
Confidence            1267899999999988887777888999999999999742 111111 22222221  22478999999999643221  


Q ss_pred             cHHHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         139 RYDEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       139 ~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ..+.+++++..   .+.+++++||+++.|++++++.+.+.+
T Consensus       158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            11334444433   256799999999999999998887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=7e-20  Score=150.47  Aligned_cols=159  Identities=24%  Similarity=0.161  Sum_probs=108.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-----------h
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-----------V   80 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~   80 (218)
                      ...++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++.  .+.+|||||......           .
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            45689999999999999999999976532 122222333333334444443  678999999643221           1


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHH-h----CCCcEE
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-E----NDLIFV  155 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~  155 (218)
                      ...+++.+|++|+|+|++++.+.+... ++..+..   .+.|+++|+||+|+.... ...++...... .    ..++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence            234678999999999999987776653 3333332   468999999999996221 11122222221 1    357899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHH
Q psy1169         156 EASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       156 ~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      ++||++|.|++++|+++.+.+.+
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=4e-20  Score=157.37  Aligned_cols=158  Identities=18%  Similarity=0.188  Sum_probs=113.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE--EEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG--TRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      ..+...|+|+|..++|||||+++|....+.....+..+.+..  ...+...+....+.||||||++.|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            456789999999999999999999887665543333332222  222333345688999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-------HhC--CCcEEEeccC
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-------EEN--DLIFVEASAM  160 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~S~~  160 (218)
                      ++|+|+|+++....+....|. .+   ...++|+++++||+|+....   .+.+....       ..+  .++++++||+
T Consensus       321 iaILVVDA~dGv~~QT~E~I~-~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk  393 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEAIN-YI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISAS  393 (742)
T ss_pred             EEEEEEECcCCCChhhHHHHH-HH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence            999999998854433333221 12   23578999999999986532   12222211       122  3689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAKKI  176 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~  176 (218)
                      +|.|++++|+.+....
T Consensus       394 tG~GIdeLle~I~~l~  409 (742)
T CHL00189        394 QGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCHHHHHHhhhhhh
Confidence            9999999999887653

>cd04163 Era Era subfamily

Probab=99.85  E-value=6.2e-20  Score=131.43  Aligned_cols=156  Identities=24%  Similarity=0.200  Sum_probs=102.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh--------hhhHhhhc
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTRSYYR   86 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   86 (218)
                      ..+|+++|++|+|||||+++|++.................... .......+.+||+||.....        ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            5789999999999999999998865432222111111111111 22334678899999964322        23445678


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCCH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENV  165 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i  165 (218)
                      .+|++++|+|+.+..+. ....+...+..   .+.|+++++||+|+........+....+.... ..+++++|++++.++
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            99999999999987221 11122233322   36899999999999743333333344444444 367999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         166 EQAFLETAKK  175 (218)
Q Consensus       166 ~~~~~~i~~~  175 (218)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999988764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=6.8e-20  Score=143.21  Aligned_cols=159  Identities=23%  Similarity=0.193  Sum_probs=105.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh--------hhhhHhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--------RAVTRSYY   85 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~   85 (218)
                      ..-.|+|+|.+|||||||+|+|++...........+.......+... ...++.+|||||....        .......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            34569999999999999999999876543322222222222222222 3368899999995432        22344567


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCC
Q psy1169          86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGEN  164 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~  164 (218)
                      ..+|++++|+|+++..+. .....+..+.   ..+.|+++|+||+|+.............+.... ...++++||+++.|
T Consensus        83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            899999999999983221 1112222222   246899999999999744333334455555543 35699999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKIY  177 (218)
Q Consensus       165 i~~~~~~i~~~~~  177 (218)
                      ++++++++.+.+.
T Consensus       159 v~~L~~~L~~~l~  171 (292)
T PRK00089        159 VDELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999998887763

>cd01895 EngA2 EngA2 subfamily

Probab=99.85  E-value=1.5e-19  Score=130.45  Aligned_cols=155  Identities=25%  Similarity=0.173  Sum_probs=102.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh----------h-hhhH
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----------R-AVTR   82 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~-~~~~   82 (218)
                      .++|+++|.+|+|||||+++|++..... ...+..........+..++  ..+.+||+||....          . ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5799999999999999999998765322 1122222222233333443  34679999996432          1 1112


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-HhC----CCcEEEe
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-EEN----DLIFVEA  157 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~  157 (218)
                      ..+..+|++++|+|+.++.+.... .++..+..   .+.|+++++||+|+...+....+...+.. ...    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            356789999999999998776543 23332222   46899999999999765423223322333 222    4679999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q psy1169         158 SAMTGENVEQAFLETAKK  175 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++.|++++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999888653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=1.3e-19  Score=145.47  Aligned_cols=162  Identities=15%  Similarity=0.092  Sum_probs=112.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-------hhhhHhhhcc
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-------RAVTRSYYRG   87 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   87 (218)
                      ...|+|+|.++||||||+|+|..........+.++.......+.+. ....+.++|+||....       .......+..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            3489999999999999999998765433323333333333344433 2235889999996431       1112235788


Q ss_pred             CCEEEEEEECC---ChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEEEeccC
Q psy1169          88 AAGALMVYDIT---RRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFVEASAM  160 (218)
Q Consensus        88 ~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S~~  160 (218)
                      +|++++|+|++   ....++.+..|++.+..+..  .+.|+++|+||+|+.....+ .+....+....+  .+++++||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999998   45667777777777665432  36899999999998654332 234444444433  468999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~  178 (218)
                      ++.+++++++.|.+.+.+
T Consensus       317 tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CCcCHHHHHHHHHHHhhh
Confidence            999999999999887754

>KOG4423|consensus

Probab=99.85  E-value=3.5e-23  Score=144.19  Aligned_cols=168  Identities=35%  Similarity=0.606  Sum_probs=144.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe-EEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      ..+.+|+.|+|..|+|||+++.+++...++..+..+++.++..+....+.. .+.+.+||+.|+++|..+...|++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            678999999999999999999999999999899999999888777766543 4688899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhc----CCCCeEEEEeeCCCCCCCcccc-HHHHHHHHHhCCCc-EEEeccCCCCC
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLT----NPNTVIFLIGNKMDLEGSRDVR-YDEAKKFAEENDLI-FVEASAMTGEN  164 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~-~~~~S~~~~~~  164 (218)
                      ..+|||++...+|+....|.+.+....    +..+|+++.+||+|+....... .....++.+++++. .+++|++.+.+
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            999999999999999999998776533    2467799999999986543322 35677788888876 99999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1169         165 VEQAFLETAKKIYQN  179 (218)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (218)
                      ++|+-..+++.++-.
T Consensus       182 i~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  182 IPEAQRELVEKILVN  196 (229)
T ss_pred             hhHHHHHHHHHHHhh
Confidence            999999999988664

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=1.1e-19  Score=134.47  Aligned_cols=118  Identities=19%  Similarity=0.311  Sum_probs=89.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC-CEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA-AGALMVY   95 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~   95 (218)
                      +|+++|++|+|||||+++|....+.....++ .................+.+||+||+..+...+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988776554333 2222222222223456789999999999988888899998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHhhh---cCCCCeEEEEeeCCCCCCC
Q psy1169          96 DITRR-STYNHLSSWLTDTKNL---TNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        96 d~~~~-~s~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~  135 (218)
                      |+.+. .++..+..|+..+...   ...++|+++++||+|+...
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            99997 6777776666554322   2358999999999998654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.85  E-value=8.4e-20  Score=153.72  Aligned_cols=157  Identities=17%  Similarity=0.175  Sum_probs=113.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +.|+++|..++|||||+++|.+.   .+..++.+..+.+.....+..++  ..+.|||+||++.|......++..+|++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999863   34444555566665555555554  78899999999999888888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccc--cHHHHHHHHHhC----CCcEEEeccCCCCCH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV--RYDEAKKFAEEN----DLIFVEASAMTGENV  165 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~~~~i  165 (218)
                      +|+|+++....+... .+..+..   .++| +++++||+|+.+....  ..+++..++...    +.+++++|+++|.|+
T Consensus        79 LVVDa~~G~~~qT~e-hl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI  154 (581)
T TIGR00475        79 LVVDADEGVMTQTGE-HLAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI  154 (581)
T ss_pred             EEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence            999999843222221 1222222   3567 9999999999754322  123455555443    578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1169         166 EQAFLETAKKIYQ  178 (218)
Q Consensus       166 ~~~~~~i~~~~~~  178 (218)
                      ++++..+.+.+..
T Consensus       155 ~eL~~~L~~l~~~  167 (581)
T TIGR00475       155 GELKKELKNLLES  167 (581)
T ss_pred             hhHHHHHHHHHHh
Confidence            9999888766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0096|consensus

Probab=99.85  E-value=6.7e-21  Score=133.26  Aligned_cols=162  Identities=31%  Similarity=0.578  Sum_probs=140.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...++++++|..|.||||++++.+.++|...+.++.+.......+..+.+.+.+..|||+|++.+..+...|+-.....|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            45899999999999999999999999999999999999877766655555799999999999999998888988999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      ++||+...-++.++..|.+.+...+ .++||++++||.|..... + ......+....++.|+++|++.+.|.+.-|-++
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~-~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK-V-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc-c-ccccceeeecccceeEEeecccccccccchHHH
Confidence            9999999999999999999988877 459999999999985443 1 123334555678899999999999999999999


Q ss_pred             HHHHH
Q psy1169         173 AKKIY  177 (218)
Q Consensus       173 ~~~~~  177 (218)
                      .+.+.
T Consensus       165 arKl~  169 (216)
T KOG0096|consen  165 ARKLT  169 (216)
T ss_pred             hhhhc
Confidence            88774

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=1.5e-19  Score=152.41  Aligned_cols=159  Identities=21%  Similarity=0.268  Sum_probs=113.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CC------CCceeeeEEEE--EEEE---CCeEEEEEEeeCcch
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP-----DC------PHTIGVEFGTR--IIEV---HGEKIKLQIWDTAGQ   74 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~~-----~~------~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~G~   74 (218)
                      ++.-+++|+|+.++|||||+.+|+...  +..     ..      ....+.+....  .+.+   ++..+.+.||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            456789999999999999999998632  111     00      01112222222  2222   455789999999999


Q ss_pred             hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-
Q psy1169          75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-  153 (218)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  153 (218)
                      .+|...+..++..+|++|+|+|+++....+....|....    ..+.|+++|+||+|+.....  .....++....++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCc
Confidence            999998999999999999999999987766666665432    24689999999999854321  12223333334443 


Q ss_pred             --EEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         154 --FVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       154 --~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                        ++++||++|.|+++++++|.+.+-
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              899999999999999999987764

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.84  E-value=1.1e-19  Score=156.02  Aligned_cols=155  Identities=23%  Similarity=0.275  Sum_probs=112.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ..+...|+|+|..++|||||+++|....+.....+..+.+.....+.+++  ..+.||||||++.|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            46778999999999999999999988776654444444444333444443  5788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH-------HHHhC--CCcEEEeccCCC
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK-------FAEEN--DLIFVEASAMTG  162 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-------~~~~~--~~~~~~~S~~~~  162 (218)
                      |+|+|+++...-+....|    ......++|++|++||+|+....   .+.+..       +...+  .++++++||++|
T Consensus       365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            999999985433333222    22223579999999999996432   111111       12222  368999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKK  175 (218)
Q Consensus       163 ~~i~~~~~~i~~~  175 (218)
                      .|++++|++|...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999998753

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=4e-20  Score=135.51  Aligned_cols=159  Identities=23%  Similarity=0.237  Sum_probs=106.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC------------------CCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD------------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ..++|+++|+.++|||||+++|+.......                  .....+.......+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            468999999999999999999985332110                  00112222222222212455688899999999


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHH-HHHHhC---
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAK-KFAEEN---  150 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~-~~~~~~---  150 (218)
                      .|.......+..+|++|+|+|+.+....+.... +..+..   .++|+++++||+|+...+.. ..++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~-l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEH-LKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHH-HHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccccccccc-cccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            988888888999999999999998755443332 333333   46889999999998722110 011222 333322   


Q ss_pred             ---CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         151 ---DLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       151 ---~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                         ..+++++||++|.|++++++.+.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               35799999999999999998887654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.83  E-value=1.1e-19  Score=153.11  Aligned_cols=146  Identities=21%  Similarity=0.195  Sum_probs=108.5

Q ss_pred             cCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh------hHhhh--ccCCEEEE
Q psy1169          22 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV------TRSYY--RGAAGALM   93 (218)
Q Consensus        22 G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   93 (218)
                      |++|+|||||+|++.+........+..+.+.....+.+++  ..+.+|||||..++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998776555555566666555555554  35789999998765432      33343  37899999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |+|.++.+..   ..+..++.   ..+.|+++++||+|+.+.+... .+.+.+.+..+++++++||+++.|++++++.+.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875432   22222222   2579999999999996655444 456778888899999999999999999999998


Q ss_pred             HHH
Q psy1169         174 KKI  176 (218)
Q Consensus       174 ~~~  176 (218)
                      +.+
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=3.6e-19  Score=134.14  Aligned_cols=160  Identities=22%  Similarity=0.168  Sum_probs=111.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh--------hhhhhhHhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTRSY   84 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~   84 (218)
                      .+.--|+++|.|++|||||+|++++.+..-......+++...+.+... ...++.|+||||.-        .+.......
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            345679999999999999999999988776555555555545555333 47799999999943        234456667


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHH-HHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWL-TDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTG  162 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~  162 (218)
                      +..+|+++||+|+.....-  -..++ +.+..   .+.|+++++||.|..............+.... -..++++||+++
T Consensus        83 l~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             hccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            8899999999999985432  11222 22222   36899999999998766552223333333332 235899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKIYQ  178 (218)
Q Consensus       163 ~~i~~~~~~i~~~~~~  178 (218)
                      .|++.+.+.+...+-+
T Consensus       158 ~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         158 DNVDTLLEIIKEYLPE  173 (298)
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999888777766533

>cd00880 Era_like Era (E

Probab=99.83  E-value=1.6e-19  Score=128.24  Aligned_cols=151  Identities=19%  Similarity=0.156  Sum_probs=103.0

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------hhhHhhhccCCEE
Q psy1169          20 IIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYRGAAGA   91 (218)
Q Consensus        20 v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~   91 (218)
                      |+|+.|+|||||++++.+.... ................... ....+.+||+||.....       .....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999876544 2222222222222222221 14678899999976433       2445578899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH---HHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD---EAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ++|+|..+........ +.....   ..+.|+++++||.|+.........   ...........+++++|+.++.|++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999987765554 332222   357999999999998755433221   112233346778999999999999999


Q ss_pred             HHHHHHH
Q psy1169         169 FLETAKK  175 (218)
Q Consensus       169 ~~~i~~~  175 (218)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=9.3e-19  Score=122.51  Aligned_cols=156  Identities=22%  Similarity=0.359  Sum_probs=117.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCC--------CCCC----CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF--------MPDC----PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA   79 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   79 (218)
                      .-...||+|+|+.++||||+++.+.....        ..+.    ..|...++....+  . ....+++++||||++|.-
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHHHHH
Confidence            34578999999999999999999976552        1111    1233333333222  1 235778999999999999


Q ss_pred             hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC--CCcEEEe
Q psy1169          80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN--DLIFVEA  157 (218)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~  157 (218)
                      +|.-+.+++.++|+++|.+.+..+ .....+..+....  .+|++|+.||.|+...  ++.+.++++....  .++++++
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeee
Confidence            999999999999999999999998 4444444333322  2999999999999765  4446777766654  8899999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q psy1169         158 SAMTGENVEQAFLETAKK  175 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~  175 (218)
                      ++.++.+..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999988887755

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=4.4e-19  Score=145.93  Aligned_cols=146  Identities=22%  Similarity=0.157  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhHhhhc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSYYR   86 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   86 (218)
                      ++|+++|.+|||||||+++|.+.... ....+..+.+.....+.+.+  ..+.+|||||.+.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999876532 12222233333344444544  6789999999875        2333456788


Q ss_pred             cCCEEEEEEECCChhhHH--HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCCCC
Q psy1169          87 GAAGALMVYDITRRSTYN--HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGE  163 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~  163 (218)
                      .+|++|+|+|+.+..+..  .+..|+.   .   .+.|+++|+||+|+....    ....++ ...++. ++++||.++.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998864432  2333332   2   368999999999974321    222222 234443 7999999999


Q ss_pred             CHHHHHHHHHH
Q psy1169         164 NVEQAFLETAK  174 (218)
Q Consensus       164 ~i~~~~~~i~~  174 (218)
                      |++++++.+.+
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999887

>KOG0076|consensus

Probab=99.83  E-value=6e-20  Score=126.76  Aligned_cols=162  Identities=26%  Similarity=0.398  Sum_probs=120.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC---CC----CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK---FM----PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY   84 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   84 (218)
                      ....+.|+|+|.-++|||||+..+....   +.    ....++.+....  ++.+.  ...+.+||..|++..+++|..|
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHH
Confidence            3456789999999999999998875321   11    122233333332  33333  5578899999999999999999


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhh-hcCCCCeEEEEeeCCCCCCCccccHHHHHHHH------HhCCCcEEEe
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA------EENDLIFVEA  157 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~  157 (218)
                      |..++++|++||+++++-|+.....++.+.. ..-.++|+++.+||.|+.+..++  .+++...      .....++.++
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~--~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA--AELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH--HHHHHHhhhhhhcCCccCccccc
Confidence            9999999999999999998887766555443 33368999999999999654332  3332222      2356779999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHh
Q psy1169         158 SAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      ||++|.|+++...|++..+-.+
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999887654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=5e-19  Score=152.83  Aligned_cols=172  Identities=23%  Similarity=0.240  Sum_probs=115.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----------hhhhh-h
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAV-T   81 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~   81 (218)
                      ..++|+++|.+|||||||+++|++.... ....+.++.+.....+.+++..  +.+|||+|..          .+..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999987642 1222333344444455565544  5689999953          22222 2


Q ss_pred             HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-Hh----CCCcEEE
Q psy1169          82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-EE----NDLIFVE  156 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~~  156 (218)
                      ..+++.+|++|+|+|+++..+++...- +..+..   .+.|+++|+||+|+.....  .+...... ..    ...++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            345789999999999999988877643 333332   4689999999999964322  11122111 11    2346799


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHh---hhcCcccccccccc
Q psy1169         157 ASAMTGENVEQAFLETAKKIYQN---IKDGKLNANMTESG  193 (218)
Q Consensus       157 ~S~~~~~~i~~~~~~i~~~~~~~---~~~~~~~~~~~~~~  193 (218)
                      +||++|.|++++++.+.+.+.+.   +++..++.......
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~  640 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQ  640 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHH
Confidence            99999999999999998887652   34444444444333

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.81  E-value=8.9e-19  Score=143.95  Aligned_cols=149  Identities=19%  Similarity=0.158  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcch--------hhhhhhhHhhhcc
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ--------ERFRAVTRSYYRG   87 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~   87 (218)
                      +|+++|.+|||||||+|+|++..... ...+..+.+.....+.+.+  ..+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999765321 1222223333333444443  45889999995        3344556677899


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVE  166 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~  166 (218)
                      +|++++|+|..+..+.... .+...+..   .+.|+++|+||+|+......    ..++ ...++ .++++||.++.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChH
Confidence            9999999999886544332 22222322   36899999999998654321    1222 33455 68999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         167 QAFLETAKKI  176 (218)
Q Consensus       167 ~~~~~i~~~~  176 (218)
                      ++++.+.+.+
T Consensus       150 ~ll~~i~~~l  159 (429)
T TIGR03594       150 DLLDAILELL  159 (429)
T ss_pred             HHHHHHHHhc
Confidence            9999888766

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=3.5e-18  Score=140.63  Aligned_cols=159  Identities=23%  Similarity=0.189  Sum_probs=106.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----------hhh-h
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRA-V   80 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~-~   80 (218)
                      ...++|+|+|.+|+|||||+++|++.... ....+..+.+.....+...+  ..+.+|||||...          +.. .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            35799999999999999999999976532 22223333333233333333  4567899999532          111 1


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH----HhCCCcEEE
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA----EENDLIFVE  156 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~  156 (218)
                      ...+++.+|++|+|+|++++.+.+... ++..+..   .+.|+++++||+|+...... .+....+.    ....+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence            224678999999999999987776653 3333332   46899999999998633211 11111111    224578999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHH
Q psy1169         157 ASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       157 ~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      +||+++.|++++++.+.+...+
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998876543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.81  E-value=2e-18  Score=148.85  Aligned_cols=153  Identities=14%  Similarity=0.129  Sum_probs=110.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----------hhHhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VTRSY   84 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~   84 (218)
                      .++|+++|.+|+|||||+|+|.+........+..+.+.  +...+......+.+||+||..++..          ....+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~--k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVER--KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEee--EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            46899999999999999999987654333333333333  3333344566788999999865532          12233


Q ss_pred             h--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          85 Y--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      +  ..+|++++|+|+++.+..   ..+..++..   .+.|+++++||+|+.+.+... .+.+++.+..+++++++|+.++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence            3  479999999999986542   233333433   469999999999987555443 5567788888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKI  176 (218)
Q Consensus       163 ~~i~~~~~~i~~~~  176 (218)
                      .|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.80  E-value=2e-18  Score=144.77  Aligned_cols=157  Identities=21%  Similarity=0.171  Sum_probs=103.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCce----eeeEEEEEE------------EECCeEEEEEEeeCcchhhhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI----GVEFGTRII------------EVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      ..-|+++|.+++|||||+++|.+..+........    +..+.....            .++.....+.||||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3469999999999999999999876654433222    111111100            000011248899999999999


Q ss_pred             hhhHhhhccCCEEEEEEECCCh---hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc------------cHH--
Q psy1169          79 AVTRSYYRGAAGALMVYDITRR---STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV------------RYD--  141 (218)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~------------~~~--  141 (218)
                      .++..++..+|++++|+|+++.   .+++.+.    .+.   ..++|+++++||+|+......            ...  
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            9999999999999999999984   4433332    122   246899999999998632100            000  


Q ss_pred             ----------HHHHHHHh--------------CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         142 ----------EAKKFAEE--------------NDLIFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       142 ----------~~~~~~~~--------------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                                ....+...              ...+++++||++|.|+++++.++......
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                      01111111              24679999999999999999988765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=3.3e-18  Score=147.75  Aligned_cols=156  Identities=19%  Similarity=0.115  Sum_probs=103.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhH
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTR   82 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~   82 (218)
                      .....+|+|+|.++||||||+|+|++..... ...+..+.+.........  ...+.+|||+|.+.        +.....
T Consensus       272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~  349 (712)
T PRK09518        272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--GTDFKLVDTGGWEADVEGIDSAIASQAQ  349 (712)
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--CEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence            3455789999999999999999999765321 222222223222222222  35688999999652        334455


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHH-HHhCCCcEEEeccCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF-AEENDLIFVEASAMT  161 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~S~~~  161 (218)
                      .++..+|++|+|+|+.+...... ..|...+..   .+.|+++|+||+|+....    .....+ ....+ ..+++||++
T Consensus       350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~lg~~-~~~~iSA~~  420 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWKLGLG-EPYPISAMH  420 (712)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHHcCCC-CeEEEECCC
Confidence            67889999999999987533221 134433332   579999999999985432    112222 22222 357999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (218)
                      |.|++++|+++++.+.+
T Consensus       421 g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        421 GRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCchHHHHHHHHhccc
Confidence            99999999999987743

>KOG0074|consensus

Probab=99.80  E-value=6e-19  Score=117.81  Aligned_cols=158  Identities=21%  Similarity=0.297  Sum_probs=115.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ..+.+||+++|--++|||||+..|.+... ....++.++....  +.+. ..+.+.+||++|+...+..|.+|+.++|++
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~--v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKK--VEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEE--Eeec-CcEEEEEEecCCccccchhhhhhhhccceE
Confidence            47899999999999999999999865443 3344555555433  3232 568999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhh-hcCCCCeEEEEeeCCCCCCCccccHHHHHHH----HHhCCCcEEEeccCCCCCHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF----AEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~S~~~~~~i~  166 (218)
                      |||+|.++..-|+++..-+-.+.. ..-..+|+.+.+||.|+.....+. +.+..+    .....+-+-++|++.+.++.
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-eia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-HHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            999999998888877554443333 223579999999999986554332 112111    11123346789999999988


Q ss_pred             HHHHHHHH
Q psy1169         167 QAFLETAK  174 (218)
Q Consensus       167 ~~~~~i~~  174 (218)
                      .-.+|+..
T Consensus       169 dg~~wv~s  176 (185)
T KOG0074|consen  169 DGSDWVQS  176 (185)
T ss_pred             Ccchhhhc
Confidence            88777763

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.80  E-value=3.9e-18  Score=122.34  Aligned_cols=150  Identities=20%  Similarity=0.289  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----------hhhhhhHhhhc
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAVTRSYYR   86 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~   86 (218)
                      +|+++|++|+|||||++.+.+..+.....++.+.+.....+..+.   .+.+||+||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996555444444444443333333333   78899999943          23344444544


Q ss_pred             ---cCCEEEEEEECCChhhH--HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHHHH--hCCCcEEEe
Q psy1169          87 ---GAAGALMVYDITRRSTY--NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKFAE--ENDLIFVEA  157 (218)
Q Consensus        87 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~  157 (218)
                         .++++++++|.....+.  ..+..|+..      .+.|+++++||+|+......  ..........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               45678899999876332  223334322      24889999999998543221  1122333332  345679999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q psy1169         158 SAMTGENVEQAFLETAKK  175 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~  175 (218)
                      |++++.++++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.79  E-value=3.4e-18  Score=143.88  Aligned_cols=156  Identities=20%  Similarity=0.236  Sum_probs=109.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhH
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ--KFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR   82 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   82 (218)
                      +|+|+|..++|||||+++|+..  .+....            ....+.+.......+....+.+.||||||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999862  222211            01123333333333444567889999999999998889


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHH-------hCCCcE
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAE-------ENDLIF  154 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~  154 (218)
                      .++..+|++|+|+|+.+.. ......|+..+..   .++|+++++||+|+...+.. ..+++..+..       ...+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            9999999999999998753 2333455554443   46899999999998654321 1233334432       235789


Q ss_pred             EEeccCCCC----------CHHHHHHHHHHHH
Q psy1169         155 VEASAMTGE----------NVEQAFLETAKKI  176 (218)
Q Consensus       155 ~~~S~~~~~----------~i~~~~~~i~~~~  176 (218)
                      +++||+++.          ++..+|+.+++.+
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            999999995          7888888777665

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.79  E-value=2.7e-18  Score=140.60  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=102.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeeEEEEEEEEC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-----------------------------DCPHTIGVEFGTRIIEVH   60 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   60 (218)
                      ....++|+++|..++|||||+.+|+.  +....                             +.....+.+...  ..+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence            35679999999999999999999985  22110                             112233333333  3344


Q ss_pred             CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHH--HHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL--SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      ...+.+.|||+||++.|.......+..+|++|+|+|+++.+++...  ..++. +.... ...|+++++||+|+....+.
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~  159 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEE  159 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHH
Confidence            4567899999999998876666677899999999999998543111  11111 12222 23578999999999642221


Q ss_pred             ----cHHHHHHHHHhCC-----CcEEEeccCCCCCHHHHH
Q psy1169         139 ----RYDEAKKFAEEND-----LIFVEASAMTGENVEQAF  169 (218)
Q Consensus       139 ----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~  169 (218)
                          ...++.+++...+     ++++++||+++.|+.+.+
T Consensus       160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence                1234555665543     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.79  E-value=1.6e-17  Score=125.40  Aligned_cols=151  Identities=24%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------hhhHhhhccCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYRGAA   89 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   89 (218)
                      +|+++|++|+|||||+++|.+........+..+.+.....+.+++  ..+++||+||.....       .....+++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            799999999999999999997653322222223333344444443  578899999964321       12345788999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHHhh-----------------------------------------h-----------
Q psy1169          90 GALMVYDITRRS-TYNHLSSWLTDTKN-----------------------------------------L-----------  116 (218)
Q Consensus        90 ~~i~v~d~~~~~-s~~~~~~~~~~~~~-----------------------------------------~-----------  116 (218)
                      ++++|+|+++.+ ..+.+...+.....                                         +           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 33333333221100                                         0           


Q ss_pred             -----------c--CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         117 -----------T--NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       117 -----------~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                                 .  ..-+|+++|+||+|+...     ++...++..  ..++++||+++.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  013689999999998532     444445443  4589999999999999999888754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=1.1e-17  Score=140.75  Aligned_cols=159  Identities=17%  Similarity=0.193  Sum_probs=111.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE--QKFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA   79 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   79 (218)
                      ..-+|+|+|..++|||||+++|+.  +.+....            ....+.+.......+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            467899999999999999999986  3332211            12344555555555556678999999999999999


Q ss_pred             hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHH-------hCC
Q psy1169          80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAE-------END  151 (218)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~  151 (218)
                      .+..+++.+|++|+|+|+.+....+.. .++..+..   .++|.++++||+|+...+.. ..+++..+..       ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            999999999999999999886443332 23333322   46889999999998654321 1233333332       235


Q ss_pred             CcEEEeccCCCC----------CHHHHHHHHHHHH
Q psy1169         152 LIFVEASAMTGE----------NVEQAFLETAKKI  176 (218)
Q Consensus       152 ~~~~~~S~~~~~----------~i~~~~~~i~~~~  176 (218)
                      ++++.+||++|.          ++..+|+.|++.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            779999999997          4666666555544

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.78  E-value=4.3e-18  Score=126.63  Aligned_cols=146  Identities=21%  Similarity=0.192  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-------------------------------CCCceeeeEEEEEEEECCeEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPD-------------------------------CPHTIGVEFGTRIIEVHGEKIK   65 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   65 (218)
                      ||+|+|.+|+|||||+++|+...-...                               ..+..+.+.....  +......
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--FSTPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE--EecCCce
Confidence            589999999999999999975321100                               0112222222222  2234457


Q ss_pred             EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc----HH
Q psy1169          66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR----YD  141 (218)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~  141 (218)
                      +.||||||++.|.......+..+|++|+|+|+++...-+... ....+.. . ...++++|+||+|+.......    ..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~-~-~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSL-L-GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHH-c-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            789999999887766666789999999999998764322221 1222222 1 123578899999986432211    12


Q ss_pred             HHHHHHHhCC---CcEEEeccCCCCCHHH
Q psy1169         142 EAKKFAEEND---LIFVEASAMTGENVEQ  167 (218)
Q Consensus       142 ~~~~~~~~~~---~~~~~~S~~~~~~i~~  167 (218)
                      +...+....+   .+++++||+++.|+.+
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            3444445544   4589999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.78  E-value=3.8e-17  Score=119.90  Aligned_cols=148  Identities=16%  Similarity=0.136  Sum_probs=96.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP--------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV   80 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (218)
                      .++|+++|..++|||||+++|+......              ......+.........++....++.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            4789999999999999999998531000              00001222222333344445567889999999888777


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhC-----C
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEN-----D  151 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~  151 (218)
                      ....+..+|++++|+|+.....-+.. ..+..+..   .++| +++++||+|+.......   .+++..+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            77788899999999999875433322 22333332   3566 77899999986432211   12344444432     4


Q ss_pred             CcEEEeccCCCCCHH
Q psy1169         152 LIFVEASAMTGENVE  166 (218)
Q Consensus       152 ~~~~~~S~~~~~~i~  166 (218)
                      ++++++||++|.|+.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.78  E-value=1.2e-17  Score=114.46  Aligned_cols=135  Identities=24%  Similarity=0.299  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----hhhhhhHhhhccCCEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   92 (218)
                      ||+++|+.|+|||||+++|.+...  .+..|....+.            =.++||||..    .+..........+|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999987654  33333322221            1257999943    33333444556899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCCCCCHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE  171 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~~~~  171 (218)
                      ++.|++++.+.-.     ..+...  -+.|+|-|+||+|+... ....+.++++....++. +|++|+.++.|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999999754211     111121  25789999999999733 23457777888776665 899999999999999887


Q ss_pred             HH
Q psy1169         172 TA  173 (218)
Q Consensus       172 i~  173 (218)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            64

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.78  E-value=4.9e-18  Score=139.10  Aligned_cols=153  Identities=17%  Similarity=0.160  Sum_probs=99.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCceeeeEEEEEEEEC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-------------------------------PDCPHTIGVEFGTRIIEVH   60 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   60 (218)
                      ....++|+++|.+++|||||+++|+...-.                               .+..+..+.+  .....++
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d--~~~~~~~   80 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTID--LAHKKFE   80 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccce--eeeEEEe
Confidence            456799999999999999999999842211                               0111222222  2333344


Q ss_pred             CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCC--hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR--RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      ...+.+.||||||++.|.......+..+|++|+|+|+++  ...-+.. .++..+.. . ...|+++++||+|+......
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~-~~~~~~~~-~-~~~~iivviNK~Dl~~~~~~  157 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR-EHVFLART-L-GINQLIVAINKMDAVNYDEK  157 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH-HHHHHHHH-c-CCCeEEEEEEccccccccHH
Confidence            456789999999998876655555788999999999987  3222221 22222222 1 12468999999999652211


Q ss_pred             ----cHHHHHHHHHhCC-----CcEEEeccCCCCCHHHHH
Q psy1169         139 ----RYDEAKKFAEEND-----LIFVEASAMTGENVEQAF  169 (218)
Q Consensus       139 ----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~  169 (218)
                          ..+++.+++...+     .+++++||++|.|+++..
T Consensus       158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                1234445554433     569999999999998754

>KOG0072|consensus

Probab=99.78  E-value=8e-19  Score=117.54  Aligned_cols=162  Identities=21%  Similarity=0.283  Sum_probs=116.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ++...+|+++|.-|+||||++-++.-++... ..|++++...    .++.+++.+.+||..|+-..+..|+.|+.+.|++
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve----~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVE----TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcc----ccccccccceeeEccCcccccHHHHHHhcccceE
Confidence            4578999999999999999998886555432 3344444332    2344778999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHh-hhcCCCCeEEEEeeCCCCCCCccc---cHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLEGSRDV---RYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      |||+|.+|..........+..+. ...-....+++++||.|+......   .......-.+..-+.++++||.++.|++.
T Consensus        90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            99999999876655544333332 222245778899999998543211   11111111223346699999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         168 AFLETAKKIYQ  178 (218)
Q Consensus       168 ~~~~i~~~~~~  178 (218)
                      +++|+.+-+.+
T Consensus       170 ~~DWL~~~l~~  180 (182)
T KOG0072|consen  170 AMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHhc
Confidence            99999988765

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.77  E-value=9.9e-18  Score=136.22  Aligned_cols=161  Identities=19%  Similarity=0.214  Sum_probs=103.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCceeeeEEEEE--------------EEE----CC------eEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRI--------------IEV----HG------EKIK   65 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~   65 (218)
                      +..++|+++|..++|||||+++|.+....   ++.....+.......              +..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45689999999999999999999643211   111111111111000              000    11      1357


Q ss_pred             EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHH
Q psy1169          66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDE  142 (218)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~  142 (218)
                      +.+||+||++.|..........+|++|+|+|+++.. ..+.. ..+..+...  ...|+++++||+|+......  ..++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            899999999999887777888899999999999753 21222 222222221  12468999999999654321  1233


Q ss_pred             HHHHHHhC---CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         143 AKKFAEEN---DLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       143 ~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      +..+....   +++++++||+++.|+++++++|...+
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            44444432   67899999999999999998888654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=3.2e-17  Score=117.34  Aligned_cols=168  Identities=16%  Similarity=0.195  Sum_probs=116.1

Q ss_pred             ccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc----------
Q psy1169           4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------   73 (218)
Q Consensus         4 ~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------   73 (218)
                      +....+.|.+....|+++|.++||||||||+|++.+.-.-...+.+.+.....+.+++.   +.++|.||          
T Consensus        13 a~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~   89 (200)
T COG0218          13 APDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEV   89 (200)
T ss_pred             cCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHH
Confidence            34445667778899999999999999999999997754445556666666666666554   77899999          


Q ss_pred             hhhhhhhhHhhhcc---CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--HHHH-HHH
Q psy1169          74 QERFRAVTRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--DEAK-KFA  147 (218)
Q Consensus        74 ~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~-~~~  147 (218)
                      .+.+..+...|++.   ..++++++|+.....-.+. ..++.+.   ..++|+++++||+|.....+...  ..+. .+.
T Consensus        90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~---~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~  165 (200)
T COG0218          90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLL---ELGIPVIVVLTKADKLKKSERNKQLNKVAEELK  165 (200)
T ss_pred             HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHH---HcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence            34566677777653   4567889999887554332 2222233   25799999999999876554431  2222 222


Q ss_pred             HhCCCc--EEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         148 EENDLI--FVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       148 ~~~~~~--~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      ......  ++..|+..+.|++++...|.+.+.+
T Consensus       166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            222222  7889999999999999888876643

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.77  E-value=1.9e-17  Score=134.50  Aligned_cols=163  Identities=17%  Similarity=0.215  Sum_probs=102.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEEEEE------------------C--C----eE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKF---MPDCPHTIGVEFGTRIIEV------------------H--G----EK   63 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~~   63 (218)
                      .....++|+++|+.++|||||+.+|.+...   ..+..+..+.........+                  +  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            345669999999999999999999954211   1111111222211100000                  0  0    13


Q ss_pred             EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cH
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RY  140 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~  140 (218)
                      ..+.|||+||++.|..........+|++++|+|+.++. ..+....+ ..+...  ...|+++++||+|+......  ..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            57899999999888765555566789999999999653 22222222 122221  12468999999999654322  12


Q ss_pred             HHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         141 DEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       141 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      +++..++..   .+.+++++||+++.|++++++.|.+.+
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            344444433   257899999999999999998887655

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.77  E-value=5e-17  Score=136.83  Aligned_cols=156  Identities=22%  Similarity=0.227  Sum_probs=101.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc----eeeeEEEEEEE--ECCeE-----E-----EEEEeeCcchhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT----IGVEFGTRIIE--VHGEK-----I-----KLQIWDTAGQERF   77 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~~   77 (218)
                      +...|+++|..++|||||+++|.+..........    .+..+......  ..+..     .     .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            4457999999999999999999866544333322    22111111000  00111     1     2689999999999


Q ss_pred             hhhhHhhhccCCEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc----cH--------H-
Q psy1169          78 RAVTRSYYRGAAGALMVYDITR---RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV----RY--------D-  141 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~--------~-  141 (218)
                      ..++...+..+|++|+|+|+++   +.+++.+..    +.   ..++|+++++||+|+......    .+        . 
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9888888999999999999998   444444322    22   247899999999998521100    00        0 


Q ss_pred             ----------HHHHHHHh---------------CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         142 ----------EAKKFAEE---------------NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       142 ----------~~~~~~~~---------------~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                                +.......               ..++++++||+++.|++++++.+...+
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                      01111111               235689999999999999998886544

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.76  E-value=8e-17  Score=136.28  Aligned_cols=155  Identities=15%  Similarity=0.126  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      -|+++|..++|||||+++|.+.   .+..+..+..+.+.....+...+ ...+.|||+||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            4789999999999999999853   23334333444443333332222 2357899999999987766777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc--HHHHHHHHHhC---CCcEEEeccCCCCCHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR--YDEAKKFAEEN---DLIFVEASAMTGENVEQ  167 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~~S~~~~~~i~~  167 (218)
                      |+|+++...-+.... +..+..   .++| +++|+||+|+.+.....  .+++.++....   ..+++++||++|.|+++
T Consensus        81 VVda~eg~~~qT~eh-l~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVMAQTREH-LAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCcHHHHHH-HHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            999988533222222 222222   2355 67999999996532221  23444555443   36799999999999999


Q ss_pred             HHHHHHHHH
Q psy1169         168 AFLETAKKI  176 (218)
Q Consensus       168 ~~~~i~~~~  176 (218)
                      +++.|.+..
T Consensus       157 L~~~L~~~~  165 (614)
T PRK10512        157 LREHLLQLP  165 (614)
T ss_pred             HHHHHHHhh
Confidence            998887654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.75  E-value=4.4e-17  Score=123.13  Aligned_cols=113  Identities=18%  Similarity=0.173  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-------------CC---CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMP-------------DC---PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV   80 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (218)
                      +|+++|..|+|||||+++|+...-..             .+   ....+.........+....+.+.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            48999999999999999998532110             00   011122222233333445678899999999998888


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      ...+++.+|++|+|+|+.+.... ....++..+..   .++|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            88999999999999999987543 33444444443   468999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1423|consensus

Probab=99.75  E-value=7.4e-17  Score=121.49  Aligned_cols=163  Identities=20%  Similarity=0.160  Sum_probs=110.2

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh------------h
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER------------F   77 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~   77 (218)
                      ....+.++|+|+|+|++|||||.|.+++....+......+.+.....+ +.....++.|+||||...            +
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHh
Confidence            345788999999999999999999999998887666655555444444 344667999999999321            1


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHH---------------
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE---------------  142 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---------------  142 (218)
                      .+.....+..+|.+++++|+++....-.- ..+..+..+  ..+|-++++||.|....+.+....               
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence            22345567889999999999974432111 122333332  368889999999975432221111               


Q ss_pred             -HHHHHHhC---------CCc----EEEeccCCCCCHHHHHHHHHHHH
Q psy1169         143 -AKKFAEEN---------DLI----FVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       143 -~~~~~~~~---------~~~----~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                       ..++....         +++    +|.+||++|+|++++-++|+..+
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence             11111111         121    88999999999999999988766

>cd04167 Snu114p Snu114p subfamily

Probab=99.75  E-value=4.6e-17  Score=121.58  Aligned_cols=113  Identities=23%  Similarity=0.280  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------CCceeeeEE--EEEEEE---CCeEEEEEEeeCcch
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDC-----------------PHTIGVEFG--TRIIEV---HGEKIKLQIWDTAGQ   74 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~G~   74 (218)
                      +|+|+|+.|+|||||+++|+........                 ....+.+..  ...+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999865433210                 001111211  112212   345688999999999


Q ss_pred             hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      ..+......++..+|++|+|+|+.+..+++. ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9988888888999999999999988766543 334443322   358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.74  E-value=6.6e-17  Score=128.74  Aligned_cols=156  Identities=22%  Similarity=0.194  Sum_probs=106.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh--------hH
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TR   82 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   82 (218)
                      -+..+|++++|.|+||||||+|.|++....-.. .+.++-+.-...+.+  ..+.+.++||+|..+-...        ..
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i--~G~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL--NGIPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE--CCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence            355699999999999999999999987644322 223333333334444  4466778899996543332        33


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      ..++.+|.+++|+|.+.+.+-++..- +.    ....+.|+++|.||.|+........  .   ....+.+++.+|++++
T Consensus       292 ~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~--~---~~~~~~~~i~iSa~t~  361 (454)
T COG0486         292 KAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELES--E---KLANGDAIISISAKTG  361 (454)
T ss_pred             HHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccch--h---hccCCCceEEEEecCc
Confidence            45789999999999999633222211 11    2335789999999999976543211  1   1123446899999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q psy1169         163 ENVEQAFLETAKKIYQN  179 (218)
Q Consensus       163 ~~i~~~~~~i~~~~~~~  179 (218)
                      .|++.+.+.|.+.+...
T Consensus       362 ~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         362 EGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCHHHHHHHHHHHHhhc
Confidence            99999988888777654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.74  E-value=6.3e-17  Score=128.54  Aligned_cols=177  Identities=24%  Similarity=0.197  Sum_probs=118.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----------hhh-hh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRA-VT   81 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~-~~   81 (218)
                      ..+||+|+|.|++|||||+|+|++.+..- ...+.++.+.-...++++++  .+.++||+|...          |.. -.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            57999999999999999999999866432 22223333333444455554  456789999543          111 12


Q ss_pred             HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHH----h-CCCcEEE
Q psy1169          82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE----E-NDLIFVE  156 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~----~-~~~~~~~  156 (218)
                      ...+..+|++++|+|++.+-+-++..- ...+.   ..+.++++++||+|+.+......++.+....    . ..++.+.
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            345778999999999999877666532 22232   3578899999999987654343343332222    2 4567999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHh---hhcCccccccccccccc
Q psy1169         157 ASAMTGENVEQAFLETAKKIYQN---IKDGKLNANMTESGVQH  196 (218)
Q Consensus       157 ~S~~~~~~i~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~  196 (218)
                      +||+++.++..+|+.+.+.....   ++++.++..-..+...+
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~  373 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKH  373 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhC
Confidence            99999999999998887655443   55555555555555544

>PRK12736 elongation factor Tu; Reviewed

Probab=99.73  E-value=2e-16  Score=128.16  Aligned_cols=147  Identities=18%  Similarity=0.162  Sum_probs=95.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF   77 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (218)
                      ....++|+++|..++|||||+++|++.....              ......+.+.......++.....+.|||+||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4567999999999999999999998531100              00011222223333444445567889999999988


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhCC--
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEND--  151 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~--  151 (218)
                      .......+..+|++++|+|+.....-+... .+..+..   .++| +++++||+|+....+..   .+++..++...+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            776666678899999999998754333322 2222322   3577 67889999986433222   124445544433  


Q ss_pred             ---CcEEEeccCCC
Q psy1169         152 ---LIFVEASAMTG  162 (218)
Q Consensus       152 ---~~~~~~S~~~~  162 (218)
                         ++++++||+++
T Consensus       165 ~~~~~ii~vSa~~g  178 (394)
T PRK12736        165 GDDIPVIRGSALKA  178 (394)
T ss_pred             cCCccEEEeecccc
Confidence               57999999998

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.73  E-value=1.7e-16  Score=126.04  Aligned_cols=148  Identities=22%  Similarity=0.173  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh---------hhhhhHhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVTRSY   84 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~   84 (218)
                      ..|+++|.|+||||||+|||.+....  ..++.++ -+.......+.+  ..|.++||+|.+.         ........
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvT-RDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVT-RDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCc-cCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            57999999999999999999986643  2333332 222222333333  3488999999653         12234456


Q ss_pred             hccCCEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      +..||++|||+|....-+-++  +..|+   .   ..+.|+++|+||+|-...    .+.+.++....--..+.+||..|
T Consensus        81 i~eADvilfvVD~~~Git~~D~~ia~~L---r---~~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~ISA~Hg  150 (444)
T COG1160          81 IEEADVILFVVDGREGITPADEEIAKIL---R---RSKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHHHHHHHHHH---H---hcCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEeehhhc
Confidence            789999999999998655333  23332   2   246999999999996422    13333343333334899999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKI  176 (218)
Q Consensus       163 ~~i~~~~~~i~~~~  176 (218)
                      .|+.++++.+++.+
T Consensus       151 ~Gi~dLld~v~~~l  164 (444)
T COG1160         151 RGIGDLLDAVLELL  164 (444)
T ss_pred             cCHHHHHHHHHhhc
Confidence            99999999988876

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.73  E-value=5.8e-17  Score=121.47  Aligned_cols=145  Identities=21%  Similarity=0.249  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCceeeeEEEEEEEECCeEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKF--M-----------------------------PDCPHTIGVEFGTRIIEVHGEKIK   65 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   65 (218)
                      +|+++|..++|||||+.+|+...-  .                             .+..+..+.+...  ..+......
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~--~~~~~~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGL--AKFETEKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecce--EEEeeCCeE
Confidence            489999999999999999963210  0                             0111112222222  223334568


Q ss_pred             EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-------hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC--c
Q psy1169          66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-------TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS--R  136 (218)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~  136 (218)
                      +.+||+||+..+.......+..+|++|+|+|+++..       ..+....+ ..... . ...|+++++||+|+...  .
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~iiivvNK~Dl~~~~~~  155 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-L-GVKQLIVAVNKMDDVTVNWS  155 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-c-CCCeEEEEEEcccccccccc
Confidence            889999999887776667788899999999999842       11222222 22221 1 23689999999999632  1


Q ss_pred             cccH----HHHHHHHHhC-----CCcEEEeccCCCCCHH
Q psy1169         137 DVRY----DEAKKFAEEN-----DLIFVEASAMTGENVE  166 (218)
Q Consensus       137 ~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~i~  166 (218)
                      ....    +++..+....     +++++++||++|.|++
T Consensus       156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1111    2222233333     3679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12735 elongation factor Tu; Reviewed

Probab=99.73  E-value=3.7e-16  Score=126.68  Aligned_cols=148  Identities=14%  Similarity=0.112  Sum_probs=95.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC-------C---C--C--CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-------F---M--P--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF   77 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~-------~---~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (218)
                      ....++|+++|..++|||||+++|++..       +   .  .  ......+.+.......++....++.|+||||+..|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            3567999999999999999999998621       0   0  0  00011222222333334444567889999999988


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCCCCCcccc---HHHHHHHHHhC---
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF-LIGNKMDLEGSRDVR---YDEAKKFAEEN---  150 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~---~~~~~~~~~~~---  150 (218)
                      .......+..+|++++|+|+.+....+.. ..+..+.   ..++|.+ +++||+|+....+..   ..++..++...   
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            77666778899999999999875433322 2232232   2457755 579999996432211   12455555543   


Q ss_pred             --CCcEEEeccCCCC
Q psy1169         151 --DLIFVEASAMTGE  163 (218)
Q Consensus       151 --~~~~~~~S~~~~~  163 (218)
                        +++++++|++++.
T Consensus       165 ~~~~~ii~~Sa~~g~  179 (396)
T PRK12735        165 GDDTPIIRGSALKAL  179 (396)
T ss_pred             cCceeEEecchhccc
Confidence              3679999999985

>COG2262 HflX GTPases [General function prediction only]

Probab=99.72  E-value=5.4e-16  Score=121.55  Aligned_cols=164  Identities=21%  Similarity=0.126  Sum_probs=118.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh---------hhhhhhHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRS   83 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~   83 (218)
                      .....|.++|..++|||||+|+|.+........-..+.+...+.+.+.+ ...+.+.||.|.-         .|.+.. .
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-E  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-E  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-H
Confidence            4668999999999999999999997666555555556666677777764 3356677999932         244332 2


Q ss_pred             hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169          84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE  163 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (218)
                      ....+|+++.|+|++++...+.+......+....-...|+++|.||.|+..+..     .........-..+.+||+++.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~  342 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE  342 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence            356799999999999997777776666666665556799999999999765433     111111111147999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhcC
Q psy1169         164 NVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~~~~~~  183 (218)
                      |++.+.+.|.+.+.......
T Consensus       343 gl~~L~~~i~~~l~~~~~~~  362 (411)
T COG2262         343 GLDLLRERIIELLSGLRTEV  362 (411)
T ss_pred             CHHHHHHHHHHHhhhcccce
Confidence            99999999998887654433

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.72  E-value=3.7e-16  Score=126.71  Aligned_cols=146  Identities=16%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF----------------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ....++|+++|..++|||||+++|++...                ..+..+..+.+  ...+.++.....+.||||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence            46679999999999999999999973200                01111222223  3334455556678899999999


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCCCCCcccc---HHHHHHHHHhCC
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF-LIGNKMDLEGSRDVR---YDEAKKFAEEND  151 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~  151 (218)
                      .|..........+|++++|+|+......+.... +..+..   .++|.+ +++||+|+.+..+..   .+++++++...+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~-l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTREH-ILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            887655666678899999999988543333322 222322   356654 689999986543222   134556665543


Q ss_pred             -----CcEEEeccCCCC
Q psy1169         152 -----LIFVEASAMTGE  163 (218)
Q Consensus       152 -----~~~~~~S~~~~~  163 (218)
                           ++++++|++++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.72  E-value=4.4e-16  Score=116.66  Aligned_cols=153  Identities=19%  Similarity=0.217  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------c-------eeeeEEEEE-------------EEEC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----------------T-------IGVEFGTRI-------------IEVH   60 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~----------------~-------~~~~~~~~~-------------~~~~   60 (218)
                      ||+++|+.++|||||+.+|..+.+......                +       .+++.....             -.++
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999987655432111                0       011100000             0011


Q ss_pred             CeEEEEEEeeCcchhhhhhhhHhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          61 GEKIKLQIWDTAGQERFRAVTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      .....+.++|+||++.|.......+.  .+|++++|+|+.....-+. ..++..+..   .++|+++++||+|+......
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            22357789999999988665444443  6899999999987654332 233333332   46889999999998543222


Q ss_pred             c--HHHHHHHHH--------------------------hCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169         139 R--YDEAKKFAE--------------------------ENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus       139 ~--~~~~~~~~~--------------------------~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      .  ..++.++..                          ...++++.+|+.+|.|+++++..|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1  122222222                          1134799999999999998886653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1707|consensus

Probab=99.72  E-value=3.5e-17  Score=132.50  Aligned_cols=166  Identities=25%  Similarity=0.345  Sum_probs=121.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+++|+.|+||||||-.++..+|.+..++....-  ..-..+.-..+...|+|++....-+......++++|++
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi   83 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI   83 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence            4567999999999999999999999999887655432211  11112222344578999986655555567788999999


Q ss_pred             EEEEECCChhhHHHHHH-HHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHH-HHHHHHhC-CC-cEEEeccCCCCCH
Q psy1169          92 LMVYDITRRSTYNHLSS-WLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDE-AKKFAEEN-DL-IFVEASAMTGENV  165 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~~~-~~-~~~~~S~~~~~~i  165 (218)
                      .++|+++++++++.+.. |+..+.+..+  .++|||+|+||.|.........+. +..+..+. .+ ..++|||++-.++
T Consensus        84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~  163 (625)
T KOG1707|consen   84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV  163 (625)
T ss_pred             EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence            99999999999999854 7777776654  489999999999987655443232 22222221 12 1689999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy1169         166 EQAFLETAKKIYQN  179 (218)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (218)
                      .++|....+.++..
T Consensus       164 ~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  164 SELFYYAQKAVIHP  177 (625)
T ss_pred             Hhhhhhhhheeecc
Confidence            99998888877664

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.72  E-value=1.5e-16  Score=118.64  Aligned_cols=164  Identities=18%  Similarity=0.288  Sum_probs=101.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhh-----hhHhhhccCCE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRA-----VTRSYYRGAAG   90 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~   90 (218)
                      ||+++|+.|+||||+.+.+.++..+.+.. ..+.+.......+ ....+.+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999888776654333221 1222222222222 23556899999999875433     45677899999


Q ss_pred             EEEEEECCChhhHHHHHH---HHHHHhhhcCCCCeEEEEeeCCCCCCCc--cccH----HHHHHHHHhCC---CcEEEec
Q psy1169          91 ALMVYDITRRSTYNHLSS---WLTDTKNLTNPNTVIFLIGNKMDLEGSR--DVRY----DEAKKFAEEND---LIFVEAS  158 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~----~~~~~~~~~~~---~~~~~~S  158 (218)
                      +|||||+...+..+.+..   .+..+... .+++.+.++++|+|+....  ....    +.+.+.+...+   +.++.||
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999996554444444   44444443 3789999999999986432  1111    22333344444   7799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169         159 AMTGENVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~~~~  183 (218)
                      ..+ +.+-++|..+++.+..+.+.-
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~l  182 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTL  182 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHH
Confidence            998 479999999988887665443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>CHL00071 tufA elongation factor Tu

Probab=99.72  E-value=7e-16  Score=125.58  Aligned_cols=150  Identities=17%  Similarity=0.115  Sum_probs=99.0

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF----------------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ......++|+++|.+++|||||+++|+...-                ..+..+..+.+  .....++....++.|+|+||
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~~~~iDtPG   84 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITIN--TAHVEYETENRHYAHVDCPG   84 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEE--ccEEEEccCCeEEEEEECCC
Confidence            3456779999999999999999999986311                01111222222  22333444455778999999


Q ss_pred             hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHh
Q psy1169          74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEE  149 (218)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~  149 (218)
                      +..|.......+..+|++++|+|+.....-+... .+..+..   .++| +++++||+|+....+..   ..++..+...
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~  160 (409)
T CHL00071         85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK  160 (409)
T ss_pred             hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence            9888776777788999999999998764333222 2222322   3577 77899999997543221   1234445444


Q ss_pred             C-----CCcEEEeccCCCCCH
Q psy1169         150 N-----DLIFVEASAMTGENV  165 (218)
Q Consensus       150 ~-----~~~~~~~S~~~~~~i  165 (218)
                      .     .++++++|++++.++
T Consensus       161 ~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        161 YDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             hCCCCCcceEEEcchhhcccc
Confidence            3     367999999988643

>KOG1489|consensus

Probab=99.70  E-value=5.6e-16  Score=117.35  Aligned_cols=156  Identities=17%  Similarity=0.180  Sum_probs=110.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-------hhHhhhcc
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-------VTRSYYRG   87 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~   87 (218)
                      ...+.++|.|++|||||++.|...+......+.++.......+.+++.. ++.+-|+||..+-..       ..-..++.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence            3457899999999999999998655443333444444444444444333 488899999543221       22334678


Q ss_pred             CCEEEEEEECCCh---hhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCC
Q psy1169          88 AAGALMVYDITRR---STYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMT  161 (218)
Q Consensus        88 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~  161 (218)
                      +++++||+|++..   +.|+.+..++.++..+.+  ...|.++|+||+|+.+...   .....+.....-+ ++++||+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeecc
Confidence            9999999999998   888888887777776654  4789999999999853221   2234555554434 89999999


Q ss_pred             CCCHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAK  174 (218)
Q Consensus       162 ~~~i~~~~~~i~~  174 (218)
                      ++++.++++.+-+
T Consensus       352 ~egl~~ll~~lr~  364 (366)
T KOG1489|consen  352 GEGLEELLNGLRE  364 (366)
T ss_pred             ccchHHHHHHHhh
Confidence            9999998877654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.70  E-value=1.1e-15  Score=112.70  Aligned_cols=158  Identities=11%  Similarity=0.140  Sum_probs=92.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceee-eEEEEEEEEC-CeEEEEEEeeCcchhhhhh-----hhHhhhcc
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGV-EFGTRIIEVH-GEKIKLQIWDTAGQERFRA-----VTRSYYRG   87 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~-----~~~~~~~~   87 (218)
                      .+||+++|.+|+|||||+|.|.+...........+. ........+. .....+.+||+||......     +....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            378999999999999999999986543322222111 1101111111 1123688999999653222     12223567


Q ss_pred             CCEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc-----------ccHHHHHHHHH----h--
Q psy1169          88 AAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD-----------VRYDEAKKFAE----E--  149 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~--  149 (218)
                      +|+++++.+..    +... ..|++.+..   .+.|+++|+||+|+....+           ...+..++.+.    .  
T Consensus        81 ~d~~l~v~~~~----~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISSTR----FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCCC----CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            89888874422    2222 234444444   2578999999999843211           11122222222    1  


Q ss_pred             -CCCcEEEeccC--CCCCHHHHHHHHHHHHHHh
Q psy1169         150 -NDLIFVEASAM--TGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       150 -~~~~~~~~S~~--~~~~i~~~~~~i~~~~~~~  179 (218)
                       ...++|.+|+.  .+.++..+.+.+++.+-++
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence             12358999998  5688998888888877553

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.70  E-value=6.9e-16  Score=127.93  Aligned_cols=155  Identities=19%  Similarity=0.179  Sum_probs=116.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh------hhhhHhhh--c
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF------RAVTRSYY--R   86 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~   86 (218)
                      ..+|+++|+|++|||||+|+|.+........+..+++.....+...+..  ++++|.||....      +...+.|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            3569999999999999999999887776667777777666666665544  778899995432      22344444  4


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      +.|++|-|+|+++-+---.+   ..++.+   -+.|+++++|+.|....+.+. -+.+++.+..++|+++++|++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyl---tlQLlE---~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYL---TLQLLE---LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHHHHH---HHHHHH---cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            67999999999987542221   112222   478899999999987665544 56778888999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         167 QAFLETAKKIYQ  178 (218)
Q Consensus       167 ~~~~~i~~~~~~  178 (218)
                      ++...+++...+
T Consensus       154 ~l~~~i~~~~~~  165 (653)
T COG0370         154 ELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHhccc
Confidence            999888765433

>cd01850 CDC_Septin CDC/Septin

Probab=99.69  E-value=1.6e-15  Score=117.10  Aligned_cols=142  Identities=18%  Similarity=0.236  Sum_probs=93.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-----
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-----   78 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----   78 (218)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.........+..++..+.+.+|||||.....     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998776543          23444555555556667778899999999943210     


Q ss_pred             -------------h--------hhHhhhc--cCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          79 -------------A--------VTRSYYR--GAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        79 -------------~--------~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                                   .        .....+.  .+|+++|+++.+... ...+ ...++.+.    ..+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~~lk~l~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IEFMKRLS----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HHHHHHHh----ccCCEEEEEECCCcCC
Confidence                         0        0001222  467888888876521 1111 22333332    2689999999999865


Q ss_pred             Ccc--ccHHHHHHHHHhCCCcEEEeccC
Q psy1169         135 SRD--VRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       135 ~~~--~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      ..+  .....+.+.+..++++++.....
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            322  33455777778889998876654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04169 RF3 RF3 subfamily

Probab=99.69  E-value=2.1e-15  Score=115.87  Aligned_cols=116  Identities=19%  Similarity=0.212  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC---------C-----------ceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP---------H-----------TIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      -+|+|+|.+|+|||||+++|+...-.....         .           ..+.........++...+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            369999999999999999998531110000         0           01222333334455566889999999999


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      +|.......++.+|++|+|+|+++....+ ...++.....   .++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence            88877777889999999999998764322 2333333322   47899999999998554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.68  E-value=9.2e-16  Score=114.49  Aligned_cols=113  Identities=18%  Similarity=0.184  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CCC--------------CCCceeeeEEEEEEEEC--------CeEEEEEEeeCc
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKF--MPD--------------CPHTIGVEFGTRIIEVH--------GEKIKLQIWDTA   72 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   72 (218)
                      +|+++|..++|||||+.+|+...-  ...              .....+.......+.++        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999985321  100              01111111111122222        347889999999


Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      |+..|......+++.+|++|+|+|+.+....+....+ ....   ..++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence            9999999899999999999999999988766543322 2222   2468999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.68  E-value=1.2e-15  Score=123.94  Aligned_cols=147  Identities=22%  Similarity=0.267  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC--C-------------------------------CCCCceeeeEEEEEEEECCe
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFM--P-------------------------------DCPHTIGVEFGTRIIEVHGE   62 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~~~   62 (218)
                      ++|+++|..++|||||+.+|+...-.  .                               +.....+.+...  ..+...
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~--~~~~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAY--RYFSTD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeee--EEEccC
Confidence            58999999999999999999743211  0                               001111222222  223334


Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--  140 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--  140 (218)
                      ...+.||||||++.|.......+..+|++|+|+|+.....-+..+.|. .+....  ..++++++||+|+........  
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~--~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLG--IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence            457889999999988766666788999999999998764433333222 122211  235889999999864332111  


Q ss_pred             --HHHHHHHHhC---CCcEEEeccCCCCCHHH
Q psy1169         141 --DEAKKFAEEN---DLIFVEASAMTGENVEQ  167 (218)
Q Consensus       141 --~~~~~~~~~~---~~~~~~~S~~~~~~i~~  167 (218)
                        ++...+....   +++++++||++|.|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              2222333332   35699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03126 Elongation factor Tu; Provisional

Probab=99.68  E-value=2.2e-15  Score=123.99  Aligned_cols=147  Identities=15%  Similarity=0.108  Sum_probs=97.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC------C----------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------F----------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ....++|+++|..++|||||+++|+...      .          ..+.....+.+.  ....++.....+.+||+||++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~--~~~~~~~~~~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEE--EEEEEecCCcEEEEEECCCHH
Confidence            4667999999999999999999998521      1          112222223332  222233344577899999999


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhC-
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEN-  150 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~-  150 (218)
                      .|.......+..+|++++|+|+.+...-+..+ ++..+..   .++| +++++||+|+.......   .+++..+.... 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            98877777788999999999999865443333 3333332   3577 77899999996532221   12344444442 


Q ss_pred             ----CCcEEEeccCCCCC
Q psy1169         151 ----DLIFVEASAMTGEN  164 (218)
Q Consensus       151 ----~~~~~~~S~~~~~~  164 (218)
                          +++++++|+.++.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                57799999998854

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=2.4e-15  Score=121.50  Aligned_cols=156  Identities=21%  Similarity=0.215  Sum_probs=114.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..=|+++|....|||||+..+-...........++-+.....+..+. ..-.+.|+|||||+.|..+...-..-+|++|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            345689999999999999999987776655545444444444554431 2346788999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC---------CCcEEEeccCCCC
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN---------DLIFVEASAMTGE  163 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~~  163 (218)
                      +|+++++.--.|..+.    +......++|+++++||+|..+...   +....-.+++         ...++++||++|.
T Consensus        84 LVVa~dDGv~pQTiEA----I~hak~a~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          84 LVVAADDGVMPQTIEA----INHAKAAGVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEccCCcchhHHHH----HHHHHHCCCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999999754444332    3334446899999999999874432   2222222222         2458999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy1169         164 NVEQAFLETAKKI  176 (218)
Q Consensus       164 ~i~~~~~~i~~~~  176 (218)
                      |+++++..++-..
T Consensus       157 Gi~eLL~~ill~a  169 (509)
T COG0532         157 GIDELLELILLLA  169 (509)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999998877554

>KOG0462|consensus

Probab=99.68  E-value=9.8e-16  Score=123.40  Aligned_cols=162  Identities=20%  Similarity=0.238  Sum_probs=122.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCC--CC-------------CCCCceeeeEE-EEEEEECCeEEEEEEeeCcch
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKF--MP-------------DCPHTIGVEFG-TRIIEVHGEKIKLQIWDTAGQ   74 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~--~~-------------~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~   74 (218)
                      |.++.-++.|+..-..|||||..+|+...-  ..             +..+.+++... ...+..++..+.++++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            447778999999999999999999985321  11             11222222222 223333477899999999999


Q ss_pred             hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHHhCCCc
Q psy1169          75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAEENDLI  153 (218)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~  153 (218)
                      .+|.....+.+..++++|+|+|++....-|.+-+++..+.    .+..+|.|+||+|++..+.- ...+.+++......+
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE  211 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence            9999988899999999999999999887777777665554    47889999999999765432 223455555566667


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q psy1169         154 FVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       154 ~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      .+.+||++|.|++++|++|++.+
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhC
Confidence            99999999999999998888876

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.68  E-value=1.3e-15  Score=125.65  Aligned_cols=152  Identities=22%  Similarity=0.241  Sum_probs=96.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------------------------------CCCceeeeEEEEEEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---------------------------------CPHTIGVEFGTRIIE   58 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~   58 (218)
                      ....++|+++|..++|||||+.+|+...-...                                 .....+.+.  ....
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~--~~~~  101 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV--AYRY  101 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe--eEEE
Confidence            46679999999999999999999975321100                                 001122222  2222


Q ss_pred             ECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          59 VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      +.....++.||||||++.|.......+..+|++|+|+|+.....-+....+. .+....  ..|+++++||+|+......
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg--~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLLG--IKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHhC--CCceEEEEEeeccccchhH
Confidence            3344567889999999988765555679999999999998754322222221 122111  2468899999998643321


Q ss_pred             cHHH----HHHHHHhC----CCcEEEeccCCCCCHHHH
Q psy1169         139 RYDE----AKKFAEEN----DLIFVEASAMTGENVEQA  168 (218)
Q Consensus       139 ~~~~----~~~~~~~~----~~~~~~~S~~~~~~i~~~  168 (218)
                      ...+    ...+....    ..+++++||+++.|+++.
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1222    22223322    467999999999999864

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=2.3e-15  Score=115.76  Aligned_cols=138  Identities=16%  Similarity=0.116  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--C----------------CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKF--M----------------PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      +|+++|.+|+|||||+++|+...-  .                .+..+..+.+.....+.+  ...++.+|||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence            489999999999999999974211  0                111222233322333333  45678899999999888


Q ss_pred             hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc-ccHHHHHHHHHhCCCc-EEE
Q psy1169          79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD-VRYDEAKKFAEENDLI-FVE  156 (218)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~-~~~  156 (218)
                      ..+..+++.+|++|+|+|+.+...-+.. ..+..+..   .++|+++++||+|+.+... ...++++.......++ .++
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P  154 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP  154 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence            8888999999999999999886433222 23333332   4689999999999864321 1123333333322222 556


Q ss_pred             eccC
Q psy1169         157 ASAM  160 (218)
Q Consensus       157 ~S~~  160 (218)
                      +|+.
T Consensus       155 isa~  158 (270)
T cd01886         155 IGEE  158 (270)
T ss_pred             cccC
Confidence            6665

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.66  E-value=5.2e-15  Score=123.29  Aligned_cols=117  Identities=20%  Similarity=0.241  Sum_probs=81.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC--C----------------CCCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP--D----------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTA   72 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   72 (218)
                      ...-+|+|+|..++|||||+++|+...  ...  .                .....+.........++...+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            566799999999999999999997411  100  0                00011222333333344456788999999


Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      |+..|......+++.+|++|+|+|+.+....+ ...++.....   .++|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCccc
Confidence            99998887788899999999999998864322 2334433332   579999999999974

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=1.2e-15  Score=117.85  Aligned_cols=113  Identities=22%  Similarity=0.261  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCC------------------CceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCP------------------HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      +|+++|.+|+|||||+++|+...-.....                  ...+.......+.+  ..+.+.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence            48999999999999999997532111000                  01111211222222  44678899999998888


Q ss_pred             hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      .....++..+|++++|+|+++....+....| ..+.   ..+.|+++++||+|+...
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCC
Confidence            7788899999999999999987655433333 2232   246899999999998654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00049 elongation factor Tu; Reviewed

Probab=99.65  E-value=1.4e-14  Score=117.45  Aligned_cols=146  Identities=16%  Similarity=0.130  Sum_probs=95.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF----------------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ....++|+++|..++|||||+++|+....                ..+..+..+.+  .....+.....++.++||||+.
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHH
Confidence            35679999999999999999999986311                01112222222  3333444455678899999998


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCCCCCcccc---HHHHHHHHHhC-
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF-LIGNKMDLEGSRDVR---YDEAKKFAEEN-  150 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~---~~~~~~~~~~~-  150 (218)
                      .|.......+..+|++++|+|+.....-+.. ..+..+..   .++|.+ +++||+|+.......   ..++..+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            8877666778899999999999875433322 23333332   357865 589999996432211   12344444432 


Q ss_pred             ----CCcEEEeccCCCC
Q psy1169         151 ----DLIFVEASAMTGE  163 (218)
Q Consensus       151 ----~~~~~~~S~~~~~  163 (218)
                          +++++++||+++.
T Consensus       163 ~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        163 FPGDDTPIIRGSALKAL  179 (396)
T ss_pred             CCccCCcEEEeeccccc
Confidence                4689999999875

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.65  E-value=1.1e-14  Score=119.41  Aligned_cols=149  Identities=16%  Similarity=0.187  Sum_probs=99.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCceeeeEEEEEEEECC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF-------------------------------MPDCPHTIGVEFGTRIIEVHG   61 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (218)
                      ...++|+++|..++|||||+.+|+...-                               ..+.....+.+  .....+..
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~--~~~~~~~~   82 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITID--IALWKFET   82 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEE--EEEEEecC
Confidence            5568999999999999999999974210                               00111122222  23333445


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHH-------HHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN-------HLSSWLTDTKNLTNPNTV-IFLIGNKMDLE  133 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~  133 (218)
                      ....+.++|+||+++|.......+..+|++|+|+|+.+. .|+       .....+..+.   ..++| +++++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCC
Confidence            567888999999999998888889999999999999873 221       2222222222   24564 78889999985


Q ss_pred             CC--ccc----cHHHHHHHHHhCC-----CcEEEeccCCCCCHHH
Q psy1169         134 GS--RDV----RYDEAKKFAEEND-----LIFVEASAMTGENVEQ  167 (218)
Q Consensus       134 ~~--~~~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~  167 (218)
                      ..  ...    ..+++..++...+     ++++++||++|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            21  111    1244666666544     6799999999999854

>PRK13351 elongation factor G; Reviewed

Probab=99.65  E-value=6.5e-15  Score=127.32  Aligned_cols=120  Identities=18%  Similarity=0.228  Sum_probs=84.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------CCCCC---ceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-------------PDCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQ   74 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (218)
                      +.+...+|+|+|..|+|||||+++|+...-.             ..+.+   ..+.+.......+....+.+.+|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            4466789999999999999999999853210             00000   0111111111222234578899999999


Q ss_pred             hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      .+|...+..+++.+|++|+|+|+++....+....| ..+..   .++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            99988889999999999999999998776655444 22322   4689999999999853

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=2.4e-14  Score=109.34  Aligned_cols=161  Identities=20%  Similarity=0.181  Sum_probs=108.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh-----hhhhh---hHhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-----RFRAV---TRSY   84 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~---~~~~   84 (218)
                      +...-|+|.|.|+||||||++.+..-.......|.++......++..  +...++++||||.-     +...+   ....
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            46678999999999999999999887766555555555555555544  34567788999931     11111   1122


Q ss_pred             hc-cCCEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccC
Q psy1169          85 YR-GAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAM  160 (218)
Q Consensus        85 ~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~  160 (218)
                      ++ -.++++|+||.+..  -+.+.-..+++.+....+  .|+++|.||.|+.+....  +++...... .+.....+++.
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence            33 45678999999874  556666677777877664  899999999998654433  333333333 34436778888


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q psy1169         161 TGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~  179 (218)
                      .+.+++.+-..+...+.+.
T Consensus       320 ~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         320 KGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             ehhhHHHHHHHHHHHhhch
Confidence            8888887777777665543

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.63  E-value=1.3e-14  Score=119.07  Aligned_cols=149  Identities=17%  Similarity=0.181  Sum_probs=97.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC--CCC-----------------------------CCCCCceeeeEEEEEEEECC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFM-----------------------------PDCPHTIGVEFGTRIIEVHG   61 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   61 (218)
                      ...++|+++|..++|||||+.+|+..  ...                             ++.....+.+  .....++.
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid--~~~~~~~~   82 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITID--IALWKFET   82 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEE--eeeEEEcc
Confidence            56689999999999999999999751  111                             0111222333  23333445


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh-------HHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST-------YNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE  133 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~  133 (218)
                      ....+.|+|+||+.+|.......+..+|++|+|+|+.....       -+..+.| ..+..   .++| +++++||+|..
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~---~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFT---LGVKQMIVCINKMDDK  158 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHH---cCCCeEEEEEEccccc
Confidence            56788899999999998877778899999999999987531       1222222 22222   3566 67899999953


Q ss_pred             C--CccccH----HHHHHHHHhC-----CCcEEEeccCCCCCHHH
Q psy1169         134 G--SRDVRY----DEAKKFAEEN-----DLIFVEASAMTGENVEQ  167 (218)
Q Consensus       134 ~--~~~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~i~~  167 (218)
                      .  ..+..+    +++..+....     +++++++|+.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            2  111112    2333333332     46799999999999864

>TIGR00503 prfC peptide chain release factor 3

Probab=99.63  E-value=3.1e-14  Score=118.72  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=82.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhC--CCCC------C------------CCCceeeeEEEEEEEECCeEEEEEEeeC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMP------D------------CPHTIGVEFGTRIIEVHGEKIKLQIWDT   71 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~--~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   71 (218)
                      ..+..+|+|+|.+++|||||+++|+..  ....      .            .....+.........++...+.+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            356789999999999999999998632  1100      0            0011233333444445556788999999


Q ss_pred             cchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      ||+..|.......+..+|++|+|+|+.+.... ....+++....   .+.|+++++||+|+.
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            99998887777788999999999999875221 22334443332   468999999999973

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.63  E-value=1.2e-15  Score=109.16  Aligned_cols=117  Identities=23%  Similarity=0.369  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhh-hHh--hhccCCEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAV-TRS--YYRGAAGA   91 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~-~~~--~~~~~d~~   91 (218)
                      -.|+++|+.|+|||+|+.+|..+.......+. ...   ..+.+ ....-.+.++|+||+.+.+.. ...  +...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46899999999999999999988654433222 111   11112 223346778999999987653 333  47889999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHhhh---cCCCCeEEEEeeCCCCCCCc
Q psy1169          92 LMVYDITR-RSTYNHLSSWLTDTKNL---TNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        92 i~v~d~~~-~~s~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~  136 (218)
                      |||+|.+. .....++.+++..+...   ....+|++|+.||.|+...+
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            99999985 33444444443333322   24689999999999996654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.63  E-value=1.3e-14  Score=111.26  Aligned_cols=164  Identities=15%  Similarity=0.075  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----h---hHhhhccC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----V---TRSYYRGA   88 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~   88 (218)
                      .-|.++|.|++|||||++.+..-+......+.++.......+.+ ...-.|.+-|+||.-+-.+    +   .-..+.++
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            45779999999999999999875544444444455444555554 3334678889999543211    1   22345678


Q ss_pred             CEEEEEEECCChhh---HHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEE-EeccCCC
Q psy1169          89 AGALMVYDITRRST---YNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFV-EASAMTG  162 (218)
Q Consensus        89 d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~S~~~~  162 (218)
                      -++++|+|++..+.   .++......++..+..  .+.|.+||+||+|+....+......+.+........+ .+|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            99999999987653   4555455555554432  4788999999999766655544445555555444422 2999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q psy1169         163 ENVEQAFLETAKKIYQNI  180 (218)
Q Consensus       163 ~~i~~~~~~i~~~~~~~~  180 (218)
                      .|++++...+.+.+.+..
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999998888877664

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.63  E-value=2e-14  Score=97.05  Aligned_cols=106  Identities=22%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh---------hhhhhHhhhc
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVTRSYYR   86 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~   86 (218)
                      ||+|+|.+|+|||||+|+|++..... ...+..+.......+.+++..+  .++||||...         ........+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            69999999999999999999754321 1112222222234444555554  5999999532         1112233348


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeC
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK  129 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK  129 (218)
                      .+|++++|+|..++.. +....+++.+   . .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence            9999999999887422 2233343444   2 67999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.62  E-value=1.8e-14  Score=123.46  Aligned_cols=152  Identities=22%  Similarity=0.235  Sum_probs=94.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC------------CC---------------------CceeeeEEEEEE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD------------CP---------------------HTIGVEFGTRII   57 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~------------~~---------------------~~~~~~~~~~~~   57 (218)
                      ..+..++|+++|.+++|||||+++|+...-.-.            ..                     ...+.+..  ..
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~--~~   97 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVA--YR   97 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceee--ee
Confidence            345568999999999999999999985321100            00                     01111211  12


Q ss_pred             EECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          58 EVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        58 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      .+.....++.|+||||++.|.......+..+|++|+|+|+.....-+....+. .+...  ...++++++||+|+.....
T Consensus        98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~~  174 (632)
T PRK05506         98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL--GIRHVVLAVNKMDLVDYDQ  174 (632)
T ss_pred             EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh--CCCeEEEEEEecccccchh
Confidence            22334457789999999987665556688999999999998754332222221 12221  1256889999999864221


Q ss_pred             ccHH----HHHHHHHhCC---CcEEEeccCCCCCHHH
Q psy1169         138 VRYD----EAKKFAEEND---LIFVEASAMTGENVEQ  167 (218)
Q Consensus       138 ~~~~----~~~~~~~~~~---~~~~~~S~~~~~~i~~  167 (218)
                      ...+    +...+....+   .+++++||++|.|+.+
T Consensus       175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1112    2333333433   4689999999999874

>PLN03127 Elongation factor Tu; Provisional

Probab=99.62  E-value=2.3e-14  Score=117.45  Aligned_cols=143  Identities=14%  Similarity=0.123  Sum_probs=90.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhC------CC----------CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ------KF----------MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ....++|+++|..++|||||+++|.+.      ..          ..+..+..+.+  .....++....++.|+||||+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCcc
Confidence            456799999999999999999999632      10          01111223333  3333444455678899999998


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccccH---HHHHHHHHhC-
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY---DEAKKFAEEN-  150 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~---~~~~~~~~~~-  150 (218)
                      .|.......+..+|++++|+|+.+...-+.. ..+..+..   .++| +++++||+|+........   .+..++.... 
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt~-e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            8766555566779999999999876433332 22222222   4578 578899999975332111   1223333321 


Q ss_pred             ----CCcEEEeccC
Q psy1169         151 ----DLIFVEASAM  160 (218)
Q Consensus       151 ----~~~~~~~S~~  160 (218)
                          .++++++|+.
T Consensus       212 ~~~~~vpiip~Sa~  225 (447)
T PLN03127        212 FPGDEIPIIRGSAL  225 (447)
T ss_pred             CCCCcceEEEeccc
Confidence                4678888876

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.62  E-value=2.6e-14  Score=111.96  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEE---------------------ECC-eEEEEEEeeCcch-
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIE---------------------VHG-EKIKLQIWDTAGQ-   74 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~-   74 (218)
                      |+++|.+++|||||+++|.+........+..+.+.......                     .++ ..+.+.+||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998765322222222222221111                     122 3467999999997 


Q ss_pred             ---hhhhhhhHh---hhccCCEEEEEEECCC
Q psy1169          75 ---ERFRAVTRS---YYRGAAGALMVYDITR   99 (218)
Q Consensus        75 ---~~~~~~~~~---~~~~~d~~i~v~d~~~   99 (218)
                         ..+..+...   .++.+|++++|+|+..
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               334444344   4899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=1.9e-14  Score=114.49  Aligned_cols=160  Identities=24%  Similarity=0.243  Sum_probs=117.9

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCC--C-------------CCCCC--ceeeeEEEEEEEE-CCeEEEEEEeeC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF--M-------------PDCPH--TIGVEFGTRIIEV-HGEKIKLQIWDT   71 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~--~-------------~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~   71 (218)
                      .+..+.-+..++..-..|||||..||+...-  .             -+..+  |+..+.....+.. ++..+.++++||
T Consensus         4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT   83 (603)
T COG0481           4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT   83 (603)
T ss_pred             cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence            3456677889999999999999999975321  1             01222  2333322233333 458899999999


Q ss_pred             cchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH-HHHhC
Q psy1169          72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK-FAEEN  150 (218)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~  150 (218)
                      |||..|.....+.+..|.+.|+++|+++.-.-|.+.+.+..+.    .+.-++-|+||.||+....   +.+.+ ...-.
T Consensus        84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp---ervk~eIe~~i  156 (603)
T COG0481          84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP---ERVKQEIEDII  156 (603)
T ss_pred             CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH---HHHHHHHHHHh
Confidence            9999998888888899999999999999988888888776665    4677899999999976532   22222 22224


Q ss_pred             CCc---EEEeccCCCCCHHHHHHHHHHHH
Q psy1169         151 DLI---FVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       151 ~~~---~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ++.   .+.+||++|.|++++++.|++.+
T Consensus       157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         157 GIDASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             CCCcchheeEecccCCCHHHHHHHHHhhC
Confidence            443   78899999999999999998877

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.60  E-value=5.7e-14  Score=103.58  Aligned_cols=159  Identities=12%  Similarity=0.129  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------h-h---hH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP--HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------A-V---TR   82 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~---~~   82 (218)
                      ++|+++|.+|+|||||+|.|++........  +..+.........+.  ...+.++||||.....       . +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999876543321  111222222222233  3468899999954321       1 1   12


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCCcccc------HHHHHHHHHhCCCcE
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGSRDVR------YDEAKKFAEENDLIF  154 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~  154 (218)
                      ....++|++|+|+++.. .+-++ ...++.+....+.  -.++++++|+.|......+.      ....+.+.+..+-.|
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999887 22222 2223333333222  24678889998865432111      123444455544445


Q ss_pred             EEec-----cCCCCCHHHHHHHHHHHHHH
Q psy1169         155 VEAS-----AMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       155 ~~~S-----~~~~~~i~~~~~~i~~~~~~  178 (218)
                      +..+     +..+.+++++++.+.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            4444     44567788888777777765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.60  E-value=2.6e-14  Score=117.01  Aligned_cols=163  Identities=17%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEEE---------------EECC-----------
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKF---MPDCPHTIGVEFGTRII---------------EVHG-----------   61 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~-----------   61 (218)
                      ..+..++|.++|.-..|||||+..|.+...   .++.....+.+......               ..+.           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            346779999999999999999999985322   11211111111100000               0000           


Q ss_pred             -----eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          62 -----EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        62 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                           -...+.|+|+||++.|.......+..+|++++|+|+.+. ...+..+.+ ..+.. . .-.++++++||+|+.+.
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~-l-gi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEI-M-KLKHIIILQNKIDLVKE  186 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHH-c-CCCcEEEEEecccccCH
Confidence                 023678999999999877767777899999999999974 222222222 22222 1 12468999999999643


Q ss_pred             ccc--cHHHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         136 RDV--RYDEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       136 ~~~--~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ...  ..++++.+...   .+.+++++||++|.|++++++.|.+.+
T Consensus       187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            221  12334444332   467899999999999998888777543

>KOG1145|consensus

Probab=99.60  E-value=7.1e-14  Score=112.89  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=113.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ++..=|.|+|...-|||||+..|-+..........++-....-.+..+.+ -.++|.||||+..|..+..+-..-+|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            45667899999999999999999877665544333333333334444433 56778899999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH-HHHHHh--------CCCcEEEeccCCCC
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA-KKFAEE--------NDLIFVEASAMTGE  163 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~~~~~~--------~~~~~~~~S~~~~~  163 (218)
                      +|+.+.|.--.|.++    .|......++|+++.+||+|.++..   .+.+ +++...        .+..++++||++|.
T Consensus       230 LVVAadDGVmpQT~E----aIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  230 LVVAADDGVMPQTLE----AIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEEccCCccHhHHH----HHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            999999975444332    2444445789999999999976443   2333 333321        24568999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy1169         164 NVEQAFLETAKKI  176 (218)
Q Consensus       164 ~i~~~~~~i~~~~  176 (218)
                      |++.+.+.++-.+
T Consensus       303 nl~~L~eaill~A  315 (683)
T KOG1145|consen  303 NLDLLEEAILLLA  315 (683)
T ss_pred             ChHHHHHHHHHHH
Confidence            9998888776544

>PRK12739 elongation factor G; Reviewed

Probab=99.57  E-value=1.6e-13  Score=118.54  Aligned_cols=118  Identities=16%  Similarity=0.122  Sum_probs=82.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCC--C----------------CCCCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P----------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTA   72 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   72 (218)
                      +.+...+|+|+|..++|||||+++|+...-.  .                +..+..+.+.....+.+  ...++.++|||
T Consensus         4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTP   81 (691)
T PRK12739          4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTP   81 (691)
T ss_pred             CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCC
Confidence            3456789999999999999999999752110  0                01222333333333333  45678899999


Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      |+..+...+...+..+|++|+|+|+.+....+... .+..+..   .+.|+++++||+|+..
T Consensus        82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            99888888888999999999999998875444332 2322322   4688999999999863

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.57  E-value=3.1e-14  Score=93.49  Aligned_cols=136  Identities=18%  Similarity=0.202  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----hhhhhhHhhhccCCEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   92 (218)
                      |++++|..|+|||||.+.+.+...  .+..|..++       +....    .+||||.-    .+.+........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999976543  222232222       22111    46999943    22222334467889999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~  171 (218)
                      +|-.++++++.     +-..+...  -..|+|-+++|.||.++.  +.+..+.|..+-+. ++|++|+.++.|++++++.
T Consensus        70 ~v~~and~~s~-----f~p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESR-----FPPGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCcccc-----CCcccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999998762     11111221  135589999999997643  44677777777554 5999999999999999988


Q ss_pred             HHH
Q psy1169         172 TAK  174 (218)
Q Consensus       172 i~~  174 (218)
                      +..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            764

>KOG0077|consensus

Probab=99.57  E-value=1.8e-14  Score=99.15  Aligned_cols=155  Identities=15%  Similarity=0.192  Sum_probs=109.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...-|++++|--++|||||++.|.+..... +.||.-.+...  ..  -.++.++-+|.+|+..-+..|..|+..+|+++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPTSE~--l~--Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEE--LS--IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCChHH--he--ecCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            345689999999999999999997665433 23333222112  12  25678889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH---HhC-----------C---CcE
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA---EEN-----------D---LIF  154 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---~~~-----------~---~~~  154 (218)
                      +.+|+-+.+-|++.+.-++.+.... -..+|+++.+||+|.+...  ..++.+...   +..           +   +.+
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev  170 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV  170 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence            9999999999988877666554433 2579999999999987653  323322211   110           1   125


Q ss_pred             EEeccCCCCCHHHHHHHHHH
Q psy1169         155 VEASAMTGENVEQAFLETAK  174 (218)
Q Consensus       155 ~~~S~~~~~~i~~~~~~i~~  174 (218)
                      +.+|...+.+--+.|.|+.+
T Consensus       171 fmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  171 FMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEEEccCccceeeeehhh
Confidence            66887777776666666544

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.56  E-value=9.1e-14  Score=120.11  Aligned_cols=119  Identities=16%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-----C-------------CCCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-----D-------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTA   72 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   72 (218)
                      +.+..-+|+|+|..++|||||+++|+...-..     .             ..+.++.+.....+.+  ....+.+||||
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTP   83 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTP   83 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECC
Confidence            44567799999999999999999997422110     0             0112222322333333  45688999999


Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      |+..+......++..+|++|+|+|+.+....+... ++..+..   .++|+++++||+|+...
T Consensus        84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCC
Confidence            99888777888999999999999999876555433 2333322   46899999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.53  E-value=6.7e-13  Score=107.08  Aligned_cols=83  Identities=19%  Similarity=0.201  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE---------------------C-CeEEEEEEeeCcc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV---------------------H-GEKIKLQIWDTAG   73 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G   73 (218)
                      ++|+++|.+++|||||+++|.+........+..+.+.....+.+                     + .....+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987654322232222222222211                     1 1236789999999


Q ss_pred             hh----hhhhhhHhh---hccCCEEEEEEECC
Q psy1169          74 QE----RFRAVTRSY---YRGAAGALMVYDIT   98 (218)
Q Consensus        74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   98 (218)
                      ..    ....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            53    222344444   88999999999997

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.53  E-value=6.5e-13  Score=101.31  Aligned_cols=156  Identities=23%  Similarity=0.188  Sum_probs=106.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------hhhHhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSY   84 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~   84 (218)
                      +.-..+++++|+|++|||||++.|.+........+.++.+....++.+++  .++++.|+||.-.-.       ...-..
T Consensus        60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv  137 (365)
T COG1163          60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSV  137 (365)
T ss_pred             ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeee
Confidence            34567899999999999999999987665544445555555555555554  567788999954321       123456


Q ss_pred             hccCCEEEEEEECCChhh-HHHHHHHHHHHhh------------------------------------------------
Q psy1169          85 YRGAAGALMVYDITRRST-YNHLSSWLTDTKN------------------------------------------------  115 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~------------------------------------------------  115 (218)
                      .++||++|+|+|+....+ .+.+...+.....                                                
T Consensus       138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~  217 (365)
T COG1163         138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD  217 (365)
T ss_pred             eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence            789999999999987655 4443333222111                                                


Q ss_pred             ---------------h--cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         116 ---------------L--TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       116 ---------------~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                                     .  .-.-+|.++|.||.|+..     .++...+.+..  .++.+||..+.|++++.+.|.+.+
T Consensus       218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                           0  001367799999999854     24444454444  689999999999999998888766

>PRK09866 hypothetical protein; Provisional

Probab=99.52  E-value=1.5e-12  Score=108.26  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=71.9

Q ss_pred             EEEEEeeCcchhh-----hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          64 IKLQIWDTAGQER-----FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        64 ~~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      .++.|+||||...     ........+..+|+++||+|.....+..+. ...+.+.... .+.|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-QSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence            4678999999643     222344578999999999999875443332 2333333322 23699999999998543332


Q ss_pred             cHHHHHHHHH----hCC---CcEEEeccCCCCCHHHHHHHHHH
Q psy1169         139 RYDEAKKFAE----END---LIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus       139 ~~~~~~~~~~----~~~---~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      ..+.+..+..    ...   ..+|++||+.|.|++++++.|.+
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            2344444432    212   24999999999999999888775

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.51  E-value=2e-13  Score=102.08  Aligned_cols=161  Identities=17%  Similarity=0.213  Sum_probs=105.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE-EECCeEEEEEEeeCcchhh-------hhhhhHh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII-EVHGEKIKLQIWDTAGQER-------FRAVTRS   83 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~   83 (218)
                      ....++|+++|..|+|||||||+|..+...+...-..+.+...... .+++  -.+.|||+||.++       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            4567899999999999999999998655544322222222222221 1222  5788999999654       6777888


Q ss_pred             hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc-c------ccHH-----------HHHH
Q psy1169          84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR-D------VRYD-----------EAKK  145 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~------~~~~-----------~~~~  145 (218)
                      ++.+.|.+++++++.++.---+. ++++.+.... .+.++++++|.+|....- +      ....           ...+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999987432222 2333333322 347899999999975431 1      1111           1222


Q ss_pred             HHHhCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         146 FAEENDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       146 ~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      +++. -.|++.++.+.+-|++++...++..+-
T Consensus       192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         192 LFQE-VKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence            3333 346888899999999999988887663

>KOG3905|consensus

Probab=99.51  E-value=1.2e-12  Score=99.80  Aligned_cols=162  Identities=14%  Similarity=0.250  Sum_probs=113.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE--CCeEEEEEEeeCcchhhhhhhhHhhhccC---
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV--HGEKIKLQIWDTAGQERFRAVTRSYYRGA---   88 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---   88 (218)
                      ..-.|+|+|+.|+||||||.+|.+.+   ...+..+..|....+..  ++.-.++.+|-..|.-....+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            34579999999999999999998765   33334455554554433  23345777898888665555555544433   


Q ss_pred             -CEEEEEEECCChhh-HHHHHHHHHHHhh---------------------------------------------------
Q psy1169          89 -AGALMVYDITRRST-YNHLSSWLTDTKN---------------------------------------------------  115 (218)
Q Consensus        89 -d~~i~v~d~~~~~s-~~~~~~~~~~~~~---------------------------------------------------  115 (218)
                       ..+|++.|++++.. ++.+..|...+..                                                   
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             35699999999844 4666666554433                                                   


Q ss_pred             ----------hcCCCCeEEEEeeCCCCCC----C---ccc----cHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169         116 ----------LTNPNTVIFLIGNKMDLEG----S---RDV----RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus       116 ----------~~~~~~piivv~nK~Dl~~----~---~~~----~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                                ..+-++|++||.||+|...    .   +..    ....+++||..++..++.+|+++..|++.++.+|++
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                      1112588999999999832    1   111    112378889999999999999999999999999999


Q ss_pred             HHHH
Q psy1169         175 KIYQ  178 (218)
Q Consensus       175 ~~~~  178 (218)
                      +++-
T Consensus       288 r~yG  291 (473)
T KOG3905|consen  288 RSYG  291 (473)
T ss_pred             HhcC
Confidence            8843

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=3e-13  Score=106.30  Aligned_cols=155  Identities=19%  Similarity=0.197  Sum_probs=100.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC---------------------------CCCCceeeeEEEEEEEECCe
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP---------------------------DCPHTIGVEFGTRIIEVHGE   62 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~   62 (218)
                      ....++++|+|+..+|||||+-+|+...  +..                           ...+..+.+.......++-.
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            3567899999999999999999997421  110                           00011233333444444445


Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHH------HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH------LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      .+.+.|+|+||+..|-.........+|+.|+|+|+.+.+.-..      .++-+ .+.... .-..+||++||+|+..-+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tl-Gi~~lIVavNKMD~v~wd  161 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTL-GIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhc-CCceEEEEEEcccccccC
Confidence            6689999999999888777777788999999999999753211      11111 112211 123478889999998755


Q ss_pred             cccHHHHHH----HHHhC-----CCcEEEeccCCCCCHHHH
Q psy1169         137 DVRYDEAKK----FAEEN-----DLIFVEASAMTGENVEQA  168 (218)
Q Consensus       137 ~~~~~~~~~----~~~~~-----~~~~~~~S~~~~~~i~~~  168 (218)
                      +..++++..    +....     +++|+++|+..|.|+.+.
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            444444333    33222     366999999999998653

>KOG1191|consensus

Probab=99.51  E-value=1.4e-13  Score=109.99  Aligned_cols=165  Identities=19%  Similarity=0.147  Sum_probs=101.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhh--------hh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRA--------VT   81 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~   81 (218)
                      -+..++|+|+|+|++|||||+|.|......-.. .+.++-+  .....++-+.+.+.+.||+|..+ ...        -.
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRD--aiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRD--AIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchh--hheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence            355699999999999999999999887654322 2222223  33333334456677889999654 111        12


Q ss_pred             HhhhccCCEEEEEEEC--CChhhHHHHHHHHHHHhhhc------CCCCeEEEEeeCCCCCCC-ccccHHHHHHHHH---h
Q psy1169          82 RSYYRGAAGALMVYDI--TRRSTYNHLSSWLTDTKNLT------NPNTVIFLIGNKMDLEGS-RDVRYDEAKKFAE---E  149 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~~~~~~------~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~---~  149 (218)
                      ..-+..+|++++|+|+  ++-++-..+...+.......      ....+++++.||.|+... .+..- ....+..   .
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~  421 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGR  421 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccC
Confidence            3346789999999999  44333333333333222111      124778999999998654 21111 0111111   1


Q ss_pred             CCCc-EEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         150 NDLI-FVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       150 ~~~~-~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      ...+ +.++|++++.|++.+.+.+.+.+...
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            1233 56699999999999998888877554

>KOG1707|consensus

Probab=99.50  E-value=5.1e-13  Score=108.73  Aligned_cols=171  Identities=16%  Similarity=0.216  Sum_probs=125.5

Q ss_pred             cccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhH
Q psy1169           3 TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR   82 (218)
Q Consensus         3 ~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   82 (218)
                      .|+...+...+..+++.|+|+.++|||.+++.++++.+...+..+....+..+.+...+....+.+-|.+-. ....+..
T Consensus       413 ~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~  491 (625)
T KOG1707|consen  413 KLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTS  491 (625)
T ss_pred             hhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccC
Confidence            455567778899999999999999999999999999988877777788888888877777777788887754 2221112


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc-EEEeccCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMT  161 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~  161 (218)
                      .- ..+|+++++||.+++.+|..+...++.-. .. ...|+++|++|.|+.+..+.....-..++...+++ -+..|...
T Consensus       492 ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~-~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~  568 (625)
T KOG1707|consen  492 KE-AACDVACLVYDSSNPRSFEYLAEVYNKYF-DL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT  568 (625)
T ss_pred             cc-ceeeeEEEecccCCchHHHHHHHHHHHhh-hc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC
Confidence            12 67999999999999999988877554322 22 68999999999999765422222226778887765 34555553


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (218)
                      ... .++|..|...+..
T Consensus       569 ~~s-~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  569 LSS-NELFIKLATMAQY  584 (625)
T ss_pred             CCC-chHHHHHHHhhhC
Confidence            222 7888888876643

>KOG0090|consensus

Probab=99.50  E-value=5.9e-13  Score=95.66  Aligned_cols=115  Identities=18%  Similarity=0.270  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc---cCCEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR---GAAGAL   92 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i   92 (218)
                      -.|+++|+.++|||+|+-.|..+.+.....   +.......+.+...  .++++|.||+.+.+.....+++   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            469999999999999999998875433221   22222233333222  3778999999998887777776   789999


Q ss_pred             EEEECCCh-hhHHHHHHHHHHHh-hh--cCCCCeEEEEeeCCCCCCC
Q psy1169          93 MVYDITRR-STYNHLSSWLTDTK-NL--TNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        93 ~v~d~~~~-~s~~~~~~~~~~~~-~~--~~~~~piivv~nK~Dl~~~  135 (218)
                      ||+|...- .-..++.+++-.+. ..  ....+|++++.||.|+...
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA  160 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA  160 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence            99997652 22233333333333 32  2567889999999998543

>PRK00007 elongation factor G; Reviewed

Probab=99.49  E-value=1.2e-12  Score=113.10  Aligned_cols=119  Identities=17%  Similarity=0.170  Sum_probs=82.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCC--CCC----------------CCCCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP----------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTA   72 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   72 (218)
                      +.+...+|+|+|..++|||||+++|+...  ...                +..+..+.+.....+.+  ....+.++|||
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTP   83 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTP   83 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCC
Confidence            34668899999999999999999997421  100                01122333333333333  34678899999


Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      |+..|.......+..+|++|+|+|+......+...-|. .+..   .+.|+++++||+|+...
T Consensus        84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~---~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK---YKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCCCCC
Confidence            99887776777889999999999998775555443332 2332   46888999999998753

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.46  E-value=1.2e-12  Score=97.53  Aligned_cols=161  Identities=15%  Similarity=0.153  Sum_probs=89.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeEEEEEEEECCeEEEEEEeeCcchhhh--------hhh---hH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--------RAV---TR   82 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~---~~   82 (218)
                      ++|+|+|..|+||||++|.|++.........  ..+.........+++  ..+.++||||..+.        ..+   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            5899999999999999999998876554321  112222233334555  45678999993221        111   11


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCCcccc-------HHHHHHHHHhCCCc
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGSRDVR-------YDEAKKFAEENDLI  153 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~  153 (218)
                      ....+.|++|||+.... -+..+. ..++.+....+.  -..++|++|..|......+.       ....+.+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCc-chHHHH-HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            23467899999999983 222121 122222222222  23478888888754443311       01244555666666


Q ss_pred             EEEeccC------CCCCHHHHHHHHHHHHHHhh
Q psy1169         154 FVEASAM------TGENVEQAFLETAKKIYQNI  180 (218)
Q Consensus       154 ~~~~S~~------~~~~i~~~~~~i~~~~~~~~  180 (218)
                      |...+..      ....+.++|+.+-+.+.+.-
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            7776666      33467777777777776653

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.46  E-value=4.5e-13  Score=116.14  Aligned_cols=119  Identities=19%  Similarity=0.162  Sum_probs=82.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC---------------CCCC---CCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK---------------FMPD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ..+..+|+|+|+.++|||||+++|+...               +...   ...+.........+.+++..+.+.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            4567899999999999999999997521               1110   111222222222334566788999999999


Q ss_pred             hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      +..|.......++.+|++|+|+|+......+....|. .+.   ..+.|+++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhccc
Confidence            9988888888999999999999998754333322222 222   24578889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1490|consensus

Probab=99.46  E-value=6.3e-13  Score=106.47  Aligned_cols=167  Identities=15%  Similarity=0.133  Sum_probs=117.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----------hhhhhH
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRAVTR   82 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   82 (218)
                      ++.-..+|+|.|++|||||++.+..........+.++......++  +.....++++||||.-.          +.+ +.
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqs-IT  242 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQI-IT  242 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHH-HH
Confidence            455678999999999999999887766555544444444444443  33456788899999421          111 12


Q ss_pred             hhhccCCEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHH---HHHHHHhCCCcEEEe
Q psy1169          83 SYYRGAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE---AKKFAEENDLIFVEA  157 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~  157 (218)
                      ...+--.+++|+.|++..  .|...-..+++.+.... .+.|+|+|+||+|+.....++.+.   ...+....+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            223334568999998874  66666667777777766 578999999999998877776544   333344467899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169         158 SAMTGENVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~~~~~~~~~  183 (218)
                      |..+..|+-++-....+.++.+.-+.
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~RVE~  347 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAARVEQ  347 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHHHHHH
Confidence            99999999998888888777664433

>PRK12740 elongation factor G; Reviewed

Probab=99.46  E-value=2e-12  Score=111.80  Aligned_cols=107  Identities=20%  Similarity=0.224  Sum_probs=74.6

Q ss_pred             EcCCCCCHHHHHHHHHhCCCC--C----------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhH
Q psy1169          21 IGDMGVGKSCLLHQFTEQKFM--P----------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR   82 (218)
Q Consensus        21 ~G~~g~GKStli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   82 (218)
                      +|..++|||||+++|+...-.  .                +..+..+.......+.+  ..+.+.+|||||+..+.....
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence            699999999999999643211  0                00112222222233333  457889999999998877788


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      .++..+|++|+|+|++.....+....| ..+..   .+.|+++++||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            889999999999999987666554333 22322   468999999999985

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.44  E-value=3.7e-12  Score=98.32  Aligned_cols=125  Identities=11%  Similarity=0.071  Sum_probs=71.2

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-------h
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-------V   80 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~   80 (218)
                      +......++|+|+|.+|+||||++|+|++...... .....+..........  ....+.+|||||..+...       .
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHH
Confidence            34446789999999999999999999998664221 1111111111112222  346788999999654321       1


Q ss_pred             hHhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCC
Q psy1169          81 TRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGS  135 (218)
Q Consensus        81 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~  135 (218)
                      ...++  ...|++|||..++.....+.-...++.+....+.  -.+.++++|+.|....
T Consensus       110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            22222  2689999996655322111111223333332221  2458999999997543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.44  E-value=2.5e-12  Score=97.72  Aligned_cols=123  Identities=15%  Similarity=0.180  Sum_probs=72.4

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh--h------
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--A------   79 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~------   79 (218)
                      .+.....++|+|+|.+|+|||||+|+|++....... ....+..........  ....+.+|||||.....  .      
T Consensus        25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~--~g~~i~vIDTPGl~~~~~~~~~~~~~  102 (249)
T cd01853          25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV--DGFKLNIIDTPGLLESVMDQRVNRKI  102 (249)
T ss_pred             hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE--CCeEEEEEECCCcCcchhhHHHHHHH
Confidence            345677899999999999999999999987643321 111112211222222  33568899999965431  0      


Q ss_pred             --hhHhhhc--cCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCC
Q psy1169          80 --VTRSYYR--GAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEG  134 (218)
Q Consensus        80 --~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~  134 (218)
                        ....++.  ..|++++|..++... ...+ ...++.+....+.  -.++++|.||+|...
T Consensus       103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence              1223333  578888887666532 2221 1233333332222  245899999999753

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.43  E-value=6e-12  Score=111.20  Aligned_cols=143  Identities=22%  Similarity=0.247  Sum_probs=94.1

Q ss_pred             CHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe----------------EEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          27 GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------------KIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        27 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      +||||+..|-+..........++-+.....+..+..                .-.+.||||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            599999999887766554444444433333333210                0137899999999998888888889999


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc----------------HHHHH-------
Q psy1169          91 ALMVYDITRR---STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR----------------YDEAK-------  144 (218)
Q Consensus        91 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----------------~~~~~-------  144 (218)
                      +++|+|+++.   .+++.+.    .+..   .++|+++++||+|+.......                ..+..       
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            9999999873   3333332    2222   368999999999986422100                00000       


Q ss_pred             -HHHH--------------hCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         145 -KFAE--------------ENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       145 -~~~~--------------~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                       ++..              ...++++++||++|.|+++++..+....
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence             0111              1245799999999999999998776544

>TIGR00101 ureG urease accessory protein UreG

Probab=99.42  E-value=5.6e-12  Score=92.85  Aligned_cols=102  Identities=13%  Similarity=0.098  Sum_probs=63.4

Q ss_pred             EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA  143 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  143 (218)
                      ....++++.|..-......   .-+|.+|.|+|+.+..+...  .+..++.      ..-++++||.|+.+......+.+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            3455777777321111111   12578999999998766322  1111121      12289999999974322223333


Q ss_pred             HHHHH--hCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         144 KKFAE--ENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       144 ~~~~~--~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      .+..+  ..+.+++++|+++|.|++++|+++.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            33333  3678899999999999999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.41  E-value=1.4e-11  Score=98.61  Aligned_cols=88  Identities=23%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchh
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQE   75 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~   75 (218)
                      .....++|.++|.|++|||||+|+|.+........+..+.+.....+.+++.               ..++.++|+||..
T Consensus        17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            3466789999999999999999999876654444444444444444444322               2358899999953


Q ss_pred             h-------hhhhhHhhhccCCEEEEEEECC
Q psy1169          76 R-------FRAVTRSYYRGAAGALMVYDIT   98 (218)
Q Consensus        76 ~-------~~~~~~~~~~~~d~~i~v~d~~   98 (218)
                      .       .....-..++.+|++++|+|..
T Consensus        97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            2       1112233467899999999974

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.40  E-value=1.7e-11  Score=100.38  Aligned_cols=163  Identities=15%  Similarity=0.267  Sum_probs=112.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--eEEEEEEeeCcchhhhhhhhHhhhccC---
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG--EKIKLQIWDTAGQERFRAVTRSYYRGA---   88 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~---   88 (218)
                      ..-.|+|+|..++|||||+.+|.+.+   ...++.+.+|....+.-++  ....+.+|...|...+..+....+...   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34689999999999999999997644   3345556666555543322  234788999988666666665554422   


Q ss_pred             -CEEEEEEECCChhhH-HHHHHHHHHHhh--------------------------------h-----------c------
Q psy1169          89 -AGALMVYDITRRSTY-NHLSSWLTDTKN--------------------------------L-----------T------  117 (218)
Q Consensus        89 -d~~i~v~d~~~~~s~-~~~~~~~~~~~~--------------------------------~-----------~------  117 (218)
                       -++|+|+|.+.+..+ +.+..|+..+..                                .           .      
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence             357999999998664 344555443222                                0           0      


Q ss_pred             -------------CCCCeEEEEeeCCCCCC----Cccc-------cHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169         118 -------------NPNTVIFLIGNKMDLEG----SRDV-------RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus       118 -------------~~~~piivv~nK~Dl~~----~~~~-------~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                                   +-++|++||.+|+|...    ....       ...-.+.+|..+++.++.+|.+...+++.++.+|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                         01489999999999642    1111       11236777888999999999999999999999999


Q ss_pred             HHHHHh
Q psy1169         174 KKIYQN  179 (218)
Q Consensus       174 ~~~~~~  179 (218)
                      ++++..
T Consensus       261 h~l~~~  266 (472)
T PF05783_consen  261 HRLYGF  266 (472)
T ss_pred             HHhccC
Confidence            888543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd00066 G-alpha G protein alpha subunit

Probab=99.39  E-value=4.1e-11  Score=94.52  Aligned_cols=118  Identities=23%  Similarity=0.271  Sum_probs=83.7

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh----------hhHHHHHHHHHHHhhhcC-CCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDTKNLTN-PNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~piivv~nK~  130 (218)
                      ..+.+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....++.+..... .+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            457788999999999999999999999999999999873          223333333443333221 479999999999


Q ss_pred             CCCCC----------------ccccHHHHHHHHHh----------CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         131 DLEGS----------------RDVRYDEAKKFAEE----------NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       131 Dl~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      |+...                .....+.+..+...          ..+..+.++|.+..++..+|+.+.+.++..
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            96211                02233444444322          233456799999999999999999888764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1532|consensus

Probab=99.38  E-value=1.5e-12  Score=97.08  Aligned_cols=169  Identities=18%  Similarity=0.252  Sum_probs=97.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeEEEEEE--------------------------------
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT-IGVEFGTRII--------------------------------   57 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~--------------------------------   57 (218)
                      ..+...-|+|+|..|+|||||++||...-.....++. +..+.....+                                
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts   94 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS   94 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence            4567788999999999999999999643222211110 0000000000                                


Q ss_pred             ---------------EECCeEEEEEEeeCcchhhh------hhhhHhhhc--cCCEEEEEEECCChhhH-HHHHHHHHHH
Q psy1169          58 ---------------EVHGEKIKLQIWDTAGQERF------RAVTRSYYR--GAAGALMVYDITRRSTY-NHLSSWLTDT  113 (218)
Q Consensus        58 ---------------~~~~~~~~~~i~D~~G~~~~------~~~~~~~~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~~  113 (218)
                                     .-....+...++||||+.+.      ..++...+.  ..-++++++|.....+. --+.+.+-.+
T Consensus        95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc  174 (366)
T KOG1532|consen   95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC  174 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence                           00112345779999997541      122222232  33456777776543221 1233444445


Q ss_pred             hhhcCCCCeEEEEeeCCCCCCCcc-----ccHHHHHHHHH-------------------h--CCCcEEEeccCCCCCHHH
Q psy1169         114 KNLTNPNTVIFLIGNKMDLEGSRD-----VRYDEAKKFAE-------------------E--NDLIFVEASAMTGENVEQ  167 (218)
Q Consensus       114 ~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~-------------------~--~~~~~~~~S~~~~~~i~~  167 (218)
                      ....+...|.++++||.|+.+..-     .+++..++...                   +  .++..+-||+.+|.|+++
T Consensus       175 Silyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd  254 (366)
T KOG1532|consen  175 SILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD  254 (366)
T ss_pred             HHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence            555567899999999999965421     11111111111                   0  255688999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy1169         168 AFLETAKKIYQN  179 (218)
Q Consensus       168 ~~~~i~~~~~~~  179 (218)
                      +|..+.+.+-+.
T Consensus       255 f~~av~~~vdEy  266 (366)
T KOG1532|consen  255 FFTAVDESVDEY  266 (366)
T ss_pred             HHHHHHHHHHHH
Confidence            998888776444

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.37  E-value=2.9e-12  Score=97.35  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             hhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc
Q psy1169          75 ERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI  153 (218)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (218)
                      +++..+.+.++.++|++++|||+.++. +++.+..|+..+..   .++|+++|+||+||...+.+..+.+..+. ..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence            456677788999999999999999877 89999999876543   57999999999999765544434444443 47888


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q psy1169         154 FVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus       154 ~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      ++++||+++.|++++|+.+.+
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999987764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13768 GTPase; Provisional

Probab=99.37  E-value=5.2e-12  Score=96.50  Aligned_cols=111  Identities=21%  Similarity=0.226  Sum_probs=69.0

Q ss_pred             EEEEeeCcchhhh---hhhhHhhhc---c--CCEEEEEEECCChhhHHHHHH--HHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          65 KLQIWDTAGQERF---RAVTRSYYR---G--AAGALMVYDITRRSTYNHLSS--WLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        65 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      .+.+||+||..+.   ...+..+++   .  .+++++++|+...........  |+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            6789999997653   233333333   2  889999999976544333221  22211111 24799999999999865


Q ss_pred             CccccH--HHHH---------------------H---HHHhC--CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         135 SRDVRY--DEAK---------------------K---FAEEN--DLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       135 ~~~~~~--~~~~---------------------~---~~~~~--~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ..+...  ....                     .   .....  ..+++++|++++.|+++++++|.+.+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            533211  0000                     0   11122  25789999999999999999887765

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.37  E-value=8.9e-12  Score=84.84  Aligned_cols=114  Identities=29%  Similarity=0.324  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      +|++++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999997777654332 2221                           222234456778999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      |+.....+++.+  |...+....+...|.++++||.|+...+.+..+..        ..++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999998766  77666655556788999999999854333332222        235678888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.36  E-value=6.6e-12  Score=110.53  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=82.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCC--C--------------CCCCceeeeEEEEEEEE--------------CC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P--------------DCPHTIGVEFGTRIIEV--------------HG   61 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~   61 (218)
                      ++...+|+|+|..++|||||+++|+...-.  .              +.....+.......+.+              +.
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            567889999999999999999999854311  0              00111122211112222              12


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      ..+.+.++||||+.+|.......++.+|++|+|+|+......+...-|. .+.   ..++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHH---HCCCCEEEEEECCccc
Confidence            3677889999999999888888899999999999999876554443333 232   2578999999999985

>smart00275 G_alpha G protein alpha subunit

Probab=99.34  E-value=1.2e-10  Score=92.59  Aligned_cols=118  Identities=19%  Similarity=0.253  Sum_probs=82.3

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh----------hhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDTKNLT-NPNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piivv~nK~  130 (218)
                      ..+.+.+||.+|+...+..|..++.+++++|||+|+++-          ..+.+....++.+.... -.+.|+++++||.
T Consensus       182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~  261 (342)
T smart00275      182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI  261 (342)
T ss_pred             CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence            345678999999999999999999999999999999973          23334334444443321 1479999999999


Q ss_pred             CCCCC--------------c-cccHHHHHHHHHh-----------CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         131 DLEGS--------------R-DVRYDEAKKFAEE-----------NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       131 Dl~~~--------------~-~~~~~~~~~~~~~-----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      |+...              . ....+.+..+...           ..+..+.++|.+..++..+|+.+.+.+++.
T Consensus       262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            97311              0 0123333333321           123466789999999999999988888765

Subunit of G proteins that contains the guanine nucleotide binding site

>PTZ00416 elongation factor 2; Provisional

Probab=99.34  E-value=1.3e-11  Score=108.60  Aligned_cols=118  Identities=18%  Similarity=0.155  Sum_probs=81.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCC--CC--------------CCCCceeeeEEEEEEEEC--------CeEEEEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF--MP--------------DCPHTIGVEFGTRIIEVH--------GEKIKLQ   67 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~   67 (218)
                      .+...+|+|+|..++|||||+++|+...-  ..              +.....+.......+.+.        +..+.+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            45667999999999999999999986321  10              011111222111122222        2256788


Q ss_pred             EeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      |+||||+.+|.......++.+|++|+|+|+...-..+... .+..+..   .+.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHHH---cCCCEEEEEEChhhh
Confidence            9999999998887888899999999999999875544332 2333332   468999999999985

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.33  E-value=3.9e-11  Score=92.62  Aligned_cols=151  Identities=23%  Similarity=0.261  Sum_probs=99.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---------------------------------CCCCceeeeEEEEEEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---------------------------------DCPHTIGVEFGTRIIE   58 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~   58 (218)
                      .+..+|.+-+|...-||||||-||+...-.-                                 +....++++...+-  
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy--   80 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY--   80 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee--
Confidence            4567999999999999999999998643110                                 00111233322222  


Q ss_pred             ECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          59 VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      +.-..-.|+|-||||++.|-.....-...+|+.|+++|+...-.-|.-+.  ..+.... .-..+++..||+||.+..+-
T Consensus        81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH--s~I~sLL-GIrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH--SFIASLL-GIRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH--HHHHHHh-CCcEEEEEEeeecccccCHH
Confidence            22234478899999999998766666778999999999966533222222  1233222 12457888999999887654


Q ss_pred             cHHH----HHHHHHhCCCc---EEEeccCCCCCHHH
Q psy1169         139 RYDE----AKKFAEENDLI---FVEASAMTGENVEQ  167 (218)
Q Consensus       139 ~~~~----~~~~~~~~~~~---~~~~S~~~~~~i~~  167 (218)
                      .++.    ...|+...++.   ++++||+.|+|+..
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            4433    44566665554   89999999998753

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.32  E-value=1.5e-11  Score=91.37  Aligned_cols=56  Identities=18%  Similarity=0.163  Sum_probs=40.8

Q ss_pred             CCeEEEEeeCCCCCCCccccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169         120 NTVIFLIGNKMDLEGSRDVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       120 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      ..|.++++||+|+............+....  ...+++++|++++.|++++++++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            356799999999965432222334444433  34789999999999999999998864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01882 BMS1 Bms1

Probab=99.32  E-value=1.1e-10  Score=87.74  Aligned_cols=141  Identities=15%  Similarity=0.128  Sum_probs=83.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ......|+|+|.+|+|||||++.++............+.    ..+ .......+.++|+||..  ..+ ....+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence            345578999999999999999999864211111111110    111 12245567899999864  222 2346889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeE-EEEeeCCCCCCCcccc---HHHHHH-HHH--hCCCcEEEeccCCCCC
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDLEGSRDVR---YDEAKK-FAE--ENDLIFVEASAMTGEN  164 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~~~---~~~~~~-~~~--~~~~~~~~~S~~~~~~  164 (218)
                      ++++|+......+.. .++..+..   .+.|. ++|+||+|+.......   ....+. +..  ..+.+++.+||++...
T Consensus       108 llviDa~~~~~~~~~-~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         108 LLLIDASFGFEMETF-EFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEEecCcCCCHHHH-HHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            999999875443332 23333322   35664 5599999986432211   111222 221  2456799999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.31  E-value=3.9e-11  Score=94.36  Aligned_cols=110  Identities=11%  Similarity=0.048  Sum_probs=70.3

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cH
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RY  140 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~  140 (218)
                      .+.+.|+||+|.......   ....+|.++++.+.......+.+..   .+..     ..-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence            467889999997643322   4667999999977555555544332   1111     123899999998654321  11


Q ss_pred             HHHHHHHHh-------CCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169         141 DEAKKFAEE-------NDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       141 ~~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~  183 (218)
                      .+.......       +..+++.+|++++.|++++++.+.+.+-...+..
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg  266 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASG  266 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCC
Confidence            223322222       3367999999999999999999988765444433

>KOG1144|consensus

Probab=99.31  E-value=1.3e-11  Score=103.11  Aligned_cols=164  Identities=20%  Similarity=0.192  Sum_probs=108.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC----------------CeEEEEEEeeCcchhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------------GEKIKLQIWDTAGQERF   77 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~   77 (218)
                      +..=|||+|...+|||-|+..+-+..........++-......+...                -..-.+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            34569999999999999999998766554433333222211111111                01125678999999999


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC------ccc-------------
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS------RDV-------------  138 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------~~~-------------  138 (218)
                      ..+.......||++|+|+|+...-..+.+.    .+..++..+.|+||.+||+|..-.      ..+             
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiE----Si~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE----SINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhH----HHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            999999999999999999998863333332    233344478999999999995211      000             


Q ss_pred             -----cHHHHHHHHHh-CC-------------CcEEEeccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169         139 -----RYDEAKKFAEE-ND-------------LIFVEASAMTGENVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       139 -----~~~~~~~~~~~-~~-------------~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~  181 (218)
                           ...-+.+|+.+ ++             +.++++||..|.||.+++-+|++.....+.
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~  691 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV  691 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence                 00012222222 11             236899999999999999999988766543

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.30  E-value=2.7e-10  Score=90.31  Aligned_cols=83  Identities=19%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeE---------------EEEEEeeCcchhh----
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK---------------IKLQIWDTAGQER----   76 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~----   76 (218)
                      ++|.++|.|++|||||+|+|.+........+..+.+.....+.+++..               .++.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            799999999999999999999876443333444444444444444321               3588999999532    


Q ss_pred             ---hhhhhHhhhccCCEEEEEEECC
Q psy1169          77 ---FRAVTRSYYRGAAGALMVYDIT   98 (218)
Q Consensus        77 ---~~~~~~~~~~~~d~~i~v~d~~   98 (218)
                         .....-..++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1112223467899999999984

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.30  E-value=6.8e-11  Score=94.34  Aligned_cols=144  Identities=24%  Similarity=0.252  Sum_probs=98.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQK--FMP------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV   80 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (218)
                      .-+|+|+.....|||||+..|+...  |.+            ....-.+++.-.+..-+..+.+.+.|+||||+..|.-.
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            4579999999999999999998532  222            11112344444444344556688999999999999999


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHH-------HhCCC
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFA-------EENDL  152 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~-------~~~~~  152 (218)
                      .+..+.-+|++++++|+.+..-.|.- -.+   ......+.+.|+|.||+|.+..+.. ..+++.++.       .+.++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQTr-FVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQTR-FVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCchh-hhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            99999999999999999986433221 111   1222246677899999998776532 123344443       23678


Q ss_pred             cEEEeccCCC
Q psy1169         153 IFVEASAMTG  162 (218)
Q Consensus       153 ~~~~~S~~~~  162 (218)
                      |++..|++.|
T Consensus       161 PivYAS~~~G  170 (603)
T COG1217         161 PIVYASARNG  170 (603)
T ss_pred             cEEEeeccCc
Confidence            8999999865

>KOG0461|consensus

Probab=99.28  E-value=4.4e-10  Score=86.73  Aligned_cols=162  Identities=19%  Similarity=0.271  Sum_probs=97.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCceeeeEEEEEEEE-------CCeEEEEEEeeCcchhhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPHTIGVEFGTRIIEV-------HGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~   78 (218)
                      +-.+++.++|...+|||||.++|....       .+.+..+..+.+.....+.+       .+..+++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            445999999999999999999996422       22222333444444333332       3456799999999987655


Q ss_pred             hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC--ccccH-HHHHHHHH---h---
Q psy1169          79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS--RDVRY-DEAKKFAE---E---  149 (218)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~-~~~~~~~~---~---  149 (218)
                      ........-.|..++|+|+...-.-+.++.++  +....  -...++|+||.|....  |.-.. +..+++.+   .   
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            44444444557779999998876555555533  22222  1235777788776432  22111 22222222   1   


Q ss_pred             -CCCcEEEeccCCC----CCHHHHHHHHHHHHHH
Q psy1169         150 -NDLIFVEASAMTG----ENVEQAFLETAKKIYQ  178 (218)
Q Consensus       150 -~~~~~~~~S~~~~----~~i~~~~~~i~~~~~~  178 (218)
                       .+.|++++|+..|    ..+.++.+.+-+++++
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence             3578999999999    4555555555444443

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.28  E-value=9e-12  Score=108.39  Aligned_cols=118  Identities=19%  Similarity=0.167  Sum_probs=80.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC--------------CCCceeeeEEEE--EEEECCeEEEEEEeeCcc
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF--MPD--------------CPHTIGVEFGTR--IIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~--~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G   73 (218)
                      .++.-+|+|+|+.++|||||+.+|+...-  ...              .....+......  .+.+++..+.+.|+||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            46677899999999999999999985321  100              000111111111  122344577889999999


Q ss_pred             hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      +..|.......+..+|++|+|+|+......+...-|. .+..   .+.|.++++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH---cCCCeEEEEECchhh
Confidence            9998888888899999999999998865443333333 2222   346788999999975

>KOG0458|consensus

Probab=99.25  E-value=7.3e-11  Score=96.39  Aligned_cols=157  Identities=19%  Similarity=0.232  Sum_probs=103.5

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCC-----------------------------CCCCCceeeeEEEEEEEEC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-----------------------------PDCPHTIGVEFGTRIIEVH   60 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   60 (218)
                      .+....+.++|+|...+|||||+.+++..--.                             ....+..++........++
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe  251 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE  251 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence            34567899999999999999999998642100                             0111223444445555555


Q ss_pred             CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh---HHH---HHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YNH---LSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      -....+.|+|+||+..|-.....-...+|+.|+|+|++-.+-   |+.   .++-.. +.+..+ -..++|++||+|+.+
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~-llr~Lg-i~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHAL-LLRSLG-ISQLIVAINKMDLVS  329 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHH-HHHHcC-cceEEEEeecccccC
Confidence            666788999999998888777777788999999999987532   221   112111 222221 344889999999976


Q ss_pred             CccccHHHHHH----HH-Hh-----CCCcEEEeccCCCCCHHHH
Q psy1169         135 SRDVRYDEAKK----FA-EE-----NDLIFVEASAMTGENVEQA  168 (218)
Q Consensus       135 ~~~~~~~~~~~----~~-~~-----~~~~~~~~S~~~~~~i~~~  168 (218)
                      -.+..+++++.    |. +.     .++.++++|++.|.|+-..
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            55444454333    33 22     3456999999999987654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.24  E-value=3.6e-11  Score=90.85  Aligned_cols=111  Identities=19%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             EEEEeeCcchhhhhhhhHhhh--------ccCCEEEEEEECCChhhHHH-HHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          65 KLQIWDTAGQERFRAVTRSYY--------RGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      .+.|+||||+.++...+....        ...-++++++|.....+... +..++..+.....-+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            678999999987655333332        34456799999875443222 233333333333357999999999999762


Q ss_pred             cc------------c-------cHHHHHHHH---HhCC-C-cEEEeccCCCCCHHHHHHHHHHH
Q psy1169         136 RD------------V-------RYDEAKKFA---EEND-L-IFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       136 ~~------------~-------~~~~~~~~~---~~~~-~-~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      ..            .       .....++++   ...+ . .++++|+.++.++.+++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            10            0       001111222   2223 3 58999999999999988766554

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.22  E-value=5.9e-10  Score=86.20  Aligned_cols=138  Identities=17%  Similarity=0.291  Sum_probs=77.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC----------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------   76 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------   76 (218)
                      -.++|+|+|.+|+|||||+|.|+........          ..+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999875443321          22334444444455577888999999999221       


Q ss_pred             -----------hhhhhHh---------hhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          77 -----------FRAVTRS---------YYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        77 -----------~~~~~~~---------~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                                 |......         .=.++|++||.++.+... .-.++ ..++.+.    ..+++|-|+.|+|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCH
Confidence                       1111000         013568999999986531 22223 2333333    46889999999998654


Q ss_pred             ccccH--HHHHHHHHhCCCcEEE
Q psy1169         136 RDVRY--DEAKKFAEENDLIFVE  156 (218)
Q Consensus       136 ~~~~~--~~~~~~~~~~~~~~~~  156 (218)
                      .++..  ..+.+-....++.++.
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~  180 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFD  180 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S--
T ss_pred             HHHHHHHHHHHHHHHHcCceeec
Confidence            43321  2344444567776554

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=2.3e-10  Score=97.82  Aligned_cols=117  Identities=19%  Similarity=0.200  Sum_probs=87.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC------------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP------------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ....-+|.|+|+.++|||||..+|+...-..                  +..+.+++......+.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            5778899999999999999999998432111                  1111233333333333333 58899999999


Q ss_pred             hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      |.+|.......++-+|++++|+|+......+.-.-|.+..    ..++|.++++||+|..
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~  141 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRL  141 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECcccc
Confidence            9999999999999999999999999987666655554433    3689999999999963

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.21  E-value=3.7e-10  Score=80.70  Aligned_cols=148  Identities=18%  Similarity=0.156  Sum_probs=86.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEE-------------EEEEE-CC-------------------
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT-------------RIIEV-HG-------------------   61 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~-------------------   61 (218)
                      .++|-|.|++|||||+|+.+++..-.......-+..+.++             ..+.+ .+                   
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            6899999999999999999976421111000001111111             01101 00                   


Q ss_pred             --eEEEEEEeeCcchhhhhhhhHhhhccCC-EEEEEEECCChhhHHHHHHHHHHHhhhcCCC--CeEEEEeeCCCCCCCc
Q psy1169          62 --EKIKLQIWDTAGQERFRAVTRSYYRGAA-GALMVYDITRRSTYNHLSSWLTDTKNLTNPN--TVIFLIGNKMDLEGSR  136 (218)
Q Consensus        62 --~~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~Dl~~~~  136 (218)
                        ....+.|++..|.  .-  ....+.-.| .-|+|+|+...+-..          ....+.  ..=++|+||.||...-
T Consensus        93 ~~~~~Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P----------~K~gP~i~~aDllVInK~DLa~~v  158 (202)
T COG0378          93 DFPDLDLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIP----------RKGGPGIFKADLLVINKTDLAPYV  158 (202)
T ss_pred             cCCcCCEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCc----------ccCCCceeEeeEEEEehHHhHHHh
Confidence              1135556666661  10  111122234 668888888765311          110111  1248899999998776


Q ss_pred             cccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         137 DVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ..+.+.+.+-++.  .+.+++++|.++|.|++++++++....
T Consensus       159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            6666666555554  678899999999999999998887654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.20  E-value=5.1e-10  Score=93.79  Aligned_cols=124  Identities=13%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------h-
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------A-   79 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-   79 (218)
                      ..+-...++|+|+|.+|+||||++|.|++........ ...+...........  ...+.++||||.....       . 
T Consensus       112 ~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeI  189 (763)
T TIGR00993       112 QDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKI  189 (763)
T ss_pred             ccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHH
Confidence            3444567899999999999999999999876433221 111111111112223  3568899999965321       1 


Q ss_pred             --hhHhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCC--CeEEEEeeCCCCCC
Q psy1169          80 --VTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN--TVIFLIGNKMDLEG  134 (218)
Q Consensus        80 --~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~Dl~~  134 (218)
                        ....++.  .+|++|+|+.++.......-..+++.+....+..  ..+|||+|+.|...
T Consensus       190 Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       190 LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence              1222333  5899999998764433212223444454444332  33788899998754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>smart00053 DYNc Dynamin, GTPase

Probab=99.20  E-value=5.3e-10  Score=84.21  Aligned_cols=69  Identities=12%  Similarity=0.141  Sum_probs=45.5

Q ss_pred             EEEEEeeCcchhh-------------hhhhhHhhhcc-CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeC
Q psy1169          64 IKLQIWDTAGQER-------------FRAVTRSYYRG-AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK  129 (218)
Q Consensus        64 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK  129 (218)
                      ..+.++|+||...             ...+...|+++ .+++++|+|+...-.-+....+.+.+.   ..+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            4778999999631             22356667774 458899999876433333223333333   256889999999


Q ss_pred             CCCCCC
Q psy1169         130 MDLEGS  135 (218)
Q Consensus       130 ~Dl~~~  135 (218)
                      .|....
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3886|consensus

Probab=99.20  E-value=7.7e-11  Score=85.96  Aligned_cols=147  Identities=19%  Similarity=0.315  Sum_probs=90.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-----hhhHhhhccC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-----AVTRSYYRGA   88 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~~   88 (218)
                      .-||+++|.+|+|||++-..+..+... .....+.+++..-.++.+ -+++.+.+||.+|++.+-     ......++++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf-lGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF-LGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh-hhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            358999999999999965554432211 111222222322222222 245788999999998432     2445678899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhh--cCCCCeEEEEeeCCCCCCC--ccccHHHHHH----HHHhCCCcEEEeccC
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNL--TNPNTVIFLIGNKMDLEGS--RDVRYDEAKK----FAEENDLIFVEASAM  160 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~--~~~~~~~~~~----~~~~~~~~~~~~S~~  160 (218)
                      +++|++||++..+-..++..+-+.+...  ..+...+++..+|.|+...  ++..+.+..+    +....++.++++|.+
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            9999999999987766665544422222  2367779999999998643  3333333222    223345667788876


Q ss_pred             CC
Q psy1169         161 TG  162 (218)
Q Consensus       161 ~~  162 (218)
                      +.
T Consensus       163 De  164 (295)
T KOG3886|consen  163 DE  164 (295)
T ss_pred             hH
Confidence            44

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.3e-10  Score=88.78  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=103.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCceeeeE--E-----------------EEE-EEEC----CeEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPHTIGVEF--G-----------------TRI-IEVH----GEKIK   65 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~---~~~~~~~~~~~~~--~-----------------~~~-~~~~----~~~~~   65 (218)
                      +..++|.++|...-|||||...|.+--   ++++..+.++...  .                 ... ....    .-.-.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            678999999999999999999986421   1111111111100  0                 000 0000    11236


Q ss_pred             EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHH
Q psy1169          66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEA  143 (218)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~  143 (218)
                      +.|+|.||++-.-..--+-..-.|+.|+|++++.+-...+..+-+-.+....  -..++++-||.|+.....  -.++++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            7799999998654433333455799999999998643333333222222221  345889999999975432  244667


Q ss_pred             HHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         144 KKFAEE---NDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       144 ~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      ++|.+.   .+.|++++||..+.|++.+++.|.+.+-
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            777765   5789999999999999988888877763

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.19  E-value=2e-10  Score=82.52  Aligned_cols=63  Identities=19%  Similarity=0.191  Sum_probs=45.3

Q ss_pred             EEEEeeCcchhh----hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCC
Q psy1169          65 KLQIWDTAGQER----FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM  130 (218)
Q Consensus        65 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (218)
                      .+.|+|+||...    ...++..+++.+|++|+|.++....+-.....+.+......   ..+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence            467999999643    33578888899999999999999766555555555554432   3388888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0705|consensus

Probab=99.17  E-value=1.5e-10  Score=93.96  Aligned_cols=165  Identities=22%  Similarity=0.370  Sum_probs=123.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      -..+|+.|+|..++|||+|+++++.+.|.....+. +..+ .+++.++++...+.+.|-+|...     ..|...+|++|
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~-kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI  100 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRF-KKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV  100 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCc-Cccc-eeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence            35689999999999999999999999887664433 3333 55566788888888899888432     45667899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCC--CccccHHHHHHHHHh-CCCcEEEeccCCCCCHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEG--SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~  168 (218)
                      |||.+.+..+|+.+..+...+..+.. ..+|.++++++.-+..  .+.+...+.+.++.. ..+.||++++..|.++..+
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence            99999999999999877665554332 4677888887755432  344444555555544 5677999999999999999


Q ss_pred             HHHHHHHHHHhhhcCc
Q psy1169         169 FLETAKKIYQNIKDGK  184 (218)
Q Consensus       169 ~~~i~~~~~~~~~~~~  184 (218)
                      |..+...+....+.+.
T Consensus       181 f~~~~~k~i~~~~~qq  196 (749)
T KOG0705|consen  181 FQEVAQKIVQLRKYQQ  196 (749)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999988877644433

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.17  E-value=2.9e-10  Score=90.22  Aligned_cols=160  Identities=11%  Similarity=0.133  Sum_probs=76.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCc--eeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh-----
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHT--IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY-----   84 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----   84 (218)
                      ...++|+|+|.+|+|||||||.|.+-..... ..++  ...+.....+..+.. -++.+||.||......-...|     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            4568999999999999999999965332211 1111  111121222222222 268899999965322222333     


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC-------CCcccc----HHHHHHHHHh----
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE-------GSRDVR----YDEAKKFAEE----  149 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-------~~~~~~----~~~~~~~~~~----  149 (218)
                      +..-|.+|++.+..=.+.  ++ .+.+.+..   -+.|+++|-+|.|..       .++...    .+.+++.+..    
T Consensus       112 ~~~yD~fiii~s~rf~~n--dv-~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  112 FYRYDFFIIISSERFTEN--DV-QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GGG-SEEEEEESSS--HH--HH-HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             ccccCEEEEEeCCCCchh--hH-HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            456788777765432221  11 22333443   468899999999951       111111    1233333322    


Q ss_pred             CC---CcEEEeccCCC--CCHHHHHHHHHHHHHHh
Q psy1169         150 ND---LIFVEASAMTG--ENVEQAFLETAKKIYQN  179 (218)
Q Consensus       150 ~~---~~~~~~S~~~~--~~i~~~~~~i~~~~~~~  179 (218)
                      .+   .++|-+|..+-  .++..+.+.+.+.+-.+
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence            23   35888998875  45666666666655433

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.15  E-value=2.8e-09  Score=84.91  Aligned_cols=144  Identities=19%  Similarity=0.208  Sum_probs=85.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC----CCC-------------CCCCC-c-eeeeEE-----EEEEE-ECCeEEEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ----KFM-------------PDCPH-T-IGVEFG-----TRIIE-VHGEKIKLQ   67 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~----~~~-------------~~~~~-~-~~~~~~-----~~~~~-~~~~~~~~~   67 (218)
                      .-.+-|.|+|+.++|||||+++|.+.    ...             .+... + .+++..     ...+. .++....+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34588999999999999999999876    222             11111 1 111111     11222 244556788


Q ss_pred             EeeCcchhh-------------------------hhh----hhHhhhc-cCCEEEEEE-ECC----ChhhHHHH-HHHHH
Q psy1169          68 IWDTAGQER-------------------------FRA----VTRSYYR-GAAGALMVY-DIT----RRSTYNHL-SSWLT  111 (218)
Q Consensus        68 i~D~~G~~~-------------------------~~~----~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~  111 (218)
                      ++||+|...                         |..    -....+. ++++.|+|. |.+    .++.+... ..++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            999999321                         000    0233344 899998888 764    11222222 23444


Q ss_pred             HHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169         112 DTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT  161 (218)
Q Consensus       112 ~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (218)
                      .+.   ..++|+++++|+.|-....  ..+....+...++.+++.+|+.+
T Consensus       175 eLk---~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       175 ELK---ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             HHH---hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence            444   3679999999999942221  33445566666788878777654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0082|consensus

Probab=99.15  E-value=3.2e-09  Score=83.33  Aligned_cols=118  Identities=23%  Similarity=0.318  Sum_probs=82.7

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh-------HHHHHHHHHHHhhhcC----CCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST-------YNHLSSWLTDTKNLTN----PNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~piivv~nK~  130 (218)
                      ....+.++|.+|+..-+..|.+++.+++++|||+++++-..       .+.+.+-++.+.....    .+.++|+++||.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence            44778899999999888899999999999999999987322       2334333333333332    378899999999


Q ss_pred             CCCCC--------------cc-ccHHHHHHHHH--------h--CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         131 DLEGS--------------RD-VRYDEAKKFAE--------E--NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       131 Dl~~~--------------~~-~~~~~~~~~~~--------~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      |+-..              .. ...+++..+..        .  ..+.+..+.|.+..+|+.+|+.+.+.++++
T Consensus       273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            98211              11 23334444332        1  234466789999999999999999988775

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.15  E-value=7.4e-10  Score=86.88  Aligned_cols=104  Identities=14%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH-
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD-  141 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~-  141 (218)
                      .+.+.|+||+|.....   ......+|.++++......   +++......+     .+.|.++++||+|+......... 
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4678899999854322   2345667888877443333   3333332222     24667999999998654321100 


Q ss_pred             -----HHHHHHH---hCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         142 -----EAKKFAE---ENDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       142 -----~~~~~~~---~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                           ....+..   .+..+++++|++++.|++++++++.+..-
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                 0011111   13346899999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.09  E-value=1.3e-09  Score=82.91  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=99.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC-----------CCCCCCCce---------------eeeEEEEEEE--------
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK-----------FMPDCPHTI---------------GVEFGTRIIE--------   58 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~-----------~~~~~~~~~---------------~~~~~~~~~~--------   58 (218)
                      .+...|.|.|.||+|||||+..|...-           ..++.+.+-               ....+.+.+.        
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            455789999999999999999885311           111111110               1111111111        


Q ss_pred             ----------ECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q psy1169          59 ----------VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGN  128 (218)
Q Consensus        59 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~n  128 (218)
                                ++...+.+.|++|.|....+.   ....-+|.++++.-..-....|.++.-+.++..        ++|+|
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vIN  197 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVIN  197 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEe
Confidence                      112346788999998655442   234568999888887777777777665544443        89999


Q ss_pred             CCCCCCCccccHHH--HHHHH------HhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169         129 KMDLEGSRDVRYDE--AKKFA------EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       129 K~Dl~~~~~~~~~~--~~~~~------~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~  183 (218)
                      |.|.........+.  +..+.      ..+..+++.+||.++.|++++++.+.+........+
T Consensus       198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg  260 (323)
T COG1703         198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG  260 (323)
T ss_pred             ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence            99964332111111  11112      125677999999999999999998887765544433

>KOG0410|consensus

Probab=99.08  E-value=4.7e-10  Score=85.86  Aligned_cols=154  Identities=21%  Similarity=0.223  Sum_probs=101.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh---------hhhhhhHhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRSY   84 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~   84 (218)
                      ...-|.|+|..++|||||++.|.+-...+...-..+.+........+.+. .+.+.||.|.-         .|... -..
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT-Lee  254 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT-LEE  254 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH-HHH
Confidence            34568999999999999999998665555444444444444444444333 55678999932         23332 223


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe----EEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV----IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      ...+|.++.|.|++.+..-+.....+..+....-+..|    ++=|-||.|......-.         +.+. .+.+|++
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~---------E~n~-~v~isal  324 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE---------EKNL-DVGISAL  324 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc---------ccCC-ccccccc
Confidence            56799999999999998776666655555544322233    45567888874432111         1122 5789999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q psy1169         161 TGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~  179 (218)
                      +|+|++++++.+-......
T Consensus       325 tgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  325 TGDGLEELLKAEETKVASE  343 (410)
T ss_pred             cCccHHHHHHHHHHHhhhh
Confidence            9999999998887777554

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.3e-09  Score=85.14  Aligned_cols=129  Identities=20%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh--CCC------CC------------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE--QKF------MP------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~--~~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      -..+|+-.|.+|||||-+.|+-  +..      ..            +.....++...+..+.++.....++|.||||++
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            3468899999999999999862  111      00            000113444445555555567778899999999


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN  150 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~  150 (218)
                      .|..-....+..+|..++|+|+...-.-+.+ ++++.+..   .++||+-++||.|.....+  .+...+..+..
T Consensus        93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcrl---R~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L  161 (528)
T COG4108          93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCRL---RDIPIFTFINKLDREGRDP--LELLDEIEEEL  161 (528)
T ss_pred             ccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHhh---cCCceEEEeeccccccCCh--HHHHHHHHHHh
Confidence            9988888889999999999999886544333 44554544   5799999999999754332  24444444333

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=3.1e-09  Score=84.60  Aligned_cols=154  Identities=17%  Similarity=0.105  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKF---MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      -|.-.|.-.-|||||++.+.+...   .+.....++.+  ......+..+..+.|+|.||++++-...-..+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiD--lg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITID--LGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEe--eeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            467789999999999999976443   22333333333  3333344444578899999999988777777788999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh---CCCcEEEeccCCCCCHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE---NDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      |++.++.-..+..+...  +.... .....++|+||+|..+...+ .+..++....   .+.+++.+|+.+|.|++++-+
T Consensus        80 vV~~deGl~~qtgEhL~--iLdll-gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQTGEHLL--ILDLL-GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhhHHHHH--HHHhc-CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            99998776655554432  22222 12336899999998654322 1233333332   456789999999999999999


Q ss_pred             HHHHHH
Q psy1169         171 ETAKKI  176 (218)
Q Consensus       171 ~i~~~~  176 (218)
                      .|.+..
T Consensus       156 ~l~~L~  161 (447)
T COG3276         156 ELIDLL  161 (447)
T ss_pred             HHHHhh
Confidence            999887

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.07  E-value=1.3e-08  Score=79.52  Aligned_cols=139  Identities=14%  Similarity=0.241  Sum_probs=88.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-----
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-----   77 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----   77 (218)
                      .-.+.|+++|++|.|||||+|.|++......          ..++.........+.-++-.+++.++||||..++     
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4568999999999999999999987633322          2345555555556655777889999999993221     


Q ss_pred             ---------hhhhHhhh--------------ccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          78 ---------RAVTRSYY--------------RGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        78 ---------~~~~~~~~--------------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                               ......|+              .++|++||.+..+... +..++ ..++.+..    .+-+|-|..|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI-e~Mk~ls~----~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI-EAMKRLSK----RVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH-HHHHHHhc----ccCeeeeeeccccC
Confidence                     01111111              2568889988865532 22222 23333443    45578889999986


Q ss_pred             CCccccH--HHHHHHHHhCCCcEEE
Q psy1169         134 GSRDVRY--DEAKKFAEENDLIFVE  156 (218)
Q Consensus       134 ~~~~~~~--~~~~~~~~~~~~~~~~  156 (218)
                      ...++..  +.+.+....+++++|.
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC
Confidence            6544322  3455666678888774

>KOG0468|consensus

Probab=99.05  E-value=1.7e-09  Score=89.84  Aligned_cols=117  Identities=21%  Similarity=0.266  Sum_probs=84.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------ceeeeEEEEEE---EECCeEEEEEEeeC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-----------------TIGVEFGTRII---EVHGEKIKLQIWDT   71 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~D~   71 (218)
                      +....++.++|+-+.|||+|+..|.....+.-...                 ..++......+   ..++..+-++|+||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            47889999999999999999999976544322111                 11111111111   12567788999999


Q ss_pred             cchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      ||+..|.......++-+|++++++|+.+.-.++.-. .+   ......+.|+++|+||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~i---khaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-II---KHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HH---HHHHhccCcEEEEEehhHH
Confidence            999999998889999999999999999987764432 22   2233367999999999995

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.03  E-value=1.4e-09  Score=83.66  Aligned_cols=55  Identities=20%  Similarity=0.221  Sum_probs=39.7

Q ss_pred             CeEEEEeeCCCCCCCccccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169         121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       121 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      .+-++|+||+|+........+...+..+.  ...+++++|++++.|+++++++|.++
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            44699999999965322223333333333  56789999999999999999998764

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=5.4e-09  Score=79.19  Aligned_cols=144  Identities=17%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHh---CC-------------CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTE---QK-------------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ...-++|..+|.-.-|||||...+..   ..             .+++  ...+++....++.++-.+-.+-.+|+||+.
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccCCChH
Confidence            34568999999999999999988742   11             1111  223455556666665555567788999999


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhCC
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEND  151 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~  151 (218)
                      +|-..-..-....|+.|+|+++.+..-.+.-+..    .....-++| +++++||+|+.+++++.   ..+++++...++
T Consensus        87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----LlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~  162 (394)
T COG0050          87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG  162 (394)
T ss_pred             HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence            8876555556678999999999997554444432    222335676 67778999998765543   234667777765


Q ss_pred             C-----cEEEeccCC
Q psy1169         152 L-----IFVEASAMT  161 (218)
Q Consensus       152 ~-----~~~~~S~~~  161 (218)
                      +     |++.-|++.
T Consensus       163 f~gd~~Pii~gSal~  177 (394)
T COG0050         163 FPGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCCcceeechhhh
Confidence            4     477777764

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2e-08  Score=78.91  Aligned_cols=85  Identities=19%  Similarity=0.124  Sum_probs=60.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC----------------eEEEEEEeeCcchhh--
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG----------------EKIKLQIWDTAGQER--   76 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~~--   76 (218)
                      .+++.|+|.|+||||||+|.+..........|..+++.....+.++.                ....+.++|++|...  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998776555556666665555554321                235778999999432  


Q ss_pred             -----hhhhhHhhhccCCEEEEEEECCC
Q psy1169          77 -----FRAVTRSYYRGAAGALMVYDITR   99 (218)
Q Consensus        77 -----~~~~~~~~~~~~d~~i~v~d~~~   99 (218)
                           .....-.-++.+|+++.|+|+.+
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence                 22223334678999999999763

>cd01900 YchF YchF subfamily

Probab=99.02  E-value=1.5e-09  Score=83.46  Aligned_cols=81  Identities=22%  Similarity=0.152  Sum_probs=55.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhh------
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQER------   76 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~------   76 (218)
                      |+++|.|++|||||+|+|.+........+..+.+.....+.+.+.               ...+.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999987765444444454544555555432               23588999999432      


Q ss_pred             -hhhhhHhhhccCCEEEEEEECC
Q psy1169          77 -FRAVTRSYYRGAAGALMVYDIT   98 (218)
Q Consensus        77 -~~~~~~~~~~~~d~~i~v~d~~   98 (218)
                       .....-..++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1111223357899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.01  E-value=3.9e-10  Score=84.46  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=89.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCC-----------CCCCCCCc---------------eeeeEEEEEEEECC------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQK-----------FMPDCPHT---------------IGVEFGTRIIEVHG------   61 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~-----------~~~~~~~~---------------~~~~~~~~~~~~~~------   61 (218)
                      +.+.|.|.|+||+|||||++.|...-           ..++.+.+               .....+.+.+--.+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            56799999999999999999985310           00000000               01112222221111      


Q ss_pred             ------------eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeC
Q psy1169          62 ------------EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK  129 (218)
Q Consensus        62 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK  129 (218)
                                  ..+.+.|++|.|....+   .....-+|.+++|.-..-....|.++.-+.++..        ++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence                        13677889998854433   2235669999999998887777766654444433        899999


Q ss_pred             CCCCCCccccHHHHHHHHHh-------CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         130 MDLEGSRDVRYDEAKKFAEE-------NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      .|....... ..+.+.....       +..+++.+||.++.|++++++.|.+.....
T Consensus       177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            995433221 1222222221       346899999999999999998887755443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01855 YqeH YqeH

Probab=98.95  E-value=9.5e-09  Score=75.39  Aligned_cols=94  Identities=22%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhC
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EEN  150 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~  150 (218)
                      .+..++..+++.+|++++|+|+.+...     .|...+... ..+.|+++|+||+|+.... ........+.     ...
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhc
Confidence            357788899999999999999988642     122222211 2468999999999996433 2223333333     223


Q ss_pred             CC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         151 DL---IFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       151 ~~---~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      +.   .++++||+++.|++++++.+.+.+
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            32   589999999999999999988766

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG2655|consensus

Probab=98.95  E-value=4.6e-08  Score=76.95  Aligned_cols=158  Identities=15%  Similarity=0.251  Sum_probs=93.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------   76 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------   76 (218)
                      ..+.++++|++|.|||||+|.|+...+...         ...+.........+.-++-.++++++||||..+        
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            458999999999999999999876543322         222344444444444467778999999999321        


Q ss_pred             ------hhhhhHhh-----------hc--cCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          77 ------FRAVTRSY-----------YR--GAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        77 ------~~~~~~~~-----------~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                            ..+....|           +.  ++|+++|.+..... -..-++ .+++.+.    ..+.+|-|..|+|.....
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~Mk~l~----~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFMKKLS----KKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHHHHHh----ccccccceeeccccCCHH
Confidence                  01111111           22  67889998886653 111222 2233333    356788889999986654


Q ss_pred             cccH--HHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         137 DVRY--DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       137 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      ++..  ..+.+-+...++.++.-.....   +..+....+.+.+.
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~  216 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSS  216 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhc
Confidence            4322  3355555667777665544433   44444445555554

>KOG3887|consensus

Probab=98.94  E-value=6.4e-09  Score=76.66  Aligned_cols=164  Identities=18%  Similarity=0.249  Sum_probs=97.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE--EECCeEEEEEEeeCcchhhhhh---hhHhhhccCC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII--EVHGEKIKLQIWDTAGQERFRA---VTRSYYRGAA   89 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d   89 (218)
                      ..+|+++|...+||||+.+.......+.   .|.-.+...+..  .+.+.-+.+.+||.||+-.+..   -....++++.
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            3569999999999999777664433222   122222212111  1223457899999999864322   2456788999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCCCc-cccH-----HHH-HHHHH----hCCCcEEE
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMDLEGSR-DVRY-----DEA-KKFAE----ENDLIFVE  156 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~-~~~~-----~~~-~~~~~----~~~~~~~~  156 (218)
                      ++|||+|+.+.- .+.+..+...+....  ++++.+-++..|.|-.... .+..     +.. ..++.    ...+.++-
T Consensus       104 ALifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L  182 (347)
T KOG3887|consen  104 ALIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL  182 (347)
T ss_pred             eEEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence            999999998752 222323222233222  3678889999999964321 1110     111 11221    12334566


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169         157 ASAMTGENVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       157 ~S~~~~~~i~~~~~~i~~~~~~~~~~~  183 (218)
                      +|.. .+.+-|+|..+++.+..+++.-
T Consensus       183 TSIy-DHSIfEAFSkvVQkLipqLptL  208 (347)
T KOG3887|consen  183 TSIY-DHSIFEAFSKVVQKLIPQLPTL  208 (347)
T ss_pred             eeec-chHHHHHHHHHHHHHhhhchhH
Confidence            6665 4569999999999998876654

>cd01859 MJ1464 MJ1464

Probab=98.92  E-value=9.1e-09  Score=73.04  Aligned_cols=95  Identities=14%  Similarity=0.061  Sum_probs=64.8

Q ss_pred             hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEE
Q psy1169          77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVE  156 (218)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  156 (218)
                      +..+.++.++++|++|+|+|+.++...+.. .+...+.   ..+.|+++|+||+|+......  .....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            355677888899999999999876443221 2222221   236899999999998533211  1111233345678999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q psy1169         157 ASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       157 ~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      +|++++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999988887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1486|consensus

Probab=98.86  E-value=2e-07  Score=69.31  Aligned_cols=89  Identities=25%  Similarity=0.189  Sum_probs=60.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-------hhHhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-------VTRSYY   85 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~   85 (218)
                      .--.+|+++|.|.+|||||+..+............++.+.-...+.+++..  +++.|.||..+-.+       ......
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEe
Confidence            345799999999999999999997655433333344444444455565554  55779999543222       223356


Q ss_pred             ccCCEEEEEEECCChhhH
Q psy1169          86 RGAAGALMVYDITRRSTY  103 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~  103 (218)
                      +.+|.+++|+|++..+.-
T Consensus       138 rtaDlilMvLDatk~e~q  155 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQ  155 (364)
T ss_pred             ecccEEEEEecCCcchhH
Confidence            789999999999886553

>KOG1547|consensus

Probab=98.84  E-value=1.4e-07  Score=69.59  Aligned_cols=157  Identities=18%  Similarity=0.245  Sum_probs=88.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh------
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER------   76 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------   76 (218)
                      ....++|+|+|.+|.|||||+|.+.......         ....|.........+.-.+-...+.++||||..+      
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            3467999999999999999999997543322         1223344444444444456677889999999321      


Q ss_pred             ------------hhhh--------hHhhhc--cCCEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          77 ------------FRAV--------TRSYYR--GAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        77 ------------~~~~--------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                                  +.+.        ....+.  +++.++|.+..+.. ++..+ ..+++.+..    -+.++-|..|.|-.
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTL  197 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecccc
Confidence                        1111        111122  45677777766542 11111 122332322    24467778899853


Q ss_pred             C--CccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169         134 G--SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus       134 ~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      .  .+....+.+++-...+++.+++-...+.+.=+..++.-+
T Consensus       198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kv  239 (336)
T KOG1547|consen  198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKV  239 (336)
T ss_pred             cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHH
Confidence            2  233333455666666888888766665554444444333

>PRK12289 GTPase RsgA; Reviewed

Probab=98.83  E-value=2.5e-08  Score=79.47  Aligned_cols=91  Identities=20%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             hhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEec
Q psy1169          80 VTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS  158 (218)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (218)
                      +.+..+.++|.+++|+|+.++. .+..+..|+..+..   .++|+++|+||+||......  ....+.....++.++.+|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            4455688999999999998765 45566677655532   57899999999999643221  222233345778899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy1169         159 AMTGENVEQAFLETAKK  175 (218)
Q Consensus       159 ~~~~~~i~~~~~~i~~~  175 (218)
                      |+++.|++++++.+...
T Consensus       157 A~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        157 VETGIGLEALLEQLRNK  173 (352)
T ss_pred             cCCCCCHHHHhhhhccc
Confidence            99999999999887654

>KOG0464|consensus

Probab=98.79  E-value=8.1e-09  Score=81.75  Aligned_cols=129  Identities=19%  Similarity=0.204  Sum_probs=99.0

Q ss_pred             ccccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCC--------CCC--------CCCCceeeeEEEEEEEECCeEEE
Q psy1169           2 KTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--------FMP--------DCPHTIGVEFGTRIIEVHGEKIK   65 (218)
Q Consensus         2 ~~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~   65 (218)
                      +++++..+++....-+|.|+..-.+||||.-.|++...        ...        ......+++.....+.++.+.+.
T Consensus        24 kslhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~r  103 (753)
T KOG0464|consen   24 KSLHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHR  103 (753)
T ss_pred             hhccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccce
Confidence            45556666777788899999999999999999997421        110        00112345555666677778888


Q ss_pred             EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      +.++||||+..|.-....+++-.|+++.|||.+....-+.+..|.+    ..+.++|-..++||+|...
T Consensus       104 inlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  104 INLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence            9999999999999999999999999999999999877777766653    3345799999999999744

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.79  E-value=4.2e-08  Score=76.46  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             HhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169          82 RSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.....  ......+....+.+++.+|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            34578999999999999987 88888888765553   4689999999999965421  112233334467889999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAK  174 (218)
Q Consensus       161 ~~~~i~~~~~~i~~  174 (218)
                      ++.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999998877654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2486|consensus

Probab=98.78  E-value=2.1e-08  Score=75.40  Aligned_cols=159  Identities=17%  Similarity=0.090  Sum_probs=93.8

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeEEEEEEEECCeEEEEEEeeCcc----------hhhh
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERF   77 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~   77 (218)
                      ..+....++++++|.+++|||+|++.+........... ..+.+.....+.+.   ..+.++|.||          ..++
T Consensus       130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~  206 (320)
T KOG2486|consen  130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADW  206 (320)
T ss_pred             cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchH
Confidence            44567789999999999999999999987655443333 33333333333322   3566789999          2245


Q ss_pred             hhhhHhhhccCC---EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc----ccHHHHHH-----
Q psy1169          78 RAVTRSYYRGAA---GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD----VRYDEAKK-----  145 (218)
Q Consensus        78 ~~~~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~-----  145 (218)
                      ..+...|+..-+   -+.+++|++-+-.--+.. .+..+.   ..++|..+|+||+|......    .....+..     
T Consensus       207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLG---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHhHHHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHh---hcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            555666654332   235566666542211111 122222   35899999999999742211    00011111     


Q ss_pred             --HHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169         146 --FAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus       146 --~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                        .+-...++.+.+|+.++.|+++++-.+.+
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehhh
Confidence              11123456778999999999988766654

>PRK12288 GTPase RsgA; Reviewed

Probab=98.76  E-value=9.8e-08  Score=76.08  Aligned_cols=88  Identities=15%  Similarity=0.143  Sum_probs=66.8

Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAEENDLIFVEASAMTGE  163 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~  163 (218)
                      ..++|.+++|++.....++..+..|+..+..   .++|+++|+||+|+...... ............+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4579999999999988999999999765542   46899999999999654321 1122223334567899999999999


Q ss_pred             CHHHHHHHHHHH
Q psy1169         164 NVEQAFLETAKK  175 (218)
Q Consensus       164 ~i~~~~~~i~~~  175 (218)
                      |++++++.+...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999888653

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.75  E-value=2.5e-08  Score=69.57  Aligned_cols=54  Identities=22%  Similarity=0.254  Sum_probs=36.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ   74 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (218)
                      +++++|.+|+|||||+|++++........ ..+.+.....+.+++   .+.||||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876543211 122222233344433   4689999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.74  E-value=5.9e-08  Score=76.05  Aligned_cols=86  Identities=17%  Similarity=0.137  Sum_probs=63.2

Q ss_pred             hhccCCEEEEEEECCChhhHHH-HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          84 YYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      .+.++|.+++|+|+.++..+.. +..|+..+..   .++|+++|+||+|+...... .....+.....+.+++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCC
Confidence            4589999999999988765444 4666655443   57899999999999633221 22334445556788999999999


Q ss_pred             CCHHHHHHHHH
Q psy1169         163 ENVEQAFLETA  173 (218)
Q Consensus       163 ~~i~~~~~~i~  173 (218)
                      .|++++++.+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999987664

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.70  E-value=1.5e-07  Score=75.76  Aligned_cols=95  Identities=24%  Similarity=0.289  Sum_probs=68.7

Q ss_pred             hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH----HHHh
Q psy1169          74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK----FAEE  149 (218)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~~  149 (218)
                      .+.|..+...+.+.++++++|+|+.+...     .|...+.... .+.|+++|+||+|+... ....+...+    ++..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            45788888889999999999999977542     2444444333 25789999999999643 232334333    3455


Q ss_pred             CCC---cEEEeccCCCCCHHHHHHHHHHH
Q psy1169         150 NDL---IFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       150 ~~~---~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      .++   .++.+||+++.|++++++.+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            665   38999999999999999888654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1954|consensus

Probab=98.70  E-value=1.9e-07  Score=73.02  Aligned_cols=127  Identities=14%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeEEEEEEE------ECCeE-----------------
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIE------VHGEK-----------------   63 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~-----------------   63 (218)
                      ..+......=|+++|.-..||||||+.|+...++..... ..+.++....+.      ++|..                 
T Consensus        51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~  130 (532)
T KOG1954|consen   51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN  130 (532)
T ss_pred             cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence            344455666799999999999999999999888754322 112222222111      11110                 


Q ss_pred             ----------------EEEEEeeCcchh-----------hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhh
Q psy1169          64 ----------------IKLQIWDTAGQE-----------RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL  116 (218)
Q Consensus        64 ----------------~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  116 (218)
                                      -.+.|+||||.-           .|.....=|..++|.+|++||....+--+++...+..+.. 
T Consensus       131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-  209 (532)
T KOG1954|consen  131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-  209 (532)
T ss_pred             HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-
Confidence                            256799999932           2445666688999999999998765544455554444443 


Q ss_pred             cCCCCeEEEEeeCCCCCCCcc
Q psy1169         117 TNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus       117 ~~~~~piivv~nK~Dl~~~~~  137 (218)
                        ..-.+-||+||.|+.+..+
T Consensus       210 --~EdkiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  210 --HEDKIRVVLNKADQVDTQQ  228 (532)
T ss_pred             --CcceeEEEeccccccCHHH
Confidence              4455788999999865543

>KOG0467|consensus

Probab=98.64  E-value=1.7e-07  Score=79.27  Aligned_cols=119  Identities=18%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCC------------CC--CCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF------------MP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ   74 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (218)
                      +.+.+..-+++++.....|||||+..|+...-            ..  +...+.+++.....+..-...+.+.++|+||+
T Consensus         3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh   82 (887)
T KOG0467|consen    3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH   82 (887)
T ss_pred             CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence            45667888999999999999999999974321            10  11123344444444444456788899999999


Q ss_pred             hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169          75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD  131 (218)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D  131 (218)
                      .+|.+......+-+|++++++|+...-.-+...-..+.+.    .+...++|+||+|
T Consensus        83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid  135 (887)
T KOG0467|consen   83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID  135 (887)
T ss_pred             cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence            9999999999999999999999988755444332222222    3455789999999

>TIGR00092 GTP-binding protein YchF

Probab=98.62  E-value=1.9e-07  Score=74.35  Aligned_cols=84  Identities=18%  Similarity=0.060  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhh---
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQER---   76 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~---   76 (218)
                      +++.|+|.|++|||||++.|..... .....+..+.+.....+.+++.               ...+.+.|+||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999988776 4443344444444555555442               23678899999543   


Q ss_pred             ----hhhhhHhhhccCCEEEEEEECCC
Q psy1169          77 ----FRAVTRSYYRGAAGALMVYDITR   99 (218)
Q Consensus        77 ----~~~~~~~~~~~~d~~i~v~d~~~   99 (218)
                          .....-..++.+|++++|++..+
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                22233445789999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01856 YlqF YlqF

Probab=98.62  E-value=1.2e-07  Score=68.37  Aligned_cols=58  Identities=24%  Similarity=0.348  Sum_probs=39.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ   74 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (218)
                      +..++++++|.+|+|||||++++.+..+... ....+.+.....+.++   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4558999999999999999999998765322 2222333334444443   35679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01858 NGP_1 NGP-1

Probab=98.60  E-value=1.7e-07  Score=66.55  Aligned_cols=56  Identities=20%  Similarity=0.202  Sum_probs=35.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999875542221 1222222222222221   356899998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.59  E-value=1.6e-07  Score=67.61  Aligned_cols=57  Identities=21%  Similarity=0.282  Sum_probs=38.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ...++++|+|.+++|||||+|+|.+....... +..+.+.....+..+   ..+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence            34589999999999999999999976543221 122333323333332   2577999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.57  E-value=1.4e-06  Score=68.66  Aligned_cols=155  Identities=14%  Similarity=0.115  Sum_probs=92.5

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------CceeeeEEEEEEEECC--------------
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP--------------HTIGVEFGTRIIEVHG--------------   61 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--------------   61 (218)
                      ...+..+.+.+.|....|||||.-.|..+.......              ...+.+.+...+-+++              
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE  191 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE  191 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence            334667899999999999999987775443222111              1112222222222211              


Q ss_pred             -------eEEEEEEeeCcchhhhhhh--hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          62 -------EKIKLQIWDTAGQERFRAV--TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        62 -------~~~~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                             .+--+.|+|+.|++.|...  ...+-.+.|..++++.+++..+--.-+.    +.....-..|++++.||+|+
T Consensus       192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH----Lgi~~a~~lPviVvvTK~D~  267 (527)
T COG5258         192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH----LGIALAMELPVIVVVTKIDM  267 (527)
T ss_pred             HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh----hhhhhhhcCCEEEEEEeccc
Confidence                   1235569999999998763  3334468899999999999755322222    12222247999999999999


Q ss_pred             CCCcccc--HHHHHHH----------------------H-HhC--CCcEEEeccCCCCCHHHH
Q psy1169         133 EGSRDVR--YDEAKKF----------------------A-EEN--DLIFVEASAMTGENVEQA  168 (218)
Q Consensus       133 ~~~~~~~--~~~~~~~----------------------~-~~~--~~~~~~~S~~~~~~i~~~  168 (218)
                      ..+....  .+++..+                      + ...  =.|+|.+|+.+++|++-+
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL  330 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL  330 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence            6442111  0111111                      1 111  247999999999999643

>KOG1491|consensus

Probab=98.55  E-value=3.7e-07  Score=70.67  Aligned_cols=87  Identities=21%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC---------------eEEEEEEeeCcchhh-
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG---------------EKIKLQIWDTAGQER-   76 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~-   76 (218)
                      .+.+++.|+|.|++|||||+|.|..........|..+++.....+.+..               ....+.++|++|... 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            4668999999999999999999999888877777777766555554432               245888999999432 


Q ss_pred             ------hhhhhHhhhccCCEEEEEEECCC
Q psy1169          77 ------FRAVTRSYYRGAAGALMVYDITR   99 (218)
Q Consensus        77 ------~~~~~~~~~~~~d~~i~v~d~~~   99 (218)
                            .....-..++.+|+++-|+++..
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEecC
Confidence                  22233345678999999888654

>cd01859 MJ1464 MJ1464

Probab=98.55  E-value=2.8e-07  Score=65.34  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=37.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ...+++++|.+++|||||++++.+... ....++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            457899999999999999999986542 22333444433233222222   578999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.54  E-value=8.8e-07  Score=81.22  Aligned_cols=114  Identities=20%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC----CCc--eeeeEEEEEEEECCeEEEEEEeeCcchh--------hhhhhhH
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDC----PHT--IGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTR   82 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~   82 (218)
                      =.+|+|++|+||||++.+- +..++-..    ..+  .+.+... .+.+.+   +-.++|++|..        .....|.
T Consensus       113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~  187 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-DWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWL  187 (1169)
T ss_pred             CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-ceEecC---CEEEEcCCCccccCCCcccccHHHHH
Confidence            3689999999999999877 33332110    000  0000000 111111   34488999932        1112233


Q ss_pred             hhh---------ccCCEEEEEEECCChhh---------HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          83 SYY---------RGAAGALMVYDITRRST---------YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        83 ~~~---------~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      .++         +..+++|+++|+.+--.         -..++..+.++....+...||+|++||+|+...
T Consensus       188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            332         35799999999876321         134455666777777789999999999998644

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=2.9e-06  Score=70.09  Aligned_cols=141  Identities=14%  Similarity=0.142  Sum_probs=83.2

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      ...-+..+=++|+||+|+||||||+.|...-.........+    ..+ .+.+..-.+++.++|.  ...++. ...+-+
T Consensus        63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl~~mi-DvaKIa  134 (1077)
T COG5192          63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DLHQMI-DVAKIA  134 (1077)
T ss_pred             cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HHHHHH-hHHHhh
Confidence            33445667788999999999999998865321111110100    111 2355666788899983  333332 234568


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccccHHHHHH------HHHh-CCCcEEEeccC
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKK------FAEE-NDLIFVEASAM  160 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~------~~~~-~~~~~~~~S~~  160 (218)
                      |.+++++|.+-.-..+.+ +++..+..+   +.| ++-|+|+.|+....... ..++.      |... .++.+|.+|..
T Consensus       135 DLVlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stL-r~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         135 DLVLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTL-RSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             heeEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHH-HHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            999999999876444333 344434433   455 77789999996543322 22222      2222 46778888876


Q ss_pred             CC
Q psy1169         161 TG  162 (218)
Q Consensus       161 ~~  162 (218)
                      .+
T Consensus       210 ~n  211 (1077)
T COG5192         210 EN  211 (1077)
T ss_pred             cc
Confidence            54

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.53  E-value=7.3e-07  Score=63.36  Aligned_cols=64  Identities=14%  Similarity=0.106  Sum_probs=37.7

Q ss_pred             EEEEEEeeCcchhhhhhhhHh--------hhccCCEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          63 KIKLQIWDTAGQERFRAVTRS--------YYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      ..+..++|++|......+...        ..-.++.+++++|+..-... .....+..++....      ++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence            346678999996543333222        23357889999997653321 12223344444322      778999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0463|consensus

Probab=98.52  E-value=3.5e-07  Score=71.81  Aligned_cols=157  Identities=15%  Similarity=0.191  Sum_probs=87.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CCCCc-------eeeeEEEEEEE------------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP----------------DCPHT-------IGVEFGTRIIE------------   58 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~----------------~~~~~-------~~~~~~~~~~~------------   58 (218)
                      ..++|+|+|...+|||||+-.|.+++...                +...+       .+++..-..+.            
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            45899999999999999997665443221                11111       11111111111            


Q ss_pred             --ECCeEEEEEEeeCcchhhhhhhhH--hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          59 --VHGEKIKLQIWDTAGQERFRAVTR--SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        59 --~~~~~~~~~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                        .++..-.++|+|.+|++.|....-  ..-+-.|..++++-++-.--- ..++   .+.....-.+|+++|.+|+|+..
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiG-mTKE---HLgLALaL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIG-MTKE---HLGLALALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccccee-ccHH---hhhhhhhhcCcEEEEEEeeccCc
Confidence              112223567999999998876322  222345777777776653110 0011   11222224799999999999965


Q ss_pred             CccccHHHHH---HH--------------------------HHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         135 SRDVRYDEAK---KF--------------------------AEENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       135 ~~~~~~~~~~---~~--------------------------~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ...+. +-++   .+                          ..+.-+|+|.+|..+|.|++ ++..+++.+
T Consensus       288 ANiLq-EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll  356 (641)
T KOG0463|consen  288 ANILQ-ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL  356 (641)
T ss_pred             HHHHH-HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence            54321 2111   11                          12223568999999999996 344444444

>cd01855 YqeH YqeH

Probab=98.51  E-value=2.4e-07  Score=67.99  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ..+++++|.+|+|||||+|+|+......       ......+++.....+..+.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            3589999999999999999998754311       1111222333333333332   468999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.51  E-value=7.2e-07  Score=63.34  Aligned_cols=89  Identities=16%  Similarity=0.095  Sum_probs=57.5

Q ss_pred             hhhccCCEEEEEEECCChhh--HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169          83 SYYRGAAGALMVYDITRRST--YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      ..++.+|++++|+|+.++..  ...+..++.   . ...+.|+++|+||+|+...... ......+........+.+||+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            35678999999999998633  223333332   2 2345899999999999643221 112222222232335789999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAKKI  176 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~  176 (218)
                      .+.|++++++.+.+..
T Consensus        79 ~~~~~~~L~~~l~~~~   94 (157)
T cd01858          79 NPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999988887654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0448|consensus

Probab=98.50  E-value=5.6e-06  Score=69.65  Aligned_cols=145  Identities=18%  Similarity=0.204  Sum_probs=88.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCceee----------------------------------------
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGV----------------------------------------   50 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~~~~----------------------------------------   50 (218)
                      .+...||+|.|...+||||++|.++....-++ ..+++.+                                        
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            35568999999999999999999986543221 1111000                                        


Q ss_pred             --eEEEEEEEECCe-----EEEEEEeeCcchh---hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCC
Q psy1169          51 --EFGTRIIEVHGE-----KIKLQIWDTAGQE---RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN  120 (218)
Q Consensus        51 --~~~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  120 (218)
                        ......+.++..     .-.+.++|.||.+   ...+-...+...+|++|||..+.+..+..+. .++.....   ..
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~K  261 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EK  261 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cC
Confidence              001111112211     1145688999954   4556677788899999999999887664333 44444443   23


Q ss_pred             CeEEEEeeCCCCCCCccccHHHHHHHHHhCC--------CcEEEeccC
Q psy1169         121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--------LIFVEASAM  160 (218)
Q Consensus       121 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~S~~  160 (218)
                      ..|+|+.||+|.....+.-.+++..-.+...        -.+++||++
T Consensus       262 pniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  262 PNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             CcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            4477788999986665444444444433221        237888865

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.49  E-value=8.8e-07  Score=62.77  Aligned_cols=85  Identities=16%  Similarity=0.058  Sum_probs=55.4

Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |++|+|+|+.++.+....  ++.. ......+.|+++|+||+|+.....+ .+....+.......++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            689999999887654322  2221 1222357899999999999543211 01112232233456899999999999999


Q ss_pred             HHHHHHHHH
Q psy1169         169 FLETAKKIY  177 (218)
Q Consensus       169 ~~~i~~~~~  177 (218)
                      ++.+.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            998877653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.48  E-value=2.9e-05  Score=54.22  Aligned_cols=147  Identities=18%  Similarity=0.190  Sum_probs=78.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCc-ch-----------------
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA-GQ-----------------   74 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~-----------------   74 (218)
                      ...+||.|.|+||+||||++.++.+.--...   ..-.-+.+..+.-++...-|.|+|+. |.                 
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            4678999999999999999998864221111   11112224444456666777777776 31                 


Q ss_pred             ----hhhhh----hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHH
Q psy1169          75 ----ERFRA----VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF  146 (218)
Q Consensus        75 ----~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~  146 (218)
                          +.+..    .....++.+|++  ++|--.+-.+ ....+...+....+.+.|++.++.+.+-  +     -.++.+
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr--~-----P~v~~i  149 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR--H-----PLVQRI  149 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC--C-----hHHHHh
Confidence                11221    222334445654  4454333221 1133445555555678888888877653  1     122222


Q ss_pred             HHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         147 AEENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       147 ~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      -....+ ++.   .+..|-+.+++.+++.+
T Consensus       150 k~~~~v-~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         150 KKLGGV-YVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             hhcCCE-EEE---EccchhhHHHHHHHHHh
Confidence            222333 333   44455557777776655

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.47  E-value=5.3e-07  Score=70.02  Aligned_cols=58  Identities=28%  Similarity=0.405  Sum_probs=38.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ   74 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (218)
                      ...++++|+|.+|+|||||+|+|.+....... ...+.+.....+.+..   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            35689999999999999999999876533221 1222222233343332   4679999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.45  E-value=8.1e-07  Score=69.35  Aligned_cols=59  Identities=27%  Similarity=0.371  Sum_probs=39.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ...++++|+|.+|+|||||+|+|.+...... ....+.+.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            4568999999999999999999998654322 11223332233333332   46799999964

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.44  E-value=4.2e-07  Score=64.12  Aligned_cols=60  Identities=20%  Similarity=0.247  Sum_probs=32.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMP------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      --++++|++|||||||+|.|+......      ........+.....+..+..   ..++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            358999999999999999998753211      11111111112333333332   2478999976544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01856 YlqF YlqF

Probab=98.44  E-value=1.9e-06  Score=62.09  Aligned_cols=98  Identities=14%  Similarity=0.079  Sum_probs=62.9

Q ss_pred             Ccchh-hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169          71 TAGQE-RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE  149 (218)
Q Consensus        71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  149 (218)
                      .||+- +........+..+|++++|+|+.++...... .+...+     .+.|+++|+||+|+......  ....++...
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHh
Confidence            35543 2333456678899999999999876442211 122111     24789999999999533211  111122233


Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         150 NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ....++.+|++++.|++++.+.+.+.+
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence            345688999999999999998888765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.41  E-value=6.2e-07  Score=70.95  Aligned_cols=58  Identities=22%  Similarity=0.333  Sum_probs=41.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ..++++|+|.+++|||||||+|.+.... ...+..+.+.....+.....   +.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            4578999999999999999999987652 22233355544555544433   6789999954

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.40  E-value=1.5e-06  Score=60.62  Aligned_cols=78  Identities=14%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             hHhhhccCCEEEEEEECCChhhHH--HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEec
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS  158 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (218)
                      ....+..+|++++|+|+.++.+.+  .+..|+...   . .+.|+++++||+|+.....  .....++....+..++++|
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS   78 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS   78 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence            345678899999999998876543  344444322   1 4689999999999854332  1233444555567889999


Q ss_pred             cCCCCC
Q psy1169         159 AMTGEN  164 (218)
Q Consensus       159 ~~~~~~  164 (218)
                      +.++.+
T Consensus        79 a~~~~~   84 (141)
T cd01857          79 ALKENA   84 (141)
T ss_pred             ecCCCc
Confidence            997754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1143|consensus

Probab=98.38  E-value=1.4e-06  Score=68.55  Aligned_cols=150  Identities=19%  Similarity=0.268  Sum_probs=89.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------------------CceeeeEEEEEEEEC----------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-----------------------HTIGVEFGTRIIEVH----------   60 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~----------   60 (218)
                      -.++++|+|...+|||||+-.|..+.......                       ...+++.....+.+.          
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            35899999999999999998776543322111                       112222222222221          


Q ss_pred             CeEEEEEEeeCcchhhhhhhhHhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          61 GEKIKLQIWDTAGQERFRAVTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      ...--+.++|.+|+..|.......+.  ..|..++++++...-.+..-+.    +.....-++|++++.+|+|+.....+
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH----Lgl~~AL~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH----LGLIAALNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH----HHHHHHhCCCeEEEEEeeccccchhH
Confidence            11235679999999888764433332  3577888888887655432222    12222247999999999999654211


Q ss_pred             ------------------------cHHHH----HHHHHhCCCcEEEeccCCCCCHHH
Q psy1169         139 ------------------------RYDEA----KKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus       139 ------------------------~~~~~----~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                                              ..+++    ++++..+-.|+|-+|...|.+++-
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l  378 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL  378 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence                                    11122    222223345789999999999864

>KOG0460|consensus

Probab=98.38  E-value=4.3e-06  Score=64.98  Aligned_cols=144  Identities=18%  Similarity=0.154  Sum_probs=92.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC----------CCCC----CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ----------KFMP----DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      ..-.+|.-+|...-|||||-..+..-          .|.+    ......+++...-++.++-..-.+-=.|+||+.+|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            34588999999999999998877521          1110    011234455555666665444455567999999887


Q ss_pred             hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhCC---
Q psy1169          79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEND---  151 (218)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~---  151 (218)
                      ..-..-....|+.|+|+.++|..-.|.-+.++.    ...-+++ +++++||.|+.++.+..   .-+++++...++   
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLL----ArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLL----ARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchHHHHHH----HHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            655555667899999999999765554444331    1222344 78889999998554322   234566666654   


Q ss_pred             --CcEEEeccC
Q psy1169         152 --LIFVEASAM  160 (218)
Q Consensus       152 --~~~~~~S~~  160 (218)
                        .|++.-||+
T Consensus       208 d~~PvI~GSAL  218 (449)
T KOG0460|consen  208 DNTPVIRGSAL  218 (449)
T ss_pred             CCCCeeecchh
Confidence              467776654

>KOG0447|consensus

Probab=98.37  E-value=3e-05  Score=64.09  Aligned_cols=135  Identities=14%  Similarity=0.259  Sum_probs=83.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCC------------------------------c-------------
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPH------------------------------T-------------   47 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~------------------------------~-------------   47 (218)
                      .++..+|+|+|+..+||||.+..+..-...+ ....                              |             
T Consensus       305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            3778999999999999999999885322111 0000                              0             


Q ss_pred             ----------eeeeEEEEEEEECCeE-EEEEEeeCcch-------------hhhhhhhHhhhccCCEEEEEEECCChhhH
Q psy1169          48 ----------IGVEFGTRIIEVHGEK-IKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRRSTY  103 (218)
Q Consensus        48 ----------~~~~~~~~~~~~~~~~-~~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~  103 (218)
                                .++...+..+.+.|.. ....++|.||.             +...++...|..+.+++|+|+--..-...
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE  464 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE  464 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence                      0111112222333322 36678999993             23455788899999999999754332221


Q ss_pred             -HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169         104 -NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE  149 (218)
Q Consensus       104 -~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  149 (218)
                       ..+..+...+.   ..+...|+|+||.|+.+..-.+...+++....
T Consensus       465 RSnVTDLVsq~D---P~GrRTIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  465 RSIVTDLVSQMD---PHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             hhhHHHHHHhcC---CCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence             12233333333   24667899999999988766666777776654

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.36  E-value=9.5e-06  Score=61.04  Aligned_cols=89  Identities=16%  Similarity=0.055  Sum_probs=53.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCceeeeEEEEEEEEC---CeEEEEEEeeCcchhhhh------hhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVH---GEKIKLQIWDTAGQERFR------AVT   81 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~------~~~   81 (218)
                      .+..-|.|+|++++|||+|+|.|++.  .+...... ...+...+....+   +....+.++||+|.....      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-CCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            45677999999999999999999987  55432211 1111112222111   235688999999965321      112


Q ss_pred             Hhhhcc--CCEEEEEEECCChhh
Q psy1169          82 RSYYRG--AAGALMVYDITRRST  102 (218)
Q Consensus        82 ~~~~~~--~d~~i~v~d~~~~~s  102 (218)
                      ...+..  ++.+||..+....+.
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~  106 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGD  106 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHH
Confidence            222333  788888777665433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0465|consensus

Probab=98.35  E-value=1.6e-06  Score=71.97  Aligned_cols=122  Identities=19%  Similarity=0.161  Sum_probs=85.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCC-----CCCC-----------CceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-----PDCP-----------HTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ....-+|.++-.-.+||||+-++.+...-.     ....           ...+++.......+....+.+.|+||||+.
T Consensus        36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv  115 (721)
T KOG0465|consen   36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV  115 (721)
T ss_pred             hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence            345567888889999999999998743211     1000           011222222223334457889999999999


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      .|.-.....++-.|+.+++++......-+...-|.+.-.    .++|-+.++||.|......
T Consensus       116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa~~  173 (721)
T KOG0465|consen  116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDRMGASP  173 (721)
T ss_pred             eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhhcCCCh
Confidence            998888889999999999999988766566666654333    5899999999999865543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.33  E-value=1.1e-06  Score=70.05  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=34.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCC------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFMP------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      ++|+|.+|||||||+|+|+......      .......++.....+.++++.   .++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            7899999999999999998654221      111111112222233333322   388999976654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.33  E-value=6.5e-06  Score=65.02  Aligned_cols=95  Identities=19%  Similarity=0.187  Sum_probs=55.0

Q ss_pred             eEEEEEEeeCcchhhh--------hhhhHh---h-hccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEee
Q psy1169          62 EKIKLQIWDTAGQERF--------RAVTRS---Y-YRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGN  128 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~--------~~~~~~---~-~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~n  128 (218)
                      ..+.+.|+||+|....        ..+...   . -...+..++|+|++... .+..+..+...       -.+.-+|+|
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~-------~~~~giIlT  267 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEA-------VGLTGIILT  267 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhh-------CCCCEEEEE
Confidence            3467889999995421        111111   1 12467789999998642 22322222211       123478899


Q ss_pred             CCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169         129 KMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      |.|....-    -.+...+...++|+..++  +|.+++++-
T Consensus       268 KlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        268 KLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            99954322    334455566799988888  666676654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.31  E-value=1.8e-06  Score=61.17  Aligned_cols=56  Identities=18%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ....+++++|.+|+|||||+|.+++..... ...+..+...  ..+..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence            456889999999999999999998755322 2222222221  222222   3577899998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.30  E-value=7.3e-06  Score=63.68  Aligned_cols=101  Identities=16%  Similarity=0.115  Sum_probs=65.3

Q ss_pred             Ccchh-hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169          71 TAGQE-RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE  149 (218)
Q Consensus        71 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  149 (218)
                      .|||. .........+..+|++|+|+|+..+.+.... .+.+.+     .+.|+++|+||+|+......  ....++...
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHH
Confidence            46654 2333456678899999999999876443221 111111     25789999999998533211  111122233


Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         150 NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      .+.+++.+|++++.|++++.+.+.+.+.+.
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            455789999999999999998887776543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=98.29  E-value=6.9e-05  Score=53.03  Aligned_cols=152  Identities=9%  Similarity=0.073  Sum_probs=106.5

Q ss_pred             CccccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh
Q psy1169           1 MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV   80 (218)
Q Consensus         1 ~~~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (218)
                      |.-..+..+.|..+...|+++|..+.++..|.+.++...-      +    +..+...-..      + -.|.  +    
T Consensus         1 m~~L~p~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~l~Vh~a~s------L-PLp~--e----   57 (176)
T PF11111_consen    1 MSVLRPFDKLPELNTATILLVGTEEALLQQLAEAMLEEDK------E----FKLKVHLAKS------L-PLPS--E----   57 (176)
T ss_pred             CCcccccccCCCcceeEEEEecccHHHHHHHHHHHHhhcc------c----eeEEEEEecc------C-CCcc--c----
Confidence            5667788888999999999999999999999999976221      0    0011110000      0 0111  1    


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      ....-.+.|.++|++|.....+++.++.-+..+....=. -.+.++++-....+...+...++.+++..++.|++.+.-.
T Consensus        58 ~~~lRprIDlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le  136 (176)
T PF11111_consen   58 NNNLRPRIDLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLE  136 (176)
T ss_pred             ccCCCceeEEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecc
Confidence            111235689999999999999999998877666543312 2356666666666667788899999999999999998888


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAKKI  176 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~  176 (218)
                      ...+...+-..+++.+
T Consensus       137 ~~~~~~~lAqRLL~~l  152 (176)
T PF11111_consen  137 NEEGRTSLAQRLLRML  152 (176)
T ss_pred             cchHHHHHHHHHHHHH
Confidence            8877776666666554

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.29  E-value=1.9e-05  Score=61.08  Aligned_cols=94  Identities=18%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             EEEEEEeeCcchhhhhhh----hH---hhh-----ccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeC
Q psy1169          63 KIKLQIWDTAGQERFRAV----TR---SYY-----RGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNK  129 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~----~~---~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK  129 (218)
                      .+.+.|+||+|.......    ..   ...     ...|..++|+|+... +.+..+..+.+.+       .+.-+|+||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-------~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-------GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-------CCCEEEEEc
Confidence            467889999996532221    11   111     237889999999754 2233332222211       135788999


Q ss_pred             CCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169         130 MDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      .|.....    -.+..+....++|+.+++  +|.+++++-
T Consensus       227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            9974432    233444445678988887  566666554

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.26  E-value=3e-05  Score=61.17  Aligned_cols=97  Identities=12%  Similarity=0.100  Sum_probs=57.1

Q ss_pred             EEEEEeeCcchhhhhhhhHhhhc--------cCCEEEEEEECCChhhHHH-H-HHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYR--------GAAGALMVYDITRRSTYNH-L-SSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~-~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      +...++++.|..........+..        ..|++|-|+|+..-..... . ..+..++....      +|++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCC
Confidence            45568888886655443333322        4577899999987544222 2 22334444322      8999999998


Q ss_pred             CCccccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHH
Q psy1169         134 GSRDVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       134 ~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~  169 (218)
                      +...  .+..++..+.  ..++++.++. .+....+++
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            7664  2344444444  5667888887 333444333

>PRK14974 cell division protein FtsY; Provisional

Probab=98.24  E-value=9e-06  Score=64.52  Aligned_cols=93  Identities=15%  Similarity=0.094  Sum_probs=54.0

Q ss_pred             EEEEEeeCcchhhhhh----hhHhhh--ccCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          64 IKLQIWDTAGQERFRA----VTRSYY--RGAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      +.+.|+||+|......    ....+.  -..|..++|+|+..... .+.+..+..    ..   .+--+++||.|....-
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~----~~---~~~giIlTKlD~~~~~  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE----AV---GIDGVILTKVDADAKG  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh----cC---CCCEEEEeeecCCCCc
Confidence            5688999999643111    111221  25688899999876432 222222221    11   1246889999975332


Q ss_pred             cccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169         137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                          -.+..++...++|+..++  +|.+++++.
T Consensus       296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        296 ----GAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             ----cHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence                233344445688988887  677787665

>PRK13796 GTPase YqeH; Provisional

Probab=98.23  E-value=1.5e-05  Score=64.33  Aligned_cols=93  Identities=26%  Similarity=0.330  Sum_probs=60.2

Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHH----HHhCC
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF----AEEND  151 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~  151 (218)
                      .|...........+.+++|+|+.+...     .|...+.... .+.|+++|+||.|+... ....+.+..+    +...+
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g  130 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG  130 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence            455544444333348899999988542     2333444333 26789999999999643 2222333333    44455


Q ss_pred             C---cEEEeccCCCCCHHHHHHHHHHH
Q psy1169         152 L---IFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       152 ~---~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      +   .++.+||+++.|++++++.+.+.
T Consensus       131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        131 LRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            5   47899999999999999888654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.22  E-value=9.2e-05  Score=59.64  Aligned_cols=143  Identities=17%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-----------------CCCCCCC----ceeeeEE---EEEEEE-CCeEEEEEEe
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQK-----------------FMPDCPH----TIGVEFG---TRIIEV-HGEKIKLQIW   69 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~-----------------~~~~~~~----~~~~~~~---~~~~~~-~~~~~~~~i~   69 (218)
                      -+=+.|+||..+||||||+||...-                 .+.+...    |+...+-   ...+.+ ++..+.+.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            4668999999999999999996421                 1111111    1111111   112223 4667889999


Q ss_pred             eCcchh-------------h------------hhhhhHh-----hhc-cCCEEEEEEECCC----hhhHHHHHHHHHHHh
Q psy1169          70 DTAGQE-------------R------------FRAVTRS-----YYR-GAAGALMVYDITR----RSTYNHLSSWLTDTK  114 (218)
Q Consensus        70 D~~G~~-------------~------------~~~~~~~-----~~~-~~d~~i~v~d~~~----~~s~~~~~~~~~~~~  114 (218)
                      |+.|..             +            |.....-     .-. ..-++++.-|-+=    ++.+..++.  +.+.
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe--rvI~  174 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEE--RVIE  174 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHH--HHHH
Confidence            998810             0            1110000     011 2234555555432    344444433  1233


Q ss_pred             hhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169         115 NLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT  161 (218)
Q Consensus       115 ~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (218)
                      .+..-+.|+++++|-.+-  ..+-..+.+.++...++++++++++.+
T Consensus       175 ELk~igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  175 ELKEIGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             HHHHhCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence            333357999999998874  233344667777888999998888754

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0466|consensus

Probab=98.22  E-value=1.6e-06  Score=66.36  Aligned_cols=163  Identities=18%  Similarity=0.199  Sum_probs=96.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCceee--eEEEE-EEE--------------------------E
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPHTIGV--EFGTR-IIE--------------------------V   59 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~---~~~~~~~~~~~--~~~~~-~~~--------------------------~   59 (218)
                      ++-.++|.-+|....||||++..+.+-.   |..+..+.++.  -|... .+.                          .
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            5678999999999999999998875421   11111111111  00000 000                          0


Q ss_pred             CCe------EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          60 HGE------KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        60 ~~~------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      .+.      .-.+.|+|+||++-.-...-+-..-.|++++++..+..-...+..+-+-.+...  .=..++++-||.|+.
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli  192 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLI  192 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhh
Confidence            010      125669999999865443333334467777777766532111111111112111  124478899999997


Q ss_pred             CCccc--cHHHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         134 GSRDV--RYDEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       134 ~~~~~--~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ...+.  ..+.+..|.+.   .+.|++++||.-..|++.+.+.|++.+
T Consensus       193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            54332  23556667665   467899999999999999998888877

>PRK01889 GTPase RsgA; Reviewed

Probab=98.21  E-value=1.1e-05  Score=64.78  Aligned_cols=84  Identities=12%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      ..++|.+++|+++...-....+..++..+..   .+++.++|+||+||........+....+  ..+.+++.+|++++.|
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            5789999999999765555556666554443   4577789999999965421111222222  3567899999999999


Q ss_pred             HHHHHHHHH
Q psy1169         165 VEQAFLETA  173 (218)
Q Consensus       165 i~~~~~~i~  173 (218)
                      ++++..++.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            998887664

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.20  E-value=2.9e-06  Score=64.69  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++++|++|||||||+|+|+...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            68999999999999999998653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=9.3e-06  Score=73.26  Aligned_cols=116  Identities=22%  Similarity=0.210  Sum_probs=64.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh--------hhhhhhHhh---
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTRSY---   84 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~---   84 (218)
                      .+|||++|+||||++..- +..|+  ............+..+.. .-.-.-.++||.|..        .-...|..+   
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            589999999999988543 11111  111100000000111111 011244578998832        111223322   


Q ss_pred             ------hccCCEEEEEEECCChhh---------HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          85 ------YRGAAGALMVYDITRRST---------YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        85 ------~~~~d~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                            .+..+++|+.+|+.+.-+         -..+..-++++........|+++++||.|+...
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence                  356799999999877322         122333455666666678999999999998654

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.18  E-value=2.7e-06  Score=65.56  Aligned_cols=59  Identities=20%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC------CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ------KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      -.+++|.+|||||||+|+|...      ..+........++.....+..+++.   .|+||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            4689999999999999999752      2222222222233334455554222   377999976544

>KOG4273|consensus

Probab=98.17  E-value=2.8e-05  Score=58.12  Aligned_cols=111  Identities=24%  Similarity=0.351  Sum_probs=67.6

Q ss_pred             eEEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeE----EEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          16 FKYIIIGDMGV--GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK----IKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        16 ~ki~v~G~~g~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .-++|+|-+|+  ||-+|+.+|....+..+..+.....+..+.+  +.+.    +.+.|.-..  +++..-.........
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwti--d~kyysadi~lcishic--de~~lpn~~~a~pl~   80 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTI--DNKYYSADINLCISHIC--DEKFLPNAEIAEPLQ   80 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEe--cceeeecceeEEeeccc--chhccCCccccccee
Confidence            45789999999  9999999998877766554444444433333  3222    233322221  111111222334567


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      +++++||++....+..+..|+.......  --.++.++||.|.
T Consensus        81 a~vmvfdlse~s~l~alqdwl~htdins--fdillcignkvdr  121 (418)
T KOG4273|consen   81 AFVMVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDR  121 (418)
T ss_pred             eEEEEEeccchhhhHHHHhhcccccccc--chhheeccccccc
Confidence            8899999999999999999975332211  1124566899985

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.16  E-value=1.6e-05  Score=62.08  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             Ccchhh-hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169          71 TAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE  149 (218)
Q Consensus        71 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  149 (218)
                      .|||.. -.......+..+|++|+|+|+.++.+...  .++....    .+.|+++|+||+|+.....  .....++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            577652 23345667889999999999987644322  1111111    2578999999999853211  1122222233


Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         150 NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      .+.+++.+|+.++.|++++++.+.+.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            456789999999999999998887776543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.16  E-value=3.2e-06  Score=61.85  Aligned_cols=44  Identities=16%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             ccccHHHHHHHHHhCCCcEE--EeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         136 RDVRYDEAKKFAEENDLIFV--EASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~--~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      .......+++++....+.+|  +|||++.+-+.++++.+.+.+.+-
T Consensus       141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            33444667778877777777  599999999999999888877553

>PRK12289 GTPase RsgA; Reviewed

Probab=98.15  E-value=4.1e-06  Score=66.96  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++|+|++|||||||||.|+...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcc
Confidence            7999999999999999998643

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.15  E-value=8.9e-06  Score=58.30  Aligned_cols=135  Identities=21%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeC-cch---------------------
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT-AGQ---------------------   74 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~---------------------   74 (218)
                      ||++.|++|+|||||+++++..--... .+..+  +.+..+.-++..+-|.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC-Cccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            689999999999999999874321100 01111  22333333455555666665 221                     


Q ss_pred             -hhhhhh----hHhhhccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCC-CCCCCccccHHHHHHHH
Q psy1169          75 -ERFRAV----TRSYYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKM-DLEGSRDVRYDEAKKFA  147 (218)
Q Consensus        75 -~~~~~~----~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~-Dl~~~~~~~~~~~~~~~  147 (218)
                       +.|...    ....+..+|  ++++|--.+ |-.  ...|.+.+......+.|++.++.+. +.        ....++.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~--~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK--SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC---CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc--CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence             112211    111123344  777774332 211  1234444444444678888888766 32        2345566


Q ss_pred             HhCCCcEEEeccCCCCCHH
Q psy1169         148 EENDLIFVEASAMTGENVE  166 (218)
Q Consensus       148 ~~~~~~~~~~S~~~~~~i~  166 (218)
                      ...+..+++++..+.+.+.
T Consensus       146 ~~~~~~i~~vt~~NRd~l~  164 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDALP  164 (168)
T ss_dssp             TTTTSEEEE--TTTCCCHH
T ss_pred             hCCCcEEEEeChhHHhhHh
Confidence            6778889999887776553

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0085|consensus

Probab=98.13  E-value=7e-06  Score=60.59  Aligned_cols=118  Identities=17%  Similarity=0.192  Sum_probs=73.9

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh----------HHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST----------YNHLSSWLTDTKNLT-NPNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~piivv~nK~  130 (218)
                      ..+.+.+.|.+|+..-+..|.+++.++..++|++.++.-..          .++-.-++..+..+. =.+.++|+++||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            45567788999988777778888888877777666544211          111122222222221 0378899999999


Q ss_pred             CCCCC----------------ccccHHHHHHHHHh----CC------CcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         131 DLEGS----------------RDVRYDEAKKFAEE----ND------LIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       131 Dl~~~----------------~~~~~~~~~~~~~~----~~------~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      |+.+.                ...+.+.++.|...    .+      +.-..+.|.+..|+.-+|..+-+.+++.
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            98432                12333445555432    11      1234688888999999999988888775

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.10  E-value=6.3e-05  Score=61.48  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~   36 (218)
                      .--|+++|++|+||||++..|.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999998885

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0099|consensus

Probab=98.09  E-value=1.8e-05  Score=59.49  Aligned_cols=118  Identities=20%  Similarity=0.247  Sum_probs=74.6

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh-------hhHHHHH---HHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR-------STYNHLS---SWLTDTKNLT-NPNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~---~~~~~~~~~~-~~~~piivv~nK~  130 (218)
                      ..+.|+.+|.+|+..-+..|...+..+.++|||+..+.-       .+-+.+.   .+++.+.... -..+.+|+++||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            346789999999998888999999999999999988762       1222222   2333332211 1246689999999


Q ss_pred             CCCCCc------------------------------cccHHHHHHHHHh-------------CCCcEEEeccCCCCCHHH
Q psy1169         131 DLEGSR------------------------------DVRYDEAKKFAEE-------------NDLIFVEASAMTGENVEQ  167 (218)
Q Consensus       131 Dl~~~~------------------------------~~~~~~~~~~~~~-------------~~~~~~~~S~~~~~~i~~  167 (218)
                      |+....                              ......++-+.+.             +-+.+.++.|.+..++..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            972110                              0000111112111             123356788899999999


Q ss_pred             HHHHHHHHHHHh
Q psy1169         168 AFLETAKKIYQN  179 (218)
Q Consensus       168 ~~~~i~~~~~~~  179 (218)
                      +|+..-+.|...
T Consensus       360 VFnDcrdiIqr~  371 (379)
T KOG0099|consen  360 VFNDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHHHH
Confidence            998877766553

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.09  E-value=8.8e-06  Score=65.57  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMP----DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER   76 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (218)
                      .+++|+|.+|||||||+|+|+......    ......+.+.....+..++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            489999999999999999998743211    1111122222233333322   246899999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.09  E-value=2.2e-05  Score=64.08  Aligned_cols=114  Identities=20%  Similarity=0.209  Sum_probs=74.3

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-------h---HHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-------T---YNHLSSWLTDTKNLT-NPNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s---~~~~~~~~~~~~~~~-~~~~piivv~nK~  130 (218)
                      ....+.++|++|+..-+..|..++.+++++|||+++++-.       .   +.+....+..+.... -.+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            4457889999999988889999999999999999987521       1   222222333332211 1479999999999


Q ss_pred             CCCC-----C-----------c--cccHHHHHHHHHh------------CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169         131 DLEG-----S-----------R--DVRYDEAKKFAEE------------NDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       131 Dl~~-----~-----------~--~~~~~~~~~~~~~------------~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |+-.     .           .  +-..+.+..+...            ..+.+..|+|.+..++..+|+.+.+.
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            9621     1           1  1233444444422            12245678898888899888887664

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK13796 GTPase YqeH; Provisional

Probab=98.09  E-value=5.9e-06  Score=66.66  Aligned_cols=57  Identities=19%  Similarity=0.242  Sum_probs=35.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPD----CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      .+++|+|.+|||||||+|+|+.......    ..+..+++.....+..++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            4799999999999999999986431110    1112222322333333322   3589999964

>PRK13695 putative NTPase; Provisional

Probab=98.05  E-value=0.00013  Score=52.62  Aligned_cols=80  Identities=8%  Similarity=0.087  Sum_probs=43.3

Q ss_pred             hhhccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169          83 SYYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT  161 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (218)
                      ..+..+++  +++|--.. +...  ..+.+.+......+.|++++.+|...       ......+....+..+++++-  
T Consensus        92 ~~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~~--  158 (174)
T PRK13695         92 RALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELTP--  158 (174)
T ss_pred             hccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEcc--
Confidence            33455665  57773211 1111  22333344333457899999987532       12344455556677777754  


Q ss_pred             CCCHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKI  176 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~  176 (218)
                       .|=+++.+.+++.+
T Consensus       159 -~~r~~~~~~~~~~~  172 (174)
T PRK13695        159 -ENRDSLPFEILNRL  172 (174)
T ss_pred             -hhhhhHHHHHHHHH
Confidence             45557777777654

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.04  E-value=0.00022  Score=56.43  Aligned_cols=95  Identities=8%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             EEEEEeeCcchhhhhhhhHhhhc--------cCCEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYR--------GAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      ....++++.|......+...++.        ..+++|.|+|+..-... +.......++...      =+|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence            45578899997765554444321        34788999999764321 1111122333332      288999999875


Q ss_pred             CccccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHH
Q psy1169         135 SRDVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       135 ~~~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ..    +.+.+..+.  ..++++.++. .......+|
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~~-~~v~~~~l~  196 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVVH-GDIDLSLLF  196 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEecc-CCCCHHHHh
Confidence            32    344444443  4556665542 223444444

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.98  E-value=1.6e-05  Score=62.04  Aligned_cols=60  Identities=20%  Similarity=0.272  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      -.++++|++|+|||||+|.|++.......      ......+.....+.....   ..++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999865432211      011111222223333322   2489999976543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.97  E-value=3e-05  Score=56.22  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=42.0

Q ss_pred             EEEEEeeCcchhhhhhh---hHh--hhccCCEEEEEEECCChhhHHHHHH-HHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          64 IKLQIWDTAGQERFRAV---TRS--YYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      ....|+++.|......+   ...  ..-..+.+|.|+|+..-.....+.. +..++....      ++++||+|+.... 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh-
Confidence            46677888885544443   111  1234678899999977433333333 333343322      8899999986544 


Q ss_pred             ccHHHHHHHHHh
Q psy1169         138 VRYDEAKKFAEE  149 (218)
Q Consensus       138 ~~~~~~~~~~~~  149 (218)
                      ...+..++..+.
T Consensus       158 ~~i~~~~~~ir~  169 (178)
T PF02492_consen  158 QKIERVREMIRE  169 (178)
T ss_dssp             --HHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            122444444443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=0.00014  Score=58.57  Aligned_cols=142  Identities=13%  Similarity=0.071  Sum_probs=72.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEE------------------EEEEEE---------CCeEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFG------------------TRIIEV---------HGEKI   64 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~   64 (218)
                      .--++++|++|+||||++..|.......   ........+.+                  ...+..         .....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3468899999999999999986432100   00001111110                  000100         01235


Q ss_pred             EEEEeeCcchhhhhhh----hHhh--hccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCC
Q psy1169          65 KLQIWDTAGQERFRAV----TRSY--YRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGS  135 (218)
Q Consensus        65 ~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~  135 (218)
                      .+.++||+|.......    ...+  .....-.++|++++.. +....+..-+.........  .-+--+|+||.|....
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence            7789999996532221    1111  1123345888888764 3334332222222110000  0123577899996432


Q ss_pred             ccccHHHHHHHHHhCCCcEEEeccC
Q psy1169         136 RDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                          .-.+..++...++|+..++.=
T Consensus       297 ----~G~~l~~~~~~~lPi~yvt~G  317 (374)
T PRK14722        297 ----LGGVLDTVIRYKLPVHYVSTG  317 (374)
T ss_pred             ----ccHHHHHHHHHCcCeEEEecC
Confidence                245566667778887666643

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.96  E-value=0.00056  Score=49.55  Aligned_cols=85  Identities=21%  Similarity=0.203  Sum_probs=58.6

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD  141 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~  141 (218)
                      ..+.+.|+|+|+....  .....+..+|.+++++..+.. +...+..+++.+..   .+.|+.+|+|+.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~---~~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRH---FGIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHH---cCCCEEEEEeCCCCCcc---hHH
Confidence            4578899999976432  334567889999999988844 55556566555543   24678899999996322   235


Q ss_pred             HHHHHHHhCCCcEE
Q psy1169         142 EAKKFAEENDLIFV  155 (218)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (218)
                      +++++++..+++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            67777777787755

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.95  E-value=0.00012  Score=52.81  Aligned_cols=83  Identities=14%  Similarity=0.092  Sum_probs=44.6

Q ss_pred             EEEEEEeeCcchhhhh----hhhHhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          63 KIKLQIWDTAGQERFR----AVTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      .+.+.|+|++|.....    .....+.  ...+.+++|+|......  .+ .+...+....  + ...+++||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence            3457789999964221    1111122  24889999999865432  12 2333332222  2 356777999974432


Q ss_pred             cccHHHHHHHHHhCCCcEE
Q psy1169         137 DVRYDEAKKFAEENDLIFV  155 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~  155 (218)
                          ..+...+...++|+.
T Consensus       156 ----g~~~~~~~~~~~p~~  170 (173)
T cd03115         156 ----GAALSIRAVTGKPIK  170 (173)
T ss_pred             ----chhhhhHHHHCcCeE
Confidence                223335555666644

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.95  E-value=1.7e-05  Score=62.34  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++++|++|+|||||+|.|++..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999998654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.93  E-value=0.00026  Score=52.12  Aligned_cols=86  Identities=16%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             EEEEEeeCcchhhhhh----hhHhhhc--cCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          64 IKLQIWDTAGQERFRA----VTRSYYR--GAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      +.+.++||+|......    ....++.  ..+-+++|++++.... .+.+..++..+    .   +--+++||.|.... 
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~---~~~lIlTKlDet~~-  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----G---IDGLILTKLDETAR-  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----S---TCEEEEESTTSSST-
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----c---CceEEEEeecCCCC-
Confidence            5688999999443211    1111211  5677899999887643 33333332221    1   12567999996433 


Q ss_pred             cccHHHHHHHHHhCCCcEEEeccC
Q psy1169         137 DVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                         .-.+..++...++|+-.++.=
T Consensus       156 ---~G~~l~~~~~~~~Pi~~it~G  176 (196)
T PF00448_consen  156 ---LGALLSLAYESGLPISYITTG  176 (196)
T ss_dssp             ---THHHHHHHHHHTSEEEEEESS
T ss_pred             ---cccceeHHHHhCCCeEEEECC
Confidence               244566667778886666643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.91  E-value=0.00026  Score=59.22  Aligned_cols=137  Identities=15%  Similarity=0.183  Sum_probs=71.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeE----------------EEEEEEEC-----------CeE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEF----------------GTRIIEVH-----------GEK   63 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~----------------~~~~~~~~-----------~~~   63 (218)
                      ..-.|+|+|+.|+||||++..|...-...   ........+.                ........           ...
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            34578999999999999998886421000   0000000000                00000001           124


Q ss_pred             EEEEEeeCcchhhhhhhhHh---hhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          64 IKLQIWDTAGQERFRAVTRS---YYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      +.+.|+||+|..........   .+.  .....++|++....  ...+...++.+..    ..+.-+|+||.|...    
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~----  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG----  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----
Confidence            67889999995432211000   011  12235677777643  3333333333322    235678999999632    


Q ss_pred             cHHHHHHHHHhCCCcEEEeccC
Q psy1169         139 RYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      ..-.+..+....++++..++.=
T Consensus       499 ~lG~aLsv~~~~~LPI~yvt~G  520 (559)
T PRK12727        499 RFGSALSVVVDHQMPITWVTDG  520 (559)
T ss_pred             chhHHHHHHHHhCCCEEEEeCC
Confidence            2245666667778887766643

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.87  E-value=0.00017  Score=50.61  Aligned_cols=58  Identities=14%  Similarity=0.065  Sum_probs=35.0

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD  131 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D  131 (218)
                      .+.+.|+|++|....   ...++..+|-+|++...+-.+.+.-++.  ..+..      -=+++.||.|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~------~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEI------ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhh------cCEEEEeCCC
Confidence            467788999885422   2347788898888877774444333222  11211      1278889987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG3859|consensus

Probab=97.85  E-value=0.0001  Score=55.97  Aligned_cols=62  Identities=26%  Similarity=0.482  Sum_probs=42.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----CPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ....++|+-+|..|.|||||+..|.+-.+...    ..+.......+..+.-.+-.+.+.|+||.|
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            34579999999999999999999987665433    223333333333333344567888999999

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.84  E-value=0.00086  Score=54.02  Aligned_cols=154  Identities=16%  Similarity=0.107  Sum_probs=80.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEEEEE-----------------EEEC----------CeEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRI-----------------IEVH----------GEKI   64 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~-----------------~~~~----------~~~~   64 (218)
                      .=-|+++||.||||||.+-.|.......   .....++.+.+...                 +...          -..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            4468999999999999988875433211   11111222211100                 0000          1245


Q ss_pred             EEEEeeCcchhhhhh----hhHhhhccC--CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          65 KLQIWDTAGQERFRA----VTRSYYRGA--AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        65 ~~~i~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      .+.++||.|...++.    -...++..+  .-+.+|++++...  +++...++.+....    .--+++||.|...    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~~----i~~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLFP----IDGLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccCC----cceeEEEcccccC----
Confidence            788999999654332    233343333  2346677776552  34444444443321    1256789999642    


Q ss_pred             cHHHHHHHHHhCCCcEEEeccCCC--CCHHHH-HHHHHHHHHH
Q psy1169         139 RYDEAKKFAEENDLIFVEASAMTG--ENVEQA-FLETAKKIYQ  178 (218)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~S~~~~--~~i~~~-~~~i~~~~~~  178 (218)
                      ..-....++...+.|+..++.=.+  +++... -+++++.+..
T Consensus       353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g  395 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILG  395 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhc
Confidence            234566667777888666654433  222211 1455555544

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=7.7e-05  Score=60.92  Aligned_cols=135  Identities=16%  Similarity=0.118  Sum_probs=70.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEE----------------EEEEEE-----------CCeEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFG----------------TRIIEV-----------HGEKI   64 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~----------------~~~~~~-----------~~~~~   64 (218)
                      .-.|+++|+.|+||||++..|.+.....   ........+.+                ......           .-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            3589999999999999999876431100   00000000000                000000           01234


Q ss_pred             EEEEeeCcchhhhh----hhhHhhhc--cCCEEEEEEECCC-hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          65 KLQIWDTAGQERFR----AVTRSYYR--GAAGALMVYDITR-RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        65 ~~~i~D~~G~~~~~----~~~~~~~~--~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      .+.++||+|.....    .....+..  ..+-.++|+|++. .....++...+   .    .--+--+++||.|....  
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f---~----~~~~~~~I~TKlDEt~~--  341 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY---Q----GHGIHGCIITKVDEAAS--  341 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh---c----CCCCCEEEEEeeeCCCC--
Confidence            66799999954321    11222221  2334678888885 33333332222   2    11223678999996432  


Q ss_pred             ccHHHHHHHHHhCCCcEEEeccC
Q psy1169         138 VRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                        .-.+..++...++|+..++.=
T Consensus       342 --~G~~l~~~~~~~lPi~yvt~G  362 (420)
T PRK14721        342 --LGIALDAVIRRKLVLHYVTNG  362 (420)
T ss_pred             --ccHHHHHHHHhCCCEEEEECC
Confidence              244556677778887766643

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=0.00039  Score=56.13  Aligned_cols=86  Identities=15%  Similarity=0.086  Sum_probs=47.8

Q ss_pred             EEEEEeeCcchhhhhh----hhHhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          64 IKLQIWDTAGQERFRA----VTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      +.+.|+||+|......    ....++  ...+.+++|+|++-..  +++...+..+..    -.+--+++||.|....  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence            5788999999643111    112222  2346678888875432  222233332222    1224678999997432  


Q ss_pred             ccHHHHHHHHHhCCCcEEEecc
Q psy1169         138 VRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                        .-.+..++...++|+..++.
T Consensus       393 --~G~iLni~~~~~lPIsyit~  412 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMTD  412 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              24455666677888666654

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.74  E-value=0.00083  Score=53.79  Aligned_cols=98  Identities=15%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             EEEEEeeCcchhhhhhhhHhhh-------ccCCEEEEEEECCChhh--H--------------------HHHHH-HHHHH
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYY-------RGAAGALMVYDITRRST--Y--------------------NHLSS-WLTDT  113 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~-~~~~~  113 (218)
                      ....++++.|......+...+.       -..|++|.|+|+..-..  +                    ..+.. +..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4566889999766555444431       14678899999874311  0                    00111 12333


Q ss_pred             hhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CC--CcEEEeccCCCCCHHHHHH
Q psy1169         114 KNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-ND--LIFVEASAMTGENVEQAFL  170 (218)
Q Consensus       114 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~S~~~~~~i~~~~~  170 (218)
                      ...      =+|++||+|+....++  +.+++.... +.  .+++++. ........+|+
T Consensus       173 ~~A------D~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       173 ACA------DLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             HhC------CEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence            322      2899999999765433  344444443 22  3455554 33455665554

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=0.00033  Score=56.29  Aligned_cols=88  Identities=13%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             EEEEEEeeCcchhhhh----hhhHhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          63 KIKLQIWDTAGQERFR----AVTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~----~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      .+.+.|+||+|.....    .....+..  ..+.+++|++...  ...++...+....    .-.+--+++||.|.... 
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~~-  357 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETTR-  357 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCCC-
Confidence            3678899999963221    11222222  3355566766532  2333333332221    11234677999996422 


Q ss_pred             cccHHHHHHHHHhCCCcEEEeccC
Q psy1169         137 DVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                         .-.+..++...++|+..++.=
T Consensus       358 ---~G~~Lsv~~~tglPIsylt~G  378 (407)
T PRK12726        358 ---IGDLYTVMQETNLPVLYMTDG  378 (407)
T ss_pred             ---ccHHHHHHHHHCCCEEEEecC
Confidence               245566677778887766653

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.72  E-value=0.0004  Score=45.50  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=49.3

Q ss_pred             EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          18 YIIIG-DMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        18 i~v~G-~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      |.|.| ..|+||||+...+...-.. ...+       ...+..+ ..+.+.++|+|+.....  ....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56677 4689999998777432211 1111       1222222 12678899999875432  3367778999999987


Q ss_pred             CCChhhHHHHHHHHH
Q psy1169          97 ITRRSTYNHLSSWLT  111 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~  111 (218)
                      .+. .++..+..+++
T Consensus        71 ~~~-~s~~~~~~~~~   84 (104)
T cd02042          71 PSP-LDLDGLEKLLE   84 (104)
T ss_pred             CCH-HHHHHHHHHHH
Confidence            754 34555555444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.70  E-value=0.00054  Score=47.26  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -.++|.|++|+|||++++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999997654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG1424|consensus

Probab=97.67  E-value=6.1e-05  Score=61.71  Aligned_cols=59  Identities=19%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      +...+.|.+||.|+|||||+||.|.+.+... +..|.-+..+.+..+  .   -.+.+.|+||..
T Consensus       311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--s---~~v~LCDCPGLV  370 (562)
T KOG1424|consen  311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--S---PSVCLCDCPGLV  370 (562)
T ss_pred             CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--C---CCceecCCCCcc
Confidence            3447999999999999999999999876432 222222223322222  2   145688999965

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00028  Score=57.44  Aligned_cols=135  Identities=18%  Similarity=0.172  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC-CCC---------CCCC------------ceeeeEEEEE-E-----EECCeEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK-FMP---------DCPH------------TIGVEFGTRI-I-----EVHGEKIKLQ   67 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~-~~~---------~~~~------------~~~~~~~~~~-~-----~~~~~~~~~~   67 (218)
                      .-++|+|++|+||||++..|.... ...         ...+            ..+....... .     ......+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886421 000         0000            0011110000 0     0011245778


Q ss_pred             EeeCcchhhhh--h--hhHhhhc-----cCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          68 IWDTAGQERFR--A--VTRSYYR-----GAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        68 i~D~~G~~~~~--~--~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      ++||+|.....  .  ....+++     ...-.++|+|++... ....+...+   .    .--+--+|+||.|-...  
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f---~----~~~~~glIlTKLDEt~~--  374 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY---E----SLNYRRILLTKLDEADF--  374 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh---c----CCCCCEEEEEcccCCCC--
Confidence            99999954211  1  1222222     123568899988764 333332222   1    11223678999996432  


Q ss_pred             ccHHHHHHHHHhCCCcEEEeccCC
Q psy1169         138 VRYDEAKKFAEENDLIFVEASAMT  161 (218)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~S~~~  161 (218)
                        .-.+..++...++|+..++.=+
T Consensus       375 --~G~il~i~~~~~lPI~ylt~GQ  396 (432)
T PRK12724        375 --LGSFLELADTYSKSFTYLSVGQ  396 (432)
T ss_pred             --ccHHHHHHHHHCCCEEEEecCC
Confidence              2345566667788876666543

>PRK10867 signal recognition particle protein; Provisional

Probab=97.62  E-value=0.00046  Score=56.79  Aligned_cols=87  Identities=14%  Similarity=0.040  Sum_probs=46.8

Q ss_pred             EEEEEEeeCcchhhhhh----hhHhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          63 KIKLQIWDTAGQERFRA----VTRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      .+.+.|+||+|.-....    ....+  .-..+.+++|+|....   +++......+....   ...-+|+||.|.....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rg  256 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARG  256 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence            36788999999532211    11111  1256778999998653   23333333333211   1235677999963222


Q ss_pred             cccHHHHHHHHHhCCCcEEEecc
Q psy1169         137 DVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                          -.+.......++|+.++..
T Consensus       257 ----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 ----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC
Confidence                2245555666778666554

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.62  E-value=0.00039  Score=48.23  Aligned_cols=106  Identities=10%  Similarity=0.064  Sum_probs=60.2

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC
Q psy1169          19 IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT   98 (218)
Q Consensus        19 ~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   98 (218)
                      +.-|..|+|||++.-.+...-.. ......-.+....   ...-.+.+.++|+|+...  ......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLG---LANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCC---CCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC
Confidence            45578999999987766432110 1111111111100   011126788999998543  33456788999999998886


Q ss_pred             ChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          99 RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        99 ~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      .. ++..+...++.+.... ...++.+++|+.+.
T Consensus        78 ~~-s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 PT-SITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             hh-HHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            44 3333334444443322 34567899999874

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.62  E-value=0.00031  Score=40.18  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             ccCCEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169          86 RGAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMD  131 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~D  131 (218)
                      .-.++++|++|.+..  .+.+.-..+++.+.... .+.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            456889999999884  55555556777777766 4799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1487|consensus

Probab=97.61  E-value=0.00085  Score=50.67  Aligned_cols=82  Identities=21%  Similarity=0.160  Sum_probs=47.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-------hhhHhhhccC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYRGA   88 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~   88 (218)
                      .+|-++|.|.+||||++..+.+.....................+++  -.+.+.|.||.-+-.       .......+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999876433221111111111111222333  356677999953211       1222345677


Q ss_pred             CEEEEEEECCC
Q psy1169          89 AGALMVYDITR   99 (218)
Q Consensus        89 d~~i~v~d~~~   99 (218)
                      +.+++|+|+..
T Consensus       138 nli~~vld~~k  148 (358)
T KOG1487|consen  138 NLIFIVLDVLK  148 (358)
T ss_pred             cEEEEEeeccC
Confidence            88888888754

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.60  E-value=0.00082  Score=52.12  Aligned_cols=92  Identities=21%  Similarity=0.183  Sum_probs=62.7

Q ss_pred             HhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169          82 RSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      +.-..+.|-.|+++.+.+++ +...+..++-.+..   .++..+|++||.||....+...++........+.+++.+|++
T Consensus        74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~  150 (301)
T COG1162          74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK  150 (301)
T ss_pred             CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence            33344567777777777764 45555555433332   456678889999997665443334555566689999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAKKI  176 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~  176 (218)
                      ++.+++++.+.+...+
T Consensus       151 ~~~~~~~l~~~l~~~~  166 (301)
T COG1162         151 NGDGLEELAELLAGKI  166 (301)
T ss_pred             CcccHHHHHHHhcCCe
Confidence            9999998887765543

>TIGR00959 ffh signal recognition particle protein

Probab=97.59  E-value=0.00062  Score=55.96  Aligned_cols=87  Identities=13%  Similarity=0.032  Sum_probs=48.1

Q ss_pred             EEEEEEeeCcchhhhhh----hhHhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          63 KIKLQIWDTAGQERFRA----VTRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      .+.+.|+||+|.-....    ....+  .-..+.+++|+|+...   +....+...+....   ...-+|+||.|-....
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~~~  255 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDARG  255 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence            35788999999532211    11111  2257888999998754   23333333333222   1236679999953222


Q ss_pred             cccHHHHHHHHHhCCCcEEEecc
Q psy1169         137 DVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                          -.+...+...++|+.++..
T Consensus       256 ----G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 ----GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC
Confidence                2355556667788666554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0469|consensus

Probab=97.59  E-value=0.00021  Score=58.69  Aligned_cols=117  Identities=21%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC------------CCC----CCCCceeeeEEEEEE--E------------ECC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------------FMP----DCPHTIGVEFGTRII--E------------VHG   61 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~------------~~~----~~~~~~~~~~~~~~~--~------------~~~   61 (218)
                      ..+.-++.|+.....|||||-..|....            |..    +..+.+++.......  +            -++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            3566788999999999999999986321            111    111122222111111  1            123


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      ..+-+.++|.||+..|.+.....++-.|+.++|+|.-+..-.+.-..+.+.+..    .+.-++++||.|.
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR  162 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR  162 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence            457788999999999999999999999999999999886544333233333332    3334788999994

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.58  E-value=0.00054  Score=46.65  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.56  E-value=7.7e-05  Score=50.30  Aligned_cols=21  Identities=43%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|.|++||||||+.+.|..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999965

...

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.56  E-value=0.00085  Score=55.30  Aligned_cols=88  Identities=16%  Similarity=0.102  Sum_probs=48.5

Q ss_pred             EEEEEEeeCcchhhhh----hhhHhhhc---cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          63 KIKLQIWDTAGQERFR----AVTRSYYR---GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      .+.+.|+||+|.....    .....++.   ...-.++|++.+-..  ..+...+..+..   -+ +--+++||.|....
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~---~~-~~~vI~TKlDet~~  372 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSR---LP-LDGLIFTKLDETSS  372 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCC---CC-CCEEEEeccccccc
Confidence            3578899999964322    11222333   233557778876542  223232222221   11 23688999996322


Q ss_pred             ccccHHHHHHHHHhCCCcEEEeccC
Q psy1169         136 RDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                          ...+..++...++|+..++.=
T Consensus       373 ----~G~i~~~~~~~~lPv~yit~G  393 (424)
T PRK05703        373 ----LGSILSLLIESGLPISYLTNG  393 (424)
T ss_pred             ----ccHHHHHHHHHCCCEEEEeCC
Confidence                235667777788887766653

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.55  E-value=0.00092  Score=42.75  Aligned_cols=70  Identities=16%  Similarity=0.162  Sum_probs=44.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh-hHhhhccCCEEEEEEE
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-TRSYYRGAAGALMVYD   96 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   96 (218)
                      +++.|..|+||||+...+...-....          .+...++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g----------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG----------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC----------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            67889999999999988754321111          1111112    6778999986543321 2455667888888887


Q ss_pred             CCChh
Q psy1169          97 ITRRS  101 (218)
Q Consensus        97 ~~~~~  101 (218)
                      .....
T Consensus        68 ~~~~~   72 (99)
T cd01983          68 PEALA   72 (99)
T ss_pred             Cchhh
Confidence            77653

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.54  E-value=0.00075  Score=48.39  Aligned_cols=142  Identities=21%  Similarity=0.291  Sum_probs=76.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc---------hhhhhh---------
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG---------QERFRA---------   79 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---------~~~~~~---------   79 (218)
                      |.|+|.+|+|||||++.+.-.+.+.           ...+.+++..+.+. -|..|         .++.+.         
T Consensus        35 isIIGsSGSGKSTfLRCiN~LE~P~-----------~G~I~v~geei~~k-~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~F  102 (256)
T COG4598          35 ISIIGSSGSGKSTFLRCINFLEKPS-----------AGSIRVNGEEIRLK-RDKDGQLKPADKRQLQRLRTRLGMVFQHF  102 (256)
T ss_pred             EEEecCCCCchhHHHHHHHhhcCCC-----------CceEEECCeEEEee-eCCCCCeeeCCHHHHHHHHHHhhHhhhhc
Confidence            7899999999999999885433221           11222344333332 23333         111111         


Q ss_pred             -hhHhh--hcc-CCEEEEEEECCChhhHHHHHHHHHHHhhhcCC-CCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcE
Q psy1169          80 -VTRSY--YRG-AAGALMVYDITRRSTYNHLSSWLTDTKNLTNP-NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIF  154 (218)
Q Consensus        80 -~~~~~--~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  154 (218)
                       +|.+.  +.+ ..+-+-|+-.+..+..+.+..++..+..+.+. .-|.       -|....+.....+++++.+..+.+
T Consensus       103 NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-------~LSGGQQQR~aIARaLameP~vmL  175 (256)
T COG4598         103 NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA-------HLSGGQQQRVAIARALAMEPEVML  175 (256)
T ss_pred             chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc-------ccCchHHHHHHHHHHHhcCCceEe
Confidence             11111  111 12335555556566666665555444332211 1221       122233334456777887877777


Q ss_pred             E--EeccCCCCCHHHHHHHHHHHHHH
Q psy1169         155 V--EASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       155 ~--~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      |  ++||++.+=+-+++..+-+.+.+
T Consensus       176 FDEPTSALDPElVgEVLkv~~~LAeE  201 (256)
T COG4598         176 FDEPTSALDPELVGEVLKVMQDLAEE  201 (256)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHh
Confidence            7  59999999888888877776644

>PRK08118 topology modulation protein; Reviewed

Probab=97.53  E-value=8.6e-05  Score=53.25  Aligned_cols=22  Identities=50%  Similarity=0.699  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ||+|+|++|+|||||.+.|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998643

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.52  E-value=8.3e-05  Score=53.80  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999765

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.52  E-value=0.00056  Score=46.86  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999999764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.50  E-value=0.0032  Score=52.02  Aligned_cols=86  Identities=16%  Similarity=0.073  Sum_probs=46.2

Q ss_pred             EEEEEeeCcchhhhhh-h---hH--hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          64 IKLQIWDTAGQERFRA-V---TR--SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      ..+.|+||+|...... +   ..  ..+-.+|.+++|+|++...   +.......+....   ...-+|+||.|....- 
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~~-  248 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAKG-  248 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCcc-
Confidence            3788999999543221 1   11  1133578899999987752   2222222222111   1236778999963221 


Q ss_pred             ccHHHHHHHHHhCCCcEEEecc
Q psy1169         138 VRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                         --+..+....+.|+.+++.
T Consensus       249 ---G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        249 ---GGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ---cHHHHHHHHHCcCEEEEec
Confidence               2344445556677555543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.49  E-value=0.00075  Score=56.19  Aligned_cols=102  Identities=17%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             EEEEEeeCcchhhhhh---hhHhhhcc---CCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          64 IKLQIWDTAGQERFRA---VTRSYYRG---AAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      ..+.++||+|......   .....+..   ..-.++|+|.... ....++...+.       ....--+|+||.|.... 
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-------~~~~~g~IlTKlDet~~-  406 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-------GPGLAGCILTKLDEAAS-  406 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-------cCCCCEEEEeCCCCccc-
Confidence            3567999999432221   11111221   1225788888754 32322222221       12234577899996432 


Q ss_pred             cccHHHHHHHHHhCCCcEEEeccCCCCCH-HHHH----HHHHHHHHH
Q psy1169         137 DVRYDEAKKFAEENDLIFVEASAMTGENV-EQAF----LETAKKIYQ  178 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i-~~~~----~~i~~~~~~  178 (218)
                         .-.+..+....++++..++.=  .++ +++.    +.+++.++.
T Consensus       407 ---~G~~l~i~~~~~lPI~yvt~G--Q~VPeDL~~a~~~~lv~~ll~  448 (484)
T PRK06995        407 ---LGGALDVVIRYKLPLHYVSNG--QRVPEDLHLANKKFLLHRAFC  448 (484)
T ss_pred             ---chHHHHHHHHHCCCeEEEecC--CCChhhhccCCHHHHHHHHhc
Confidence               245666677778887766643  344 3332    344555544

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.47  E-value=0.00094  Score=58.38  Aligned_cols=136  Identities=15%  Similarity=0.074  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCceeeeEEE----------------EEEEE-----------CCeEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPD---CPHTIGVEFGT----------------RIIEV-----------HGEKIKL   66 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~---~~~~~~~~~~~----------------~~~~~-----------~~~~~~~   66 (218)
                      -|+|+|+.|+||||++..|........   .......+.+.                .....           ....+.+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            578999999999999998864321000   00000000000                00000           0123467


Q ss_pred             EEeeCcchhhh----hhhhHhhh--ccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc
Q psy1169          67 QIWDTAGQERF----RAVTRSYY--RGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR  139 (218)
Q Consensus        67 ~i~D~~G~~~~----~~~~~~~~--~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~  139 (218)
                      .|+||+|.-..    ........  ...+-.++|+|.+.. +.+.++...+....   .. -+--+|+||.|....    
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~---~~-~i~glIlTKLDEt~~----  338 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA---GE-DVDGCIITKLDEATH----  338 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc---cC-CCCEEEEeccCCCCC----
Confidence            89999993221    11111111  234456889988753 33443333222211   00 123677999996432    


Q ss_pred             HHHHHHHHHhCCCcEEEeccC
Q psy1169         140 YDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      .-.+..+....++|+..++.=
T Consensus       339 ~G~iL~i~~~~~lPI~yit~G  359 (767)
T PRK14723        339 LGPALDTVIRHRLPVHYVSTG  359 (767)
T ss_pred             ccHHHHHHHHHCCCeEEEecC
Confidence            244556666778887766643

>PRK07261 topology modulation protein; Provisional

Probab=97.46  E-value=0.00012  Score=52.71  Aligned_cols=22  Identities=41%  Similarity=0.620  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+|+|+|++|+|||||.+.|..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>KOG0780|consensus

Probab=97.46  E-value=0.00062  Score=54.23  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=20.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      .....-=|.++|..|+||||.+-.|.
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA  122 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLA  122 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHH
Confidence            34455568999999999999987774

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.45  E-value=0.0038  Score=45.17  Aligned_cols=87  Identities=17%  Similarity=0.082  Sum_probs=46.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEE--EeeCcchh-hhhhhhHhhhccCCEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQ--IWDTAGQE-RFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~D~~G~~-~~~~~~~~~~~~~d~~i   92 (218)
                      =.++++|++|+|||||++.+.+...+..  ..         +.+++..+.+.  -.+..|.+ ..-.+....+...++++
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~---------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll   94 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNG--DN---------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL   94 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCC--cE---------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3688999999999999998876542211  11         11222221111  11133433 33445666666666655


Q ss_pred             EE--EECCChhhHHHHHHHHHHH
Q psy1169          93 MV--YDITRRSTYNHLSSWLTDT  113 (218)
Q Consensus        93 ~v--~d~~~~~s~~~~~~~~~~~  113 (218)
                      +-  ...-|..+.+.+..++..+
T Consensus        95 LDEPts~LD~~~~~~l~~~l~~~  117 (177)
T cd03222          95 FDEPSAYLDIEQRLNAARAIRRL  117 (177)
T ss_pred             EECCcccCCHHHHHHHHHHHHHH
Confidence            52  2234455555555555544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.42  E-value=0.00013  Score=50.75  Aligned_cols=20  Identities=35%  Similarity=0.572  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+++|++|+|||||++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999964

...

>KOG2485|consensus

Probab=97.40  E-value=0.00033  Score=54.18  Aligned_cols=61  Identities=20%  Similarity=0.297  Sum_probs=35.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCC----CCCCCCceeeeEEEEE-EEECCeEEEEEEeeCcch
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF----MPDCPHTIGVEFGTRI-IEVHGEKIKLQIWDTAGQ   74 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~   74 (218)
                      ...+++.|+|.||+|||||+|.+.....    ........+++..... +.+.... .+.++||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            4568999999999999999998853211    1111112222222222 3332222 3567899994

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.40  E-value=0.00019  Score=42.03  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.+|.|+.|+|||||+..+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998853

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.38  E-value=0.0066  Score=42.36  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46899999999999999986653

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.38  E-value=0.00084  Score=50.01  Aligned_cols=63  Identities=24%  Similarity=0.278  Sum_probs=36.7

Q ss_pred             EEEEEeeCc-chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          64 IKLQIWDTA-GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        64 ~~~~i~D~~-G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      +.+.++||- |.+.|   .+...+.+|.+|+|+|.+-+ ++...+... .+....+ -.++.+|+||.|-
T Consensus       134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~taeri~-~L~~elg-~k~i~~V~NKv~e  197 (255)
T COG3640         134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAERIK-ELAEELG-IKRIFVVLNKVDE  197 (255)
T ss_pred             CcEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHHHHH-HHHHHhC-CceEEEEEeeccc
Confidence            344556653 23333   34556789999999998864 222222222 2222111 3779999999995

>PRK10646 ADP-binding protein; Provisional

Probab=97.37  E-value=0.0019  Score=45.31  Aligned_cols=60  Identities=15%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRA   79 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~   79 (218)
                      -|++-|+-|+|||||.+.+...--.  ....||...   ...+.. +..-+.+.+|-..+.++...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtl---v~~Y~~~~~~l~H~DlYRL~~~~el~~   92 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTL---VEPYTLDNLMVYHFDLYRLADPEELEF   92 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEee---EEEeeCCCCCEEEEeeccCCCHHHHHH
Confidence            3889999999999999999753211  122233211   122211 22346777777665544433

>KOG2484|consensus

Probab=97.36  E-value=0.00019  Score=57.18  Aligned_cols=59  Identities=22%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ...+++.|+|-|++||||+||+|.....-.. ....+.+...+.+..+   -.+.|+|.||.-
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ld---k~i~llDsPgiv  308 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLD---KKIRLLDSPGIV  308 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheecc---CCceeccCCcee
Confidence            5779999999999999999999987664221 2233444444444433   356788999943

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.35  E-value=0.00011  Score=52.75  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      ..=++|.||+|+|||||++.|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3568999999999999999998765

>PF05729 NACHT: NACHT domain

Probab=97.34  E-value=0.0026  Score=45.03  Aligned_cols=21  Identities=43%  Similarity=0.659  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      ++|.|++|+||||++.++...
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            689999999999999998753

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.32  E-value=0.0037  Score=50.82  Aligned_cols=87  Identities=10%  Similarity=0.030  Sum_probs=48.7

Q ss_pred             EEEEEEeeCcchhhhhh----hhHhhhccC--C-EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          63 KIKLQIWDTAGQERFRA----VTRSYYRGA--A-GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      .+.+.|+||+|.-....    ....++...  + -.++|+|++...  ..+...+.....    -.+--+++||.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCCc
Confidence            46788999999543211    122233322  3 478999988762  233333332221    1234678999996433


Q ss_pred             ccccHHHHHHHHHhCCCcEEEecc
Q psy1169         136 RDVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                          .-.+..++...++|+..++.
T Consensus       328 ----~G~~l~~~~~~~~Pi~yit~  347 (388)
T PRK12723        328 ----VGNLISLIYEMRKEVSYVTD  347 (388)
T ss_pred             ----chHHHHHHHHHCCCEEEEeC
Confidence                23455566667888666654

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.29  E-value=0.00068  Score=45.78  Aligned_cols=75  Identities=13%  Similarity=0.216  Sum_probs=39.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      -|++-|+-|+|||||.+.+...--.  ....||...   ...+.... .-+.+.++-..+.++...+.-..+-..+++++
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l---~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~   93 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSL---VNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICV   93 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT--S----TTTTS---EEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEE---EEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEE
Confidence            4889999999999999999753211  222233222   22222222 34567777776666554433222223366666


Q ss_pred             E
Q psy1169          94 V   94 (218)
Q Consensus        94 v   94 (218)
                      |
T Consensus        94 I   94 (123)
T PF02367_consen   94 I   94 (123)
T ss_dssp             E
T ss_pred             E
Confidence            6

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.29  E-value=0.0033  Score=48.61  Aligned_cols=133  Identities=20%  Similarity=0.165  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC---------CCCC------------CceeeeEEEEEEE----------E-CCeE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFM---------PDCP------------HTIGVEFGTRIIE----------V-HGEK   63 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~---------~~~~------------~~~~~~~~~~~~~----------~-~~~~   63 (218)
                      -+++++|++|+||||++..+...-..         ....            ...++..... ..          . ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            58999999999999999887532100         0000            0011111000 00          0 0124


Q ss_pred             EEEEEeeCcchhhhhh----hhHhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          64 IKLQIWDTAGQERFRA----VTRSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      +.+.|+||+|......    ....++  -..+-+++|+|++....  ++..+++.+..    -.+--+++||.|....  
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~--d~~~~~~~f~~----~~~~~~I~TKlDet~~--  226 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK--DMIEIITNFKD----IHIDGIVFTKFDETAS--  226 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH--HHHHHHHHhCC----CCCCEEEEEeecCCCC--
Confidence            6788999999652211    111122  23456789999864321  22223222222    2234678999997442  


Q ss_pred             ccHHHHHHHHHhCCCcEEEecc
Q psy1169         138 VRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                        .-.+..++...++|+..++.
T Consensus       227 --~G~~l~~~~~~~~Pi~~it~  246 (270)
T PRK06731        227 --SGELLKIPAVSSAPIVLMTD  246 (270)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              23455566667888666654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.28  E-value=0.0003  Score=42.48  Aligned_cols=21  Identities=38%  Similarity=0.571  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999998654

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.27  E-value=0.00017  Score=51.51  Aligned_cols=22  Identities=23%  Similarity=0.532  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999754

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.26  E-value=0.0017  Score=44.99  Aligned_cols=78  Identities=13%  Similarity=0.191  Sum_probs=41.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      -=|++-|+-|+|||||.+.+...--........+++. ...+.. ...-+.+.+|-....+++..+--..+-..+++++|
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl-v~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~~~gv~lI  104 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL-VEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFDGDGICLI  104 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee-ehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhCCCcEEEE
Confidence            3478899999999999999975432222111111111 222211 23456777777765554443322222223666666

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.00034  Score=52.60  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      |+++|++|||||||++-+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999887643

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.22  E-value=0.0034  Score=41.36  Aligned_cols=100  Identities=14%  Similarity=0.032  Sum_probs=54.6

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh
Q psy1169          21 IGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR  100 (218)
Q Consensus        21 ~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  100 (218)
                      -+..|+||||+...|...-.........-.+...      ...-.+.++|+|+....  .....+..+|.+|++.+.+..
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~------~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~   77 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDL------QFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLP   77 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC------CCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChH
Confidence            3457899999887764321111011111111100      01117789999986543  334567889999888866543


Q ss_pred             hhHHHHHHHHHHHhhhcCC-CCeEEEEeeC
Q psy1169         101 STYNHLSSWLTDTKNLTNP-NTVIFLIGNK  129 (218)
Q Consensus       101 ~s~~~~~~~~~~~~~~~~~-~~piivv~nK  129 (218)
                       +...+..+++.+.....+ ...+.+|+|+
T Consensus        78 -s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 -SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             -HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence             444555555555544333 3456677664

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.20  E-value=0.0003  Score=52.54  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|||||||++-+-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3789999999999999988543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.19  E-value=0.00035  Score=48.17  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999886543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK06217 hypothetical protein; Validated

Probab=97.19  E-value=0.00036  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .+|+|+|.+|+|||||.+.|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999653

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.18  E-value=0.0027  Score=46.87  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      |+|+|++|+||||+++.++..-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG0459|consensus

Probab=97.17  E-value=0.00058  Score=54.61  Aligned_cols=157  Identities=20%  Similarity=0.172  Sum_probs=86.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCC-------------------------------CCCCCCCceeeeEEEEEEEE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK-------------------------------FMPDCPHTIGVEFGTRIIEV   59 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   59 (218)
                      ++...++++|+|.-.+||||+-..|+...                               ..++.....+..  .....+
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvE--vGrA~F  152 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVE--VGRAYF  152 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceee--eeeEEE
Confidence            34677999999999999999876653210                               000111001111  111112


Q ss_pred             CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh---HHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCC
Q psy1169          60 HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~  135 (218)
                      +-..-.+.|.|.||+..|-.....-...+|..++|+++.-.+-   |+.--.-......+.- .-...++++||+|-+..
T Consensus       153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv  232 (501)
T KOG0459|consen  153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV  232 (501)
T ss_pred             EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence            2233467899999998876655555567888888888755332   2221111111111111 23457888999996432


Q ss_pred             c--cccHHH----HHHHHHh------CCCcEEEeccCCCCCHHHHH
Q psy1169         136 R--DVRYDE----AKKFAEE------NDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       136 ~--~~~~~~----~~~~~~~------~~~~~~~~S~~~~~~i~~~~  169 (218)
                      .  .-.+++    ...+...      ....++++|..+|.++.+..
T Consensus       233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            1  111122    2233332      23448999999999988754

>TIGR00235 udk uridine kinase

Probab=97.17  E-value=0.00052  Score=51.02  Aligned_cols=27  Identities=26%  Similarity=0.183  Sum_probs=22.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ++...-|+|+|++|+|||||++.+.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            345567999999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK03839 putative kinase; Provisional

Probab=97.17  E-value=0.00038  Score=50.49  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      +|+|+|++|+||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988643

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.16  E-value=0.0053  Score=47.79  Aligned_cols=105  Identities=15%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc------------------
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG------------------   73 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G------------------   73 (218)
                      ..+-..++++|++|-|||+++++|....... .....             ..+.+..+..|.                  
T Consensus        58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             ccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            3444779999999999999999998654322 11110             011222333333                  


Q ss_pred             ------hhhhhhhhHhhhccCCEEEEEEECCCh---hhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169          74 ------QERFRAVTRSYYRGAAGALMVYDITRR---STYNHLSSWLTDTKNLT-NPNTVIFLIGNKM  130 (218)
Q Consensus        74 ------~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~piivv~nK~  130 (218)
                            ...........++...+=++++|--..   .+...-..++..+.... .-++|++.+|+..
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                  111223344567777777999985432   22222233333333332 2479999998764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.15  E-value=0.00037  Score=50.88  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999554

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.14  E-value=0.011  Score=46.17  Aligned_cols=73  Identities=18%  Similarity=0.264  Sum_probs=42.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc--CCEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG--AAGALMV   94 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~v   94 (218)
                      .|+|.|++|+||||+++.|....+                          ..+|-.....+..+.......  .+.+.++
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~~~g~--------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av~   61 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALEDLGY--------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAVV   61 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHHHcCC--------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence            689999999999999999942211                          012333333333333322222  3556777


Q ss_pred             EECCChhhHHHHHHHHHHHhh
Q psy1169          95 YDITRRSTYNHLSSWLTDTKN  115 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~  115 (218)
                      +|+.....+..+...+..+..
T Consensus        62 iD~r~~~~~~~~~~~~~~L~~   82 (288)
T PRK05416         62 IDVRSRPFFDDLPEALDELRE   82 (288)
T ss_pred             EccCchhhHHHHHHHHHHHHH
Confidence            888776544455555555544

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.12  E-value=0.00041  Score=50.65  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .=|+|+|++|+|||||+++|+..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34899999999999999999864

>PRK04195 replication factor C large subunit; Provisional

Probab=97.12  E-value=0.017  Score=48.74  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .--++|.|++|+||||+++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999664

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.11  E-value=0.00065  Score=50.46  Aligned_cols=27  Identities=30%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      +....-|+|+|++|+|||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            345567889999999999999999754

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.11  E-value=0.00045  Score=52.17  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=22.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      +..++++|+|++|+|||+|+..|+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999998754

This is thought to be an ATPase involved in viral DNA packaging [].

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.10  E-value=0.00045  Score=46.88  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998643

...

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.10  E-value=0.00047  Score=49.94  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.10  E-value=0.0005  Score=47.58  Aligned_cols=21  Identities=43%  Similarity=0.722  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.09  E-value=0.00067  Score=48.72  Aligned_cols=25  Identities=32%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKF   40 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~   40 (218)
                      =.+.|+|++|+|||||+|-+.+-..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            3689999999999999998876543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.09  E-value=0.00053  Score=49.55  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~   36 (218)
                      =.++|+|++|+|||||++.++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14530 adenylate kinase; Provisional

Probab=97.08  E-value=0.00052  Score=51.31  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      +|+|+|++||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998853

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.07  E-value=0.00053  Score=45.05  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy1169          17 KYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~   36 (218)
                      -++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            47999999999999999985

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.07  E-value=0.00047  Score=52.51  Aligned_cols=20  Identities=40%  Similarity=0.488  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      ++++||.|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999975

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.07  E-value=0.00061  Score=46.55  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFM   41 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~   41 (218)
                      -.++|+|++|+||||+++.+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999999765543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.06  E-value=0.0013  Score=48.52  Aligned_cols=19  Identities=42%  Similarity=0.622  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      .+++||+|+|||||++.|-
T Consensus        36 TAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            5899999999999999884

>PRK13949 shikimate kinase; Provisional

Probab=97.02  E-value=0.00068  Score=48.71  Aligned_cols=21  Identities=29%  Similarity=0.596  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      +|+|+|++|+||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.02  E-value=0.00057  Score=51.87  Aligned_cols=21  Identities=38%  Similarity=0.496  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -+.|+||.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999987

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.01  E-value=0.00074  Score=46.91  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .|.|+|+.|+|||||+..|+..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>PRK14532 adenylate kinase; Provisional

Probab=97.00  E-value=0.00062  Score=49.73  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+++|++|+||||+..+|..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.00  E-value=0.00088  Score=48.11  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ..-+.|+|++|+|||||+++++..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999754

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.99  E-value=0.00078  Score=53.40  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++++||+|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999997654

>KOG3347|consensus

Probab=96.98  E-value=0.00053  Score=47.40  Aligned_cols=25  Identities=28%  Similarity=0.394  Sum_probs=22.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +...+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            6678999999999999999999963

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.98  E-value=0.00068  Score=49.08  Aligned_cols=22  Identities=41%  Similarity=0.617  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -|+|+|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00625 shikimate kinase; Provisional

Probab=96.96  E-value=0.00074  Score=48.66  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      +|+++|.+|+||||+.+.|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.96  E-value=0.00072  Score=54.75  Aligned_cols=25  Identities=16%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      ...+..|+++|-.|+||||.+-.|.
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA  121 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLA  121 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHH
Confidence            4556789999999999999887663

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.95  E-value=0.00071  Score=50.46  Aligned_cols=21  Identities=43%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            379999999999999999965

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.95  E-value=0.00072  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-|+|+|++||||||+++.|..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999963

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK01889 GTPase RsgA; Reviewed

Probab=96.95  E-value=0.0015  Score=52.67  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -.++++|.+|+|||||++.|++..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            378999999999999999998643

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.95  E-value=0.00034  Score=52.47  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG   73 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (218)
                      ..++|+.|+||||.++.+++---+     +      ...+.+.++.+.-.+.|..|
T Consensus        31 ~GllG~NGAGKTTtfRmILglle~-----~------~G~I~~~g~~~~~~~~~rIG   75 (300)
T COG4152          31 FGLLGPNGAGKTTTFRMILGLLEP-----T------EGEITWNGGPLSQEIKNRIG   75 (300)
T ss_pred             EEeecCCCCCccchHHHHhccCCc-----c------CceEEEcCcchhhhhhhhcc
Confidence            468999999999999999874321     1      33445666666666666655

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.93  E-value=0.00084  Score=50.63  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+|+|++||||||+...|..
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999998854

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.93  E-value=0.0076  Score=46.57  Aligned_cols=86  Identities=21%  Similarity=0.216  Sum_probs=43.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      -|+|.|+.|+||||+++.++..-..... .....+- ..++..++ ..++.+-.- ....+.......++.---+|++-.
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~~~-~iitiEd-p~E~~~~~-~~q~~v~~~-~~~~~~~~l~~~lR~~PD~i~vgE  157 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTPEK-NIITVED-PVEYQIPG-INQVQVNEK-AGLTFARGLRAILRQDPDIIMVGE  157 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCCCC-eEEEECC-CceecCCC-ceEEEeCCc-CCcCHHHHHHHHhccCCCEEEecc
Confidence            3899999999999999998764322111 1111110 11111111 122222211 122355555555654334566667


Q ss_pred             CCChhhHHHH
Q psy1169          97 ITRRSTYNHL  106 (218)
Q Consensus        97 ~~~~~s~~~~  106 (218)
                      +.+.+++..+
T Consensus       158 iR~~e~a~~~  167 (264)
T cd01129         158 IRDAETAEIA  167 (264)
T ss_pred             CCCHHHHHHH
Confidence            7777765443

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.93  E-value=0.00081  Score=49.55  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |.|.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999664

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.92  E-value=0.00081  Score=47.70  Aligned_cols=21  Identities=29%  Similarity=0.437  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~   36 (218)
                      ++|+|.|.||+||||+.++|-
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999999986

>PRK02496 adk adenylate kinase; Provisional

Probab=96.91  E-value=0.001  Score=48.41  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+++|+|++|+||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.90  E-value=0.001  Score=46.05  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.90  E-value=0.00099  Score=48.65  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .-.++|+|++|+|||||++.+++.-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468999999999999999987643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.89  E-value=0.00094  Score=49.97  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57999999999999999997653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK14531 adenylate kinase; Provisional

Probab=96.88  E-value=0.00095  Score=48.61  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+|+++|+||+||||+.+.|..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998854

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.88  E-value=0.00089  Score=49.83  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999997643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-81
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-81
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-60
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-60
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-58
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-57
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-57
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-56
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		8e-46
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-43
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-43
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-43
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-43
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-42
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-42
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		3e-42
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-42
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-42
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-41
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-39
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-39
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-38
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-38
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-38
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-38
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		7e-38
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		7e-38
4fmc_B	171	Espg-Rab1 Complex Length = 171		8e-38
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-37
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-37
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-37
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-37
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-37
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-37
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-37
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		4e-37
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		9e-37
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-36
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-36
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-36
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-36
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-35
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		7e-35
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-34
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-34
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-34
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-33
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-33
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-32
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-32
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		6e-32
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-31
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-31
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-31
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-31
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-31
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-31
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-31
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		4e-31
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-31
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		4e-31
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-30
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-30
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-30
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-30
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-29
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-29
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		8e-29
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-28
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-28
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-28
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-28
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-28
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-28
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		6e-28
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-27
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-27
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		6e-27
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		7e-27
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-27
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-26
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-26
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		5e-26
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-25
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-25
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-25
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-25
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-25
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-25
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		6e-25
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		7e-25
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-24
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-24
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-24
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-24
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-24
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-24
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-24
1vg1_A	185	Gdp-bound Rab7 Length = 185		5e-24
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-19
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-19
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-19
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-18
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-18
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-18
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-17
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-17
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-17
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-17
1byu_A	216	Canine Gdp-Ran Length = 216		5e-17
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-17
2bku_A	177	Kap95p:rangtp Complex Length = 177		6e-17
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		8e-17
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		8e-17
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		9e-17
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-16
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-16
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-16
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-16
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-16
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		5e-16
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-16
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-16
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		7e-16
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-15
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-15
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-15
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		6e-15
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		7e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-15
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		9e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-14
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-14
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-14
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-14
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		7e-14
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-14
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		7e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-14
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-13
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-13
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-13
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-13
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-13
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		8e-13
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-12
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-12
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-12
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-12
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-12
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-12
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-12
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-12
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-12
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-12
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-12
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-12
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-12
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-12
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-12
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-12
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		4e-12
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		4e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		4e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-12
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-12
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		5e-12
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-12
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-12
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		6e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		6e-12
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		6e-12
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-12
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		7e-12
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		7e-12
1mh1_A	186	Small G-Protein Length = 186		7e-12
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		7e-12
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-12
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		8e-12
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		8e-12
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		9e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		9e-12
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-12
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		9e-12
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-11
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-11
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-11
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-11
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-11
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-11
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-11
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-11
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-11
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-11
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-11
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-11
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-11
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-11
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-11
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-11
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		5e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		6e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		6e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		6e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		6e-11
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		6e-11
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-10
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-10
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-10
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-10
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-10
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-10
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-10
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-10
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-10
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-10
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-10
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		4e-10
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-10
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-10
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-09
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-09
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		5e-09
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-08
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-08
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-08
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-08
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-08
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		4e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		4e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		7e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		7e-08
2kb0_A	178	Cdc42(T35a) Length = 178		8e-08
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-07
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-07
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-07
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-07
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		3e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		5e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		6e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		8e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		9e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		9e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-04
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		1e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-04
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		2e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		2e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-04
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-04
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		6e-04
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		7e-04
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		7e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		9e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		9e-04

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/158 (87%), Positives = 146/158 (92%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct: 22  GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 81
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 141
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQN
Sbjct: 142 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  297 bits (760), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 139/160 (86%), Positives = 147/160 (91%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQ RFRAVT
Sbjct: 37  GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVT 96
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           RSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK DLE  RDV Y+
Sbjct: 97  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 156
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQNI+
Sbjct: 157 EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 130/165 (78%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  G GKSCLLHQF E KF  D  HTIGVEFG+R++ V G+ +KLQIWDTAGQERFR+VT
Sbjct: 32  GSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT 91
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           RSYYRGAAGAL+VYDIT R TYN L++WLTD + L +PN V+ L GNK DL+  R+V + 
Sbjct: 92  RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFL 151
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN 186
           EA +FA+EN+L+F+E SA+TGENVE+AFL+ A+ I   I  G+L+
Sbjct: 152 EASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 105/165 (63%), Positives = 133/165 (80%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWDTAGQERFR+VT
Sbjct: 17  GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           RSYYRGAAGAL+VYDIT R TYN L++WLTD + L + N VI L GNK DL+  R+V + 
Sbjct: 77  RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL 136
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN 186
           EA +FA+EN+L+F+E SA+TGENVE+AF++ A+KI   I+ G+L+
Sbjct: 137 EASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  220 bits (560), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 127/155 (81%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWDTAGQERFR+VT
Sbjct: 18  GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT 77
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           RSYYRGAAGAL+VYDIT R TYN L++WLTD + L + N VI L GNK DL+  R+V + 
Sbjct: 78  RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL 137
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           EA +FA+EN+L+F+E SA+TGE+VE+AF++ A+KI
Sbjct: 138 EASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 128/162 (79%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL QFT+++F P    TIGVEFG R++ + G++IKLQIWDTAGQE FR++T
Sbjct: 28  GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT 87
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           RSYYRGAAGAL+VYDITRR T+NHL+SWL D +  ++ N VI LIGNK DLE  RDV+ +
Sbjct: 88  RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKRE 147
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
           E + FA E+ LIF+E SA T  NVE+AF+ TAK+IY+ I+ G
Sbjct: 148 EGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 126/155 (81%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWDTAG ERFR+VT
Sbjct: 15  GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVT 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           RSYYRGAAGAL+VYDIT R TYN L++WLTD + L + N VI L GNK DL+  R+V + 
Sbjct: 75  RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           EA +FA+EN+L+F+E SA+TGE+VE+AF++ A+KI
Sbjct: 135 EASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 125/157 (79%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL QFT+++F P    TIGVEFG R+I + G++IKLQIWDTAGQE FR++T
Sbjct: 17  GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           RSYYRGAAGAL+VYDITRR T+NHL++WL D +  +N N VI LIGNK DLE  R+V+ +
Sbjct: 77  RSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKE 136
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           E + FA E+ LIF+E SA T  NVE+AF+ TAK+IY+
Sbjct: 137 EGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  179 bits (455), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 113/159 (71%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT+ +F  D   TIGVEF TR +E+ G++IK QIWDTAGQER+RA+T
Sbjct: 20  GDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT 79
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI++ S+Y + + WL++ +   + N  + LIGNK DL   R V  +
Sbjct: 80  SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTE 139
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           E+K FA+EN L+F E SA+  ENV++AF E    IYQ +
Sbjct: 140 ESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 111/164 (67%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAGQER+R +T
Sbjct: 12  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK DL   R V  D
Sbjct: 72  SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           EA+ FAE+N+L F+E SA+   NVE+AF     +IY+ +   ++
Sbjct: 132 EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 107/157 (68%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAGQER+RA+T
Sbjct: 27  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAIT 86
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK DL   R V  D
Sbjct: 87  SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 146
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           EA+ FAE+N L F+E SA+   NVE AF     +IY+
Sbjct: 147 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 109/159 (68%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT  +F  +   TIGVEF TR IEV  +KIK QIWDTAG ER+RA+T
Sbjct: 17  GDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAIT 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI++ S+Y + + WLT+ +   + N  + LIGNK DL   R V  D
Sbjct: 77  SAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTD 136
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           EAK FA EN ++F E SA+  +NV++AF E    I+Q +
Sbjct: 137 EAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMV 175

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 106/156 (67%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAGQER+RA+T
Sbjct: 36  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAIT 95
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK DL   R V  D
Sbjct: 96  SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 155
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
           EA+ FAE+N L F+E SA+   NVE AF     +IY
Sbjct: 156 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 5/197 (2%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 15  GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRG+ G ++VYD+T + ++N +  WL +         +  L+GNK DL+  R V YD
Sbjct: 75  SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
            AK+FA+ N + F+E SA+   NVE AFL  A++I +++    LN        Q KE  G
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET-----TQKKEDKG 189
Query: 202 PASLGDSSSSDKPNCSC 218
             +L   S ++   C C
Sbjct: 190 NVNLKGQSLTNTGGCCC 206

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 106/157 (67%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 15  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK DL   R V  D
Sbjct: 75  SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           EA+ FAE+N L F+E SA+   NVE AF     +IY+
Sbjct: 135 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 105/156 (67%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 36  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 95
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK DL   R V  D
Sbjct: 96  SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTD 155
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
           EA+ FAE+N L F+E SA+   NVE AF     +IY
Sbjct: 156 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 105/156 (67%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 12  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK DL   R V  D
Sbjct: 72  SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTD 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
           EA+ FAE+N L F+E SA+   NVE AF     +IY
Sbjct: 132 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 105/156 (67%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 18  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 77
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK DL   R V  D
Sbjct: 78  SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTD 137
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
           EA+ FAE+N L F+E SA+   NVE AF     +IY
Sbjct: 138 EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 119/197 (60%), Gaps = 5/197 (2%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 15  GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRG+ G ++VYD+T + ++N +  WL +         +  L+GNK DL+  R V YD
Sbjct: 75  SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQHKERGG 201
            AK+FA+ N + F+E SA+   NVE AFL  A++I +++    LN        Q KE  G
Sbjct: 135 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET-----TQKKEDKG 189
Query: 202 PASLGDSSSSDKPNCSC 218
             +L   S ++     C
Sbjct: 190 NVNLKGQSLTNTGGGCC 206

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 104/155 (67%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 28  GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 87
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRG+ G ++VYD+T + ++N +  WL +         +  L+GNK DL+  R V YD
Sbjct: 88  SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD 147
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+ N + F+E SA+   NVE AFL  A++I
Sbjct: 148 VAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI-KLQIWDTAGQERFRAV 80
           GD GVGKS LL +FT  +F  +   TIGVEF T+ I++   KI K QIWDTAGQER+RA+
Sbjct: 14  GDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAI 73
Query: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
           T +YYRGA GAL+VYDIT+++++ ++  WL + ++  + N VI L+GNK DL+  R +  
Sbjct: 74  TSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVIND 133
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           ++A ++A++  L F+E SA+   NVE AF +   +IY N++  K
Sbjct: 134 NDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY-NVRQKK 176

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 103/159 (64%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ GVGK+ LL +FT  +F  D   TIGVEF TR + +    +K QIWDTAG ER+RA+T
Sbjct: 17  GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+V+D+T+  TY  +  WL +  +      V+ L+GNK DL  +R+V  +
Sbjct: 77  SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTE 136
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           EA+ FAE N L+F+E SA+   NVE AF    K+I+  +
Sbjct: 137 EARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 175

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 103/159 (64%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ GVGK+ LL +FT  +F  D   TIGVEF TR + +    +K QIWDTAG ER+RA+T
Sbjct: 32  GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA GAL+V+D+T+  TY  +  WL +  +      V+ L+GNK DL  +R+V  +
Sbjct: 92  SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTE 151
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           EA+ FAE N L+F+E SA+   NVE AF    K+I+  +
Sbjct: 152 EARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 107/174 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 23  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL   + V Y 
Sbjct: 83  SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 142
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQ 195
            AK+FA+   + F+E SA    NVEQ+F+  A +I + +  G       +S V+
Sbjct: 143 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 196

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 27  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 86
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G ++VYD+T   T+ ++  W        N    + L+GNK D+E +R V  D
Sbjct: 87  TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTAD 145
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           + +  A+E  + F+E+SA   +NV + F   AK I + I   KL
Sbjct: 146 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKL 189

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 100/155 (64%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 6   GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 65
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL   + V Y 
Sbjct: 66  SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 125
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQ+F+  A +I
Sbjct: 126 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 100/155 (64%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 13  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL   + V Y 
Sbjct: 73  SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQ+F+  A +I
Sbjct: 133 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 100/155 (64%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 13  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL   + V Y 
Sbjct: 73  SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQ+F+  A +I
Sbjct: 133 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 100/155 (64%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 32  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 91
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL   + V Y 
Sbjct: 92  SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 151
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQ+F+  A +I
Sbjct: 152 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 109/169 (64%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ GVGK+CL+ +FT+  F P    TIGV+F  + +E++GEK+KLQIWDTAGQERFR++T
Sbjct: 33  GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT 92
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           +SYYR A   ++ YDIT   ++  L  WL + +   +   +  L+GNK+DL   R+V   
Sbjct: 93  QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ 152
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
            A++F+E  D+ ++E SA   +NVE+ FL+ A ++    +   L  N++
Sbjct: 153 RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVS 201

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 106/158 (67%), Gaps = 2/158 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+ GVGKS LL +FT+  F P+   TIGV+F  + I V G K KL IWDTAGQERFR +T
Sbjct: 22  GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 81
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDLEGSRDVRY 140
            SYYRGA G ++VYD+TRR T+  L +WL + +     N ++  L+GNK+D E +R+V  
Sbjct: 82  PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE-NREVDR 140
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           +E  KFA ++  +F+EASA T + V+ AF E  +KI Q
Sbjct: 141 NEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQIWDTAGQERFR +T
Sbjct: 10  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G ++VYDIT   T+ ++  W        N    + L+GNK D+E +R V  D
Sbjct: 70  TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTAD 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           + +  A+E  + F+E+SA   +NV + F   AK I + I
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 100/155 (64%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGK+CLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 23  GDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL   + V Y 
Sbjct: 83  SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 142
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQ+F+  A +I
Sbjct: 143 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 99/155 (63%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 40  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 99
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL   + V Y 
Sbjct: 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 159
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQ+F   A +I
Sbjct: 160 TAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQIWDTAGQERFR +T
Sbjct: 10  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G ++VYDIT   T+ ++  W        N    + L+GNK D E +R V  D
Sbjct: 70  TAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE-TRVVTAD 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           + +  A+E  + F+E+SA   +NV + F   AK I + I
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 14  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 73
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G ++VYD+T   T+ ++  W        N    + L+GNK D+E +R V  D
Sbjct: 74  TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTAD 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           + +  A+E  + F+E+SA   +NV + F   AK I + I
Sbjct: 133 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 10  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G ++VYD+T   T+ ++  W        N    + L+GNK D E +R V  D
Sbjct: 70  TAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE-TRVVTAD 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           + +  A+E  + F+E+SA   +NV + F   AK I + I
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 99/155 (63%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 15  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+G K DL   + V Y 
Sbjct: 75  SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYT 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQ+F+  A +I
Sbjct: 135 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 98/155 (63%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 16  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + +Y ++  WL +     + N    L+GNK DL   + V   
Sbjct: 76  SSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNT 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQAF+  A +I
Sbjct: 136 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+C++ +F    F      TIGV+F  + +E+ G+++KLQIWDTAGQERFR +T
Sbjct: 36  GDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTIT 95
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           +SYYR A GA++ YDIT+RS++  +  W+ D +     N V  LIGNK DL   R+V   
Sbjct: 96  QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLA 155
Query: 142 EAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
           EA+  AE  D++  +E SA    NVE+AFL  A ++
Sbjct: 156 EAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 98/155 (63%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 16  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T + +Y ++  WL +     + N    L+GNK DL   + V   
Sbjct: 76  SSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNT 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            AK+FA+   + F+E SA    NVEQAF+  A +I
Sbjct: 136 TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 99/160 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R I +  + +KLQIWDTAGQERFR +T
Sbjct: 16  GDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTIT 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SYYRGA G ++VYD+T R +++++  W+ +       N    L+GNK DL   R V  D
Sbjct: 76  SSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSD 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           E ++ A+ + + F+E SA    NVEQAF   A +I + ++
Sbjct: 136 EGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80
           GD GVGK+CLL +F +  F+      T+G++F  ++++V G K+KLQ+WDTAGQERFR+V
Sbjct: 17  GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV 76
Query: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
           T +YYR A   L++YD+T +++++++ +WLT+       +  + L+GNK+D    R V+ 
Sbjct: 77  THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR 136
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++ +K A+E  L F+E SA TG NV+ AF   AK++
Sbjct: 137 EDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 99/155 (63%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGK+C+L +F+E  F      TIG++F  R IE+ G++IKLQIWDTAGQERFR +T
Sbjct: 15  GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G ++VYDIT   +++++ +W+ + +   + +    ++GNK D+   R V  +
Sbjct: 75  TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
             +K A +  + F+E SA    NVE AF   A+ I
Sbjct: 135 RGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGK+ L+ +FT+  F   C  T+GV+F  + +E+ G+KI+LQIWDTAGQERF ++T
Sbjct: 33  GSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 92
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYR A G ++VYDIT++ T++ L  W+       + +  + L+GNK+D E  R++   
Sbjct: 93  SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQ 152
Query: 142 EAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           + +KFA++   + F EASA    NV++ FL+    I + +
Sbjct: 153 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 99/155 (63%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGK+C+L +F+E  F      TIG++F  R IE+ G++IKLQIWDTAGQERFR +T
Sbjct: 13  GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G ++VYDIT   +++++ +W+ + +   + +    ++GNK D+   R V  +
Sbjct: 73  TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
             +K A +  + F+E SA    NVE AF   A+ I
Sbjct: 133 RGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 97/155 (62%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS ++ +F E  F P+   TIG  F T+ ++   E  K  IWDTAGQERFRA+ 
Sbjct: 12  GDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALA 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRG+A A++VYDIT+  T++ L +W+ + +    P+ V+ + GNK DL   R+V   
Sbjct: 72  PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +AK +A+    IFVE SA    N+ + F+E +++I
Sbjct: 132 DAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 101/155 (65%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++ 
Sbjct: 19  GDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGAA A++V+D+T ++++     W+ + +   NPN V+ L GNK DL  +R V  +
Sbjct: 79  PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAE 138
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +A+ +A+EN L F+E SA T  NV++ F E A+++
Sbjct: 139 DAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 96/155 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS ++ +F E  F P+   TIG  F T+ ++   E  K  IWDTAG ERFRA+ 
Sbjct: 13  GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRG+A A++VYDIT+  T++ L +W+ + +    P+ V+ + GNK DL   R+V   
Sbjct: 73  PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +AK +A+    IFVE SA    N+ + F+E +++I
Sbjct: 133 DAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 96/155 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 15  GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLA 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT + T+    +W+ + +   +P+ VI L GNK DL   R V Y+
Sbjct: 75  PMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYE 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           EA+ +A++N L+F+E SA T  NV   FL  AKK+
Sbjct: 135 EAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 95/155 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 10  GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   T+    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 70  PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 129
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           EA+ +A++N L+F+E SA T  NV + F+  AKK+
Sbjct: 130 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 14  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 73
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 74  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 134 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 95/158 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 14  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 73
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 74  PXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EA+ +A++N L+F E SA T  NV + F   AKK+ +N
Sbjct: 134 EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 73  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 94/155 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TI   F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 12  GESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   T+    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 72  PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           EA+ +A++N L+F+E SA T  NV + F+  AKK+
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 94/155 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAG ER+ ++ 
Sbjct: 12  GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLA 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   T+    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 72  PMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQ 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           EA+ +A++N L+F+E SA T  NV + F+  AKK+
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 94/155 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAG ER+ ++ 
Sbjct: 12  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLA 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   R V + 
Sbjct: 72  PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           EA+ +A++N L+F+E SA T  NV + F+  AKK+
Sbjct: 132 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+  L ++ +  F P    T+G++F  + +  H ++IKLQIWDTAGQER+R +T
Sbjct: 29  GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT 88
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G L++YDI  + ++  +  W T  K  +  N  + L+GNK DLE  R V  +
Sbjct: 89  TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE 148
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAF 169
           + ++ A++    F EASA    NV+Q F
Sbjct: 149 DGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+  L ++ +  F P    T+G++F  + +  H +++KLQIWDTAGQER+R +T
Sbjct: 30  GNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT 89
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G +++YDIT   ++N +  W T  K  +  N  + L+GNK D+E  R V  +
Sbjct: 90  TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTE 149
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
           + +  AE+    F EASA    +V QAF      I   + D
Sbjct: 150 KGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  126 bits (317), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 89/148 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+  L ++ +  F P    T+G++F  + I  + ++IKLQIWDTAGQER+R +T
Sbjct: 12  GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTIT 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G +++YDIT   ++N +  W T  K  +  N  + L+GNK D+E  R V  +
Sbjct: 72  TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 131
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAF 169
             ++ A+     F EASA    NV+Q F
Sbjct: 132 RGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS LL +F +  F      TIGV+F  R +E++GEK+KLQIWDTAGQERFR +T
Sbjct: 16  GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRG  G ++VYD+T   ++ ++  WL +  N    +    L+GNK D    + V  +
Sbjct: 76  STYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPERKVVETE 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAF 169
           +A KFA +  +   E SA    NVE+ F
Sbjct: 135 DAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 75/111 (67%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 5   GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 64
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
            SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GNK DL
Sbjct: 65  SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 93/152 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ +F    F      TIG++F ++ + +    I+LQ+WDTAGQERFR++ 
Sbjct: 13  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SY R +A A++VYDIT  +++   + W+ D +     + +I L+GNK DL   R V  +
Sbjct: 73  PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETA 173
           E ++ A+E +++F+E SA  G NV+Q F   A
Sbjct: 133 EGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 86/148 (58%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+  L ++ +  F P    T+G++F  + I  + ++IKLQIWDTAG ER+R +T
Sbjct: 15  GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            +YYRGA G ++ YDIT   ++N +  W T  K  +  N  + L+GNK D E  R V  +
Sbjct: 75  TAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSE 134
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAF 169
             ++ A+     F EASA    NV+Q F
Sbjct: 135 RGRQLADHLGFEFFEASAKDNINVKQTF 162

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 95/155 (61%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ ++ +F    F  +   TIG++F ++ + +    ++LQ+WDTAGQERFR++ 
Sbjct: 8   GEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI 67
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SY R +A A++VYDIT R ++ + + W+ D  N    + +I L+GNK DL   R V Y+
Sbjct: 68  PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYE 127
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           E  + A+E +  F E SA  G N++  F +TA K+
Sbjct: 128 EGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS ++ +F    F  +   TIG  F T+ + ++   +K +IWDTAGQERF ++ 
Sbjct: 10  GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE---GSRDV 138
             YYR A  AL+VYD+T+  ++     W+ +     + + +I L+GNK+D     G R V
Sbjct: 70  PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKV 129
Query: 139 RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
             +E +K AEE  L+F E SA TGENV   FL   +KI
Sbjct: 130 AREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 94/157 (59%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAGQERFR++ 
Sbjct: 9   GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SY R +  A++VYDIT  +++   S W+ D +     + +I L+GNK DL   R +  +
Sbjct: 69  PSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIE 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           E ++ A+E  ++F+E SA TG NV+Q F   A  + +
Sbjct: 129 EGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 94/155 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAGQERFR++ 
Sbjct: 21  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SY R +  A++VYDIT  ++++  S W+ D +     + +I L+GNK DL   R V  +
Sbjct: 81  PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 140
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           E ++ A+E +++F+E SA  G NV+Q F   A  +
Sbjct: 141 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 91/155 (58%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS ++ +F +  F  +   TIG  F T+ +    E  K  IWDTAGQERF ++ 
Sbjct: 30  GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA 89
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYRG+A A++VYDIT++ ++  L  W+ + K     N V+ + GNK DL   R+V   
Sbjct: 90  PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK 149
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +AK++AE    I VE SA    N+E+ F   +++I
Sbjct: 150 DAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 93/155 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ +F    F      TIG++F ++ + +    I+LQ+WDTAG ERFR++ 
Sbjct: 20  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI 79
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SY R +A A++VYDIT  +++   + W+ D +     + +I L+GNK DL   R V  +
Sbjct: 80  PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 139
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           E ++ A+E +++F+E SA  G NV+Q F   A  +
Sbjct: 140 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAGQERFR++ 
Sbjct: 8   GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 67
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SY R +  A++VYDIT  +++   + W+ D +     + +I L+GNK DL   R V  +
Sbjct: 68  PSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 127
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETA 173
           E ++ A+E +++F+E SA  G NV+Q F   A
Sbjct: 128 EGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 100/158 (63%), Gaps = 11/158 (6%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------KIKLQIWDT 71
           GD GVGK+  L+++T+ KF P    T+G++F  + +  + +          K+ LQ+WDT
Sbjct: 32  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDT 91
Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
           AGQERFR++T +++R A G L+++D+T + ++ ++ +W++  + N    N  I LIGNK 
Sbjct: 92  AGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 151
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
           DL   R+V   +A++ A++  + + E SA TG+NVE+A
Sbjct: 152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV 80
           GD  VGK+CL ++F   +F      TIGV+F  R +++ GE+IK+Q+WDTAGQERFR ++
Sbjct: 27  GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 86
Query: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDLEGSRDVR 139
            + YYR     + VYD+T  ++++ L +W+ + K     N +   L+GNK DL  +  V 
Sbjct: 87  VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP 146
Query: 140 YDEAKKFAEENDLIFVEASAMT---GENVEQAFLETAKKI 176
            D A+KFA+ + +   E SA      ++VE  F+  A K+
Sbjct: 147 TDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 91/152 (59%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAG ERFR++ 
Sbjct: 13  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SY R +  A++VYDIT  +++   + W+ D +     + +I L+GNK DL   R V  +
Sbjct: 73  PSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETA 173
           E ++ A+E +++F+E SA  G NV+Q F   A
Sbjct: 133 EGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 92/155 (59%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAG ERFR++ 
Sbjct: 23  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 82
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
            SY R +  A++VYDIT  +++   + W+ D +     + +I L+GNK DL   R V  +
Sbjct: 83  PSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 142
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           E ++ A+E +++F+E SA  G NV+Q F   A  +
Sbjct: 143 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 117/208 (56%), Gaps = 16/208 (7%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 71
           GD GVGK+  L+++T+ KF P    T+G++F  +  + +  G         K+ LQ+WDT
Sbjct: 18  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
           AG ERFR++T +++R A G L+++D+T + ++ ++ +W++  + N    N  I LIGNK 
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           DL   R+V   +A++ AE+  + + E SA TG+NVE++ +ET   +       ++   + 
Sbjct: 138 DLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIMK----RMEKCVE 192
Query: 191 ESGVQHKERGGPASLGDSSSSDKPNCSC 218
           ++ V     GG +   D     +  C+C
Sbjct: 193 KTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 11/158 (6%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 71
           GD GVGK+  L+++T+ KF P    T+G++F  +  + +  G         K+ LQ+WDT
Sbjct: 18  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
           AG ERFR++T +++R A G L+++D+T + ++ ++ +W++  + N    N  I LIGNK 
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKA 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
           DL   R+V   +A++ AE+  + + E SA TG+NVE++
Sbjct: 138 DLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV 80
           GD  VGK+CL ++F   +F      TIGV+F  R +++ GE+IK+Q+WDTAGQERFR ++
Sbjct: 36  GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 95
Query: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMDLEGSRDVR 139
            + YYR     + VYD T  ++++ L +W+ + K     N +   L+GNK DL  +  V 
Sbjct: 96  VQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP 155
Query: 140 YDEAKKFAEENDLIFVEASAMT---GENVEQAFLETAKKI 176
            D A+KFA+ +     E SA      ++VE  F   A K+
Sbjct: 156 TDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGKS  L +  + +F  +   T+GV+F  + + V GE+  LQ+WDTAGQERFR++ 
Sbjct: 35  GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA 94
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL------EGS 135
           +SY+R A G L++YD+T   ++ ++  W+   ++  +    I L+GNK D+      EG 
Sbjct: 95  KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQ 154
Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           + V     +K A     +F E SA  G N+ +A L  A+++
Sbjct: 155 KCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 97/158 (61%), Gaps = 11/158 (6%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 71
           GD GVGK+  L+++T+ KF P    T+G++F  +  + +  G         K+ LQ+WDT
Sbjct: 18  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
           AG ERFR++T +++R A G L+ +D+T + ++ ++ +W +  + N    N  I LIGNK 
Sbjct: 78  AGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKA 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
           DL   R+V   +A++ AE+  + + E SA TG+NVE++
Sbjct: 138 DLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 97/158 (61%), Gaps = 11/158 (6%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 71
           GD GVGK+  L+++T+ KF P    T+G++F  +  + +  G         K+ LQ+WDT
Sbjct: 18  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
           AG ERFR++T +++R A G L+ +D+T + ++ ++ +W +  + N    N  I LIGNK 
Sbjct: 78  AGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKA 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
           DL   R+V   +A++ AE+  + + E SA TG+NVE++
Sbjct: 138 DLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 91/157 (57%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ ++ E KF      T+G  F T+ + + G+++ L IWDTAGQERF A+ 
Sbjct: 13  GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYR + GA++VYDIT   ++  + +W+ + + +      + ++GNK+DLE  R V   
Sbjct: 73  PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           EA+ +AE         SA   + +E+ FL+  K++ +
Sbjct: 133 EAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS L++++   KF     HTIGVEF  R +EV G  + LQIWDTAGQERF+++ 
Sbjct: 14  GDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLR 73
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTD---TKNLTNPNTVIFLI-GNKMDLEGSRD 137
             +YRGA   L+ + +  R ++ +L +W  +     ++ +P    F++ GNK+D E  R 
Sbjct: 74  TPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE-DRQ 132
Query: 138 VRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
           V  +EA+ +  EN D  ++E SA    NV  AF E  +++
Sbjct: 133 VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWDTAGQERFR++ 
Sbjct: 18  GDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 77
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLI-GNKMDLEGSRD 137
             +YRG+   L+ + +    ++ +LS+W        ++  P +  F+I GNK D++  R 
Sbjct: 78  TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIK-ERQ 136
Query: 138 VRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
           V  +EA+ + ++N D  + E SA    NV  AF E  ++I
Sbjct: 137 VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWDTAGQERFR++ 
Sbjct: 14  GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 73
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLI-GNKMDLEGSRD 137
             +YRG+   L+ + +    ++ +LS+W        ++  P +  F+I GNK+D+   R 
Sbjct: 74  TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI-SERQ 132
Query: 138 VRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
           V  +EA+ +  +N D  + E SA    NV  AF E  +++
Sbjct: 133 VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWDTAGQERFR++ 
Sbjct: 16  GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPNTVIFLI-GNKMDLEGSRD 137
             +YRG+   L+ + +    ++ +LS+W        ++  P +  F+I GNK+D+   R 
Sbjct: 76  TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI-SERQ 134
Query: 138 VRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKI 176
           V  +EA+ +  +N D  + E SA    NV  AF E  +++
Sbjct: 135 VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 96/158 (60%), Gaps = 11/158 (6%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------GEKIKLQIWDT 71
           GD GVGK+ +L+Q+T+ KF      T+G++F  + +             G++I LQ+WDT
Sbjct: 18  GDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDT 77
Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKM 130
           AG ERFR++T +++R A G L+++D+T   ++ ++ +W++  + +  + N  I L GNK 
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137
Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA 168
           DLE  R V+ +EA++ AE+  + + E SA  G N+  A
Sbjct: 138 DLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 7/164 (4%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK-LQIWDTAGQERFRAV 80
           GD GVGK+ L+H++   K+      TIG +F T+ + V G+K+  +Q+WDTAGQERF+++
Sbjct: 15  GDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL 74
Query: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT---KNLTNPNTVIFLI-GNKMDLEGSR 136
             ++YRGA   ++VYD+T  S++ ++ SW  +     N+ +P T  F+I GNK+D E S+
Sbjct: 75  GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK 134
Query: 137 DVRYDE-AKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            +  ++ A++ A+   D+     SA    NV+ AF E A+   Q
Sbjct: 135 KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 20/205 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAGQERF+++ 
Sbjct: 15  GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGSRD 137
            ++YRGA   ++V+D+T  +T+  L SW  +     +P    N    ++GNK+D E +R 
Sbjct: 75  VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFE-NRQ 133
Query: 138 VRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQ- 195
           V    A+ +   +N++ + E SA    NVEQAF   A+           NA   E+ V+ 
Sbjct: 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR-----------NALKQETEVEL 182
Query: 196 HKERGGPASL--GDSSSSDKPNCSC 218
           + E   P  L   D + +   +CSC
Sbjct: 183 YNEFPEPIKLDKNDRAKASAESCSC 207

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 111/205 (54%), Gaps = 20/205 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAGQERF+++ 
Sbjct: 15  GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGSRD 137
            ++YRGA   ++V+D+T  +T+  L SW  +     +P    N    ++GNK+DLE +R 
Sbjct: 75  VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQ 133
Query: 138 VRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQ- 195
           V    A+ +   +N++ + E SA    NVEQAF   A+           NA   E+ V+ 
Sbjct: 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR-----------NALKQETEVEL 182
Query: 196 HKERGGPASL--GDSSSSDKPNCSC 218
           + E   P  L   + + +   +CSC
Sbjct: 183 YNEFPEPIKLDKNERAKASAESCSC 207

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 90/157 (57%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ ++ E KF      T+   F T+ + + G+++ L IWDTAGQERF A+ 
Sbjct: 27  GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 86
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYR + GA++VYDIT   ++  + +W+ + + +      + ++GNK+DLE  R V   
Sbjct: 87  PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 146
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           EA+ +AE         SA   + +E+ FL+  K++ +
Sbjct: 147 EAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 90/157 (57%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGK+ L+ ++ E KF      T+   F T+ + + G+++ L IWDTAGQERF A+ 
Sbjct: 13  GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YYR + GA++VYDIT   ++  + +W+ + + +      + ++GNK+DLE  R V   
Sbjct: 73  PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           EA+ +AE         SA   + +E+ FL+  K++ +
Sbjct: 133 EAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 20/205 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAG ERF+++ 
Sbjct: 15  GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLG 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGSRD 137
            ++YRGA   ++V+D+T  +T+  L SW  +     +P    N    ++GNK+DLE +R 
Sbjct: 75  VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQ 133
Query: 138 VRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGVQ- 195
           V    A+ +   +N++ + E SA    NVEQAF   A+           NA   E+ V+ 
Sbjct: 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR-----------NALKQETEVEL 182
Query: 196 HKERGGPASL--GDSSSSDKPNCSC 218
           + E   P  L   D + +   +CSC
Sbjct: 183 YNEFPEPIKLDKNDRAKASAESCSC 207

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAGQERF+++ 
Sbjct: 15  GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLIGNKMDLEGSRD 137
            ++YRGA   ++V+D+T  +T+  L SW  +     +P    N    ++GNK+DLE +R 
Sbjct: 75  VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQ 133
Query: 138 VRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAK 174
           V    A+ +   +N++ + E SA    NVEQAF   A+
Sbjct: 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 40/196 (20%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV---------------------- 59
           G+  VGKS ++ + T+  F  +   TIG  F T ++ +                      
Sbjct: 14  GESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSIND 73
Query: 60  ---------HGE------KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 104
                    H         IK  IWDTAGQER+ ++   YYRGA  A++V+DI+  +T +
Sbjct: 74  DNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLD 133
Query: 105 HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN 164
              +W+   K   + N +I L+ NK+D +    V   E +K+A++N+L+F++ SA TG N
Sbjct: 134 RAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190
Query: 165 VEQAFLETAKKIYQNI 180
           ++  F   A++IY+NI
Sbjct: 191 IKNIFYMLAEEIYKNI 206

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G+  VGKS ++ ++ +  F  D   TIGV+F  R I+V+ E ++L +WDTAGQE F A+T
Sbjct: 12  GNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSW----LTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
           ++YYRGA   ++V+  T R ++  +SSW    + +  ++        L+ NK+DL     
Sbjct: 72  KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-----LVQNKIDLLDDSC 126
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           ++ +EA+  A+   L F   S     NV + F   A+K  Q
Sbjct: 127 IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAGQE + A+ 
Sbjct: 21  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 79
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
            +Y+R   G L V+ IT   ++   + +      +     V FL +GNK DLE  R V  
Sbjct: 80  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 139
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +EAK  AE+ ++ +VE SA T  NV++ F +  ++I
Sbjct: 140 EEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAGQE + A+ 
Sbjct: 25  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 83
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
            +Y+R   G L V+ IT   ++   + +      +     V FL +GNK DLE  R V  
Sbjct: 84  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 143
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +EAK  AE+ ++ +VE SA T  NV++ F +  ++I
Sbjct: 144 EEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAGQE + A+ 
Sbjct: 13  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
            +Y+R   G L V+ IT   ++   + +      +     V FL +GNK DLE  R V  
Sbjct: 72  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 131
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +EAK  AE+ ++ +VE SA T  NV++ F +  ++I
Sbjct: 132 EEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAGQE + A+ 
Sbjct: 11  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
            +Y+R   G L V+ IT   ++   + +      +     V FL +GNK DLE  R V  
Sbjct: 70  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 129
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +EAK  A++ ++ +VE SA T  NV++ F +  ++I
Sbjct: 130 EEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAG E + A+ 
Sbjct: 13  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEGSRDVRY 140
            +Y+R   G L V+ IT   ++   + +      +     V FL +GNK DLE  R V  
Sbjct: 72  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 131
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +EAK  AE+ ++ +VE SA T  NV++ F +  ++I
Sbjct: 132 EEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRAV 80
           GD   GK+ L   F ++ F      TIG++F  R I + G   + LQIWD  GQ     +
Sbjct: 13  GDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72
Query: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN---TVIFLIGNKMDLEGSRD 137
              Y  GA G L+VYDIT   ++ +L  W T  K ++  +    ++ L+GNK+DLE  R 
Sbjct: 73  LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT 132
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++ ++  +F +EN       SA TG++V   F + A +I
Sbjct: 133 IKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 3/173 (1%)
Query: 4   MSSSGQXXXXXXXXXXXXGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           M+S+ Q            GD G GK+  + +    +F      T+GVE    +   +   
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           IK  +WDTAGQE+F  +   YY  A  A++++D+T R TY ++ +W  D   +   N  I
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPI 122
Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            L GNK+D++  R V+  ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 123 VLCGNKVDIK-DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAG E + A+ 
Sbjct: 14  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI--FLIGNKMDLEGSRDVR 139
            +Y+R   G L+V+ IT   ++   + +      +      I   ++GNK DLE  R V 
Sbjct: 73  DNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVP 132
Query: 140 YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            +EA+  AEE  + +VE SA T  NV++ F +  ++I
Sbjct: 133 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  QF +  F+ D   TI   + T+I  V G   +L I DTAGQE F A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L+V+ I  R ++N +    T    + + +   + L+GNK DLE  R V   EA  F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
              + + + EASA    NV++AF +  + +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAG E + A+ 
Sbjct: 10  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI--FLIGNKMDLEGSRDVR 139
            +Y+R   G L+V+ IT   ++   + +      +      I   ++GNK DLE  R V 
Sbjct: 69  DNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVP 128
Query: 140 YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            +EA+  AEE  + +VE SA T  NV++ F +  ++I
Sbjct: 129 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 22  GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77
           GD G GK+  + +      E+K++P    T+GVE    +   +   IK  +WDTAGQE+F
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVP----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 78  RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
             +   YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R 
Sbjct: 73  GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRK 130
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           V+  ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 131 VK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)
Query: 4   MSSSGQXXXXXXXXXXXXGDMGVGKSCLLHQF----TEQKFMPDCPHTIGVEFGTRIIEV 59
           M+S+ Q            GD G GK+  + +     +E+K++     T+GVE    +   
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYV----ATLGVEVHPLVFHT 59
Query: 60  HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP 119
           +   IK  +WDTAGQE+F  +   YY  A  A++++D+T R TY ++ +W  D   +   
Sbjct: 60  NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE- 118
Query: 120 NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           N  I L GNK+D++  R V+  ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 119 NIPIVLCGNKVDIK-DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 22  GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77
           GD G GK+  + +      E+K++P    T+GVE    +   +   IK  +WDTAGQE+F
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVP----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 78  RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
             +   YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R 
Sbjct: 73  GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRK 130
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           V+  ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 131 VK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 77  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 77  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 77  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 10  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 70  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 126
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 127 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLE 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 77  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G +GVGKS L  QF +  F+     TI   +  ++ EV  ++  L+I DTAG E+F A+ 
Sbjct: 12  GSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMR 70
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
             Y +   G  +VY IT +ST+N L         + + + V + L+GNK DLE  R V  
Sbjct: 71  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGK 130
Query: 141 DEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
           ++ +  A + N+  F+E+SA +  NV + F +  ++I
Sbjct: 131 EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++ +D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 77  DGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE++  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLR 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 77  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAG E+F  + 
Sbjct: 19  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 78
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 79  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 136 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIG-VEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 80
           GD GVGK+  +++  + +F  +   T+G V      ++  G  IK  +WDTAGQE+   +
Sbjct: 18  GDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL 77
Query: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              YY GA+GA++ +D+T R T  +L+ W+ + + +      I +  NK+D++  + +  
Sbjct: 78  KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK 137
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174
               +  +  +  + E SA T  N    FL  A+
Sbjct: 138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF +  F+     TI   +  ++ EV  ++  L+I DTAG E+F A+ 
Sbjct: 10  GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
             Y +   G  +VY IT +ST+N L         + + + V + L+GNK DLE  R V  
Sbjct: 69  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGK 128
Query: 141 DEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
           ++ +  A + N+  F+E+SA +  NV + F +  ++I
Sbjct: 129 EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAG E+F  + 
Sbjct: 13  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 73  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 129
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 130 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAG E+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 77  DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-DRKVK-A 133
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           ++  F  + +L + + SA +  N E+ FL  A+K+
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      TIGVE        +  +IK  +WDTAG E+F  + 
Sbjct: 19  GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 78
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 79  DGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVK-ERKVK-A 135
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           +   F  + +L + + SA +  N E+ FL  A+K+  N
Sbjct: 136 KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 173

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+C+L  +T  KF  D   T+   F   +  V G+ + L +WDTAGQE +  + 
Sbjct: 16  GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQEDYSRLR 74
Query: 82  RSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              YRGA   ++ + +  +++Y N L  W+ + +    PN  I L+G K+DL        
Sbjct: 75  PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR------- 126
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQ-----AFLETAKKIYQNIK 181
           D+    A+  ++I    ++  GE + +     A++E + K  QN+K
Sbjct: 127 DDKGYLADHTNVI----TSTQGEELRKQIGAAAYIECSSKTQQNVK 168

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      TIGVE        +  +IK  +WDTAG E+F  + 
Sbjct: 12  GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 72  DGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVK-ERKVK-A 128
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           +   F  + +L + + SA +  N E+ FL  A+K+  N
Sbjct: 129 KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 166

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+  + +    +F      TIGVE        +  +IK  +WDTAG E+F  + 
Sbjct: 11  GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 70
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
             YY  A  A++++D+T R TY ++ +W  D   +   N  I L GNK+D++  R V+  
Sbjct: 71  DGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVK-ERKVK-A 127
Query: 142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           +   F  + +L + + SA +  N E+ FL  A+K+  N
Sbjct: 128 KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 165

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 10  GAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
             Y R   G L V+ I    ++  +  +    K + + + V + L+GNK DL G R V  
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG-RTVES 127
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
            +A+  A    + ++E SA T + VE AF    ++I Q+
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF +  F+ +   TI   +  ++ EV  ++  L+I DTAG E+F A+ 
Sbjct: 10  GSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
             Y +   G  +VY IT +ST+N L         + +   V + L+GNK DLE  R V  
Sbjct: 69  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK 128
Query: 141 DEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
           ++ +  A +  +  F+E+SA +  NV + F +  ++I
Sbjct: 129 EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  QF +  F+ D   TI   +  + + +     +L I DTAGQE F A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L+V+ +T R ++  +  +      + + +   + LIGNK DL+  R V  +E ++ 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
           A +  + ++EASA    NV+QAF E  + I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L+ +F  ++F+ +   T+   +  +   +  E + ++I DTAGQE    + 
Sbjct: 35  GRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED--TIQ 91
Query: 82  RS-YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP-NTVIFLIGNKMDLEGSRDVR 139
           R  + R   G ++VYDIT R ++  +         +  P N  + L+GNK DL+ SR V 
Sbjct: 92  REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS 151
Query: 140 YDEAKKFAEENDLIFVEASAMTGE-NVEQAFLETAKKI 176
            +E +K A E    F E SA TGE N+ + F E  +++
Sbjct: 152 TEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  + 
Sbjct: 15  GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNRLR 73
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              YRGA   ++ + +  +++Y ++S  W+ + K+   P   I L+G K+DL   +    
Sbjct: 74  PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFI 132
Query: 141 DEAKKFA-------EENDLI----FVEASAMTGENVEQAFLETAKKIYQ 178
           D             E   LI    ++E S+ + ENV+  F    + + Q
Sbjct: 133 DHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 10  GARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
             Y R   G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V  
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVES 127
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
            +A+  A    + ++E SA T + VE AF    ++I Q+
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  QF +  F+     TI   +  ++ EV  ++  L+I DTAG E+F A+ 
Sbjct: 10  GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
             Y +   G  +VY IT +ST+N L         + +   V + L+GNK DLE  R V  
Sbjct: 69  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK 128
Query: 141 DEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
           ++ +  A +  +  F+E+SA +  NV + F +  ++I
Sbjct: 129 EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 10  GAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
             Y R   G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V  
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVES 127
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
            +A+  A    + ++E SA T + VE AF    ++I Q+
Sbjct: 128 RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE +  + 
Sbjct: 13  GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLR 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              YRGA   ++ + +  +++Y +++  W+ + ++   P   I L+G K+DL   +    
Sbjct: 72  PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFI 130
Query: 141 D-------------EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           D             E KK       I++E S+ T +NV+  F    K + Q
Sbjct: 131 DHPGAVPITTNQGEELKKLIGSP--IYIECSSKTQQNVKAVFDAAIKVVLQ 179

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
           GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y
Sbjct: 13  GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEA 143
            R   G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQA 130
Query: 144 KKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           +  A    + ++E SA T + VE AF    ++I Q+
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 22  GDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW--DTAGQERF 77
           G+  VGKS L+  FT +  KF+ D   T GVE     + +    + ++++  DTAG + +
Sbjct: 27  GEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY 86
Query: 78  RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL----TNPNTVIFLIGNKMDLE 133
           +     Y+ G   A++V+D++   ++    +W    K+       P   + L+ NK DL 
Sbjct: 87  KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV-LVANKTDLP 145
Query: 134 GSR-DVRYDEAKKFAEENDLIFVEASA-MTGENVEQAFLETAKKIYQNIKD 182
             R  VR D A+ +A  N L F + SA   G++ +  FL  A   Y+N +D
Sbjct: 146 PQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +C  TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
           GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y
Sbjct: 14  GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEA 143
            R   G L V+ I    ++  +  +    K + +   V + L+GNK DL  SR V   +A
Sbjct: 73  MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQA 131
Query: 144 KKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +  A    + F+E SA T + V+ AF    ++I
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
           GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y
Sbjct: 14  GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEA 143
            R   G L V+ I    ++  +  +    K + +   V + L+GNK DL  SR V   +A
Sbjct: 73  MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQA 131
Query: 144 KKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +  A    + F+E SA T + V+ AF    ++I
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTAGQ+ +    
Sbjct: 13  GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
           ++Y     G ++VY +T   ++  +        ++     + I L+GNK DL   R + Y
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 131
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAF 169
           +E K  AE  +  F+E+SA   +     F
Sbjct: 132 EEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTAGQ+ +    
Sbjct: 11  GYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
           ++Y     G ++VY +T   ++  +        ++     + I L+GNK DL   R + Y
Sbjct: 70  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 129
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAF 169
           +E K  AE  +  F+E+SA   +     F
Sbjct: 130 EEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 5/159 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTAGQ+ +    
Sbjct: 8   GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 66
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
           ++Y     G ++VY +T   ++  +        ++     + I L+GNK DL   R + Y
Sbjct: 67  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 126
Query: 141 DEAKKFAEENDLIFVEASA---MTGENVEQAFLETAKKI 176
           +E K  AE  +  F+E+SA    T  +V +  +  A+KI
Sbjct: 127 EEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTAGQ+ +    
Sbjct: 13  GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRY 140
           ++Y     G ++VY +T   ++  +        ++     + I L+GNK DL   R + Y
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 131
Query: 141 DEAKKFAEENDLIFVEASAMTGENVEQAF 169
           +E K  AE  +  F+E+SA   +     F
Sbjct: 132 EEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 15/167 (8%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE +  + 
Sbjct: 13  GDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLR 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              YRGA   L+ + +  +++Y ++   WL + K+   P   I L+G K+DL   +    
Sbjct: 72  PLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRDDKQFLK 130
Query: 141 DEAKKFA-------EENDLI----FVEASAMTGENVEQAFLETAKKI 176
           D     +       E   +I    ++E S+ T +NV+  F +TA ++
Sbjct: 131 DHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-DTAIRV 176

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN 186
           A    + ++E SA T + VE AF    ++I Q+ K  KLN
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-KLRKLN 172

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+  GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 13  GDVACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 72  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 130
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K  E  D+        ++E SA T + V + F
Sbjct: 131 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  QF ++ F+PD   TI   +  +  E+  +   L + DTAGQE F A+   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L+VY +T ++++ H+  +      + +  +  + L+ NK+DL   R V  D+ K+ 
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 147 AEENDLIFVEASAMTGE-NVEQAFLETAKKIYQN 179
           A + ++ ++E SA     NV++ F +  + I Q 
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  ++ +    K + + + V + L+GNK DL  +R V   +A + 
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           A+   + F+E SA T + VE AF    ++I Q
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   +I   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 14  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 73  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 131
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           + AK      K  E  D+        ++E SA T + V + F E A +     + GK
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 187

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 71  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           + AK      K  E  D+        ++E SA T + V + F E A +     + GK
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 185

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 14  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 73  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 131
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           + AK      K  E  D+        ++E SA T + V + F E A +     + GK
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 187

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 15  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 73
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 74  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 132
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           + AK      K  E  D+        ++E SA T + V + F E A +     + GK
Sbjct: 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 188

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+     TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+ VGK+CLL  +T   F  +   T+   +   ++ V  + + L +WDTAGQE +  + 
Sbjct: 16  GDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLR 74
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   ++Y ++ + W  + ++   P+T I L+G K+DL   +D   
Sbjct: 75  PLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH-HCPSTPIILVGTKLDLRDDKDTIE 133
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E D + ++E SA+T   ++  F E  + +
Sbjct: 134 KLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+     TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GN+ DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  QF ++ F+P+   TI   +  +  E+  +   L + DTAGQE F A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L+VY +T ++++ H+  +      + +  +  + L+ NK+DL   R V  D+ K+ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AEENDLIFVEASAMTGE-NVEQAFLETAKKIYQN 179
           A + ++ ++E SA     NV++ F +  + I Q 
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+ VGK+CLL  +T   F  +   T+   +   ++ V  + + L +WDTAGQE +  + 
Sbjct: 17  GDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLR 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   ++Y ++ + W  + ++   P+T I L+G K+DL   +D   
Sbjct: 76  PLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH-HCPSTPIILVGTKLDLRDDKDTIE 134
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E D + ++E SA+T   ++  F E  + +
Sbjct: 135 KLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 16  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 74
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 75  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 133
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K  E  D+        ++E SA T + V + F
Sbjct: 134 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 14  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 73  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 131
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K  E  D+        ++E SA T + V + F
Sbjct: 132 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 13  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 72  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 130
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K  E  D+        ++E SA T + V + F
Sbjct: 131 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 26  VGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY 85
           VGK+ L HQF E +F      T+   + ++I+ +  ++  L + DTAGQ+ +  +  S+ 
Sbjct: 35  VGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 86  RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAK 144
            G  G ++VY +T   ++  + S             V + L+GNK DL   R+V+  E K
Sbjct: 94  IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK 153
Query: 145 KFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           K AE     F+E+SA   +  +  F +  ++I
Sbjct: 154 KLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   +I   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           K+ L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 32  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 91  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRR 149
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      +  E  D+        ++E SA T E V + F
Sbjct: 150 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DT GQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 32  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 91  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFX-PNVPIILVGNKKDLRQDEHTRR 149
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      +  E  D+        ++E SA T E V + F
Sbjct: 150 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG+E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DT GQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++  Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREFRQH 166

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+  GK+CLL  F++ +F P        E     IEV G++++L +WDTAGQE +    
Sbjct: 12  GDVACGKTCLLIVFSKDQF-PAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRAR 70
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL        
Sbjct: 71  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTAR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K AE  D+        ++E SA T + V + F
Sbjct: 130 ELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 12  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y     +L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 71  PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 129
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 130 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 32  GDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + + +  S  N    W+ + K+   PN  I L+ NK DL     VR 
Sbjct: 91  PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRT 149
Query: 141 DEAKKFAEE-------------NDLIFVEASAMTGENVEQAFLETAKK 175
           + A+   E                  ++E SA T E V + F ETA +
Sbjct: 150 ELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATR 196

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE   A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTA QE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTA QE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 14  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y     +L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 73  PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 131
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 132 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + +   V + L+GNK DL  SR V   +A+  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
           A    + F+E SA T + V+ AF    ++I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + +   V + L+GNK DL  SR V   +A+  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
           A    + F+E SA T + V+ AF    ++I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y     +L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG E + A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y     +L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  QF ++ F+ D   TI   +  +  E+  +   L + DTAGQE F A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L+VY +T ++++ H+  +      + +  +  + L+ NK+DL   R V  D+ K+ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AEENDLIFVEASAMTGE-NVEQAFLETAKKIYQN 179
           A + ++ ++E SA     NV++ F +  + I Q 
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V  + + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   ++Y ++ + W  + ++   P+T I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH-HCPSTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E D + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG E + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + + + V + L+GNK DL  +R V   +A+  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           A    + ++E SA T + VE AF    ++I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 17  GDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 76  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 134
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 135 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +  + 
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 220
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   ++++H+ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 279
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 280 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 37  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 95
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 96  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 154
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 155 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +  + 
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 220
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   ++++H+ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 279
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 280 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQ 178
                    + Y +    A+E   + ++E SA+T   ++  F E  + + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 20  GDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 78
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 79  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 137
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 138 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 29  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 87
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 88  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 146
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 147 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +  + 
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 220
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   ++++H+ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 279
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 280 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAG E + A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L V+ I    ++  +  +    K + +   V + L+GNK DL  SR V   +A+  
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDL 151
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
           A    + F+E SA T + V+ AF    ++I
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 71  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           + AK      K  E  D+        ++E SA T + V + F E A +     + GK
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 185

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 71  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           + AK      K  E  D+        ++E SA T + V + F E A +     + GK
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGK 185

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  F++ +       T+   F + +++   E+  L +WDTAGQE +  + 
Sbjct: 30  GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLR 88
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL--EGSRDV 138
              Y  +   L+ + +  R++++++S+ W  + K+  +    + L+G K+DL  +GS DV
Sbjct: 89  PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDV 147
Query: 139 RYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQN 179
              E     ++   + ++EAS++    + + F ++   I+ N
Sbjct: 148 TKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 71  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K  E  D+        ++E SA T + V + F
Sbjct: 130 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 10  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 69  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 127
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K  E  D+        ++E SA T + V + F
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  F++ +       T+   F + +++   E+  L +WDTAGQE +  + 
Sbjct: 29  GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLR 87
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL--EGSRDV 138
              Y  +   L+ + +  R++++++S+ W  + K+  +    + L+G K+DL  +GS DV
Sbjct: 88  PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDV 146
Query: 139 RYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQN 179
              E     ++   + ++EAS++    + + F ++   I+ N
Sbjct: 147 TKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 10  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 69  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 127
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K  E  D+        ++E SA T + V + F
Sbjct: 128 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  QF ++ F+ +   TI   +     E+  +   L + DTAGQE F A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G L+VY +T ++++ H+  +      + +  +  + L+ NK+DL   R V  D+ K+ 
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AEENDLIFVEASAMTGE-NVEQAFLETAKKIYQN 179
           A + ++ ++E SA     NV++ F +  + I Q 
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 71  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRR 129
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      +  E  D+        ++E SA T E V + F
Sbjct: 130 ELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 11  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   P+T I L+G K+DL   +D   
Sbjct: 70  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLDLRDDKDTIE 128
Query: 138 ---------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A E   + ++E SA+T   ++  F E  + +
Sbjct: 129 RLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T      +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 37  GDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 95
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 96  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 154
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 155 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 11  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   P+T I L+G K+DL   +D   
Sbjct: 70  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLDLRDDKDTIE 128
Query: 138 ---------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A E   + ++E SA+T   ++  F E  + +
Sbjct: 129 RLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   P+T I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A E   + ++E SA+T   ++  F E  + +
Sbjct: 128 RLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +  + 
Sbjct: 37  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 95
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 96  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 154
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 155 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +  + 
Sbjct: 13  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 72  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 130
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 131 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--- 137
              Y      L+ + +   +++ ++ + W  + ++   PNT I L+G K+DL   +D   
Sbjct: 69  PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIE 127
Query: 138 ---------VRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKI 176
                    + Y +    A+E   + ++E SA+T   ++  F E  + +
Sbjct: 128 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   +  V 
Sbjct: 30  GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 88
Query: 82  RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y  +   L+ +DI+R  T +  L  W  + +    PNT + L+G K DL        
Sbjct: 89  PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLV 147
Query: 135 ------SRDVRYDEAKKFAEE-NDLIFVEASAMTGEN 164
                    V YD+    A++     ++E SA+  EN
Sbjct: 148 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   +  V 
Sbjct: 14  GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y  +   L+ +DI+R  T +  L  W  + +    PNT + L+G K DL        
Sbjct: 73  PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLV 131
Query: 135 ------SRDVRYDEAKKFAEE-NDLIFVEASAMTGEN 164
                    V YD+    A++     ++E SA+  EN
Sbjct: 132 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   +  V 
Sbjct: 35  GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 93
Query: 82  RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y  +   L+ +DI+R  T +  L  W  + +    PNT + L+G K DL        
Sbjct: 94  PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLV 152
Query: 135 ------SRDVRYDEAKKFAEE-NDLIFVEASAMTGEN 164
                    V YD+    A++     ++E SA+  EN
Sbjct: 153 ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAG E +  + 
Sbjct: 15  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR 73
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY 140
              Y      LM + I +  S  N    W  + K+   PN  I L+GNK DL      R 
Sbjct: 74  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRR 132
Query: 141 DEAK------KFAEENDLI-------FVEASAMTGENVEQAF 169
           + AK      K  E  D+        ++E SA T + V + F
Sbjct: 133 ELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD G GK+ LL  F +  F      T+   +   + +V G+ + L IWDTAGQ+ +  + 
Sbjct: 41  GDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQDDYDRLR 99
Query: 82  RSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLE------- 133
             +Y  A+  L+ +D+T  +++ N  + W  +  +       I ++G K DL        
Sbjct: 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVN 158
Query: 134 -----GSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAK 174
                G   V Y   ++ A     + ++E SA   +NV   F E A+
Sbjct: 159 KLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 35/188 (18%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 12  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDITRR--------------------STYNHLSSWLTDTKNLTNPNT 121
              Y    G     DIT R                    S  N  + W  + ++   PNT
Sbjct: 71  PLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHC-PNT 129
Query: 122 VIFLIGNKMDLEGSRD------------VRYDEAKKFAEENDLI-FVEASAMTGENVEQA 168
            I L+G K+DL   +D            + Y +    A+E   + ++E SA+T   ++  
Sbjct: 130 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 189
Query: 169 FLETAKKI 176
           F E  + +
Sbjct: 190 FDEAIRAV 197

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           G  GVGKS L+ +F +  F      T+   +  ++I        LQI DT G  +F A+ 
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQ 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVR 139
           R         ++VY IT R +   L         +     +  I L+GNK D   SR+V+
Sbjct: 69  RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ 128
Query: 140 YDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171
             EA+  A      F+E SA    NV++ F E
Sbjct: 129 SSEAEALARTWKCAFMETSAKLNHNVKELFQE 160

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+  GK+ +L    +  + P+       E  T  +E   ++++L +WDT+G   +  V 
Sbjct: 34  GDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 92
Query: 82  RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDL-------- 132
              Y  +   L+ +DI+R  T +  L  W T+  +   P+T + LIG K DL        
Sbjct: 93  PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLM 151
Query: 133 ----EGSRDVRYDE----AKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
               +    + Y++    AK+   E   I++E SA T E    +   TA  +  N
Sbjct: 152 ELSHQKQAPISYEQGCAIAKQLGAE---IYLEGSAFTSEKSIHSIFRTASMLCLN 203

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+  GK+ +L    +  + P+       E  T  +E   ++++L +WDT+G   +  V 
Sbjct: 18  GDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 76
Query: 82  RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDL-------- 132
              Y  +   L+ +DI+R  T +  L  W T+  +   P+T + LIG K DL        
Sbjct: 77  PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLM 135
Query: 133 ----EGSRDVRYDE----AKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
               +    + Y++    AK+   E   I++E SA T E    +   TA  +  N
Sbjct: 136 ELSHQKQAPISYEQGCAIAKQLGAE---IYLEGSAFTSEKSIHSIFRTASMLCLN 187

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+  GK+ +L    +  + P+       E  T  +E   ++++L +WDT+G   +  V 
Sbjct: 17  GDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDL-------- 132
              Y  +   L+ +DI+R  T +  L  W T+  +   P+T + LIG K DL        
Sbjct: 76  PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLM 134
Query: 133 ----EGSRDVRYDE----AKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
               +    + Y++    AK+   E   I++E SA T E    +   TA  +  N
Sbjct: 135 ELSHQKQAPISYEQGCAIAKQLGAE---IYLEGSAFTSEKSIHSIFRTASMLCLN 186

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD+ VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV- 80
           GD GVGK+ L   F  ++   D    +G +   R + V GE   L + DT   E+     
Sbjct: 11  GDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW 69
Query: 81  -TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV 138
              S  +G +  ++VY I  R ++   S      +     + V I L+GNK DL   R+V
Sbjct: 70  SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREV 129
Query: 139 RYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
             +E +  A   D  F+E SA    NV + F
Sbjct: 130 SVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+ L+  +T   +  +   T    F   ++ V G  ++LQ+ DTAGQ+ F  + 
Sbjct: 27  GDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDEFDKLR 85
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLE------- 133
              Y      L+ + +   S++ ++S  W+ + +    P   I L+G + DL        
Sbjct: 86  PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILVGTQSDLREDVKVLI 144
Query: 134 -----GSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAF 169
                  + V  + AK  AEE     ++E SA+T +N+++ F
Sbjct: 145 ELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 17  GDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 76  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 134
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 135 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L  QF    F+     TI  +F  + IEV      L+I DTAG E+F ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKF 146
             G ++VY +  + ++  +         +     V + L+GNK+DLE  R+V   E +  
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 147 AEENDLIFVEASAMTGENVEQAFLETAKKI 176
           AEE    F+E SA +   V++ F E  +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 11  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 69
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 70  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 128
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 129 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 172

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 13  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 72  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 130
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 131 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 17  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 75
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 76  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 134
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 135 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 20  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 78
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 79  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 137
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 138 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 181

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 12  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 71  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 129
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 130 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 13  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 71
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 72  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 130
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 131 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 14  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 73  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 131
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 132 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 12  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 70
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 71  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 129
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 130 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T   ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +    F  +   T+   +    + V G++  L ++DTAGQE +  + 
Sbjct: 25  GDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQEDYDRLR 83
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   +++ ++   W+ + K    PN    LIG ++DL        
Sbjct: 84  PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLA 142
Query: 135 ------SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
                  + +  ++ +K A+E     +VE SA+T + ++  F E    I
Sbjct: 143 RLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T   ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +    + + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           G  GVGKS L   F   +  P+     HT       R I V GE+  L ++D   Q+  R
Sbjct: 14  GAPGVGKSALARIFGGVEDGPEAEAAGHTY-----DRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRD 137
            +           ++VY +T + ++   S      +     + V I L+GNK DL  SR+
Sbjct: 69  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 128
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           V  DE +  A   D  F+E SA    NV+  F    ++I
Sbjct: 129 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           G  GVGKS L   F   +  P+     HT       R I V GE+  L ++D   Q+  R
Sbjct: 14  GAPGVGKSALARIFGGVEDGPEAEAAGHTY-----DRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRD 137
            +           ++VY +T + ++   S      +     + V I L+GNK DL  SR+
Sbjct: 69  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 128
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           V  DE +  A   D  F+E SA    NV+  F    ++I
Sbjct: 129 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           G  GVGKS L   F   +  P+     HT       R I V GE+  L ++D   Q+  R
Sbjct: 9   GAPGVGKSALARIFGGVEDGPEAEAAGHTY-----DRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 79  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRD 137
            +           ++VY +T + ++   S      +     + V I L+GNK DL  SR+
Sbjct: 64  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 123
Query: 138 VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           V  DE +  A   D  F+E SA    NV+  F    ++I
Sbjct: 124 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L + DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +    +   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 22  GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQER 76
           G+ GVGKS L + F         DC   +G +   R + V GE    I L +W+  G+  
Sbjct: 44  GEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENE 102
Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGS 135
           +  +     +     L+VY IT R+++   S      +       + I L+GNK DL   
Sbjct: 103 W--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 160
Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R+V   E +  A   D  F+E SA    NV++ F    +++
Sbjct: 161 REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  K   +   T+   +   ++ + GE   L ++DTAGQE +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAG E +  + 
Sbjct: 14  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLEDYDRLR 72
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 73  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 131
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 132 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAG E +  + 
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLEDYDRLR 68
Query: 82  RSYYRGAAGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEG------ 134
              Y      L+ + +   S++ ++   W+ +  +   P T   L+G ++DL        
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIE 127
Query: 135 ------SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLE 171
                  + +  + A+K A +   + +VE SA+T + ++  F E
Sbjct: 128 KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 16/162 (9%)
Query: 22  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 81
           GD   GK+CLL   ++ +F P+       E     +EV G +++L +WDTAGQE +  + 
Sbjct: 17  GDGACGKTCLLIVNSKGQF-PEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLR 75
Query: 82  RSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL-------- 132
              Y  +   L+ + I    S  N    W+ +  +       I L+G K+DL        
Sbjct: 76  PLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVGCKVDLRNDPQTIE 134
Query: 133 ----EGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAF 169
               EG + V   E +  A++     + E SA TG  V + F
Sbjct: 135 QLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 22  GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQER 76
           G+ GVGKS L + F         DC   +G +   R + V GE    I L +W+  G+  
Sbjct: 13  GEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENE 71
Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGS 135
           +  +     +     L+VY IT R+++   S      +       + I L+GNK DL   
Sbjct: 72  W--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 129
Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R+V   E +  A   D  F+E SA    NV++ F    +++
Sbjct: 130 REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 7/153 (4%)
Query: 22  GDMGVGKSCLLHQFT-EQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQERF 77
           G+ GVGKS L + F      M      +G +   R + V GE    I L +W+  G+  +
Sbjct: 13  GEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW 72
Query: 78  RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSR 136
             +     +     L+VY IT R+++   S      +       + I L+GNK DL   R
Sbjct: 73  --LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR 130
Query: 137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
           +V   E +  A   D  F+E SA    NV++ F
Sbjct: 131 EVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 7/153 (4%)
Query: 22  GDMGVGKSCLLHQFT-EQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQERF 77
           G+ GVGKS L + F      M      +G +   R + V GE    I L +W+  G+  +
Sbjct: 13  GEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW 72
Query: 78  RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSR 136
             +     +     L+VY IT R+++   S      +       + I L+GNK DL   R
Sbjct: 73  --LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR 130
Query: 137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAF 169
           +V   E +  A   D  F+E SA    NV++ F
Sbjct: 131 EVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 28  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 87
           KS L+ +F +  F      TI   +  ++I        LQI DT G  +F A+ R     
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 88  AAGALMVYDITRRSTYNHLSSWLTDTKNL--TNPNTVIFLIGNKMDLEGSRDVRYDEAKK 145
               ++V+ +T + +   L         +  +  +  + L+GNK D E  R+V   EA+ 
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 146 FAEENDLIFVEASAMTGENVEQAF-----LETAKKIYQNIKDGK 184
            A+E    F+E SA    NV++ F     LET + +  NI DGK
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNI-DGK 181

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
           G GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ+R R++ R Y
Sbjct: 27  GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDL 132
           YR   G + V D   RS        +    N       ++L+  NK DL
Sbjct: 82  YRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
           G GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ+R R++ R Y
Sbjct: 10  GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 64
Query: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDTKN---LTNPNTVIFLIGNKMDL 132
           YR   G + V D   RS        +    N   L N   ++F   NK DL
Sbjct: 65  YRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF--ANKQDL 113

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
           G GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ+R R++ R Y
Sbjct: 27  GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDTKN---LTNPNTVIFLIGNKMDL 132
           YR   G + V D   RS        +    N   L N   ++F   NK DL
Sbjct: 82  YRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF--ANKQDL 130

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 22  GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQER 76
           G+ G GK+ LL Q   T++  +     T+G++     I++  ++   + L +WD AG+E 
Sbjct: 9   GNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68
Query: 77  FRAVTRSYYRGAAGALMVYDITR-RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
           F +    +    A  L VYD+++ ++  +    WL + K   + + VI L+G  +D+
Sbjct: 69  FYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHLDV 124

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 22  GDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEK---IKLQIWDTAGQER 76
           G+ G GK+ LL Q   T++  +     T+G++     I++  ++   + L +WD AG+E 
Sbjct: 7   GNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 66
Query: 77  FRAVTRSYYRGAAGALMVYDITR-RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
           F +    +    A  L VYD+++ ++  +    WL + K   + + VI L+G  +D+
Sbjct: 67  FYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHLDV 122

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+  ++     +F  D   T+G  F  R I      IKL  WD  GQ RFR++   Y R
Sbjct: 34  GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCR 89
Query: 87  GAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
           G +  + + D   +    ++ N L + L   +    P   + ++GNK DL G+ D
Sbjct: 90  GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP---VLVLGNKRDLPGALD 141

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+  ++     +F  D   T+G  F  R  +V    + ++IWD  GQ RFR++   Y R
Sbjct: 34  GKTTFVNVIASGQFSEDMIPTVG--FNMR--KVTKGNVTIKIWDIGGQPRFRSMWERYCR 89
Query: 87  GAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
           G    + + D   R    ++ N L + L   +    P   + ++GNK DL  + D
Sbjct: 90  GVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP---VLVLGNKRDLPNALD 141

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+  ++     +F  D   T+G  F  R I      IKL  WD  GQ RFR++   Y R
Sbjct: 43  GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCR 98
Query: 87  GAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD 137
           G +  + + D   +    ++ N L + L D   L      + ++GNK DL G+ D
Sbjct: 99  GVSAIVYMVDAADQEKIEASKNELHN-LLDKPQLQ--GIPVLVLGNKRDLPGALD 150

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
             GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R Y
Sbjct: 332 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 386
Query: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           Y G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 387 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R YY 
Sbjct: 12  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 66
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 67  GTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R YY 
Sbjct: 25  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 79
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 80  GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R YY 
Sbjct: 24  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 78
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 79  GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R YY 
Sbjct: 12  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 66
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 67  GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R+  R+Y+ 
Sbjct: 28  GKTTILKKFNGEDIDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 82
Query: 87  GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEG---SRDVR 139
              G + V D   R         L S L + + L     +IF   NK DL G   S  +R
Sbjct: 83  STDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGALSSNAIR 139
Query: 140 YDEAKKFAEENDLIFVEASAMTGENV 165
                     +       SA+TGEN+
Sbjct: 140 EVLELDSIRSHHWCIQGCSAVTGENL 165

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R YY 
Sbjct: 12  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 66
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 67  GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R+  R+Y+ 
Sbjct: 30  GKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 87  GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
              G + V D   R         L S L + + L     +IF   NK DL G+
Sbjct: 85  STDGLIWVVDSADRQRXQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGA 134

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R+  R+Y+ 
Sbjct: 30  GKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 87  GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
              G + V D   R         L S L + + L     +IF   NK DL G+
Sbjct: 85  STDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGA 134

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R+  R+Y+ 
Sbjct: 30  GKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 87  GAAGALMVYDITRRSTYN----HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
              G + V D   R         L S L + + L     +IF   NK DL G+
Sbjct: 85  STDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIF--ANKQDLPGA 134

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 23/156 (14%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
           G GK+ +L++    + +   P TIG    T    +  + +KL +WD  GQ   R   R Y
Sbjct: 28  GAGKTTILYRLQIGEVVTTKP-TIGFNVET----LSYKNLKLNVWDLGGQTSIRPYWRCY 82
Query: 85  YRGAAGALMVYDIT---RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD 141
           Y   A  + V D T   R ST +     +   + L +   ++F   NK D  G+      
Sbjct: 83  YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF--ANKQDQPGAL----- 135
Query: 142 EAKKFAEENDLI--------FVEASAMTGENVEQAF 169
            A + ++E +L+         V +SA+ GE + +  
Sbjct: 136 SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 25  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 84
           G GK+ +L++    + +   P TIG  F    ++     I   +WD  GQ+R R++ R Y
Sbjct: 27  GAGKTTVLYKLKLGEVITTIP-TIG--FNVECVQYC--NISFTVWDVGGQDRIRSLWRHY 81
Query: 85  YRGAAGALMVYDITRRSTYNHLSSWLTDTKN---LTNPNTVIFLIGNKMDL 132
           Y    G + V D   RS        +    N   L N   ++F   NK DL
Sbjct: 82  YCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVF--ANKQDL 130

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 22  GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 77
           G+ GVGKS L   F     +    P+ P     +   R I V  E++ L ++D   Q   
Sbjct: 30  GESGVGKSTLAGTFGGLQGDSAHEPENPE----DTYERRIMVDKEEVTLVVYDIWEQGDA 85
Query: 78  RAVTRSYYRGAAGA-LMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLEGS 135
               R +      A L+V+ +T R +++ +   L   +    + +  + L+GNK DL  S
Sbjct: 86  GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145
Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R+V  +E +  A       +E SA    N  + F    ++I
Sbjct: 146 REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  G ++ R + R YY 
Sbjct: 25  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYT 79
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 80  GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  G ++ R + R YY 
Sbjct: 14  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYT 68
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 69  GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  G ++ R + R YY 
Sbjct: 15  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGLDKIRPLWRHYYT 69
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDL 132
           G  G + V D   R   +     L    N     + +I +  NK DL
Sbjct: 70  GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ++ R + R Y++
Sbjct: 28  GKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 82
Query: 87  GAAGALMVYDITRRSTYN 104
              G + V D   R   N
Sbjct: 83  NTQGLIFVVDSNDRERVN 100

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ++ R + R YY+
Sbjct: 29  GKTSILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYYQ 83
Query: 87  GAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDL 132
                + V D   R         L    N     N ++ +  NK DL
Sbjct: 84  NTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDL 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-110
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-109
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-109
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-108
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-107
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-106
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-106
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-106
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-105
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-105
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-104
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-103
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-102
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-102
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-101
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-100
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-100
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-100
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-100
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-100
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-100
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-99
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-99
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	7e-99
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	9e-99
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-98
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-98
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-98
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	8e-96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-95
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-93
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-91
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-91
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-89
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-87
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-79
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-72
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	5e-72
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-71
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-70
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-68
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-68
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-66
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-65
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	8e-65
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-64
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-64
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-64
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-63
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	7e-63
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-62
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-62
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-61
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	7e-61
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-60
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	8e-60
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	9e-60
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-57
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-56
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-56
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	6e-56
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-54
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-43
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-39
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-37
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-37
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-37
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-36
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	7e-36
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-35
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-34
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	7e-34
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-33
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	9e-33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-23
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-20
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	7e-15
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-14
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-14
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-13
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	3e-13
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-13
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	5e-13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	6e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-11
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-10
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-08
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	9e-07
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	3e-05
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	7e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	2e-04

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  311 bits (800), Expect = e-110
 Identities = 109/180 (60%), Positives = 143/180 (79%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +Y ++FK+++IG+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQERFR+VTRSYYRGAAGAL+VYDIT R TYN L++WLTD + L + N VI L GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           DL+  R+V + EA +FA+EN+L+F+E SA+TGENVE+AF++ A+KI   I+ G+L+    
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERM 185

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  311 bits (799), Expect = e-109
 Identities = 108/183 (59%), Positives = 140/183 (76%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           +   G     ++FK+++IG  G GKSCLLHQF E KF  D  HTIGVEFG+R++ V G+ 
Sbjct: 14  LVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKT 73

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           +KLQIWDTAGQERFR+VTRSYYRGAAGAL+VYDIT R TYN L++WLTD + L +PN V+
Sbjct: 74  VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVV 133

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
            L GNK DL+  R+V + EA +FA+EN+L+F+E SA+TGENVE+AFL+ A+ I   I  G
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 193

Query: 184 KLN 186
           +L+
Sbjct: 194 ELD 196

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  309 bits (794), Expect = e-109
 Identities = 112/181 (61%), Positives = 139/181 (76%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
           SS      SY+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R++ + G++I
Sbjct: 11  SSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI 70

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF 124
           KLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL D +  ++ N VI 
Sbjct: 71  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM 130

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           LIGNK DLE  RDV+ +E + FA E+ LIF+E SA T  NVE+AF+ TAK+IY+ I+ G 
Sbjct: 131 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190

Query: 185 L 185
            
Sbjct: 191 F 191

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  308 bits (792), Expect = e-108
 Identities = 151/176 (85%), Positives = 161/176 (91%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
            S++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 4   GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI
Sbjct: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 123

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
            LIGNK DLE  RDV Y+EAK+FAEEN L+F+EASA TGENVE AFLE AKKIYQN
Sbjct: 124 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  306 bits (785), Expect = e-107
 Identities = 94/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)

Query: 4   MSSSGQ-YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 62
           MSS    Y Y  +FK ++IGD GVGKS LL +FT+ +F  D   TIGVEF TR +E+ G+
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV 122
           +IK QIWDTAGQER+RA+T +YYRGA GAL+VYDI++ S+Y + + WL++ +   + N  
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA 120

Query: 123 IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
           + LIGNK DL   R V  +E+K FA+EN L+F E SA+  ENV++AF E    IYQ +  
Sbjct: 121 VGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180

Query: 183 GKLNANMTESGVQHKERGGPA------SLGDSSSSDKPNCSC 218
            +++   + +         P       +   + +      +C
Sbjct: 181 HQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNC 222

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  304 bits (780), Expect = e-106
 Identities = 85/208 (40%), Positives = 126/208 (60%), Gaps = 5/208 (2%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
            Y Y+FK ++IG+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQERFR +T SYYRG+ G ++VYD+T + ++N +  WL +         +  L+GNK 
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           DL+  R V YD AK+FA+ N + F+E SA+   NVE AFL  A++I +++    LN    
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQ 183

Query: 191 ESGVQHKERGGPASLGDSSSSDKPNCSC 218
           +         G  +L   S ++   C C
Sbjct: 184 KKE-----DKGNVNLKGQSLTNTGGCCC 206

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  301 bits (774), Expect = e-106
 Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 1/195 (0%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 60
           + +MSS     Y Y+FK ++IGD GVGKSCLL +F +  +      TIGV+F  R IE+ 
Sbjct: 3   LGSMSSMNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD 61

Query: 61  GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN 120
           G+ IKLQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N
Sbjct: 62  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 121

Query: 121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
               L+GNK DL   + V Y  AK+FA+   + F+E SA    NVEQ+F+  A +I + +
Sbjct: 122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

Query: 181 KDGKLNANMTESGVQ 195
             G       +S V+
Sbjct: 182 GPGATAGGAEKSNVK 196

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  301 bits (774), Expect = e-106
 Identities = 79/178 (44%), Positives = 114/178 (64%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           +   G   Y+++FK ++IG+ GVGK+ LL +FT  +F  D   TIGVEF TR + +    
Sbjct: 14  LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           +K QIWDTAG ER+RA+T +YYRGA GAL+V+D+T+  TY  +  WL +  +      V+
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
            L+GNK DL  +R+V  +EA+ FAE N L+F+E SA+   NVE AF    K+I+  + 
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  301 bits (773), Expect = e-105
 Identities = 88/181 (48%), Positives = 119/181 (65%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQER+R +T +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTE 191
           L   R V  DEA+ FAE+N+L F+E SA+   NVE+AF     +IY+ +   ++      
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

Query: 192 S 192
            
Sbjct: 182 D 182

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  300 bits (770), Expect = e-105
 Identities = 88/172 (51%), Positives = 114/172 (66%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
            +    Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK
Sbjct: 20  GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
            QIWDTAG ER+RA+T +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L
Sbjct: 80  AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
           +GNK DL   R V  DEA+ FAE+N L F+E SA+   NVE AF     +IY
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  298 bits (765), Expect = e-104
 Identities = 74/187 (39%), Positives = 118/187 (63%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           +       Y ++FK ++IG+ GVGK+CL+ +FT+  F P    TIGV+F  + +E++GEK
Sbjct: 15  VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           +KLQIWDTAGQERFR++T+SYYR A   ++ YDIT   ++  L  WL + +   +   + 
Sbjct: 75  VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT 134

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
            L+GNK+DL   R+V    A++F+E  D+ ++E SA   +NVE+ FL+ A ++    +  
Sbjct: 135 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN 194

Query: 184 KLNANMT 190
            L  N++
Sbjct: 195 TLVNNVS 201

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  296 bits (761), Expect = e-103
 Identities = 67/192 (34%), Positives = 108/192 (56%)

Query: 8   GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQ 67
           G + + Y+FK +IIG+  VGK+  L ++ +  F P    T+G++F  + I  + ++IKLQ
Sbjct: 1   GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60

Query: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIG 127
           IWDTAG ER+R +T +YYRGA G +++YDIT   ++N +  W T  K  +  N  + L+G
Sbjct: 61  IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

Query: 128 NKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNA 187
           NK D+E  R V  +  ++ A+     F EASA    NV+Q F      I + + +    A
Sbjct: 121 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTA 180

Query: 188 NMTESGVQHKER 199
           +   +G +   +
Sbjct: 181 DPAVTGAKQGPQ 192

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  293 bits (752), Expect = e-102
 Identities = 81/209 (38%), Positives = 118/209 (56%), Gaps = 1/209 (0%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 60
             + SS    SY  I K ++IGD GVGKSCLL +F E KF P    TIG++F  + ++++
Sbjct: 6   TVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN 65

Query: 61  GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN 120
           G+K+KLQ+WDTAGQERFR +T +YYRGA G ++VYD+T   T+ ++  W        N  
Sbjct: 66  GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE 125

Query: 121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
             + L+GNK D+E +R V  D+ +  A+E  + F+E+SA   +NV + F   AK I + I
Sbjct: 126 AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

Query: 181 KDGKLNANMTESGVQHKERGGPASLGDSS 209
              KL               G  +   S+
Sbjct: 185 DSNKLVGVGNGKEGNISINSGSGNSSKSN 213

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  292 bits (749), Expect = e-102
 Identities = 65/177 (36%), Positives = 110/177 (62%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
           S +   + S   K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +
Sbjct: 2   SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF 124
           K +IWDTAGQER+ ++   YYRGAA A++V+D+T ++++     W+ + +   NPN V+ 
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMA 121

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           L GNK DL  +R V  ++A+ +A+EN L F+E SA T  NV++ F E A+++ +   
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  289 bits (741), Expect = e-101
 Identities = 71/177 (40%), Positives = 109/177 (61%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +Y Y+FK ++IGD GVGK+C+L +F+E  F      TIG++F  R IE+ G++IKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQERFR +T +YYRGA G ++VYDIT   +++++ +W+ + +   + +    ++GNK 
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNA 187
           D+   R V  +  +K A +  + F+E SA    NVE AF   A+ I   +       
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  288 bits (739), Expect = e-100
 Identities = 71/177 (40%), Positives = 115/177 (64%), Gaps = 1/177 (0%)

Query: 7   SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIK 65
           SG   Y   FK +++GD GVGK+CLL +F +  F+      T+G++F  ++++V G K+K
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 61

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQ+WDTAGQERFR+VT +YYR A   L++YD+T +++++++ +WLT+       +  + L
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
           +GNK+D    R V+ ++ +K A+E  L F+E SA TG NV+ AF   AK++ +    
Sbjct: 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  288 bits (739), Expect = e-100
 Identities = 81/175 (46%), Positives = 112/175 (64%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
           SS    Y Y+FK ++IGD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IK
Sbjct: 24  SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           LQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N    L
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           +GNK DL   + V Y  AK+FA+   + F+E SA    NVEQ+F+  A +I + +
Sbjct: 144 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  287 bits (737), Expect = e-100
 Identities = 67/178 (37%), Positives = 108/178 (60%), Gaps = 1/178 (0%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           +         +  + IIIG  GVGK+ L+ +FT+  F   C  T+GV+F  + +E+ G+K
Sbjct: 15  VPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 74

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           I+LQIWDTAGQERF ++T +YYR A G ++VYDIT++ T++ L  W+       + +  +
Sbjct: 75  IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL 134

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
            L+GNK+D E  R++   + +KFA++   + F EASA    NV++ FL+    I + +
Sbjct: 135 LLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  287 bits (737), Expect = e-100
 Identities = 67/179 (37%), Positives = 104/179 (58%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
            +   Q ++ Y+FK +IIG+  VGK+  L ++ +  F P    T+G++F  + +  H ++
Sbjct: 12  ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR 71

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
           +KLQIWDTAGQER+R +T +YYRGA G +++YDIT   ++N +  W T  K  +  N  +
Sbjct: 72  VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQV 131

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
            L+GNK D+E  R V  ++ +  AE+    F EASA    +V QAF      I   + D
Sbjct: 132 ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  288 bits (739), Expect = e-100
 Identities = 62/200 (31%), Positives = 114/200 (57%), Gaps = 11/200 (5%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE- 62
           +   G   Y Y+ K + +GD GVGK+  L+++T+ KF P    T+G++F  + +  + + 
Sbjct: 14  LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQG 73

Query: 63  ---------KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT 113
                    K+ LQ+WDTAGQERFR++T +++R A G L+++D+T + ++ ++ +W++  
Sbjct: 74  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133

Query: 114 KNLTNP-NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172
           +      N  I LIGNK DL   R+V   +A++ A++  + + E SA TG+NVE+A    
Sbjct: 134 QANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193

Query: 173 AKKIYQNIKDGKLNANMTES 192
              I + ++       + ++
Sbjct: 194 LDLIMKRMEQCVEKTQIPDT 213

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  287 bits (737), Expect = e-100
 Identities = 76/175 (43%), Positives = 108/175 (61%), Gaps = 1/175 (0%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
           S      Y ++FK +++GD  VGK+C++ +F    F      TIGV+F  + +E+ G+++
Sbjct: 19  SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 78

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF 124
           KLQIWDTAGQERFR +T+SYYR A GA++ YDIT+RS++  +  W+ D +     N V  
Sbjct: 79  KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL 138

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTGENVEQAFLETAKKIYQ 178
           LIGNK DL   R+V   EA+  AE  D L  +E SA    NVE+AFL  A ++  
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  285 bits (732), Expect = 1e-99
 Identities = 66/169 (39%), Positives = 103/169 (60%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +    FK +++G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQER+ ++   YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           DL   R V + EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  286 bits (733), Expect = 1e-99
 Identities = 65/178 (36%), Positives = 102/178 (57%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
           S        Y+FK ++IG+  VGK+  L ++ +  F P    T+G++F  + +  H ++I
Sbjct: 12  SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI 71

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF 124
           KLQIWDTAGQER+R +T +YYRGA G L++YDI  + ++  +  W T  K  +  N  + 
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI 131

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
           L+GNK DLE  R V  ++ ++ A++    F EASA    NV+Q F      I + + +
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  284 bits (729), Expect = 7e-99
 Identities = 86/192 (44%), Positives = 116/192 (60%), Gaps = 4/192 (2%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
           SS          K +IIG+ GVGKS LL +FT+  F P+   TIGV+F  + I V G K 
Sbjct: 5   SSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKA 64

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-I 123
           KL IWDTAGQERFR +T SYYRGA G ++VYD+TRR T+  L +WL + +     N +  
Sbjct: 65  KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN 124

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
            L+GNK+D E +R+V  +E  KFA ++ ++F+EASA T + V+ AF E  +KI Q    G
Sbjct: 125 MLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP--G 181

Query: 184 KLNANMTESGVQ 195
              +    SG  
Sbjct: 182 LWESENQNSGPS 193

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  283 bits (726), Expect = 9e-99
 Identities = 58/168 (34%), Positives = 99/168 (58%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           S +Y FK +++G+  VGK+ L+ ++ E KF      T+G  F T+ + + G+++ L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQERF A+   YYR + GA++VYDIT   ++  + +W+ + + +      + ++GNK+
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           DLE  R V   EA+ +AE         SA   + +E+ FL+  K++ +
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  283 bits (726), Expect = 1e-98
 Identities = 63/177 (35%), Positives = 103/177 (58%)

Query: 3   TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 62
           TMSS    +    FK + +G+  VGK+ L+ +F    F      TIG++F ++ + +   
Sbjct: 2   TMSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 61

Query: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV 122
            ++LQ+WDTAGQERFR++  SY R +  A++VYDIT  ++++  S W+ D +     + +
Sbjct: 62  TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI 121

Query: 123 IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           I L+GNK DL   R V  +E ++ A+E +++F+E SA  G NV+Q F   A  +   
Sbjct: 122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  282 bits (725), Expect = 1e-98
 Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 14  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 73
            I K ++IGD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQIWDTAG
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
           QERFR +T +YYRGA G ++VYDIT   T+ ++  W        N    + L+GNK D+E
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
            +R V  D+ +  A+E  + F+E+SA   +NV + F   AK I + I  
Sbjct: 122 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  282 bits (725), Expect = 2e-98
 Identities = 72/184 (39%), Positives = 105/184 (57%), Gaps = 5/184 (2%)

Query: 3   TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 62
           +M+      Y ++FK +IIGD GVGKS LL +F +  F      TIGV+F  R +E++GE
Sbjct: 1   SMARD----YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE 56

Query: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV 122
           K+KLQIWDTAGQERFR +T +YYRG  G ++VYD+T   ++ ++  WL +       +  
Sbjct: 57  KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVC 115

Query: 123 IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
             L+GNK D    + V  ++A KFA +  +   E SA    NVE+ F    + + +  KD
Sbjct: 116 RILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD 175

Query: 183 GKLN 186
               
Sbjct: 176 NLAK 179

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  283 bits (726), Expect = 2e-98
 Identities = 62/196 (31%), Positives = 111/196 (56%), Gaps = 14/196 (7%)

Query: 3   TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV--- 59
           +MS      Y Y+ K++ +GD GVGK+ +L+Q+T+ KF      T+G++F  + +     
Sbjct: 2   SMSDG---DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRAN 58

Query: 60  -------HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD 112
                   G++I LQ+WDTAG ERFR++T +++R A G L+++D+T   ++ ++ +W++ 
Sbjct: 59  GPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ 118

Query: 113 TK-NLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE 171
            + +  + N  I L GNK DLE  R V+ +EA++ AE+  + + E SA  G N+  A   
Sbjct: 119 LQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178

Query: 172 TAKKIYQNIKDGKLNA 187
               I + ++     +
Sbjct: 179 LLDLIMKRMERSVDKS 194

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  282 bits (725), Expect = 2e-98
 Identities = 69/180 (38%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
           S   + S S IFK I+IGD  VGK+CL ++F   +F      TIGV+F  R +++ GE+I
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 65  KLQIWDTAGQERFR-AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV- 122
           K+Q+WDTAGQERFR ++ + YYR     + VYD+T  ++++ L +W+ + K     N + 
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129

Query: 123 IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT---GENVEQAFLETAKKIYQN 179
             L+GNK DL  +  V  D A+KFA+ + +   E SA      ++VE  F+  A K+  +
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  279 bits (717), Expect = 2e-97
 Identities = 66/163 (40%), Positives = 99/163 (60%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K  ++GD GVGKS ++ +F E  F P+   TIG  F T+ ++   E  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           RFRA+   YYRG+A A++VYDIT+  T++ L +W+ + +    P+ V+ + GNK DL   
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           R+V   +AK +A+    IFVE SA    N+ + F+E +++I  
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  280 bits (718), Expect = 4e-97
 Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 6/180 (3%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
            S+  +S    +K ++ GD  VGKS  L +  + +F  +   T+GV+F  + + V GE+ 
Sbjct: 18  GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERT 77

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF 124
            LQ+WDTAGQERFR++ +SY+R A G L++YD+T   ++ ++  W+   ++  +    I 
Sbjct: 78  VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM 137

Query: 125 LIGNKMDL------EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           L+GNK D+      EG + V     +K A     +F E SA  G N+ +A L  A+++ +
Sbjct: 138 LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  279 bits (715), Expect = 6e-97
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 4/174 (2%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIW 69
           S+    K +++GD   GK+ L   F ++ F      TIG++F  R I + G   + LQIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT---NPNTVIFLI 126
           D  GQ     +   Y  GA G L+VYDIT   ++ +L  W T  K ++       ++ L+
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 127 GNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           GNK+DLE  R ++ ++  +F +EN       SA TG++V   F + A +I    
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  275 bits (707), Expect = 8e-96
 Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 6/175 (3%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
             S +FK I++GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP----NTVIFLI 126
           TAGQERFR++   +YRG+   L+ + +    ++ +LS+W  +     +     +    ++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 127 GNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           GNK+D+   R V  +EA+ +  +N D  + E SA    NV  AF E  +++    
Sbjct: 123 GNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  276 bits (708), Expect = 1e-95
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 9/197 (4%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIE 58
           +K        + +   K  ++G+  VGKS L+  FT +  KF+ D   T GVE     + 
Sbjct: 6   VKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVT 65

Query: 59  VHGEKIKLQIW--DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL 116
           +    + ++++  DTAG + ++     Y+ G   A++V+D++   ++    +W    K+ 
Sbjct: 66  IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125

Query: 117 ---TNPNTVIFLIGNKMDLEGSRD-VRYDEAKKFAEENDLIFVEASA-MTGENVEQAFLE 171
                      L+ NK DL   R  VR D A+ +A  N L F + SA   G++ +  FL 
Sbjct: 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLS 185

Query: 172 TAKKIYQNIKDGKLNAN 188
            A   Y+N +D      
Sbjct: 186 IATTFYRNYEDKVAAFQ 202

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  276 bits (707), Expect = 2e-95
 Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 1/205 (0%)

Query: 3   TMSSSGQY-SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 61
            MS+ G + +    FK + +G+  VGK+ L+ +F    F      TIG++F ++ + +  
Sbjct: 3   GMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 62

Query: 62  EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNT 121
             ++LQ+WDTAG ERFR++  SY R +  A++VYDIT  +++   + W+ D +     + 
Sbjct: 63  RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122

Query: 122 VIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           +I L+GNK DL   R V  +E ++ A+E +++F+E SA  G NV+Q F   A  +     
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182

Query: 182 DGKLNANMTESGVQHKERGGPASLG 206
               +          K +  P S G
Sbjct: 183 TQDRSREDMIDIKLEKPQEQPVSEG 207

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  274 bits (702), Expect = 6e-95
 Identities = 64/178 (35%), Positives = 96/178 (53%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
               + S     K  ++GD GVGKS ++ +F +  F  +   TIG  F T+ +    E  
Sbjct: 13  GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH 72

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF 124
           K  IWDTAGQERF ++   YYRG+A A++VYDIT++ ++  L  W+ + K     N V+ 
Sbjct: 73  KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
           + GNK DL   R+V   +AK++AE    I VE SA    N+E+ F   +++I      
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 190

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  274 bits (702), Expect = 1e-94
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 16/219 (7%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           M+S        + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ + V    
Sbjct: 1   MTSR----KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP---- 119
           + +QIWDTAGQERF+++  ++YRGA   ++V+D+T  +T+  L SW  +     +P    
Sbjct: 57  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116

Query: 120 NTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           N    ++GNK+DLE  +            +N++ + E SA    NVEQAF   A+   + 
Sbjct: 117 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

Query: 180 IKDGKLNANMTESGVQHKERGGPASLGDSSSSDKPNCSC 218
             + +L     E     K         + + +   +CSC
Sbjct: 177 ETEVELYNEFPEPIKLDKN--------ERAKASAESCSC 207

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  270 bits (692), Expect = 1e-93
 Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 1/167 (0%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
                K +++G+  VGKS ++ ++ +  F  D   TIGV+F  R I+V+ E ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQE F A+T++YYRGA   ++V+  T R ++  +SSW          +    L+ NK+D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           L     ++ +EA+  A+   L F   S     NV + F   A+K  Q
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  266 bits (681), Expect = 2e-91
 Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 40/209 (19%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK----- 65
                +K +++G+  VGKS ++ + T+  F  +   TIG  F T ++ ++   IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 66  --------------------------------LQIWDTAGQERFRAVTRSYYRGAAGALM 93
                                             IWDTAGQER+ ++   YYRGA  A++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 94  VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI 153
           V+DI+  +T +   +W+   K   + N +I L+ NK+D      V   E +K+A++N+L+
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKN-KFQVDILEVQKYAQDNNLL 179

Query: 154 FVEASAMTGENVEQAFLETAKKIYQNIKD 182
           F++ SA TG N++  F   A++IY+NI +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  265 bits (679), Expect = 6e-91
 Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVE-FGTRIIEVHGEKIKLQIW 69
                +K  +IGD GVGK+  +++  + +F  +   T+G        ++  G  IK  +W
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66

Query: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
           DTAGQE+   +   YY GA+GA++ +D+T R T  +L+ W+ + + +      I +  NK
Sbjct: 67  DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126

Query: 130 MDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           +D++  + +      +  +  +  + E SA T  N    FL  A+       
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  259 bits (664), Expect = 3e-89
 Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 11/185 (5%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           MSS        I K II+GD GVGK+ L+H++   K+      TIG +F T+ + V G+K
Sbjct: 1   MSSR----KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK 56

Query: 64  -IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNT- 121
              +Q+WDTAGQERF+++  ++YRGA   ++VYD+T  S++ ++ SW  +     N N+ 
Sbjct: 57  VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSP 116

Query: 122 ---VIFLIGNKMDLEGS-RDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKI 176
                 ++GNK+D E S + V    A++ A+   D+     SA    NV+ AF E A+  
Sbjct: 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

Query: 177 YQNIK 181
            Q  +
Sbjct: 177 LQQNQ 181

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  256 bits (655), Expect = 3e-87
 Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 3/179 (1%)

Query: 3   TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 62
            M+S+ Q      FK +++GD G GK+  + +    +F      T+GVE    +   +  
Sbjct: 3   HMASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62

Query: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV 122
            IK  +WDTAGQE+F  +   YY  A  A++++D+T R TY ++ +W  D       N  
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 121

Query: 123 IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           I L GNK+D++  +     ++  F  + +L + + SA +  N E+ FL  A+K+  +  
Sbjct: 122 IVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  233 bits (597), Expect = 3e-79
 Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 3/166 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++G+  VGKS ++ +F    F  +   TIG  F T+ + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD---L 132
           RF ++   YYR A  AL+VYD+T+  ++     W+ +     + + +I L+GNK+D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            G R V  +E +K AEE  L+F E SA TGENV   FL   +KI  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  217 bits (555), Expect = 1e-72
 Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 6/178 (3%)

Query: 3   TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 62
           +M        S   K +++G  GVGKS L  QF +  F+ D   TI   + T+I  V G 
Sbjct: 1   SMDPP----PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGI 55

Query: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV 122
             +L I DTAGQE F A+   Y R   G L+V+ I  R ++N +    T    + + +  
Sbjct: 56  PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF 115

Query: 123 -IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
            + L+GNK DLE  R V   EA  F   + + + EASA    NV++AF +  + + + 
Sbjct: 116 PVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  216 bits (552), Expect = 5e-72
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 2/177 (1%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
           +   Q     IFK +++G+ GVGKS L   F   +           +   R I V  E++
Sbjct: 13  NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV 72

Query: 65  KLQIWDTAGQERFRAVTRS-YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL-TNPNTV 122
            L ++D   Q       R    +     L+V+ +T R +++ +   L   +    + +  
Sbjct: 73  TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 132

Query: 123 IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           + L+GNK DL  SR+V  +E +  A       +E SA    N  + F    ++I   
Sbjct: 133 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  212 bits (543), Expect = 5e-71
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 2/166 (1%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           +FK +++G+ GVGKS L   F   +           +   R I V  E++ L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 75  ERFRAVTRS-YYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDL 132
                  +    +     L+V+ +T R +++ +   L        + +  + L+GNK DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
             SR+V  +E +  A       +E SA    N  + F    ++I  
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  211 bits (540), Expect = 3e-70
 Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 2/179 (1%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
              G  +   + K I++G  GVGKS L  QF   +F+ D   T    +  + + + GE++
Sbjct: 8   GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEV 66

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVI 123
           ++ I DTAGQE + A+  +Y+R   G L V+ IT   ++   + +      +  + N   
Sbjct: 67  QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126

Query: 124 FLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
            L+GNK DLE  R V  +EAK  AE+ ++ +VE SA T  NV++ F +  ++I     +
Sbjct: 127 LLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  207 bits (530), Expect = 2e-68
 Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 4/188 (2%)

Query: 4   MSSSGQ--YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 61
           M+++     +   + K I++G  GVGKS L  QF   +F+ D   T    +  + + + G
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59

Query: 62  EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPN 120
           E++++ I DTAGQE + A+  +Y+R   G L V+ IT   ++   + +      +  + N
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
               L+GNK DLE  R V  +EAK  AE+ ++ +VE SA T  NV++ F +  ++I    
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179

Query: 181 KDGKLNAN 188
            +     N
Sbjct: 180 MEDSKEKN 187

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  206 bits (526), Expect = 2e-68
 Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K I++G  GVGKS L  QF   +F+ D   T    +  + + + GE++++ I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 63

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
            + A+  +Y+R   G L V+ IT   ++   + +      +     V   L+GNK DLE 
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            R V  +EAK  A++ ++ +VE SA T  NV++ F +  ++I  
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  201 bits (514), Expect = 2e-66
 Identities = 36/180 (20%), Positives = 76/180 (42%), Gaps = 11/180 (6%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEK---IKLQIWD 70
            K +I+G+ G GK+ LL Q  + K         T+G++     I++  ++   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
            AG+E F +    +    A  L VYD+++  +  + +  WL + K     ++ + L+G  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTH 121

Query: 130 MDLEGSRDVR---YDEAKKFAEENDLIFV-EASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           +D+   +  +       K+   +     + +   +       A  +  K I     + K+
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  199 bits (508), Expect = 3e-65
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 2/178 (1%)

Query: 2   KTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 61
           +              K +I+G   VGK+ L HQF E +F      T+   + ++I+ +  
Sbjct: 11  RENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGK 69

Query: 62  EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPN 120
           ++  L + DTAGQ+ +  +  S+  G  G ++VY +T   ++  + S             
Sbjct: 70  DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129

Query: 121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
             + L+GNK DL   R+V+  E KK AE     F+E+SA   +  +  F +  ++I +
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR 187

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  197 bits (503), Expect = 8e-65
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 4/170 (2%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           ++ +++GD GVGK+ L   F  ++        +G +   R + V GE   L + DT   E
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63

Query: 76  RFRAVT--RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDL 132
           +        S  +G +  ++VY I  R ++   S      +      +  I L+GNK DL
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
              R+V  +E +  A   D  F+E SA    NV + F    +++    +D
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD 173

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  196 bits (501), Expect = 2e-64
 Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 4/181 (2%)

Query: 1   MKTMSSSG-QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 59
           + +M++S         +K +++GD GVGKS L  QF ++ F+ D   TI   +  +  E+
Sbjct: 3   LGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI 61

Query: 60  HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP 119
             +   L + DTAGQE F A+   Y R   G L+VY +T ++++ H+  +      + + 
Sbjct: 62  DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121

Query: 120 NTV-IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE-NVEQAFLETAKKIY 177
            +  + L+ NK+DL   R V  D+ K+ A + ++ ++E SA     NV++ F +  + I 
Sbjct: 122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

Query: 178 Q 178
           Q
Sbjct: 182 Q 182

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  196 bits (500), Expect = 2e-64
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 2/167 (1%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
             S   K  I+G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ D
Sbjct: 2   PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVD 60

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNK 129
           TAGQ+ +    ++Y     G ++VY +T   ++  +        ++       I L+GNK
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 120

Query: 130 MDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            DL   R + Y+E K  AE  +  F+E+SA   +     F     + 
Sbjct: 121 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  194 bits (496), Expect = 6e-64
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  Q  +  F+ +C  TI   +  + + + GE   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
            + A+   Y R   G L V+ I    ++  +  +    K + + + V + L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           +R V   +A+  A    + ++E SA T + VE AF    ++I Q+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  194 bits (495), Expect = 1e-63
 Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           ++K +++G  GVGKS L   F   +  P+     G  +  R I V GE+  L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAE-AAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE 133
           +  R +           ++VY +T + ++   S      +     + V I L+GNK DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            SR+V  DE +  A   D  F+E SA    NV+  F    ++I  
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  192 bits (490), Expect = 7e-63
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF    F+     TI  +F  + IEV      L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
           +F ++   Y +   G ++VY +  + ++  +         +     V + L+GNK+DLE 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            R+V   E +  AEE    F+E SA +   V++ F E  +++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  191 bits (488), Expect = 3e-62
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 4/175 (2%)

Query: 6   SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 65
                + S   K  I G  GVGKS L+ +F  ++F+ +   T+   +      +  E + 
Sbjct: 19  YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVS 77

Query: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IF 124
           ++I DTAGQE        + R   G ++VYDIT R ++  +         +  P  V + 
Sbjct: 78  MEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE-NVEQAFLETAKKIYQ 178
           L+GNK DL+ SR V  +E +K A E    F E SA TGE N+ + F E  +++ +
Sbjct: 137 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  190 bits (484), Expect = 5e-62
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 3/168 (1%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           S  ++  + G  GVGKS L+ +F +  F      T+   +  ++I        LQI DT 
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTT 59

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKM 130
           G  +F A+ R         ++VY IT R +   L         +     +  I L+GNK 
Sbjct: 60  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           D   SR+V+  EA+  A      F+E SA    NV++ F E      +
Sbjct: 120 DESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  188 bits (479), Expect = 6e-61
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 4/194 (2%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
             S  ++ ++ G  GVGKS L+ +F +  F      TI   +  ++I        LQI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL--TNPNTVIFLIGN 128
           T G  +F A+ R         ++V+ +T + +   L         +  +  +  + L+GN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 129 KMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNAN 188
           K D    R+V   EA+  A+E    F+E SA    NV++ F E      +      ++  
Sbjct: 123 KCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGK 181

Query: 189 MTESGVQHKERGGP 202
            +    +     G 
Sbjct: 182 RSGKQKRTDRVKGK 195

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  186 bits (476), Expect = 7e-61
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+     TI   +  + +EV  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
           +F A+   Y +   G  +VY IT +ST+N L         + +   V + L+GNK DLE 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 SRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQ 178
            R V  ++ +  A +     F+E+SA +  NV + F +  ++I +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  186 bits (475), Expect = 3e-60
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 7/191 (3%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIEV 59
           M T S     S +  ++ ++IG+ GVGKS L + F       D     +G +   R + V
Sbjct: 23  MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV 82

Query: 60  HGEK---IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL 116
            GE    I L +W+  G+  +  +     +     L+VY IT R+++   S      +  
Sbjct: 83  DGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA 140

Query: 117 TNPNTV-IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK 175
                + I L+GNK DL   R+V   E +  A   D  F+E SA    NV++ F    ++
Sbjct: 141 RQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ 200

Query: 176 IYQNIKDGKLN 186
           +       + N
Sbjct: 201 VRLRRDSKEKN 211

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  185 bits (471), Expect = 8e-60
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 4/172 (2%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  + + + GE   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
            + A+   Y R   G L V+ I    ++  ++ +    K + + + V + L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP- 139

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN 186
           +R V   +A + A+   + F+E SA T + VE AF    ++I Q  +  KLN
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY-RMKKLN 190

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  185 bits (471), Expect = 9e-60
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 3/183 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  + + + GE   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG 134
            + A+   Y R   G L V+ I    ++  +  +    K + +   V + L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMTESGV 194
           SR V   +A+  A    + F+E SA T + V+ AF    ++I ++ +    +    +   
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKS 182

Query: 195 QHK 197
           + K
Sbjct: 183 KTK 185

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  178 bits (455), Expect = 2e-57
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 8/179 (4%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
            +   Q          I+G  G GKS L  +F  ++F+ +    +   + +    V  + 
Sbjct: 12  ENLYFQGPLEV--NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQP 68

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTNPN 120
           + L++ DTA  +  R   R Y   A   L+VY +  R +++  SS+   L      T  +
Sbjct: 69  VHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS 127

Query: 121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT-GENVEQAFLETAKKIYQ 178
               L+GNK+D+   R V   E    A     +F E SA    E+V+  F E  ++  +
Sbjct: 128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  187 bits (475), Expect = 1e-56
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 12/186 (6%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 60
            +  S      +    K  +IGD   GK+ LL Q   + F P    T G+   T+     
Sbjct: 27  EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI 86

Query: 61  --------GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD 112
                    ++     WD  GQE   A  + +   ++  +++ D     T ++   WL  
Sbjct: 87  KGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRH 143

Query: 113 TKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET 172
            +      + + ++ NK+D   S ++   +  +     +  F   S   G+ VE      
Sbjct: 144 IEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

Query: 173 AKKIYQ 178
              +  
Sbjct: 203 KSAVLH 208

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  175 bits (447), Expect = 3e-56
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 7/168 (4%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEK---IKLQIWDT 71
           ++ ++IG+ GVGKS L + F       D     +G +   R + V GE    I L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKM 130
            G+  +  +     +     L+VY IT R+++   S      +      +  I L+GNK 
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           DL   R+V   E +  A   D  F+E SA    NV++ F    +++  
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRL 172

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  175 bits (445), Expect = 6e-56
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 13/178 (7%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            +  ++GD   GKS L+H+F    +      T   ++  + + V G+   + I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TESEQY-KKEMLVDGQTHLVLIREEAGAP 65

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-----TKNLTNPNTVIFLIGNKM 130
             +     +   A   + V+ +   +++  +S           +        +    +++
Sbjct: 66  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120

Query: 131 DLEGSRDVRYDEAKKF-AEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNA 187
                R V    A+   A+     + E  A  G NV++ F E A+K+    K  +L A
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  170 bits (434), Expect = 3e-54
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 11/170 (6%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K  I+G++  GKS L+H++    ++ +     G  F  + I V G+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDL-- 132
             +     +       + V+ +    ++  + ++     +  N + V + L+G +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 133 EGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQAFLETAKKIYQNIK 181
              R +    A+K + +     + E  A  G NVE+ F + A+K+    K
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  143 bits (363), Expect = 2e-43
 Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 6/184 (3%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
            +    +     K +++GD  VGK+CLL  F++ +       T+   F   +++   E+ 
Sbjct: 13  GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEF 71

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVI 123
            L +WDTAGQE +  +    Y  +   L+ + +  R++++++S+ W  + K+        
Sbjct: 72  ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTAKT 130

Query: 124 FLIGNKMDL--EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
            L+G K+DL  +GS DV   E     ++   + ++EAS++    + + F ++   I+ N 
Sbjct: 131 VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

Query: 181 KDGK 184
              K
Sbjct: 191 PVPK 194

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  133 bits (336), Expect = 1e-39
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 14/179 (7%)

Query: 8   GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQ 67
           G  S S   K + +GD  VGK+CLL  +T   F  D   T+   F +  + V+G  + L 
Sbjct: 1   GSMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59

Query: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLI 126
           +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + K+   P   I L+
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIVLV 118

Query: 127 GNKMDLEGSRD----------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAK 174
           G K+DL   +           +   + ++  +      ++E S+ + ENV+  F    +
Sbjct: 119 GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  129 bits (325), Expect = 2e-37
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 60
            ++M+           K +++GD G GK+ LL  F +  F      T+   +    ++V 
Sbjct: 20  FQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVK 78

Query: 61  GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNP 119
           G+ + L IWDTAGQ+ +  +   +Y  A+  L+ +D+T  ++++++ + W  +  +    
Sbjct: 79  GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF-CK 137

Query: 120 NTVIFLIGNKMDLEGSRD------------VRYDEAKKFAEE-NDLIFVEASAMTGENVE 166
              I ++G K DL   +             V Y   ++ A     + ++E SA   +NV 
Sbjct: 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197

Query: 167 QAFLETAK 174
             F E A+
Sbjct: 198 AVFQEAAE 205

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  128 bits (323), Expect = 2e-37
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 17/184 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD   GK+CLL  F++ +F      T+   +   I EV G++++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 85

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           +  +    Y      LM + +    +  ++   W+ + K+   PN  I L+ NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKH-FCPNVPIILVANKKDLRSD 144

Query: 136 RD------------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
                         VR D+ +  A       ++E SA T E V + F ETA +     + 
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATRAALQKRY 203

Query: 183 GKLN 186
           G  N
Sbjct: 204 GSQN 207

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  127 bits (320), Expect = 5e-37
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 16/185 (8%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           +   G +  +   K +I+GD   GK+CLL  F++ +F      T+  E     IEV G++
Sbjct: 14  LVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQ 72

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTV 122
           ++L +WDTAGQE +  +    Y      LM + I    +  ++   W  + K+   PN  
Sbjct: 73  VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVP 131

Query: 123 IFLIGNKMDL------------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAF 169
           I L+GNK DL                 VR +E +  A   +   ++E SA T E V + F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

Query: 170 LETAK 174
               +
Sbjct: 192 EMATR 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  125 bits (316), Expect = 3e-36
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++GD  VGK+CLL  +T   F  +   T+  +  +  + V G+ + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDL-- 132
            +  +    Y      L+ + +   +++ N  + W  + ++   PNT I L+G K+DL  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRD 148

Query: 133 ----------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAK 174
                     +    + Y +    A+E   + ++E SA+T   ++  F E  +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  124 bits (314), Expect = 7e-36
 Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 12/181 (6%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           S S   K + +GD  VGK+C+L  +T  KF  D   T+   F +  + V G+ + L +WD
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWD 63

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNK 129
           TAGQE +  +    YRGA   ++ + +  +++Y ++   W+ + +    PN  I L+G K
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR-FAPNVPIVLVGTK 122

Query: 130 MDL--------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           +DL        + +  +   + ++  ++     ++E S+ T +NV+  F    K + Q  
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182

Query: 181 K 181
           +
Sbjct: 183 R 183

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  122 bits (308), Expect = 2e-35
 Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD  VGK+CLL  +T   F  +   T+  +  +  + V G+ + L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL---- 132
           +  +    Y     +L+ + +   +++ ++ +          PNT I L+G K+DL    
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 133 --------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAK 174
                   +    + Y +    A+E   + ++E SA+T   ++  F E  +
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  119 bits (299), Expect = 4e-34
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD   GK+ LLH F +  F  +   T+   +     E+  ++I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNTVIFLIGNKMDL--- 132
           +  V    Y  +   L+ +DI+R  T + +   W  + +    PNT + L+G K DL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDLRTD 126

Query: 133 ---------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGEN-VEQAFLETA 173
                         V YD+    A++     ++E SA+  EN V   F   A
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF-HVA 177

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  119 bits (300), Expect = 7e-34
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 17/171 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD  VGK+ L+  +T   +  +   T   +  + ++ V G  ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           F  +    Y      L+ + +   S++ +    W+ + +    P   I L+G + DL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139

Query: 136 RD------------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETA 173
                         V  + AK  AEE     ++E SA+T +N+++ F + A
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF-DAA 189

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  118 bits (297), Expect = 2e-33
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 18/186 (9%)

Query: 3   TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 62
              S    + +   K +++GD   GK+ LLH F +  F  +   T+   +     E+  +
Sbjct: 16  PRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQ 74

Query: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNPNT 121
           +I+L +WDT+G   +  V    Y  +   L+ +DI+R  T + +   W  + +    PNT
Sbjct: 75  RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPNT 133

Query: 122 VIFLIGNKMDL------------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGEN-VEQ 167
            + L+G K DL                 V YD+    A++     ++E SA+  EN V  
Sbjct: 134 KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRD 193

Query: 168 AFLETA 173
            F   A
Sbjct: 194 IF-HVA 198

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  116 bits (291), Expect = 9e-33
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++GD  VGK+CLL  +    F  +   T+  +     + V G++  L ++DTAGQE
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
            +  +    Y      L+ + +   +++ +    W+ + K    PN    LIG ++DL  
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRD 136

Query: 135 SRD------------VRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAK 174
                          +  ++ +K A+E     +VE SA+T + ++  F E   
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  116 bits (291), Expect = 2e-32
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 17/174 (9%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++GD+  GK+ +L    +  +      T+   +    +E   ++++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSP 86

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDL-- 132
            +  V    Y  +   L+ +DI+R  T  + L  W T+  +   P+T + LIG K DL  
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD-YCPSTRVLLIGCKTDLRT 145

Query: 133 ----------EGSRDVRYDEAKKFAEENDLI-FVEASAMTGE-NVEQAFLETAK 174
                     +    + Y++    A++     ++E SA T E ++   F   + 
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 199

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  102 bits (254), Expect = 1e-26
 Identities = 41/222 (18%), Positives = 71/222 (31%), Gaps = 66/222 (29%)

Query: 22  GDMGVGKSCLLHQFTEQK---FMPDCPHTIG-VEFGTRIIEVH--------------GEK 63
           G  G+GKSCL ++F       F  D    +   +FG R++                   +
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 64  IKLQIW-------DTAGQERFRAVTRSYYRGAA--------------------------- 89
            K+ I        D   Q       + Y + AA                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 90  ----------GALMVYDITR--RSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSR 136
                     G L+  D++R     ++    ++++  N        I ++  K D    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            +R       +++N L  VE SA +  NV+ AF    + I +
Sbjct: 215 YIRDAHTFALSKKN-LQVVETSARSNVNVDLAFSTLVQLIDK 255

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 92.9 bits (231), Expect = 1e-23
 Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 17/184 (9%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----------TIGVEFGT-RIIEVHGEKI 64
           FK +  G    GK+  L     +                  T+  +F    I EV G K 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNL----TNPN 120
           +  ++   GQ  + A  +   RG  G + V D        +  S     +NL       +
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 121 TVIFLIG-NKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
            V  +I  NK DL  +  V          E     +EA A  G+ V +   E ++ +   
Sbjct: 135 DVPIVIQVNKRDLPDALPVE-MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193

Query: 180 IKDG 183
           +  G
Sbjct: 194 VAGG 197

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 87.0 bits (215), Expect = 2e-20
 Identities = 44/187 (23%), Positives = 89/187 (47%), Gaps = 17/187 (9%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 60
           +K  + +   +   + K +++GD  VGK+CLL  +T   F  +   T+  +  +  + V 
Sbjct: 141 IKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVD 199

Query: 61  GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDTKNLTNP 119
           G+ + L +WDTAG E +  +    Y      L+ + +   ++++H+ + W  + ++   P
Sbjct: 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH-HCP 258

Query: 120 NTVIFLIGNKMDL------------EGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVE 166
           NT I L+G K+DL            +    + Y +    A+E   + ++E SA+T   ++
Sbjct: 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318

Query: 167 QAFLETA 173
             F + A
Sbjct: 319 TVF-DEA 324

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 68.8 bits (169), Expect = 7e-15
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 25/180 (13%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            + +I+G  G GK+ +L++    + +   P TIG  F    +      +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKM 130
             R   R YY   A  + V D T +         L   L + + L +      L+  NK 
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE-EELQD---AALLVFANKQ 129

Query: 131 DLEGSRDVRYDEAKKFAEENDL-----IFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           D  G+      E  K     +L       V +SA+ GE + +        +   IK+ +L
Sbjct: 130 DQPGALSA--SEVSKELNLVELKDRSWSIVASSAIKGEGITEGL----DWLIDVIKEEQL 183

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 25/179 (13%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++G    GK+ +L++      +   P T+G       ++     I  ++WD  GQ   R
Sbjct: 26  LMLGLDNAGKTSILYRLHLGDVVTTVP-TVG--VNLETLQYKN--ISFEVWDLGGQTGVR 80

Query: 79  AVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLE 133
              R Y+      + V D T R       + L + L +   L      + LI  NK DL 
Sbjct: 81  PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE-DELRK---SLLLIFANKQDLP 136

Query: 134 GSRDVRYDE-AKKFA----EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNA 187
            +      E A++             V++S+ TG+ + +        + + +++  L A
Sbjct: 137 DAASE--AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM----DWLVERLREQGLGA 189

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 66.8 bits (164), Expect = 3e-14
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 25/176 (14%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +I+G  G GK+ +L++    + +   P TIG  F    +      +K Q+WD  G    R
Sbjct: 11  LILGLDGAGKTTILYRLQVGEVVTTIP-TIG--FNVETVTYKN--LKFQVWDLGGLTSIR 65

Query: 79  AVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLE 133
              R YY      + V D   R     + + L + L + + L      I ++  NK D+E
Sbjct: 66  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRK---AILVVFANKQDME 121

Query: 134 GSRDVRYDE-AKKFA----EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
            +      E A        ++      + SA  G  +++A     + + + +K  +
Sbjct: 122 QAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM----EWLVETLKSRQ 171

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 66.4 bits (163), Expect = 3e-14
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 25/176 (14%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++G    GK+ +L++    + +   P TIG  F    +E     I   +WD  GQ++ R
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN--ISFTVWDVGGQDKIR 58

Query: 79  AVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLE 133
            + R Y++   G + V D   R         L   L +   L +    + L+  NK DL 
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRD---AVLLVFANKQDLP 114

Query: 134 GSRDVRYDE-AKKFA----EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
            + +    E   K         +       A +G+ + +        +   +++ K
Sbjct: 115 NAMNA--AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL----DWLSNQLRNQK 164

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 66.9 bits (164), Expect = 5e-14
 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 19/160 (11%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++G    GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R
Sbjct: 22  LMLGLDNAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLR 76

Query: 79  AVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLE 133
           +  R+Y+    G + V D   R         L S L + + L        LI  NK DL 
Sbjct: 77  SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE-ERLAG---ATLLIFANKQDLP 132

Query: 134 GSRDVRYDEAKKFA----EENDLIFVEASAMTGENVEQAF 169
           G+        +         +       SA+TGE++    
Sbjct: 133 GALSCN-AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 19/175 (10%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K II+G    GK+ +L+QF+  + +   P TIG       I ++    +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKM 130
             R+   +YY      ++V D T R     T   L   L   ++L        LI  NK 
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-EDLRK---AGLLIFANKQ 127

Query: 131 DLEGSRDVRYDEAKKFA----EENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           D++    V  + ++       +++        A+TGE + Q       ++   ++
Sbjct: 128 DVKECMTVA-EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K II+G    GK+ +L+QF+  + +   P TIG       I ++    +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG--SNVEEIVINN--TRFLMWDIGGQE 76

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKM 130
             R+   +YY      ++V D T R     T   L   L   ++L        LI  NK 
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-EDLRK---AGLLIFANKQ 132

Query: 131 DLEGSRDVRYDEAKKFA----EENDLIFVEASAMTGENVEQAF 169
           D++    V  + ++       +++        A+TGE + Q  
Sbjct: 133 DVKECMTVA-EISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 21/176 (11%)

Query: 19  IIIGDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           + +G    GK+ ++++   +  +     P TIG  F     +     +   ++D +GQ R
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILP-TIG--FSIEKFKSSS--LSFTVFDMSGQGR 79

Query: 77  FRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
           +R +   YY+     + V D + R         L + L    ++ +    I    NKMDL
Sbjct: 80  YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH-PDIKHRRIPILFFANKMDL 138

Query: 133 EGSRDVRYDEAKKFA----EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
             +       ++       ++       + A+ GE +++        +   I+  K
Sbjct: 139 RDAVTSV-KVSQLLCLENIKDKPWHICASDAIKGEGLQEGV----DWLQDQIQTVK 189

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 66.2 bits (161), Expect = 3e-13
 Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 17/182 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQE 75
           K +++G  G GKS +        +       +G         +     + L +WD  GQ+
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63

Query: 76  RFRAVT-----RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGN 128
            F            ++     + V+D+        +  +    K L   +P+  IF++ +
Sbjct: 64  VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123

Query: 129 KMDL--EGSRDVRYDEAKKFAEEN------DLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           KMDL     R+  +    K   E         +    +++  E++ +A+ +    +  N+
Sbjct: 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNM 183

Query: 181 KD 182
            +
Sbjct: 184 SN 185

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 64.2 bits (156), Expect = 5e-13
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 22/178 (12%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAG 73
           + +++G    GKS +      +    +      T  +         +   +  QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS---NSSFVNFQIWDFPG 78

Query: 74  QERFRAVT---RSYYRGAAGALMVYDITRRST--YNHLSSWLTDTKNLTNPNTVIFLIGN 128
           Q  F   T      +RG    + V D           L   ++    + NP+    +  +
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIH 137

Query: 129 KMDL-------EGSRDVRY---DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           K+D        E  RD+     D+      E   +    +++   ++ +AF +  +K+
Sbjct: 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKL 195

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 63.9 bits (156), Expect = 6e-13
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 38/193 (19%)

Query: 4   MSSSGQYS------------YSYIF-----KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH 46
           M SS  +             +S IF     + +++G    GK+ +L++    + +   P 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP- 59

Query: 47  TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS----T 102
           TIG  F    +E     I   +WD  GQ++ R + R Y++   G + V D   R     +
Sbjct: 60  TIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQES 115

Query: 103 YNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLEGSRDVRYDEAKKFAEENDL-----IFVE 156
            + L   L +   L +    + L+  NK D+  +  V   E         L         
Sbjct: 116 ADELQKMLQE-DELRD---AVLLVFANKQDMPNAMPV--SELTDKLGLQHLRSRTWYVQA 169

Query: 157 ASAMTGENVEQAF 169
             A  G  +    
Sbjct: 170 TCATQGTGLYDGL 182

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 23/175 (13%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           +++G    GK+ LL Q   +      P T G  F  + ++  G   KL +WD  GQ + R
Sbjct: 20  LLLGLDNAGKTTLLKQLASEDISHITP-TQG--FNIKSVQSQG--FKLNVWDIGGQRKIR 74

Query: 79  AVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLE 133
              RSY+      + V D   R     T   L+  L + + L+    V  LI  NK DL 
Sbjct: 75  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE-EKLSC---VPVLIFANKQDLL 130

Query: 134 GSRDVRYDEAKKFA----EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
            +     + A+        +        SA+TGE V+         + +N+   K
Sbjct: 131 TAAPAS-EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM----NWVCKNVNAKK 180

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 24/168 (14%)

Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+  ++     +F  D   T+G  F  R I      + +++WD  GQ RFR++   Y R
Sbjct: 34  GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQPRFRSMWERYCR 89

Query: 87  GAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE 142
           G +  + + D   +     + N L + L   +        + ++GNK DL G+ D    E
Sbjct: 90  GVSAIVYMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGALDE--KE 144

Query: 143 AKKFAEENDL------IFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
             +    + +       +   S    +N++       + + Q+ K  +
Sbjct: 145 LIEKMNLSAIQDREICCY-SISCKEKDNIDITL----QWLIQHSKSRR 187

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 20/165 (12%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK-IKLQIWDTAGQERF 77
           + +G    GK+ L  +    ++      +I     + I +V+  +   L + D  G E  
Sbjct: 11  LFVGLCDSGKTLLFVRLLTGQYRDTQT-SIT--DSSAIYKVNNNRGNSLTLIDLPGHESL 67

Query: 78  RA-VTRSYYRGAAGALMVYDIT-----RRSTYNHLSSWLTDTKNLTNPNTVIFLI-GNKM 130
           R  +   +   A   + V D        +     L   L D+  L   N+   LI  NK 
Sbjct: 68  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMAL--KNSPSLLIACNKQ 125

Query: 131 DLEGSRDVRYDEAKKF--AEENDLIFVE---ASAMTGENVEQAFL 170
           D+  ++       ++    E N L        S +   +   A L
Sbjct: 126 DIAMAKSA--KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 168

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 59.1 bits (144), Expect = 3e-11
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 28/160 (17%)

Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ LLH     +     P T      +  + +    IK   +D  G  + R + + Y+ 
Sbjct: 35  GKTTLLHMLKNDRLATLQP-TWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFP 89

Query: 87  GAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLEGSRDVRYD 141
              G + + D             L +       L +   V F+I GNK+D   +      
Sbjct: 90  EVNGIVFLVDAADPERFDEARVELDALFNI-AELKD---VPFVILGNKIDAPNAVSE--A 143

Query: 142 E-----------AKKFAEENDLIFVEA-SAMTGENVEQAF 169
           E             +  E    + V   S +      +AF
Sbjct: 144 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 59.4 bits (144), Expect = 4e-11
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 15/143 (10%)

Query: 5   SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 64
           S  G    SY    II G    GK+ LL   T     P    +        +     +  
Sbjct: 2   SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE-----PLSAADYDGS 55

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGAL--MVY-----DITRR--STYNHLSSWLTDTKN 115
            + + D  G  + R     Y +  A  +  +++        ++  +T   L   L+ T++
Sbjct: 56  GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES 115

Query: 116 LTNPNTVIFLIGNKMDLEGSRDV 138
                  I +  NK +L  +R  
Sbjct: 116 SCENGIDILIACNKSELFTARPP 138

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 29/163 (17%)

Query: 27  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 86
           GK+ LLH   + +     P T+     +  + + G  +    +D  G  + R V ++Y  
Sbjct: 37  GKTTLLHMLKDDRLGQHVP-TLH--PTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLP 91

Query: 87  GAAGALMVYDITRRS----TYNHLSSWLTDTKNLTNPNTVIFLI-GNKMDLEGSRDV--- 138
              G + + D         +   L S +TD + + N   V  LI GNK+D   +      
Sbjct: 92  AINGIVFLVDCADHERLLESKEELDSLMTD-ETIAN---VPILILGNKIDRPEAISEERL 147

Query: 139 -------RYDEAKKFAEENDL----IFVEA-SAMTGENVEQAF 169
                       K      +L    + V   S +  +   + F
Sbjct: 148 REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           II G    GK+ LL   T     P    +        +     +   + + D  G  + R
Sbjct: 52  IIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE-----PLSAADYDGSGVTLVDFPGHVKLR 105

Query: 79  AVTRSYYRGAAGAL--MVY------DITR-RSTYNHLSSWLTDTKNLTNPNTVIFLI-GN 128
                Y +  A  +  +++      D  +  +T   L   L+ T+  +  N +  LI  N
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE-SSCENGIDILIACN 164

Query: 129 KMDLEGSRDV 138
           K +L  +R  
Sbjct: 165 KSELFTARPP 174

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 25/194 (12%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 60
             T             + +++G    GK+ +L++    + +   P TIG  F    +E  
Sbjct: 151 NWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYK 207

Query: 61  GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDTKNL 116
              I   +WD  GQ++ R + R Y++   G + V D   R         L   L +   L
Sbjct: 208 N--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DEL 264

Query: 117 TNPNTVIFLI-GNKMDLEGSRDVRYDE-AKKFA----EENDLIFVEASAMTGENVEQAFL 170
            +    + L+  NK DL  + +    E   K         +       A +G+ + +   
Sbjct: 265 RD---AVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL- 318

Query: 171 ETAKKIYQNIKDGK 184
                +   +++ K
Sbjct: 319 ---DWLSNQLRNQK 329

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 23/178 (12%), Positives = 60/178 (33%), Gaps = 18/178 (10%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 79
           ++G    GKS +          P     +       +       I L + +  GQ  +  
Sbjct: 4   LMGVRRCGKSSICKVVF-HNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNYFE 61

Query: 80  VT---RSYYRGAAGALMVYDITR--RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL-- 132
            +      ++     + V D      +   +L+  +     + NP+  I ++ +K+D   
Sbjct: 62  PSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLS 120

Query: 133 -----EGSRDV---RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
                +  RD+     +E  +   +   +    +++   ++ +AF    +K+   +  
Sbjct: 121 EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSF 178

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 46.4 bits (111), Expect = 9e-07
 Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 29/135 (21%)

Query: 54  TR-IIE--VHGEKIKLQIWDTAGQ------------ERFRAVTRSYYRGAAGALMVYDIT 98
           TR ++   +H + + L I DTAG             ER           A   L + D T
Sbjct: 39  TRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIER----AWQEIEQADRVLFMVDGT 94

Query: 99  RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS 158
                +    W      L     +  ++ NK D+ G       E    +E N    +  S
Sbjct: 95  TTDAVDPAEIWPEFIARLPAKLPIT-VVRNKADITG-------ETLGMSEVNGHALIRLS 146

Query: 159 AMTGENVEQAFLETA 173
           A TGE V+   L   
Sbjct: 147 ARTGEGVDV--LRNH 159

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 28/150 (18%)

Query: 54  TR-IIE--VHGEKIKLQIWDTAGQ------------ERFRAVTRSYYRGAAGALMVYDIT 98
           TR  IE     +K   ++ DTAG              R    +R     A   L + D+ 
Sbjct: 268 TRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRR----SRMKMAEADLILYLLDLG 323

Query: 99  RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS 158
                + L+           P      + NK+D   + D                 +  S
Sbjct: 324 TERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADALIRAIADGTGTE---VIGIS 378

Query: 159 AMTGENVEQAFLETAKKIYQNIKDGKLNAN 188
           A+ G+ ++   L+    +   +K+      
Sbjct: 379 ALNGDGIDT--LKQH--MGDLVKNLDKLHE 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 55/196 (28%)

Query: 17  KYIII-GDMGVGKSCL----LHQFTEQKFMPDCPH--TIGVEFGTR-IIEV--------- 59
           K ++I G +G GK+ +       +  Q  M        +        ++E+         
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 60  --------HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLT 111
                   H   IKL+I     + R    ++ Y       L+V                 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CLLVLL--------------- 251

Query: 112 DTKNLTNPNTV-IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS-AMTGENVEQAF 169
              N+ N      F +  K+ L  +R  +  +    A    +     S  +T + V+   
Sbjct: 252 ---NVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 170 LETAKKIYQNIKDGKL 185
               K +  + +   L
Sbjct: 308 ---LKYL--DCRPQDL 318

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 29/162 (17%)

Query: 20  IIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTR-----IIEVHGEKIKLQIWDTA 72
           + G   VGKS  ++    Q    + D   T      T       +E+H     + + DT 
Sbjct: 39  VAGRRNVGKSSFMNALVGQNVSIVSDYAGT------TTDPVYKSMELHPIG-PVTLVDTP 91

Query: 73  G-------QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL 125
           G               R  +  A   ++V D       + + +   + +          +
Sbjct: 92  GLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEME------IPFVV 145

Query: 126 IGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167
           + NK+D+ G +        +   E  ++ V  SA+  +  + 
Sbjct: 146 VVNKIDVLGEKAEELKGLYESRYEAKVLLV--SALQKKGFDD 185

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 37/152 (24%)

Query: 54  TR-IIE--VHGEKIKLQIWDTAGQ------------ERFRAVTRSYYRGAAGALMVYDIT 98
           TR ++E  +    I +Q+ DTAG             ER    +R     A   L+  D  
Sbjct: 259 TRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVER----SRQAANTADLVLLTIDAA 314

Query: 99  RRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVE 156
                     W T  + +     +  + L+ NK+DL   + +     +       ++   
Sbjct: 315 T--------GWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLI--TSLEYPENITQIVHT- 363

Query: 157 ASAMTGENVEQAFLETAKKIYQNIKDGKLNAN 188
            +A   + ++   LETA  I + ++ GK+ A 
Sbjct: 364 -AAAQKQGIDS--LETA--ILEIVQTGKVQAA 390

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 37/155 (23%)

Query: 54  TR-IIE--VHGEKIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDI 97
           TR +I   +    I  +I DTAG              ER    T      A   L V D 
Sbjct: 278 TRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIER----TLQEIEKADIVLFVLDA 333

Query: 98  TRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFV 155
           +             + + +     N    ++ NK+D+    +   +E  K     D   V
Sbjct: 334 SS--------PLDEEDRKILERIKNKRYLVVINKVDVVEKIN---EEEIKNKLGTDRHMV 382

Query: 156 EASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           + SA+ GE +E+  LE  + IY+  ++     + +
Sbjct: 383 KISALKGEGLEK--LE--ESIYRETQEIFERGSDS 413

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 24/165 (14%)

Query: 18  YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGE--KIKLQIWDTAG- 73
            +I G   VGKS LL   T  K     P      F TR I V   E    + QI DT G 
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAK-----PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224

Query: 74  -----QER----FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTV 122
                 ER     +A+    Y G    + ++D +    +  L   +   + +     +  
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNL-IIYIFDPSEHCGFP-LEEQIHLFEEVHGEFKDLP 282

Query: 123 IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167
             ++ NK+D+  + +      +KF +E  L  ++ SA+ G  ++ 
Sbjct: 283 FLVVINKIDV--ADEENIKRLEKFVKEKGLNPIKISALKGTGIDL 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.98
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.98
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.98
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.84
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.83
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.83
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.82
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.82
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.82
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.81
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.79
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.77
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.77
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.76
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.75
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.73
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.72
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.7
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.65
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.64
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.63
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.61
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.6
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.59
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.55
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.53
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.53
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.49
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.48
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.47
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.47
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.44
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.38
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.38
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.32
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.31
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.27
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.13
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.93
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.92
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.89
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.88
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.87
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.76
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.74
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.73
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.69
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.41
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.37
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.35
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.2
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.19
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.17
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.14
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.07
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.94
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.87
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.86
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.82
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.66
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.56
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.46
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.43
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.4
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.35
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.31
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.3
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.3
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.3
2xxa_A	433	Signal recognition particle protein; protein trans	97.29
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.28
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.28
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.28
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.26
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.22
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.2
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.16
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.14
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.14
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.12
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.1
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.08
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.06
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.05
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.03
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.03
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.03
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.02
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.02
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.01
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.01
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.01
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.01
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.0
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.99
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.99
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.99
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.98
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.98
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.98
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.98
1g6h_A	257	High-affinity branched-chain amino acid transport	96.97
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.96
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.96
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.96
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.95
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.95
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.94
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.93
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.93
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.93
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.93
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.93
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.92
3co5_A	143	Putative two-component system transcriptional RES	96.91
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.91
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.9
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.9
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.89
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.89
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.89
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.89
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.89
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.88
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.87
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.86
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.85
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.85
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.84
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.84
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.82
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.82
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.82
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.81
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.81
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.81
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.81
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.79
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.79
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.79
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.79
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.78
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.77
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.77
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.77
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.77
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.75
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.74
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.74
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.73
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.72
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.71
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.71
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.7
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.69
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.68
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.68
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.68
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.66
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.66
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.66
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.65
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.65
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.64
1via_A	175	Shikimate kinase; structural genomics, transferase	96.64
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.64
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.64
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.64
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.63
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.63
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.62
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.61
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.61
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.6
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.6
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.6
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.59
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.58
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.58
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.57
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.57
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.57
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.56
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.55
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.55
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.54
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.53
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.53
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.53
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.52
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.52
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.51
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.5
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.49
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.49
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.48
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.47
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.46
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.46
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.45
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.45
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.45
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.45
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.44
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.43
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.43
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.43
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.43
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.42
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.39
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.39
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.38
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.36
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.36
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.36
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.35
2og2_A	359	Putative signal recognition particle receptor; nuc	96.33
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.3
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.29
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.28
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.27
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.26
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.25
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.22
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.22
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.21
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.2
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.2
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.2
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.2
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.19
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.19
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.19
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.19
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.18
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.17
3bos_A	242	Putative DNA replication factor; P-loop containing	96.17
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.16
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.16
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.15
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.14
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.14
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.04
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.01
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.0
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.99
3uc9_A	233	Increased recombination centers protein 6; rossman	95.96
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.96
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.94
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.93
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.93
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.93
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.91
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.87
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.87
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.86
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.85
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.82
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.82
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.82
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.8
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.79
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.76
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.75
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.75
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.72
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.72
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.71
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.71
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.7
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.66
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.63
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.63
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.62
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.61
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.61
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.61
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.6
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.56
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.55
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.54
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.53
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.52
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.48
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.47
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.47
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.47
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.44
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.44
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.44
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.42
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.35
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.34
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.33
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.33
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.29
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.23
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.22
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.2
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.2
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.19
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.16
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.16
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.13
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.13
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.1
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.1
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.09
2qgz_A	308	Helicase loader, putative primosome component; str	95.07
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.06
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.06
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.04
2fna_A	357	Conserved hypothetical protein; structural genomic	95.03
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.01
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.01

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.3e-43  Score=263.73  Aligned_cols=167  Identities=35%  Similarity=0.642  Sum_probs=146.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      .+.+||+|+|++|||||||+++|+.+.|...+.+|.+.++..+.+.+++..+.+.||||+|+++|..++..|++.++++|
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            45689999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      +|||++++++|+.+..|+..+.....+++|++||+||+|+.+.+.+..+++++++..++++|++|||++|.||+++|..|
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988877899999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy1169         173 AKKIYQN  179 (218)
Q Consensus       173 ~~~~~~~  179 (218)
                      ++.+...
T Consensus       171 ~~~i~~~  177 (216)
T 4dkx_A          171 AAALPGM  177 (216)
T ss_dssp             HHHC---
T ss_pred             HHHHHhh
Confidence            9887653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1e-37  Score=230.92  Aligned_cols=175  Identities=45%  Similarity=0.866  Sum_probs=160.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            46788999999999999999999999999888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988877767899999999999988777888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCcc
Q psy1169         171 ETAKKIYQNIKDGKL  185 (218)
Q Consensus       171 ~i~~~~~~~~~~~~~  185 (218)
                      +|.+.+.+.......
T Consensus       164 ~l~~~i~~~~~~~~~  178 (206)
T 2bcg_Y          164 TMARQIKESMSQQNL  178 (206)
T ss_dssp             HHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999887655443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=4.4e-36  Score=222.13  Aligned_cols=172  Identities=36%  Similarity=0.616  Sum_probs=150.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      ..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            35678999999999999999999999999888888888888888888888888999999999999999989999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCCCccccHHHHHHHHH-hCCCcEEEeccCCCCCH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-ENDLIFVEASAMTGENV  165 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i  165 (218)
                      +|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999887766543    478999999999997 45566678888887 67889999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcC
Q psy1169         166 EQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~  183 (218)
                      +++|++|.+.+.+.....
T Consensus       163 ~~l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          163 EQAFQTIARNALKQETEV  180 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccc
Confidence            999999999998765433

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-36  Score=225.01  Aligned_cols=179  Identities=50%  Similarity=0.865  Sum_probs=147.8

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      .+.++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+
T Consensus         7 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   86 (223)
T 3cpj_B            7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA   86 (223)
T ss_dssp             ---CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred             CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence            34567889999999999999999999999998888888888888888888888889999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  166 (223)
T 3cpj_B           87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA  166 (223)
T ss_dssp             CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999888776668999999999999877777778899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCcccc
Q psy1169         169 FLETAKKIYQNIKDGKLNA  187 (218)
Q Consensus       169 ~~~i~~~~~~~~~~~~~~~  187 (218)
                      |++|.+.+.+......+..
T Consensus       167 ~~~l~~~i~~~~~~~~~~~  185 (223)
T 3cpj_B          167 FEELINTIYQKVSKHQMDL  185 (223)
T ss_dssp             HHHHHHHHTTCC-------
T ss_pred             HHHHHHHHHHHhhhcccCc
Confidence            9999999988876665543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=7.4e-35  Score=213.67  Aligned_cols=176  Identities=45%  Similarity=0.815  Sum_probs=160.0

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      +.+..+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus         9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   88 (196)
T 3tkl_A            9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG   88 (196)
T ss_dssp             --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred             cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence            44556789999999999999999999999999988888898888888888889999999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            99999999999999999999999998887777899999999999988888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC
Q psy1169         168 AFLETAKKIYQNIKDG  183 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~~  183 (218)
                      +|++|.+.+.+.....
T Consensus       169 l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          169 SFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998865433

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=215.86  Aligned_cols=175  Identities=42%  Similarity=0.780  Sum_probs=147.7

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169           7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR   86 (218)
Q Consensus         7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (218)
                      ..++.+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++
T Consensus        21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~  100 (201)
T 2hup_A           21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR  100 (201)
T ss_dssp             -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred             CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence            34556788899999999999999999999999988888888888887888888888899999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENV  165 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i  165 (218)
                      .+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...++ +++++||+++.|+
T Consensus       101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence            999999999999999999999999988877667899999999999987777888889999999999 8999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy1169         166 EQAFLETAKKIYQNIK  181 (218)
Q Consensus       166 ~~~~~~i~~~~~~~~~  181 (218)
                      +++|++|.+.+.+...
T Consensus       181 ~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          181 EEAFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999977543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=9.3e-35  Score=211.46  Aligned_cols=180  Identities=61%  Similarity=1.045  Sum_probs=160.8

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      |...+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            44556788999999999999999999999999888888888888888888888888999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+...++..++...+++++++||+++.|+++
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE  162 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence            99999999999999999999999888877667899999999999977677777889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCcccc
Q psy1169         168 AFLETAKKIYQNIKDGKLNA  187 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~~~  187 (218)
                      +|+++.+.+.+.........
T Consensus       163 l~~~l~~~~~~~~~~~~~~~  182 (186)
T 2bme_A          163 AFVQCARKILNKIESGELDP  182 (186)
T ss_dssp             HHHHHHHHHHHHHHSCC---
T ss_pred             HHHHHHHHHHHHhhhcCCCc
Confidence            99999999998776655433

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.1e-35  Score=215.30  Aligned_cols=173  Identities=42%  Similarity=0.814  Sum_probs=157.2

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      ..++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            35678899999999999999999999999988888888888888888888988999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++|+|||++++.+|+.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  180 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  180 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766789999999999998777777788888988889999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q psy1169         170 LETAKKIYQNIKD  182 (218)
Q Consensus       170 ~~i~~~~~~~~~~  182 (218)
                      +++.+.+.+....
T Consensus       181 ~~l~~~i~~~~~~  193 (201)
T 2ew1_A          181 LDLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999876543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=7.6e-35  Score=215.23  Aligned_cols=169  Identities=33%  Similarity=0.530  Sum_probs=150.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      +....+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            445679999999999999999999999988887777776665 4556678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      +|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988877653 479999999999998777788888999998889999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy1169         170 LETAKKIYQNI  180 (218)
Q Consensus       170 ~~i~~~~~~~~  180 (218)
                      ++|++.+.++.
T Consensus       169 ~~l~~~i~~~~  179 (206)
T 2bov_A          169 FDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcc
Confidence            99999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.2e-34  Score=212.07  Aligned_cols=176  Identities=63%  Similarity=1.027  Sum_probs=155.2

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      .+..+...+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            44456888999999999999999999999999888877888888888888888889999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (191)
T 2a5j_A           94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE  173 (191)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999999988877667899999999999977777777889999998899999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC
Q psy1169         168 AFLETAKKIYQNIKDG  183 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~~  183 (218)
                      +|++|.+.+.++....
T Consensus       174 l~~~l~~~i~~~~~~~  189 (191)
T 2a5j_A          174 AFINTAKEIYRKIQQG  189 (191)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999998876543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=7e-35  Score=214.84  Aligned_cols=180  Identities=60%  Similarity=1.051  Sum_probs=149.3

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169           7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR   86 (218)
Q Consensus         7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (218)
                      ...+.++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   96 (200)
T 2o52_A           17 RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   96 (200)
T ss_dssp             -----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence            34455788999999999999999999999998888888888888888888888888899999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      .+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+...++..++...+++++++||+++.|++
T Consensus        97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~  176 (200)
T 2o52_A           97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE  176 (200)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999998887766789999999999997767777788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCccc
Q psy1169         167 QAFLETAKKIYQNIKDGKLN  186 (218)
Q Consensus       167 ~~~~~i~~~~~~~~~~~~~~  186 (218)
                      ++|++|++.+.++.......
T Consensus       177 ~l~~~l~~~i~~~~~~~~~~  196 (200)
T 2o52_A          177 EAFLKCARTILNKIDSGELD  196 (200)
T ss_dssp             HHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHhcCCCC
Confidence            99999999998877665543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.2e-35  Score=213.49  Aligned_cols=173  Identities=41%  Similarity=0.803  Sum_probs=127.9

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      ++.+++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+
T Consensus         2 ~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   81 (183)
T 2fu5_C            2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   81 (183)
T ss_dssp             -CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcC
Confidence            34567889999999999999999999998888777778888888777888888899999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  161 (183)
T 2fu5_C           82 MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA  161 (183)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999888776678999999999999877778888899999988999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy1169         169 FLETAKKIYQNIK  181 (218)
Q Consensus       169 ~~~i~~~~~~~~~  181 (218)
                      |++|.+.+.+...
T Consensus       162 ~~~l~~~i~~~~~  174 (183)
T 2fu5_C          162 FFTLARDIKAKMD  174 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987644

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2.6e-34  Score=207.57  Aligned_cols=170  Identities=88%  Similarity=1.358  Sum_probs=154.2

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      ....++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (179)
T 1z0f_A            9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   88 (179)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence            34567889999999999999999999999998888888888888888888888899999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|++++
T Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (179)
T 1z0f_A           89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA  168 (179)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999888877678999999999999777777788899999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         169 FLETAKKIYQ  178 (218)
Q Consensus       169 ~~~i~~~~~~  178 (218)
                      |+++.+.+.+
T Consensus       169 ~~~l~~~i~~  178 (179)
T 1z0f_A          169 FLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=210.23  Aligned_cols=175  Identities=45%  Similarity=0.813  Sum_probs=157.2

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169           7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR   86 (218)
Q Consensus         7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (218)
                      ...+.++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.|||++|.+.+..++..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            34456788899999999999999999999999988888888888888888888888999999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      .+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||+++.|++
T Consensus        97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A           97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE  176 (193)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999988877666789999999999998777777788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy1169         167 QAFLETAKKIYQNIK  181 (218)
Q Consensus       167 ~~~~~i~~~~~~~~~  181 (218)
                      ++|++|.+.+.++..
T Consensus       177 ~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          177 LAFETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=6.2e-34  Score=210.06  Aligned_cols=174  Identities=37%  Similarity=0.703  Sum_probs=158.6

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      ..+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+..++..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            34578899999999999999999999999988888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999998887766689999999999998877788888999999889999999999999999999


Q ss_pred             HHHHHHHHHhhhcC
Q psy1169         170 LETAKKIYQNIKDG  183 (218)
Q Consensus       170 ~~i~~~~~~~~~~~  183 (218)
                      ++|.+.+.+.....
T Consensus       163 ~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          163 ERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998876554

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.4e-35  Score=213.85  Aligned_cols=174  Identities=38%  Similarity=0.695  Sum_probs=158.3

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      .+..+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus        16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (191)
T 3dz8_A           16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG   95 (191)
T ss_dssp             ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred             cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence            34457889999999999999999999999998888877888888878888888888999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A           96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ  175 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999999999999998887767899999999999987778888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy1169         168 AFLETAKKIYQNIK  181 (218)
Q Consensus       168 ~~~~i~~~~~~~~~  181 (218)
                      +|++|++.+.+...
T Consensus       176 l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          176 AFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=7.1e-34  Score=207.54  Aligned_cols=172  Identities=37%  Similarity=0.713  Sum_probs=155.7

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      +...++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++.+
T Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   95 (189)
T 2gf9_A           16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA   95 (189)
T ss_dssp             CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred             CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence            33467789999999999999999999999998888888888888777887888899999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|++++
T Consensus        96 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  175 (189)
T 2gf9_A           96 MGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV  175 (189)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999888776668999999999999877777778889999988999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy1169         169 FLETAKKIYQNI  180 (218)
Q Consensus       169 ~~~i~~~~~~~~  180 (218)
                      |++|.+.+.++.
T Consensus       176 ~~~l~~~i~~~~  187 (189)
T 2gf9_A          176 FERLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.2e-34  Score=205.96  Aligned_cols=174  Identities=41%  Similarity=0.687  Sum_probs=153.7

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      |...+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            34466789999999999999999999999998888888888888888888889999999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +|++|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE  160 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            999999999999999999999998887655 5799999999999987777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q psy1169         168 AFLETAKKIYQNIKD  182 (218)
Q Consensus       168 ~~~~i~~~~~~~~~~  182 (218)
                      +|+++.+.+.+....
T Consensus       161 l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          161 MFNCITELVLRAKKD  175 (181)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-34  Score=208.63  Aligned_cols=172  Identities=39%  Similarity=0.772  Sum_probs=147.0

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      .+.+.+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.
T Consensus        19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   98 (192)
T 2il1_A           19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS   98 (192)
T ss_dssp             ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence            34456788999999999999999999999988887777888888888888888889999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVE  166 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~  166 (218)
                      +|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++.. .+++++++||+++.|++
T Consensus        99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A           99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence            99999999999999999999999888877767899999999999987777777888888887 48899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++|++|.+.+.++
T Consensus       179 ~l~~~l~~~i~~~  191 (192)
T 2il1_A          179 EIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.7e-33  Score=203.89  Aligned_cols=168  Identities=38%  Similarity=0.699  Sum_probs=152.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34677999999999999999999999999888888888888878888888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +|+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999988887767899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1169         171 ETAKKIYQ  178 (218)
Q Consensus       171 ~i~~~~~~  178 (218)
                      +|.+.+.+
T Consensus       168 ~l~~~~~~  175 (181)
T 2efe_B          168 EIARRLPR  175 (181)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHh
Confidence            99877644

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.3e-33  Score=203.67  Aligned_cols=170  Identities=30%  Similarity=0.473  Sum_probs=151.7

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      ++......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.
T Consensus        11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   89 (183)
T 3kkq_A           11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT   89 (183)
T ss_dssp             ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred             CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhc
Confidence            344556789999999999999999999999988888888887777 6667788899999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC-CCCCH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM-TGENV  165 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~i  165 (218)
                      +|++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...+++++++||+ ++.|+
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v  169 (183)
T 3kkq_A           90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV  169 (183)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence            99999999999999999999998887654 34679999999999998888888899999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHH
Q psy1169         166 EQAFLETAKKIYQ  178 (218)
Q Consensus       166 ~~~~~~i~~~~~~  178 (218)
                      +++|++|.+.+.+
T Consensus       170 ~~l~~~l~~~i~~  182 (183)
T 3kkq_A          170 DKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998865

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=4.3e-34  Score=204.88  Aligned_cols=167  Identities=34%  Similarity=0.675  Sum_probs=145.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999988888888888888777888888899999999999999998899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998887766567999999999999877777888899999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1169         172 TAKKIYQ  178 (218)
Q Consensus       172 i~~~~~~  178 (218)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.3e-33  Score=202.15  Aligned_cols=165  Identities=39%  Similarity=0.707  Sum_probs=150.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35679999999999999999999999998888888888888788888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776678999999999999776777778889999999999999999999999999999


Q ss_pred             HHHHH
Q psy1169         172 TAKKI  176 (218)
Q Consensus       172 i~~~~  176 (218)
                      |.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.8e-34  Score=207.61  Aligned_cols=171  Identities=37%  Similarity=0.606  Sum_probs=151.6

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      +.+.++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.
T Consensus        16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (192)
T 2fg5_A           16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG   95 (192)
T ss_dssp             -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred             cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence            44556788999999999999999999999999888888888888878888788888999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++++++...+++++++||+++.|+++
T Consensus        96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  175 (192)
T 2fg5_A           96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE  175 (192)
T ss_dssp             CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence            99999999999999999999999988877667899999999999976677778889999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         168 AFLETAKKIYQ  178 (218)
Q Consensus       168 ~~~~i~~~~~~  178 (218)
                      +|++|.+.+.+
T Consensus       176 l~~~l~~~i~~  186 (192)
T 2fg5_A          176 LFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHHh
Confidence            99999876643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.3e-33  Score=202.27  Aligned_cols=166  Identities=45%  Similarity=0.821  Sum_probs=144.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            56899999999999999999999999888888888888877788788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....+++..++...+++++++||+++.|++++|+++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999888877678999999999999 4555667888889888899999999999999999999999


Q ss_pred             HHHHHhh
Q psy1169         174 KKIYQNI  180 (218)
Q Consensus       174 ~~~~~~~  180 (218)
                      +.+.++.
T Consensus       161 ~~~~~~~  167 (170)
T 1g16_A          161 KLIQEKI  167 (170)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            9987653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.3e-33  Score=204.32  Aligned_cols=173  Identities=35%  Similarity=0.661  Sum_probs=153.7

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE-EEEEEECCe---------EEEEEEeeCcchhhhhh
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG-TRIIEVHGE---------KIKLQIWDTAGQERFRA   79 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~   79 (218)
                      ..++..+||+|+|++|+|||||+++|++..+...+.++.+.++. ...+.+++.         .+.+.+||+||++.+..
T Consensus         6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A            6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            35678899999999999999999999999888888888888876 556666655         78999999999999999


Q ss_pred             hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEec
Q psy1169          80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEAS  158 (218)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (218)
                      .+..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++|
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  165 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS  165 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999999999999999999988877654 6899999999999977677777888999988899999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhhhc
Q psy1169         159 AMTGENVEQAFLETAKKIYQNIKD  182 (218)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~~~~  182 (218)
                      |+++.|++++|++|.+.+.++...
T Consensus       166 a~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          166 AANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999876543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.3e-33  Score=201.54  Aligned_cols=170  Identities=41%  Similarity=0.785  Sum_probs=145.3

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      +.++..+||+|+|++|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            34578899999999999999999999998875 46677888888777778888899999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999888776678999999999999887777888888999888999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |+++.+.+.+.
T Consensus       165 ~~~l~~~~~~~  175 (180)
T 2g6b_A          165 FTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999988653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=8.8e-34  Score=204.81  Aligned_cols=174  Identities=36%  Similarity=0.633  Sum_probs=150.2

Q ss_pred             cccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhH
Q psy1169           3 TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR   82 (218)
Q Consensus         3 ~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   82 (218)
                      +|.......+...+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+.
T Consensus         2 ~m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~   81 (179)
T 2y8e_A            2 TMSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP   81 (179)
T ss_dssp             ----------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSH
T ss_pred             ccccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHH
Confidence            45544333345669999999999999999999999998888888888888888888898899999999999999999999


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      .+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++
T Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (179)
T 2y8e_A           82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  161 (179)
T ss_dssp             HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            99999999999999999999999999998888766678999999999999877777778888888888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKI  176 (218)
Q Consensus       163 ~~i~~~~~~i~~~~  176 (218)
                      .|++++|++|.+.+
T Consensus       162 ~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          162 YNVKQLFRRVAAAL  175 (179)
T ss_dssp             BSHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999998765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.8e-33  Score=202.52  Aligned_cols=171  Identities=33%  Similarity=0.509  Sum_probs=151.2

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      ..+....+||+|+|++|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+
T Consensus         3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   81 (181)
T 2fn4_A            3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG   81 (181)
T ss_dssp             -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence            345567899999999999999999999999888888888777765 5667788889999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      |++|+|||+++..++..+..|+..+... ...+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  161 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE  161 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            9999999999999999999998887443 346899999999999987777878889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy1169         168 AFLETAKKIYQNI  180 (218)
Q Consensus       168 ~~~~i~~~~~~~~  180 (218)
                      +|++|.+.+.+..
T Consensus       162 l~~~l~~~~~~~~  174 (181)
T 2fn4_A          162 AFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.6e-33  Score=198.98  Aligned_cols=165  Identities=40%  Similarity=0.704  Sum_probs=151.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||.+.+......+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||++++.+++.+..|+..+.....+..|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999888876678999999999999877777778889999999999999999999999999999


Q ss_pred             HHHHH
Q psy1169         172 TAKKI  176 (218)
Q Consensus       172 i~~~~  176 (218)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.9e-33  Score=207.10  Aligned_cols=173  Identities=43%  Similarity=0.803  Sum_probs=152.4

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .+.+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            34567899999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..+++..++...+++++++||+++.|++++|
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  173 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  173 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999888776668999999999999 455566778888888888999999999999999999


Q ss_pred             HHHHHHHHHhhhcC
Q psy1169         170 LETAKKIYQNIKDG  183 (218)
Q Consensus       170 ~~i~~~~~~~~~~~  183 (218)
                      ++|.+.+.+.....
T Consensus       174 ~~l~~~~~~~~~~~  187 (213)
T 3cph_A          174 FTLAKLIQEKIDSN  187 (213)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999998876543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=9.1e-34  Score=208.65  Aligned_cols=171  Identities=34%  Similarity=0.637  Sum_probs=138.8

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      .+...+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||.+.+..++..+++.
T Consensus        21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  100 (199)
T 2p5s_A           21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK  100 (199)
T ss_dssp             -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred             CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence            44456778999999999999999999999998887788888888878888889899999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC------CCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE------GSRDVRYDEAKKFAEENDLIFVEASAMT  161 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (218)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..+++..++...+++++++||++
T Consensus       101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  180 (199)
T 2p5s_A          101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD  180 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence            9999999999999999999999988887766689999999999995      3566777888889988899999999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (218)
                      +.|++++|.+|++.+.+
T Consensus       181 g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          181 GSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             CTTHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.8e-33  Score=209.67  Aligned_cols=174  Identities=36%  Similarity=0.693  Sum_probs=151.6

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe----------EEEEEEeeCcchhhh
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------KIKLQIWDTAGQERF   77 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~   77 (218)
                      ..+.+++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.|||++|++.+
T Consensus        18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~   97 (217)
T 2f7s_A           18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF   97 (217)
T ss_dssp             ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred             cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence            4456788999999999999999999999998887777777777777777766655          789999999999999


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEE
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVE  156 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  156 (218)
                      ...+..+++.+|++|+|||+++..+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++.+++...++++++
T Consensus        98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  177 (217)
T 2f7s_A           98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE  177 (217)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred             HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEE
Confidence            99999999999999999999999999999999887765443 57999999999999877777788899999999999999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169         157 ASAMTGENVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       157 ~S~~~~~~i~~~~~~i~~~~~~~~~  181 (218)
                      +||+++.|++++|++|.+.+.++..
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999987654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.9e-33  Score=202.73  Aligned_cols=168  Identities=30%  Similarity=0.432  Sum_probs=150.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      +....+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus         2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            446789999999999999999999999888888888888777 6667788899999999999999998889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            999999999999999999998876654 3579999999999998888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy1169         170 LETAKKIYQN  179 (218)
Q Consensus       170 ~~i~~~~~~~  179 (218)
                      +++++.+.+.
T Consensus       161 ~~l~~~~~~~  170 (181)
T 3t5g_A          161 RRIILEAEKM  170 (181)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=201.78  Aligned_cols=173  Identities=47%  Similarity=0.780  Sum_probs=153.3

Q ss_pred             CCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhh
Q psy1169           6 SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY   85 (218)
Q Consensus         6 ~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   85 (218)
                      ..++......+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..++
T Consensus         6 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   85 (195)
T 1x3s_A            6 SGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY   85 (195)
T ss_dssp             ---CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH
T ss_pred             CCcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHh
Confidence            34556667789999999999999999999999998888888888888888888898999999999999999999999999


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      +.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++...+++++++||+++.|
T Consensus        86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (195)
T 1x3s_A           86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDG  164 (195)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            999999999999999999999999988876542 579999999999994 455667888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1169         165 VEQAFLETAKKIYQN  179 (218)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (218)
                      ++++|++|.+.+.+.
T Consensus       165 i~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          165 VQCAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.3e-32  Score=198.55  Aligned_cols=167  Identities=36%  Similarity=0.671  Sum_probs=146.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            35678999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCCCccccHHHHHHHHH-hCCCcEEEeccCCCCCH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-ENDLIFVEASAMTGENV  165 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i  165 (218)
                      +|+|||+++..+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||+++.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988776543    678999999999997 55667788888888 57889999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1169         166 EQAFLETAKKIYQ  178 (218)
Q Consensus       166 ~~~~~~i~~~~~~  178 (218)
                      +++|+++++.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-33  Score=200.55  Aligned_cols=163  Identities=38%  Similarity=0.690  Sum_probs=148.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            35899999999999999999999999888888888888888888888899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC---ccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS---RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...   +.+..++...++...+++++++||+++.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998888776678999999999999655   56777888888888899999999999999999999


Q ss_pred             HHHHHH
Q psy1169         171 ETAKKI  176 (218)
Q Consensus       171 ~i~~~~  176 (218)
                      ++.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            988654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=3.9e-33  Score=203.61  Aligned_cols=168  Identities=40%  Similarity=0.712  Sum_probs=147.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-hhhHhhhccCC
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAA   89 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d   89 (218)
                      .....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|.+.+. .++..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            34567999999999999999999999999888888888888888888888888999999999999988 78899999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC---CCH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG---ENV  165 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~~i  165 (218)
                      ++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++   .|+
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i  175 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV  175 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence            9999999999999999999998887765 468999999999999877777888899999999999999999999   999


Q ss_pred             HHHHHHHHHHHHH
Q psy1169         166 EQAFLETAKKIYQ  178 (218)
Q Consensus       166 ~~~~~~i~~~~~~  178 (218)
                      +++|.+|.+.+.+
T Consensus       176 ~~l~~~l~~~i~~  188 (189)
T 1z06_A          176 EAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.1e-33  Score=200.85  Aligned_cols=166  Identities=34%  Similarity=0.572  Sum_probs=150.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35689999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      ++|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            99999999999999999998887665 67999999999999876777778888999888999999999999999999999


Q ss_pred             HHHHHHH
Q psy1169         172 TAKKIYQ  178 (218)
Q Consensus       172 i~~~~~~  178 (218)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.6e-33  Score=206.30  Aligned_cols=171  Identities=26%  Similarity=0.379  Sum_probs=138.8

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhhhhHhh
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAVTRSY   84 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~   84 (218)
                      ..+.....+||+|+|++|||||||+++|.+..  +...+ ++++.++....+.+++..+.+.+|||+|.+. +..+...+
T Consensus        30 ~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~  108 (211)
T 2g3y_A           30 SSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC  108 (211)
T ss_dssp             -----CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCC
T ss_pred             ccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHH
Confidence            34456678999999999999999999998643  33333 3456666667777889999999999999876 45567778


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE  163 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (218)
                      ++.+|++|+|||+++..+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++.+.++...+++++++||++|.
T Consensus       109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~  188 (211)
T 2g3y_A          109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH  188 (211)
T ss_dssp             CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            899999999999999999999999988776542 3579999999999997767777788888888888999999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy1169         164 NVEQAFLETAKKIYQN  179 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~~  179 (218)
                      |++++|+++++.+...
T Consensus       189 ~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          189 NVKELFEGIVRQVRLR  204 (211)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=204.73  Aligned_cols=169  Identities=24%  Similarity=0.309  Sum_probs=142.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-hhHhhhccCC
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGAA   89 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d   89 (218)
                      +....+||+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            456789999999999999999999975433323334455555566777888999999999999987664 7788899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999988776543 47999999999999887778888899999988999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |+++++.+.+.
T Consensus       179 f~~l~~~i~~~  189 (195)
T 3cbq_A          179 FEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=2e-32  Score=199.10  Aligned_cols=165  Identities=21%  Similarity=0.371  Sum_probs=142.6

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      .++....+||+|+|++|||||||+++|+...+...+.++ ...+ ...+.+++..+.+.||||+|++.+.     +++.+
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            345677899999999999999999999999988777776 3333 4677788999999999999998776     77889


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCC--CCccccHHHHHHHHHhCC-CcEEEeccCCCCC
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLE--GSRDVRYDEAKKFAEEND-LIFVEASAMTGEN  164 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~  164 (218)
                      |++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.  ..+.+..+++..++...+ ++++++||+++.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999999998877653 578999999999994  466778888999999886 8999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy1169         165 VEQAFLETAKKIYQNI  180 (218)
Q Consensus       165 i~~~~~~i~~~~~~~~  180 (218)
                      ++++|+++++.+.+..
T Consensus       167 v~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          167 VERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.5e-32  Score=201.27  Aligned_cols=167  Identities=36%  Similarity=0.673  Sum_probs=147.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeE----------------------------
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK----------------------------   63 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   63 (218)
                      ++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            4567999999999999999999999999888888888888877777666554                            


Q ss_pred             ---------EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          64 ---------IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        64 ---------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                               +.+.|||+||++.+...+..+++.+|++|+|||++++.+++.+..|+..+....  +.|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence                     899999999999999999999999999999999999999999999998887655  399999999999 55


Q ss_pred             CccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169         135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~  181 (218)
                      .+.+..+++.+++...+++++++||+++.|++++|++|.+.+.++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            56677789999999999999999999999999999999999987654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-32  Score=202.66  Aligned_cols=164  Identities=27%  Similarity=0.377  Sum_probs=141.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4569999999999999999999999888777777766554 344567888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.. +.+..+++..++...+++++++||+++.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999888877766543  4789999999999965 45666788888888889999999999999999999


Q ss_pred             HHHHHHHH
Q psy1169         171 ETAKKIYQ  178 (218)
Q Consensus       171 ~i~~~~~~  178 (218)
                      +|++.+.+
T Consensus       164 ~l~~~~~~  171 (199)
T 2gf0_A          164 ELLTLETR  171 (199)
T ss_dssp             HHHHHCSS
T ss_pred             HHHHHHhh
Confidence            99887643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=8e-33  Score=198.16  Aligned_cols=165  Identities=24%  Similarity=0.326  Sum_probs=133.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-hhHhhhccCCEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGAAGALM   93 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   93 (218)
                      .+||+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|.+.+.. +...+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            68999999999999999999998776666666666777777888899999999999999988776 67778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999988877653 479999999999998778888899999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy1169         173 AKKIYQN  179 (218)
Q Consensus       173 ~~~~~~~  179 (218)
                      ++.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=203.39  Aligned_cols=165  Identities=25%  Similarity=0.376  Sum_probs=142.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..+ ..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            45679999999999999999999999998888888887766 445667888999999999999988775 6789999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc-CCCCCHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA-MTGENVEQ  167 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~i~~  167 (218)
                      |+|||++++++|+.+..|+..+....   ..+.|+++|+||+|+...+.+..+++.+++...+++++++|| +++.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            99999999999999999998887653   257999999999999877778888999999999999999999 89999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         168 AFLETAKKIYQ  178 (218)
Q Consensus       168 ~~~~i~~~~~~  178 (218)
                      +|+.+++.+.+
T Consensus       176 lf~~l~~~i~~  186 (187)
T 3c5c_A          176 VFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=197.09  Aligned_cols=168  Identities=26%  Similarity=0.385  Sum_probs=135.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--hhhhhHhhhccCCE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVTRSYYRGAAG   90 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   90 (218)
                      ...+||+|+|++|+|||||+++|.+..+...+. +.+.+.....+.+++..+.+.+||++|.+.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            357999999999999999999999887665433 455566667777888899999999999887  56677888999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      +|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988777653 3479999999999998877788888888888888999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy1169         170 LETAKKIYQNIK  181 (218)
Q Consensus       170 ~~i~~~~~~~~~  181 (218)
                      ++|.+.+.++..
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999999876543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.7e-33  Score=208.14  Aligned_cols=169  Identities=29%  Similarity=0.505  Sum_probs=113.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCceeeeEEEEEEEECCe--EEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVHGE--KIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      ...+||+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+||++|++.+..++..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            67899999999999999999999988  777777778777777777777776  88999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCC-CccccHHHHHHHHHhCCCcEEEeccCC-CC
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEG-SRDVRYDEAKKFAEENDLIFVEASAMT-GE  163 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~  163 (218)
                      |++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.. .+.+..+++..++...+++++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999998887765   5899999999999987 677888899999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHhhh
Q psy1169         164 NVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~~~~  181 (218)
                      |++++|++|.+.+.+...
T Consensus       178 gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             --CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999998877643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.8e-33  Score=207.90  Aligned_cols=166  Identities=28%  Similarity=0.560  Sum_probs=142.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++.+|++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            35679999999999999999999999988877777777555 44556788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--------ccHHHHHHHHHhCCC-cEEEeccCC
Q psy1169          92 LMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--------VRYDEAKKFAEENDL-IFVEASAMT  161 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~  161 (218)
                      |+|||++++++++.+. .|+..+.... ++.|+++|+||+|+...+.        +..+++..++...+. +++++||++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            9999999999999986 7888887654 4799999999999976544        266788888888775 899999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q psy1169         162 GENVEQAFLETAKKIYQN  179 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~  179 (218)
                      +.|++++|+++++.+.+.
T Consensus       164 g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHhhh
Confidence            999999999999998765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=3.5e-32  Score=199.30  Aligned_cols=167  Identities=24%  Similarity=0.502  Sum_probs=147.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .....+||+|+|++|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            45678999999999999999999999999888888888777654 56678899999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC--ccccHHHHHHHHHhCCCc-EEEeccCCCCCHH
Q psy1169          91 ALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS--RDVRYDEAKKFAEENDLI-FVEASAMTGENVE  166 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~  166 (218)
                      +|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...  +.+..+++..++...++. ++++||+++.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 67887776554 67999999999999753  667778899999998888 9999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++|+++++.+.++
T Consensus       177 ~l~~~l~~~i~~~  189 (194)
T 3reg_A          177 EVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.1e-32  Score=199.54  Aligned_cols=169  Identities=35%  Similarity=0.600  Sum_probs=134.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            45678999999999999999999999999888888888877777777666 56789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCC-CccccHHHHHHHHH-hCCCcEEEeccCCCC
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEG-SRDVRYDEAKKFAE-ENDLIFVEASAMTGE  163 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~  163 (218)
                      ++|+|||+++..+++.+..|+..+.....    .+.|+++|+||+|+.. .+.+..+++.+++. ..+.+++++||+++.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            99999999999999999999988776543    6789999999999954 34456778888887 577899999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy1169         164 NVEQAFLETAKKIYQN  179 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~~  179 (218)
                      |++++|++|.+.+.++
T Consensus       164 gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          164 NVDTAFEEIARSALQQ  179 (182)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=3.4e-32  Score=194.32  Aligned_cols=164  Identities=33%  Similarity=0.554  Sum_probs=143.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            358999999999999999999999988777777766655 3455678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999888876653 479999999999998777777888999998889999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         173 AKKIYQ  178 (218)
Q Consensus       173 ~~~~~~  178 (218)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.2e-33  Score=204.91  Aligned_cols=169  Identities=27%  Similarity=0.427  Sum_probs=144.6

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      ++....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||++|.+.+..++..+++.+|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            3456789999999999999999999999999888888877776 555556777889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+...++..++...+++++++||+++.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999998887653 247899999999999887888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |++|.+.+.+.
T Consensus       178 ~~~l~~~i~~~  188 (201)
T 3oes_A          178 FTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998775

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.2e-32  Score=205.04  Aligned_cols=169  Identities=24%  Similarity=0.464  Sum_probs=145.1

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      ++....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++.+|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3456679999999999999999999999999888888887776 455567778899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHH-HHHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEE
Q psy1169          90 GALMVYDITRRSTYNH-LSSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFV  155 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~  155 (218)
                      ++|+|||++++++|+. +..|+..+.... .+.|+++|+||+|+...            +.+..+++..++...++ +++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999998 688988887765 68999999999999653            66888899999999998 899


Q ss_pred             EeccCCCCC-HHHHHHHHHHHHHHhh
Q psy1169         156 EASAMTGEN-VEQAFLETAKKIYQNI  180 (218)
Q Consensus       156 ~~S~~~~~~-i~~~~~~i~~~~~~~~  180 (218)
                      ++||+++.| ++++|+.+++.+.+..
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccC
Confidence            999999998 9999999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=4.3e-32  Score=196.06  Aligned_cols=163  Identities=20%  Similarity=0.315  Sum_probs=137.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|++|||||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+||++|++.     ..+++.+|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            457999999999999999999999988876 666666444 56667888899999999999876     45788899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCC--CCccccHHHHHHHHHhC-CCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLE--GSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~  166 (218)
                      +|||++++++++.+..|+..+....   ..+.|+++|+||+|+.  ..+.+..+++.+++... +++++++||+++.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999876655443   2579999999999994  45667778888888774 7899999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q psy1169         167 QAFLETAKKIYQNIKD  182 (218)
Q Consensus       167 ~~~~~i~~~~~~~~~~  182 (218)
                      ++|+++.+.+.+....
T Consensus       158 ~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=3.8e-33  Score=201.50  Aligned_cols=167  Identities=33%  Similarity=0.528  Sum_probs=145.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||++|++.+..++..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4679999999999999999999998887766667777777777777766 678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcC--CCCe-EEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTN--PNTV-IFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      |+|||++++.+++.+..|+..+.....  ...| +++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999999887766432  2344 8999999999776777778888999888999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |++|.+.+.+.
T Consensus       164 ~~~l~~~~~~~  174 (178)
T 2hxs_A          164 FQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhh
Confidence            99999888553

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=8.6e-32  Score=195.66  Aligned_cols=168  Identities=33%  Similarity=0.531  Sum_probs=148.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34679999999999999999999999988877777776665 44556788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      |+|||+++..+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  173 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            999999999999999999888876653 4799999999999987777778889999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1169         171 ETAKKIYQNI  180 (218)
Q Consensus       171 ~i~~~~~~~~  180 (218)
                      +|.+.+.++.
T Consensus       174 ~l~~~i~~~~  183 (187)
T 2a9k_A          174 DLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999987754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.3e-31  Score=195.03  Aligned_cols=167  Identities=31%  Similarity=0.522  Sum_probs=143.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..+||+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999988877777765443 556667888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      +|||+++..+++.+..|+..+.... ..+.|+++|+||+|+. .+....+.+..++...+++++++||+++.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998887654 3589999999999996 4456668888899988999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1169         172 TAKKIYQNIK  181 (218)
Q Consensus       172 i~~~~~~~~~  181 (218)
                      +.+.+.+...
T Consensus       160 l~~~~~~~~~  169 (189)
T 4dsu_A          160 LVREIRKHKE  169 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            9999977643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=5e-32  Score=193.47  Aligned_cols=161  Identities=32%  Similarity=0.525  Sum_probs=142.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988888777777665 34556777889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCCHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++... +.+++++||+++.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            99999999999999988877653 358999999999999877777778888888886 8899999999999999999999


Q ss_pred             HHHH
Q psy1169         173 AKKI  176 (218)
Q Consensus       173 ~~~~  176 (218)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T 1c1y_A          162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=6.8e-32  Score=192.74  Aligned_cols=163  Identities=28%  Similarity=0.412  Sum_probs=122.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|+|||||+++|.+...... .++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999986654422 33444444 45566788999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999988887643 35799999999999988888888899999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy1169         174 KKIYQN  179 (218)
Q Consensus       174 ~~~~~~  179 (218)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988664

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9e-32  Score=197.08  Aligned_cols=167  Identities=25%  Similarity=0.488  Sum_probs=145.2

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .+....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   91 (194)
T 2atx_A           13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   91 (194)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence            3456789999999999999999999999988877777776655 445667778899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEE
Q psy1169          90 GALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFV  155 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~  155 (218)
                      ++|+|||++++++|+.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..++...+. +++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (194)
T 2atx_A           92 VFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  170 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence            999999999999999987 7888877654 47999999999999754            45677888899988787 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHH
Q psy1169         156 EASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       156 ~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      ++||+++.|++++|++|.+.+++
T Consensus       171 ~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          171 ECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999988763

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=6.3e-32  Score=192.75  Aligned_cols=163  Identities=29%  Similarity=0.493  Sum_probs=144.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988877777766544 55667788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999999888776543 5799999999999977777777888889988899999999999999999999999


Q ss_pred             HHHHH
Q psy1169         174 KKIYQ  178 (218)
Q Consensus       174 ~~~~~  178 (218)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.4e-32  Score=197.95  Aligned_cols=166  Identities=32%  Similarity=0.489  Sum_probs=146.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|.+. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            45679999999999999999999999998888888877665 44566788889999999999887 77788899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC-CHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE-NVEQAF  169 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~  169 (218)
                      |+|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||+++. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999988877654 3589999999999998777788888999998889999999999999 999999


Q ss_pred             HHHHHHHHHh
Q psy1169         170 LETAKKIYQN  179 (218)
Q Consensus       170 ~~i~~~~~~~  179 (218)
                      ++|.+.+.+.
T Consensus       183 ~~l~~~i~~~  192 (196)
T 2atv_A          183 YELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998765

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-32  Score=201.71  Aligned_cols=170  Identities=26%  Similarity=0.483  Sum_probs=142.6

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc
Q psy1169           7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR   86 (218)
Q Consensus         7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (218)
                      .|+......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..+++
T Consensus        20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   98 (205)
T 1gwn_A           20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP   98 (205)
T ss_dssp             -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             CCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence            3555567889999999999999999999999998887778877666 445667788899999999999999999999999


Q ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-C
Q psy1169          87 GAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-L  152 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~  152 (218)
                      .+|++|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+...            +.+..+++..++...+ +
T Consensus        99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  177 (205)
T 1gwn_A           99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA  177 (205)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence            99999999999999999998 68888777654 57999999999999642            4567788888988866 6


Q ss_pred             cEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy1169         153 IFVEASAM-TGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       153 ~~~~~S~~-~~~~i~~~~~~i~~~~~~  178 (218)
                      +++++||+ ++.|++++|+.+++.++.
T Consensus       178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          178 TYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            89999999 689999999999998864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=6.2e-32  Score=201.10  Aligned_cols=169  Identities=25%  Similarity=0.487  Sum_probs=124.2

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      .+.....+||+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.|||++|++.+..++..+++.+
T Consensus        28 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~  106 (214)
T 2j1l_A           28 APPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDA  106 (214)
T ss_dssp             ----CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CE
T ss_pred             CCCCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccC
Confidence            33345679999999999999999999999888777777765554 45566788899999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCCC-cE
Q psy1169          89 AGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEENDL-IF  154 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~  154 (218)
                      |++|+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+...+            .+..+++..++...++ ++
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  185 (214)
T 2j1l_A          107 SVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY  185 (214)
T ss_dssp             EEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence            9999999999999999986 6888776654 579999999999997653            5666778889988887 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         155 VEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       155 ~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      +++||+++.|++++|++|.+.+.+.
T Consensus       186 ~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          186 LECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=197.89  Aligned_cols=169  Identities=26%  Similarity=0.441  Sum_probs=137.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .....+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            457789999999999999999999998887777777776555 4556678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEE
Q psy1169          91 ALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVE  156 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~  156 (218)
                      +|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..+++..++...+. ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999997 6888777655 48999999999999652            45667788888888776 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169         157 ASAMTGENVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       157 ~S~~~~~~i~~~~~~i~~~~~~~~~  181 (218)
                      +||+++.|++++|+++++.+.+...
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999887643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=6.3e-32  Score=196.41  Aligned_cols=165  Identities=27%  Similarity=0.508  Sum_probs=142.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999988877778877665 44566788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEe
Q psy1169          92 LMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEA  157 (218)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  157 (218)
                      |+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...            +.+..+++..++...+ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 67888776654 57999999999999642            5577788888988866 789999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHHH
Q psy1169         158 SAM-TGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       158 S~~-~~~~i~~~~~~i~~~~~~  178 (218)
                      ||+ ++.|++++|+.+.+.+++
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=2.3e-32  Score=200.44  Aligned_cols=175  Identities=21%  Similarity=0.245  Sum_probs=140.4

Q ss_pred             ccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------CCCceeeeEEEEEE-EECCeEEEEEEeeC
Q psy1169           4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-----------CPHTIGVEFGTRII-EVHGEKIKLQIWDT   71 (218)
Q Consensus         4 ~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~   71 (218)
                      |.......++..+||+|+|++|||||||++.+.+ .+...           ..++.+.++....+ .+++..+.+.+|||
T Consensus         3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt   81 (198)
T 3t1o_A            3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV   81 (198)
T ss_dssp             -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred             ccccchhccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence            4444556678899999999999999999965554 44433           23354455444434 45677889999999


Q ss_pred             cchhhhhhhhHhhhccCCEEEEEEECC------ChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH
Q psy1169          72 AGQERFRAVTRSYYRGAAGALMVYDIT------RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK  145 (218)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  145 (218)
                      +|++.+..++..+++.+|++|+|||++      +.++|+.+..|+..+.. ...+.|+++|+||+|+.+.  +..+++++
T Consensus        82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~  158 (198)
T 3t1o_A           82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRA  158 (198)
T ss_dssp             CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHH
Confidence            999999999999999999999999999      56777788888877632 3368999999999999654  66788999


Q ss_pred             HHHhCCC-cEEEeccCCCCCHHHHHHHHHHHHHHhhhc
Q psy1169         146 FAEENDL-IFVEASAMTGENVEQAFLETAKKIYQNIKD  182 (218)
Q Consensus       146 ~~~~~~~-~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~  182 (218)
                      ++...++ +++++||+++.|++++|++|.+.+.++...
T Consensus       159 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          159 VVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             HHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            9999998 999999999999999999999999887543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=6.8e-32  Score=201.27  Aligned_cols=171  Identities=26%  Similarity=0.469  Sum_probs=145.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .....+||+|+|.+|||||||+++|++..+...+.++.+.......+... +..+.+.+||++|++.+..++..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            34678999999999999999999999888777666777766656555443 34489999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999998888776779999999999998777788888888988899999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy1169         170 LETAKKIYQNIK  181 (218)
Q Consensus       170 ~~i~~~~~~~~~  181 (218)
                      ++|.+.+.+...
T Consensus       167 ~~l~~~~~~~~~  178 (218)
T 4djt_A          167 LHLARIFTGRPD  178 (218)
T ss_dssp             HHHHHHHHCCTT
T ss_pred             HHHHHHHhcccc
Confidence            999999977643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=7.3e-31  Score=193.42  Aligned_cols=165  Identities=31%  Similarity=0.504  Sum_probs=143.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            356799999999999999999999999888777777776664 3456788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEe
Q psy1169          92 LMVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEA  157 (218)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  157 (218)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...            +.+..+++..++...+. +++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            999999999999998 67877776654 57999999999999765            44667788888888887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHH
Q psy1169         158 SAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      ||+++.|++++|++|.+.+++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.98  E-value=2.3e-34  Score=211.89  Aligned_cols=171  Identities=46%  Similarity=0.824  Sum_probs=143.1

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      +....+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus        26 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~  105 (199)
T 3l0i_B           26 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG  105 (199)
T ss_dssp             C-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred             cCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence            34456788999999999999999999999988877777788888888888889999999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      +|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus       106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~  185 (199)
T 3l0i_B          106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  185 (199)
T ss_dssp             CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999999999999988877667899999999999987777776778889999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         168 AFLETAKKIYQ  178 (218)
Q Consensus       168 ~~~~i~~~~~~  178 (218)
                      +|++|.+.+.+
T Consensus       186 l~~~l~~~l~~  196 (199)
T 3l0i_B          186 SFMTMAAEIKK  196 (199)
T ss_dssp             HHHHHTTTTTT
T ss_pred             HHHHHHHHHHH
Confidence            99999876644

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.98  E-value=1.7e-30  Score=189.60  Aligned_cols=165  Identities=31%  Similarity=0.513  Sum_probs=134.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      -..+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            3569999999999999999999999888777777665554 455667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      +|||+++..+++.+..|+..+..... .+.|+++|+||+|+.. +....+++++++...+++++++||+++.|++++|++
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  176 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT  176 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999888776543 4799999999999975 556678888999888999999999999999999999


Q ss_pred             HHHHHHHh
Q psy1169         172 TAKKIYQN  179 (218)
Q Consensus       172 i~~~~~~~  179 (218)
                      |.+.+.+.
T Consensus       177 l~~~~~~~  184 (190)
T 3con_A          177 LVREIRQY  184 (190)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.98  E-value=2.4e-30  Score=190.35  Aligned_cols=171  Identities=51%  Similarity=0.869  Sum_probs=150.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            56899999999999999999999999888888888888887888888999999999999999998888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      +|+|+.+..+++.+..|+..+......+.|+++++||.|+.+.+.+...+++.++...++.++++|++++.+++++|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999998889887766555678999999999998777777788999999999999999999999999999999


Q ss_pred             HHHHHHhhhcC
Q psy1169         173 AKKIYQNIKDG  183 (218)
Q Consensus       173 ~~~~~~~~~~~  183 (218)
                      .+.+.+.....
T Consensus       163 ~~~~~~~~~~~  173 (199)
T 2f9l_A          163 LTEIYRIVSQK  173 (199)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHhhc
Confidence            99998765443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.98  E-value=1.8e-30  Score=184.86  Aligned_cols=162  Identities=31%  Similarity=0.560  Sum_probs=141.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            47999999999999999999999888777777765544 45566788889999999999999888999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||+++..+++.+..|+..+..... .+.|+++|+||+|+.. +....+++.+++...+++++++|++++.|++++|+++.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888776543 4799999999999976 45666788889888899999999999999999999999


Q ss_pred             HHHHH
Q psy1169         174 KKIYQ  178 (218)
Q Consensus       174 ~~~~~  178 (218)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=4.7e-31  Score=191.68  Aligned_cols=164  Identities=26%  Similarity=0.531  Sum_probs=142.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            3579999999999999999999999888877777766554 445567888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEec
Q psy1169          93 MVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEAS  158 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  158 (218)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..+++..++...+. +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 6888777654 47999999999998654            45666788888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q psy1169         159 AMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~  178 (218)
                      |+++.|++++|+++.+.+.+
T Consensus       161 a~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCccCHHHHHHHHHHHHhc
Confidence            99999999999999988854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.4e-31  Score=189.90  Aligned_cols=162  Identities=28%  Similarity=0.395  Sum_probs=140.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999888777777766554 3445567888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |||++++.+++.+..|+..+.....  .+.|+++|+||+|+...+.+...+...++...+++++++||+++.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999888887766542  47899999999999777777777888888888899999999999999999999


Q ss_pred             HHHHH
Q psy1169         172 TAKKI  176 (218)
Q Consensus       172 i~~~~  176 (218)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98755

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=1.9e-30  Score=189.89  Aligned_cols=166  Identities=25%  Similarity=0.376  Sum_probs=135.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-hhhhhHhhhccCC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAVTRSYYRGAA   89 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   89 (218)
                      ...+||+|+|++|||||||+++|.+..  +...+ ++.+.++....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            356999999999999999999998632  33333 3455566667777889999999999999776 4556777889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ++|+|||+++..+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988776543 357999999999999776777777888888888899999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |+++.+.+...
T Consensus       163 f~~l~~~~~~~  173 (192)
T 2cjw_A          163 FEGIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.5e-30  Score=192.56  Aligned_cols=165  Identities=29%  Similarity=0.511  Sum_probs=137.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            456899999999999999999999998887777776666543 3567888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEec
Q psy1169          93 MVYDITRRSTYNHL-SSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEAS  158 (218)
Q Consensus        93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  158 (218)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...            +.+..+++..++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67887776644 57999999999999654            34666778888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHh
Q psy1169         159 AMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      |+++.|++++|++|.+.+++.
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=5e-32  Score=196.24  Aligned_cols=164  Identities=28%  Similarity=0.554  Sum_probs=125.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            456799999999999999999999998887777676654442 2234556678889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcc----------ccHHHHHHHHHhCCC-cEEEecc
Q psy1169          92 LMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRD----------VRYDEAKKFAEENDL-IFVEASA  159 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~  159 (218)
                      |+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+.          +..+++..++...+. +++++||
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            9999999999999997 6888777664 4799999999999976554          366778888888776 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy1169         160 MTGENVEQAFLETAKKIY  177 (218)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~  177 (218)
                      +++.|++++|+++.+.++
T Consensus       163 ~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998774

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=9.3e-32  Score=201.01  Aligned_cols=172  Identities=30%  Similarity=0.534  Sum_probs=148.5

Q ss_pred             cCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh
Q psy1169           5 SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY   84 (218)
Q Consensus         5 ~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   84 (218)
                      ...........+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.|||++|++.+..++..+
T Consensus         5 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   84 (221)
T 3gj0_A            5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY   84 (221)
T ss_dssp             -CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH
T ss_pred             ccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH
Confidence            33445566788999999999999999999988777666667777888878888888899999999999999999999999


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      ++.+|++|+|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+....  .+...++...+++++++||+++.|
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g  161 (221)
T 3gj0_A           85 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN  161 (221)
T ss_dssp             HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred             HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCC
Confidence            999999999999999999999999999888765 57999999999999755432  355567777789999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1169         165 VEQAFLETAKKIYQN  179 (218)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (218)
                      ++++|++|.+.+...
T Consensus       162 i~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          162 FEKPFLWLARKLIGD  176 (221)
T ss_dssp             TTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=7.9e-31  Score=192.61  Aligned_cols=170  Identities=14%  Similarity=0.251  Sum_probs=129.3

Q ss_pred             CCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh
Q psy1169           6 SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY   84 (218)
Q Consensus         6 ~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   84 (218)
                      +...++.....||+|+|.+|||||||+++|++..+.. .+.++.+....  .+  +...+.+.||||+|++.+..++..+
T Consensus         8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~   83 (199)
T 4bas_A            8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETY   83 (199)
T ss_dssp             --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGG
T ss_pred             cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHH
Confidence            3455667888999999999999999999999998887 67777764432  23  3355789999999999999999999


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC--------CCCeEEEEeeCCCCCCCcccc---HHHHHH-HHHhCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN--------PNTVIFLIGNKMDLEGSRDVR---YDEAKK-FAEENDL  152 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~piivv~nK~Dl~~~~~~~---~~~~~~-~~~~~~~  152 (218)
                      ++.+|++|+|||+++..+|+.+..|+..+.....        .+.|+++|+||+|+.......   ...... ++...++
T Consensus        84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (199)
T 4bas_A           84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF  163 (199)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred             HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence            9999999999999999999999998887765421        278999999999997653211   111111 1244778


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         153 IFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       153 ~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      +++++||+++.|++++|++|.+.+.+.
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence            899999999999999999999998775

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=9.3e-31  Score=193.33  Aligned_cols=163  Identities=26%  Similarity=0.537  Sum_probs=137.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|.+|+|||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35679999999999999999999999988877777765443 55566788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcc------------ccHHHHHHHHHhCCC-cEEEe
Q psy1169          92 LMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRD------------VRYDEAKKFAEENDL-IFVEA  157 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~~~  157 (218)
                      |+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+.            +..+++..++...+. +++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999997 7888777665 6799999999999976543            667788888888776 49999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q psy1169         158 SAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~~  176 (218)
                      ||+++.|++++|+++.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1.2e-29  Score=185.56  Aligned_cols=166  Identities=52%  Similarity=0.881  Sum_probs=149.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .++..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            45678999999999999999999999999888888898988888888899999999999999999888888889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +++|+|+.+..+++.+..|+..+......+.|+++++||.|+.+.+.+..+++++++...++.++++|++++.+++++|+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999988888777655556789999999999977666777889999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         171 ETAKKI  176 (218)
Q Consensus       171 ~i~~~~  176 (218)
                      .+.+.+
T Consensus       185 ~l~~~i  190 (191)
T 1oix_A          185 TILTEI  190 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=5.5e-30  Score=186.77  Aligned_cols=160  Identities=19%  Similarity=0.321  Sum_probs=129.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+.++..  +.  ...+.+.+||++|++.+..++..+++.+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            4567999999999999999999999998887777777766543  22  2457889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENV  165 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i  165 (218)
                      |+|||+++.++++.+..|+..+.... ..+.|+++|+||+|+.....  .++.....     ...+++++++||+++.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC--HHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            99999999999999999888776532 25799999999999965422  22222211     123557999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         166 EQAFLETAKKIY  177 (218)
Q Consensus       166 ~~~~~~i~~~~~  177 (218)
                      +++|++|.+.+.
T Consensus       173 ~~l~~~l~~~~~  184 (188)
T 1zd9_A          173 DITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987664

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.5e-29  Score=181.26  Aligned_cols=159  Identities=20%  Similarity=0.324  Sum_probs=126.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..+||+|+|++|+|||||+++|.+..+.. +.++.+..  ...+.++  .+.+.+||+||++.+...+..+++.+|++|
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            456999999999999999999999887753 44555543  3344444  568899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHH-----HHhCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKF-----AEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+......  .+....     +...+++++++||+++.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--HHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999988887765532 257999999999999765322  222221     22346679999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         167 QAFLETAKKIYQ  178 (218)
Q Consensus       167 ~~~~~i~~~~~~  178 (218)
                      ++|+++.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=5.1e-30  Score=182.61  Aligned_cols=156  Identities=19%  Similarity=0.359  Sum_probs=121.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|+|||||+++|.+..+.. +.++.+..  ...+..  ..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877654 44555533  333333  4478899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      |++++++++.+..|+..+... ...+.|+++|+||+|+.....  ..+.....     ...+++++++||+++.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999998888876553 235799999999999965422  22222211     1235579999999999999999


Q ss_pred             HHHHHHHHH
Q psy1169         170 LETAKKIYQ  178 (218)
Q Consensus       170 ~~i~~~~~~  178 (218)
                      +++.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.6e-29  Score=182.67  Aligned_cols=163  Identities=18%  Similarity=0.270  Sum_probs=128.1

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      ......+||+|+|.+|+|||||+++|.+.. +...+.++.+.  ....+.+++  +.+.+||++|++.+...+..+++.+
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence            345677999999999999999999999877 45556666553  344444443  6889999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccC
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTN---PNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAM  160 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~  160 (218)
                      |++|+|||+++..+++.+..|+..+.....   .+.|+++|+||+|+...  ...+++.++..     ..+++++++||+
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence            999999999999999999999887766543   47999999999999653  33455555553     235679999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy1169         161 TGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~  178 (218)
                      ++.|++++|++|.+.+.+
T Consensus       170 ~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTBTHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=7.3e-29  Score=180.33  Aligned_cols=160  Identities=22%  Similarity=0.360  Sum_probs=129.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..+||+|+|++|+|||||+++|.+.. ...+.++.+..  ...+.++  .+.+.+||+||++.+...+..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999887 55666666644  3344444  468899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.....  .++..+...     ..+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999998888776542 35799999999999976533  233333222     345679999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++|+++.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=2.9e-29  Score=184.52  Aligned_cols=156  Identities=17%  Similarity=0.245  Sum_probs=120.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|||||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+|||||++.+..++..+++.+|++|
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            34579999999999999999999887754 344555444  34455555  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----------------CCCcE
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----------------NDLIF  154 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  154 (218)
                      +|+|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+  .+..+++.+++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999988776542 35799999999999965  4556677776652                 34579


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q psy1169         155 VEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       155 ~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=6.3e-30  Score=185.87  Aligned_cols=164  Identities=20%  Similarity=0.384  Sum_probs=122.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCceeeeEEEEEEEE---CCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEV---HGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .+||+|+|++|||||||+++|.+.  .+...+.++.+.++....+.+   ++..+.+.+||++|++.+..+...+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999884  455556677777766555443   235678999999999999999999999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc---HHHHHHHHHhCCCc----EEEeccCC
Q psy1169          90 GALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR---YDEAKKFAEENDLI----FVEASAMT  161 (218)
Q Consensus        90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~  161 (218)
                      ++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+...+.+.   .+....++...+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 58999999998876544 579999999999997654432   23345566666776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHHh
Q psy1169         162 GE-NVEQAFLETAKKIYQN  179 (218)
Q Consensus       162 ~~-~i~~~~~~i~~~~~~~  179 (218)
                      +. +++++++.+.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            97 8999998888877553

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=8.6e-29  Score=180.81  Aligned_cols=156  Identities=17%  Similarity=0.240  Sum_probs=125.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|||||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+||+||++.+..++..+++.+|++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            44579999999999999999999988765 344555543  34555555  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh------------CCCcEEEecc
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE------------NDLIFVEASA  159 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~S~  159 (218)
                      +|||++++++|+.+..|+..+.... ..+.|+++|+||+|+..  ....+++.+++..            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999988776542 35799999999999965  3455666655442            3467999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy1169         160 MTGENVEQAFLETAKK  175 (218)
Q Consensus       160 ~~~~~i~~~~~~i~~~  175 (218)
                      +++.|++++|+++.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=2e-29  Score=182.65  Aligned_cols=161  Identities=23%  Similarity=0.303  Sum_probs=122.8

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      ...+....+||+|+|.+|+|||||+++|.+..+ ..+.++.+...  ..+.+++  +.+.+||++|++.+..++..+++.
T Consensus        14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~   88 (181)
T 2h17_A           14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTN   88 (181)
T ss_dssp             -------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred             ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence            344566789999999999999999999998877 33444544433  3344443  788999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCC
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMT  161 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~  161 (218)
                      +|++|+|||+++..+++.+..|+..+.... ..+.|+++|+||+|+...  ...+++.+..     ...+++++++||++
T Consensus        89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  166 (181)
T 2h17_A           89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT  166 (181)
T ss_dssp             CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            999999999999999999999888776542 357999999999999654  2233333333     22455799999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKK  175 (218)
Q Consensus       162 ~~~i~~~~~~i~~~  175 (218)
                      +.|++++|++|.+.
T Consensus       167 g~gi~~l~~~l~~~  180 (181)
T 2h17_A          167 GEGLCQGLEWMMSR  180 (181)
T ss_dssp             TBTHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHhh
Confidence            99999999998753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=2.2e-29  Score=184.26  Aligned_cols=159  Identities=18%  Similarity=0.318  Sum_probs=118.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ....+||+|+|++|||||||+++|..+.+.. +.++.+  +....+..  ..+.+.+||+||.+.+..++..+++.+|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3567999999999999999999998877642 233333  22333433  347889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENV  165 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i  165 (218)
                      |+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.....  .+++....     ...+++++++||+++.|+
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            99999999999999999888765432 25799999999999965422  22222211     123457999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         166 EQAFLETAKKIY  177 (218)
Q Consensus       166 ~~~~~~i~~~~~  177 (218)
                      +++|++|.+.+.
T Consensus       179 ~~l~~~l~~~i~  190 (192)
T 2b6h_A          179 YDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.9e-28  Score=178.36  Aligned_cols=159  Identities=23%  Similarity=0.333  Sum_probs=123.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|++|+|||||+++|.++.+. .+.++.+..  ...+.+++  +.+.+||++|++.+..++..+++.+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999987765 444454433  33344443  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+...  ...+++.+...     ..+++++++||+++.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988776542 257999999999999653  22344444332     345689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         167 QAFLETAKKIYQ  178 (218)
Q Consensus       167 ~~~~~i~~~~~~  178 (218)
                      ++|++|++.+..
T Consensus       167 ~l~~~l~~~~~~  178 (187)
T 1zj6_A          167 QGLEWMMSRLKI  178 (187)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987744

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=4e-28  Score=191.57  Aligned_cols=164  Identities=26%  Similarity=0.531  Sum_probs=143.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...++|+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||++|.+.+...+..+++.+|++|
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            4568999999999999999999999988877777776555 455667888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCCC-cEEEec
Q psy1169          93 MVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEENDL-IFVEAS  158 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  158 (218)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..+++..++...++ +++++|
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            999999999999987 6877777654 48999999999998653            45677888999998887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q psy1169         159 AMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~  178 (218)
                      |+++.|++++|+.+.+.++.
T Consensus       311 a~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999988764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=1.5e-29  Score=185.70  Aligned_cols=164  Identities=21%  Similarity=0.305  Sum_probs=121.4

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEE--EEEE-CCeEEEEEEeeCcchhhhhhhh---
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEV-HGEKIKLQIWDTAGQERFRAVT---   81 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~D~~G~~~~~~~~---   81 (218)
                      ...+....+||+|+|++|||||||++++.+.. ...  ++.+.++...  ...+ ++..+.+.+||++|++.+....   
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            44567788999999999999999999877643 222  2333333222  2223 2566889999999999987766   


Q ss_pred             HhhhccCCEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC-------CccccHHHHHHHHH----
Q psy1169          82 RSYYRGAAGALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG-------SRDVRYDEAKKFAE----  148 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-------~~~~~~~~~~~~~~----  148 (218)
                      ..+++.+|++|+|||+++.  +++..+..|+..+... ..+.|+++|+||+|+..       .+.+...+...++.    
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE  168 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence            8999999999999999997  6667777777665433 36899999999999864       23455556777777    


Q ss_pred             hCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         149 ENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       149 ~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ..+++++++||++ .|++++|..+++.+
T Consensus       169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            6788899999999 99999999998765

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=8.1e-29  Score=179.56  Aligned_cols=159  Identities=22%  Similarity=0.336  Sum_probs=122.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|||||||+++|.+..+. .+.++.+..  ...+.++  .+.+.+||++|++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999876542 233344432  3344444  468899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~  166 (218)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+......  ++..+..     ...+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999998888776543 2357999999999999765432  2332221     1235679999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         167 QAFLETAKKIYQ  178 (218)
Q Consensus       167 ~~~~~i~~~~~~  178 (218)
                      ++|+++.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=2.7e-29  Score=183.12  Aligned_cols=160  Identities=18%  Similarity=0.306  Sum_probs=125.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..+||+|+|++|+|||||+++|....+.. +.++.+..  ...+.++  .+.+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            567999999999999999999998776643 34444433  3334443  468899999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHH-----HHhCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKF-----AEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+......  ++....     +...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE--AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH--HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999988887765532 257999999999999655321  222221     12345679999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++|+++.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=5.4e-31  Score=194.52  Aligned_cols=162  Identities=27%  Similarity=0.542  Sum_probs=135.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            5679999999999999999999998888776666655444 344456677788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCCC-cEEEec
Q psy1169          93 MVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEENDL-IFVEAS  158 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  158 (218)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+            .+..+++..++...+. +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999986 6777666543 379999999999997543            4455667777777777 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy1169         159 AMTGENVEQAFLETAKKI  176 (218)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~  176 (218)
                      |+++.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=5e-29  Score=180.64  Aligned_cols=160  Identities=23%  Similarity=0.334  Sum_probs=123.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..+||+|+|++|||||||+++|.++.+ ..+.++.+..  ...+.+++  +.+.+||+||.+.+...+..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5679999999999999999999987766 3444555433  33344443  78899999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----NDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+....  ..+++......     .+++++++||+++.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999988776543 3679999999999996542  23344333322     34579999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.6e-29  Score=189.76  Aligned_cols=167  Identities=23%  Similarity=0.373  Sum_probs=123.9

Q ss_pred             CCCCcceeeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCce-eeeEEEEE--------------EEEC
Q psy1169           8 GQYSYSYIFKYIIIGDM---------GVGKSCLLHQFTE---QKFMPDCPHTI-GVEFGTRI--------------IEVH   60 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~---------g~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~   60 (218)
                      ........+||+|+|.+         |||||||+++|.+   ..+...+.++. +.++....              ..++
T Consensus        12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~   91 (255)
T 3c5h_A           12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED   91 (255)
T ss_dssp             TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred             CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence            34456778999999999         9999999999998   55655555554 33322111              1245


Q ss_pred             CeEEEEEEee-----------------------CcchhhhhhhhHhhhc---------------------cCCEEEEEEE
Q psy1169          61 GEKIKLQIWD-----------------------TAGQERFRAVTRSYYR---------------------GAAGALMVYD   96 (218)
Q Consensus        61 ~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d   96 (218)
                      +..+.+.|||                       ++|++.+..++..+++                     ++|++|+|||
T Consensus        92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D  171 (255)
T 3c5h_A           92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID  171 (255)
T ss_dssp             ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred             CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence            6778899999                       5566666666666666                     7999999999


Q ss_pred             CCCh--hhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCHHHHHHHH
Q psy1169          97 ITRR--STYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        97 ~~~~--~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      ++++  .+|+.+..|+..+... ...+.|+++|+||+|+...+.+  +++.+++.. .+++++++||+++.|++++|++|
T Consensus       172 ~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence            9998  9999999999887765 3357999999999999655444  567777776 58899999999999999999999


Q ss_pred             HHHH
Q psy1169         173 AKKI  176 (218)
Q Consensus       173 ~~~~  176 (218)
                      .+.+
T Consensus       250 ~~~l  253 (255)
T 3c5h_A          250 VQLI  253 (255)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8876

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=9.2e-27  Score=172.96  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=114.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe-EEEEEEeeCcchhhhhh-hhHhhhccCCE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRA-VTRSYYRGAAG   90 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~   90 (218)
                      ...+||+|+|++|+|||||+++|++..+...+.++ ..++..  +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            56799999999999999999999998877666543 333332  445543 68899999999999887 78889999999


Q ss_pred             EEEEEECCChh-hHHHHHHHHHHH-hh--hcCCCCeEEEEeeCCCCCCCccccH--HHHHHHHH----------------
Q psy1169          91 ALMVYDITRRS-TYNHLSSWLTDT-KN--LTNPNTVIFLIGNKMDLEGSRDVRY--DEAKKFAE----------------  148 (218)
Q Consensus        91 ~i~v~d~~~~~-s~~~~~~~~~~~-~~--~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~----------------  148 (218)
                      +|+|||+++.. ++.....|+..+ ..  ....+.|+++|+||+|+...+....  +.......                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999853 455555544433 22  1235799999999999976543211  11111111                


Q ss_pred             -----------------hC--CCcEEEeccCCC------CCHHHHHHHHHHH
Q psy1169         149 -----------------EN--DLIFVEASAMTG------ENVEQAFLETAKK  175 (218)
Q Consensus       149 -----------------~~--~~~~~~~S~~~~------~~i~~~~~~i~~~  175 (218)
                                       ..  +++|+++||+++      .|++++|++|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             11  567999999999      9999999999865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.4e-26  Score=173.75  Aligned_cols=166  Identities=19%  Similarity=0.185  Sum_probs=117.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch------hh----hhhhhH
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ------ER----FRAVTR   82 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~----~~~~~~   82 (218)
                      ...++|+|+|++|||||||+++|++..+.....+..+.+.....+...  .+.+.||||||.      +.    +.. ..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            567999999999999999999999877643222222223323333333  367889999998      33    222 34


Q ss_pred             hhhccCCEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH---HHHHHHHhCC--CcEE
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD---EAKKFAEEND--LIFV  155 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~  155 (218)
                      .++..+|++|+|||++++.+++.  ...|+..+.... .+.|+++|+||+|+...+.+..+   ....++...+  ++++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            45788899999999999887642  234555444322 37999999999999876666543   4556666666  7899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHHhhhc
Q psy1169         156 EASAMTGENVEQAFLETAKKIYQNIKD  182 (218)
Q Consensus       156 ~~S~~~~~~i~~~~~~i~~~~~~~~~~  182 (218)
                      ++||+++.|++++|++|.+.+.+....
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998776543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=2.9e-27  Score=168.84  Aligned_cols=153  Identities=20%  Similarity=0.196  Sum_probs=113.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------hhhHhhhc--
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR--   86 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--   86 (218)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999998766544444444454455555554  578899999987653      34456664  


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      .+|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+...+.+.. +...++...+++++++||+++.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999998643   3456655544   4689999999999864443332 3566777778899999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         167 QAFLETAKKI  176 (218)
Q Consensus       167 ~~~~~i~~~~  176 (218)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=4.7e-27  Score=171.92  Aligned_cols=162  Identities=15%  Similarity=0.193  Sum_probs=113.4

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc----------hhhh
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERF   77 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~   77 (218)
                      .+.+....++|+|+|++|+|||||+++|++..+.....++.+.+........++   .+.+|||||          .+.+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~   92 (195)
T 1svi_A           16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAW   92 (195)
T ss_dssp             GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHH
T ss_pred             hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHH
Confidence            344556789999999999999999999998876555555554444344444433   588999999          7778


Q ss_pred             hhhhHhhhccC---CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--HHHHH-HHHhCC
Q psy1169          78 RAVTRSYYRGA---AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--DEAKK-FAEEND  151 (218)
Q Consensus        78 ~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~  151 (218)
                      ..+...+++.+   |++++|+|+++..++.... ++..+..   .+.|+++|+||+|+...+++..  +++.+ +....+
T Consensus        93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A           93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence            88888888877   9999999999987776542 2222222   5689999999999976654432  22333 333356


Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         152 LIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       152 ~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      .+++++||+++.|++++|++|.+.+
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHh
Confidence            7899999999999999999998765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=4e-27  Score=184.01  Aligned_cols=161  Identities=22%  Similarity=0.338  Sum_probs=127.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-----hhhhHhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-----RAVTRSYY   85 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~   85 (218)
                      ..+||+++|++|||||||+++|++....   ..+.+|.+..+.  .+.+.+ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999876322   234455555544  333433 678999999999988     67888899


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCC--Ccc----ccHHHHHHHHHhCC---CcE
Q psy1169          86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMDLEG--SRD----VRYDEAKKFAEEND---LIF  154 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~  154 (218)
                      +.+|++|+|||+++.++++.+..|...+....  .++.|+++|+||+|+..  .+.    +..+++.+++...+   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999987765544332  35799999999999976  443    55577888888876   789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         155 VEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       155 ~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      +++||++ .++.++|..+++.+..
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            9999999 8899999888876543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=2.3e-27  Score=186.93  Aligned_cols=159  Identities=19%  Similarity=0.350  Sum_probs=118.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|.+|+|||||+++|.+..+.... ++.+..+  ..+..  ..+.+.||||+|++.+..++..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            35679999999999999999999887764332 3333332  22323  4478899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHH-----hCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-----ENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~  166 (218)
                      +|||+++..+|+.+..|+..+.... ..++|+++|+||+|+......  +++.....     ..+++++++||+++.|++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH--HHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            9999999999999988777665432 358999999999999765422  22222221     235579999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         167 QAFLETAKKIYQ  178 (218)
Q Consensus       167 ~~~~~i~~~~~~  178 (218)
                      ++|++|++.+.+
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=9.1e-28  Score=186.38  Aligned_cols=158  Identities=16%  Similarity=0.205  Sum_probs=119.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh---hhHhhhccCCE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA---VTRSYYRGAAG   90 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   90 (218)
                      ||+++|+.|||||||++++.+.....   ...+|.+.++..    ++ ..+.++||||+|+++|..   ....|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   245666666543    22 347899999999999864   46889999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC-------ccccHHHHHHHHHh----CCCcEEEe
Q psy1169          91 ALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS-------RDVRYDEAKKFAEE----NDLIFVEA  157 (218)
Q Consensus        91 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~  157 (218)
                      +|+|||+++.  ++++.+..|+..+... .+++|+++++||+|+...       |.+..++++++++.    .++.|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999998  3333333444444333 368999999999999764       34555667777775    67889999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169         158 SAMTGENVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       158 S~~~~~~i~~~~~~i~~~~~~~~~  181 (218)
                      ||++ .++.++|..+++.++.+.+
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHH
Confidence            9998 5899999999988766533

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=4.1e-26  Score=164.42  Aligned_cols=158  Identities=20%  Similarity=0.180  Sum_probs=118.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++.  .+.+|||||++.+..++..++..+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            56789999999999999999999998887766666555555555556654  5679999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-------C--CcEEEeccCCCC
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-------D--LIFVEASAMTGE  163 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~S~~~~~  163 (218)
                      +|+|+++....+.+. ++..+   ...+.|+++|+||+|+....   .++........       +  ++++++||+++.
T Consensus        84 ~v~d~~~~~~~~~~~-~l~~~---~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           84 LVVAADDGVMPQTVE-AINHA---KAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             EEEETTCCCCHHHHH-HHHHH---GGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             EEEECCCCCcHHHHH-HHHHH---HhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            999999843332222 12222   22578999999999996532   12333322221       1  579999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q psy1169         164 NVEQAFLETAKKIYQN  179 (218)
Q Consensus       164 ~i~~~~~~i~~~~~~~  179 (218)
                      |++++|++|.+.+...
T Consensus       157 gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          157 GLDHLLEMILLVSEME  172 (178)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhhhhh
Confidence            9999999999887654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=2.1e-26  Score=167.67  Aligned_cols=156  Identities=21%  Similarity=0.210  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc-----------hhhhhhhhHhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG-----------QERFRAVTRSY   84 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   84 (218)
                      +||+|+|++|+|||||+++|.+..+...+.++.+...  ..+.+.    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6999999999999999999999887766655444332  223233    678999999           67777788888


Q ss_pred             hcc-CCEEEEEEECCChhhHHHH-HHHHHH---------HhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCc
Q psy1169          85 YRG-AAGALMVYDITRRSTYNHL-SSWLTD---------TKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLI  153 (218)
Q Consensus        85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (218)
                      ++. ++++++++++.+..++..+ ..|...         .......+.|+++|+||+|+...+   .+....++...+++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            887 8877777777777777766 455432         122223579999999999997654   45677777776653


Q ss_pred             -------EEEeccCCCCCHHHHHHHHHHHHHHhh
Q psy1169         154 -------FVEASAMTGENVEQAFLETAKKIYQNI  180 (218)
Q Consensus       154 -------~~~~S~~~~~~i~~~~~~i~~~~~~~~  180 (218)
                             ++++||+++.|++++|+++.+.+.+..
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                   799999999999999999999887643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=3.5e-26  Score=166.33  Aligned_cols=157  Identities=19%  Similarity=0.187  Sum_probs=120.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------hhhHhhhc-
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR-   86 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   86 (218)
                      ..++|+|+|++|||||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||.+.+.      .+...++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999998765444445555555555565554  678899999987653      44566664 


Q ss_pred             -cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169          87 -GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV  165 (218)
Q Consensus        87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (218)
                       .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+...+.+. .+...++...+++++++||+++.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             4999999999886   4455667665554   578999999999986544333 3566777777889999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy1169         166 EQAFLETAKKIYQN  179 (218)
Q Consensus       166 ~~~~~~i~~~~~~~  179 (218)
                      +++|+++.+.+.+.
T Consensus       157 ~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          157 EELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999888654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=2.7e-25  Score=162.32  Aligned_cols=162  Identities=18%  Similarity=0.268  Sum_probs=116.4

Q ss_pred             CCCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc----------hhh
Q psy1169           7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QER   76 (218)
Q Consensus         7 ~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~   76 (218)
                      ..+.+....+||+|+|++|+|||||+++|++..+. ...++.+.+........+.   .+.+||+||          .+.
T Consensus        15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~   90 (195)
T 3pqc_A           15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERML   90 (195)
T ss_dssp             TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHH
T ss_pred             hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHH
Confidence            34556677899999999999999999999988733 3333333333333333332   467999999          667


Q ss_pred             hhhhhHhhhccC---CEEEEEEECCChhhH--HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc--cccHHHHHHHHHh
Q psy1169          77 FRAVTRSYYRGA---AGALMVYDITRRSTY--NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR--DVRYDEAKKFAEE  149 (218)
Q Consensus        77 ~~~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~  149 (218)
                      +..+...+++.+   |++++|+|+++..+.  ..+..|+..      .+.|+++|+||+|+....  ....++...++..
T Consensus        91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~  164 (195)
T 3pqc_A           91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK  164 (195)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence            777788887776   899999999886443  333334332      268999999999996543  2333455666665


Q ss_pred             -CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         150 -NDLIFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       150 -~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                       ..++++++||+++.|++++|+++.+.+.+
T Consensus       165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence             45789999999999999999999987743

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=9e-25  Score=170.68  Aligned_cols=165  Identities=18%  Similarity=0.140  Sum_probs=124.6

Q ss_pred             CCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhh----------h
Q psy1169           9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------F   77 (218)
Q Consensus         9 ~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~   77 (218)
                      .++++..-.|+++|.+|||||||+|+|++..+..... +..+..........+ ...++.||||||...          +
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence            4556788999999999999999999999987654222 222222222223222 156788999999743          3


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEE
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFV  155 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~  155 (218)
                      ......+++.+|++|+|+|+++..+++....|+..+..   .+.|+++|+||+|+...+.........+....+  .+++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence            35677888999999999999999888887777776665   468999999999997455555566777777764  7799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHH
Q psy1169         156 EASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       156 ~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      ++||+++.|++++|+.+.+.+.
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEeCCCCCCHHHHHHHHHHhCc
Confidence            9999999999999999987763

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=3e-25  Score=157.26  Aligned_cols=150  Identities=14%  Similarity=0.133  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------hhhhhHhhhcc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------FRAVTRSYYRG   87 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   87 (218)
                      .||+|+|++|+|||||+++|.+..+. ....+..+.+.....+..++.  .+.+||+||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987743 222233334444455555554  678999999876       44566778899


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVE  166 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~  166 (218)
                      +|++|+|+|+++..+...  .++..+...  .+.|+++|+||+|+....    +++.+++ ..++ +++++||+++.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998644322  222222211  468999999999996542    2333444 4556 79999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         167 QAFLETAKKI  176 (218)
Q Consensus       167 ~~~~~i~~~~  176 (218)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=5.6e-26  Score=163.29  Aligned_cols=153  Identities=22%  Similarity=0.201  Sum_probs=111.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh----h--h--hHhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----A--V--TRSY   84 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~--~--~~~~   84 (218)
                      ..+||+|+|++|+|||||+++|.+.... ....+..+.++....+.+++.  .+.+|||||...+.    .  +  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4579999999999999999999987642 222233344555566666654  47899999975421    1  1  2246


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      ++.+|++|+|+|+++..+++. ..|+..+......++|+++|+||+|+.....       .++...+.+++++||+++.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            789999999999999888763 4677666665555799999999999853321       11223466899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKI  176 (218)
Q Consensus       165 i~~~~~~i~~~~  176 (218)
                      ++++|++|.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=3.1e-25  Score=169.09  Aligned_cols=156  Identities=17%  Similarity=0.161  Sum_probs=118.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh------hhHhhh-
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYY-   85 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-   85 (218)
                      ...++|+++|++|+|||||+++|.+..+.....+..+.+.....+...  ...+.+||+||...+..      +...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            467999999999999999999999876544434444444444444443  36889999999876543      335555 


Q ss_pred             -ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          86 -RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        86 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                       ..+|++|+|+|+++.++..   .|...+..   .+.|+++++||+|+...+.+. .+...++...+++++++||+++.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999876532   35544443   479999999999986544443 246777888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKIY  177 (218)
Q Consensus       165 i~~~~~~i~~~~~  177 (218)
                      ++++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=5.5e-26  Score=190.00  Aligned_cols=165  Identities=20%  Similarity=0.281  Sum_probs=124.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEE------EEE--CCeEEEEEEeeCcchhhhhhhhH
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI------IEV--HGEKIKLQIWDTAGQERFRAVTR   82 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~   82 (218)
                      .....+||+++|.+|||||||+++|.+..+...+.++.+.++....      +.+  ++..+.+.+||++|++.+..+..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3467799999999999999999999998888777788777765442      111  23457899999999999999999


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      .+++.+|++|+|+|+++.   +.+..|+..+.... .+.|+++|+||+|+...+.+..++.++++...+.+++++||+++
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999865   45567877777655 47999999999999887777778888888888899999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q psy1169         163 ENVEQAFLETAKKIYQN  179 (218)
Q Consensus       163 ~~i~~~~~~i~~~~~~~  179 (218)
                      .|++++++.+.+.+.+.
T Consensus       193 ~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             --CTTHHHHHHHHHTCT
T ss_pred             cCHHHHHHHHHHHHhcc
Confidence            99999999999887653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=1.5e-25  Score=170.57  Aligned_cols=151  Identities=15%  Similarity=0.076  Sum_probs=115.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----------hhHhhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VTRSYY   85 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   85 (218)
                      .+|+++|.+|+|||||+++|.+........+..+.+.....+.+++.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999987655445556666666666666654  788999999876542          556677


Q ss_pred             --ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC
Q psy1169          86 --RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE  163 (218)
Q Consensus        86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  163 (218)
                        ..+|++|+|+|+++.+.+..+..+   +.   ..+.|+++|+||+|+...+... .....+....+++++++||+++.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999997665444333   22   2479999999999986544332 22445667778999999999999


Q ss_pred             CHHHHHHHHHHH
Q psy1169         164 NVEQAFLETAKK  175 (218)
Q Consensus       164 ~i~~~~~~i~~~  175 (218)
                      |++++|+++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=8.3e-25  Score=163.31  Aligned_cols=166  Identities=15%  Similarity=0.121  Sum_probs=112.1

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CeEEEEEEeeCcc----------hhhhh
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAG----------QERFR   78 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G----------~~~~~   78 (218)
                      .+....++|+|+|.+|+|||||+++|++...........+.+.......+. .....+.||||||          .+.+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            345678999999999999999999999876322222222222222233333 3446788999999          45556


Q ss_pred             hhhHhhhcc---CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHHHHHHHHh----
Q psy1169          79 AVTRSYYRG---AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDEAKKFAEE----  149 (218)
Q Consensus        79 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~----  149 (218)
                      .+...++..   +|++|+|+|+++..+... ..|+..+..   .+.|+++|+||+|+.......  .+...+....    
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            667777766   788999999998644322 234444443   468999999999997544321  1222222222    


Q ss_pred             ---CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         150 ---NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       150 ---~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                         ...+++++||+++.|++++|++|.+.+.+.
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence               567899999999999999999999887543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=2.7e-25  Score=170.45  Aligned_cols=153  Identities=20%  Similarity=0.173  Sum_probs=113.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------hhhHhhhc-
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR-   86 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   86 (218)
                      +.++|+++|++|||||||+++|.+........+..+.+.  ....+.. ...+.+|||||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            458999999999999999999998764433333333332  2333444 5678999999987664      45566665 


Q ss_pred             -cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169          87 -GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV  165 (218)
Q Consensus        87 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (218)
                       .+|++|+|+|+++.+.+   ..|...+..   .+.|+++++||+|+...+.+. .+...++...+++++++||+++.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986554   345544443   479999999999986444333 3456777778899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         166 EQAFLETAKKI  176 (218)
Q Consensus       166 ~~~~~~i~~~~  176 (218)
                      +++|+++.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=6.8e-25  Score=163.29  Aligned_cols=144  Identities=21%  Similarity=0.278  Sum_probs=106.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc-
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG-   87 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   87 (218)
                      ....++|+|+|++|+|||||+++|.+..+..   .+.++.+..+         ..+.+.+||+||++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            4567999999999999999999999887654   2333332222         34578899999999998888888877 


Q ss_pred             ---CCEEEEEEECC-ChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeCCCCCCCcccc------HHHHHHHHHhCCCc
Q psy1169          88 ---AAGALMVYDIT-RRSTYNHLSSWLTDTKNL----TNPNTVIFLIGNKMDLEGSRDVR------YDEAKKFAEENDLI  153 (218)
Q Consensus        88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~  153 (218)
                         +|++|+|+|++ +..++..+..|+..+...    ...+.|+++|+||+|+...+.+.      .++...++...+..
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888998888888776654    33689999999999998765543      34466666666778


Q ss_pred             EEEeccCCCCC
Q psy1169         154 FVEASAMTGEN  164 (218)
Q Consensus       154 ~~~~S~~~~~~  164 (218)
                      ++++|++++.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=3.9e-24  Score=164.36  Aligned_cols=157  Identities=20%  Similarity=0.193  Sum_probs=118.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh------hhHhhh--c
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYY--R   86 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~   86 (218)
                      .++|+++|++|+|||||+++|.+..+.....+..+.+.....+.+.+.  .+.+||+||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            589999999999999999999987765455556666666666666554  488999999876554      455666  6


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      .+|++|+|+|+++.+.   ...|+..+...  ...|+++++||+|+...+.... +...+.+..+++++++||+++.|++
T Consensus        81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHH
Confidence            8999999999998643   22343333332  1289999999999864433332 2666777788999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++|+.+.+.+.+.
T Consensus       155 ~l~~~i~~~~~~~  167 (271)
T 3k53_A          155 ELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=8.9e-25  Score=168.06  Aligned_cols=153  Identities=16%  Similarity=0.140  Sum_probs=113.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh----------hhhHhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----------AVTRSY   84 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~   84 (218)
                      .++|+++|.+|+|||||+|+|++..+.....+..+.+.....+...+  ..+.+|||||...+.          .....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999998775444445555565555665544  357789999987654          223334


Q ss_pred             h--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          85 Y--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      +  +.+|++|+|+|+++.+....+..++   ..   .+.|+++|+||+|+...+... .....+....+++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l---~~---~~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQL---LE---LGIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHH---HH---HTCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHH---Hh---cCCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  7999999999999876554443333   32   268999999999986443332 2345667777899999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKI  176 (218)
Q Consensus       163 ~~i~~~~~~i~~~~  176 (218)
                      .|++++++++.+.+
T Consensus       154 ~gi~el~~~i~~~~  167 (274)
T 3i8s_A          154 RGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999998887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=1.6e-23  Score=171.03  Aligned_cols=161  Identities=15%  Similarity=0.144  Sum_probs=116.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcch----------hhhhhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFRAVT   81 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   81 (218)
                      +..+||+++|.+|||||||+++|++.... ....+.++.+.....+.+++.  .+.||||||+          +.+..+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45699999999999999999999987653 232333344444445555654  4789999998          4455443


Q ss_pred             H-hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH-----HHHhCCCcEE
Q psy1169          82 R-SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK-----FAEENDLIFV  155 (218)
Q Consensus        82 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~  155 (218)
                      . .+++.+|++|+|+|++++.+++.. .|+..+..   .+.|+++|+||+|+.+.+....++..+     +....+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 478899999999999999888776 46655543   579999999999997765544333322     2223467899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         156 EASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       156 ~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      ++||++|.|++++|+.+.+.+.+.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=6.4e-23  Score=168.32  Aligned_cols=162  Identities=14%  Similarity=0.145  Sum_probs=118.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc----------hhhhhhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERFRAV   80 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   80 (218)
                      ....++|+++|.+|+|||||+++|++... .....+.++.+.....+..++.  .+.||||||          ++.+..+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            35679999999999999999999997642 2223333344433445555554  688999999          5666665


Q ss_pred             hH-hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-----CCcE
Q psy1169          81 TR-SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-----DLIF  154 (218)
Q Consensus        81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~  154 (218)
                      .. .+++.+|++|+|+|+++..+.+. ..|+..+..   .+.|+++|+||+|+...+....+++.+.+...     .+++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            54 47899999999999998655433 344444443   56999999999999877766666666666543     5789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         155 VEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       155 ~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      +++||++|.|++++|+.+.+.+.+.
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            9999999999999999999887654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.90  E-value=5.8e-23  Score=168.45  Aligned_cols=157  Identities=16%  Similarity=0.139  Sum_probs=99.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhh--------Hhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RSY   84 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   84 (218)
                      ..++|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+++  +.+.+|||||...+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            4589999999999999999999887532 23333444444445555555  568899999987765433        346


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      ++.+|++|+|+|++++.+++.+..+...+....  +.|+++|+||+|+.......   ...+......+++++||+++.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCC
Confidence            789999999999999988764433333333222  69999999999997665432   2334433236799999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKIY  177 (218)
Q Consensus       165 i~~~~~~i~~~~~  177 (218)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=2.3e-22  Score=160.15  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=119.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh---------hhhHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVTRS   83 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~   83 (218)
                      ...++|+++|++|||||||+++|.+........+..+.......+...  ...+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999998776432222222223323333333  3568899999974321         12224


Q ss_pred             hhccCCEEEEEEECCChh--hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC
Q psy1169          84 YYRGAAGALMVYDITRRS--TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT  161 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  161 (218)
                      +...+|++|+|+|+++..  +++....|+..+..... +.|+++|+||+|+.....+  ++..+++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence            456799999999999877  67777788887776543 7999999999999655432  456666777888999999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q psy1169         162 GENVEQAFLETAKKIYQN  179 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~  179 (218)
                      |.|++++++++.+.+...
T Consensus       320 g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=8.7e-23  Score=158.72  Aligned_cols=157  Identities=18%  Similarity=0.176  Sum_probs=107.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRS   83 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   83 (218)
                      -...+|+|+|.+|+|||||+|+|++..+.... .+..+.+.....+.  ....++.||||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            34568999999999999999999988765322 22222222122222  2346889999999764        4556777


Q ss_pred             hhccCCEEEEEEECCChhhHHHHHHHH-HHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          84 YYRGAAGALMVYDITRRSTYNHLSSWL-TDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      +++.+|++|+|+|+++..+...  .|+ ..+.... .+.|+++|+||+|+...+....+.+..+  ....+++++||+++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g  157 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDE  157 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCH
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCC
Confidence            8999999999999998755442  343 3444332 4799999999999965433011222222  12346899999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKI  176 (218)
Q Consensus       163 ~~i~~~~~~i~~~~  176 (218)
                      .|++++++.+.+.+
T Consensus       158 ~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          158 RQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999998887654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=1.3e-23  Score=169.67  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=113.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh-------hH
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TR   82 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~   82 (218)
                      +....++|+|+|..|+|||||+++|++..+. ....+..+.+.....+.+.+.. .+.+|||||++.+..+       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            4567899999999999999999999887753 2233334444445555555432 7889999998765443       45


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCC
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      .++..+|++|+|+|+...+.   ...|+..+..   .+.|+++|+||+|+...+..  +....+....+++++++||+++
T Consensus       109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~---~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKE---MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCHH---HHHHHHHHHH---TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHhcCCEEEEEEeCCChHH---HHHHHHHHHh---cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence            57889999999999943333   3455555554   36899999999999766544  5566677778899999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKIYQ  178 (218)
Q Consensus       163 ~~i~~~~~~i~~~~~~  178 (218)
                      .|++++|++|.+.+.+
T Consensus       181 ~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          181 KGFDDIGKTISEILPG  196 (423)
T ss_dssp             TSTTTHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999988744

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=1.2e-22  Score=160.15  Aligned_cols=158  Identities=18%  Similarity=0.207  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----hhhhhHhhhc---cC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSYYR---GA   88 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~   88 (218)
                      .+|+|+|.++||||||+++|..........+..+.......+.+++ ...+.|||+||...    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            4689999999999999999987653322222222222233444443 24688999999653    2234444544   59


Q ss_pred             CEEEEEEECCC---hhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEEEeccCC
Q psy1169          89 AGALMVYDITR---RSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFVEASAMT  161 (218)
Q Consensus        89 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~  161 (218)
                      +++|+|+|+++   ..+++.+..|+..+..+..  ...|+++|+||+|+...+    +...++.....  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7889899888888877642  479999999999986432    34555666555  6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (218)
                      +.|+++++.+|.+.+.+
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999988744

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=4.2e-21  Score=160.73  Aligned_cols=160  Identities=22%  Similarity=0.261  Sum_probs=115.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-------------CCCceeeeEEEEEEEE---CCeEEEEEEeeCcc
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD-------------CPHTIGVEFGTRIIEV---HGEKIKLQIWDTAG   73 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G   73 (218)
                      .++..+|+|+|+.++|||||+++|+..  .+...             .....+.......+.+   ++..+.+.||||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            467889999999999999999999852  11110             0011111111111222   45568999999999


Q ss_pred             hhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-
Q psy1169          74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-  152 (218)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-  152 (218)
                      +.+|......++..+|++|+|+|+++..+++....|.....    .++|+++++||+|+...+  ......++....++ 
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence            99999888899999999999999999988888877765443    478999999999997543  22334455555565 


Q ss_pred             --cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         153 --IFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       153 --~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                        .++++||++|.|++++|+++++.+.
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhcc
Confidence              3899999999999999999887663

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.87  E-value=2.5e-21  Score=162.38  Aligned_cols=159  Identities=21%  Similarity=0.262  Sum_probs=111.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----C------CCceeeeEEE--EEEEE---CCeEEEEEEeeCcch
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD-----C------PHTIGVEFGT--RIIEV---HGEKIKLQIWDTAGQ   74 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~-----~------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~   74 (218)
                      ++..+|+|+|+.++|||||+++|+...  +...     .      ....+.+...  ..+.+   ++..+.+.||||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            357899999999999999999998632  1110     0      0011222221  22222   455789999999999


Q ss_pred             hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC--
Q psy1169          75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL--  152 (218)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--  152 (218)
                      ..|......++..+|++|+|+|+++..+++....|.....    .++|+++++||+|+...+  ......++....++  
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence            9999999999999999999999999888888877765443    468999999999997643  22334455555555  


Q ss_pred             -cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         153 -IFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       153 -~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                       .++++||++|.|++++|+++.+.+.
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             ceEEEeecccCCCchhHHHHHhhcCC
Confidence             4899999999999999999887663

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=1e-20  Score=153.13  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=104.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--ceeeeEEEEEEEE-------------C--C----eEEEE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPH--TIGVEFGTRIIEV-------------H--G----EKIKL   66 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   66 (218)
                      ..+..++|+++|..++|||||+++|.+..   +..+..+  |....+....+..             +  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            34567999999999999999999998532   3333333  4333333333211             1  1    13789


Q ss_pred             EEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh----hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccH
Q psy1169          67 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRY  140 (218)
Q Consensus        67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~  140 (218)
                      .|||+||++.|.......+..+|++|+|+|+++.    .+++.+.    .+...  ...|+++++||+|+.....  ...
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHH
Confidence            9999999999888777778889999999999964    3333332    22221  1247999999999976543  234


Q ss_pred             HHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         141 DEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       141 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      +++.+++..   .+++++++||+++.|+++++++|.+.+
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            566677664   467899999999999999999888755

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=4.9e-21  Score=154.83  Aligned_cols=160  Identities=15%  Similarity=0.160  Sum_probs=115.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE-------------------EE---CCeEEEEEE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII-------------------EV---HGEKIKLQI   68 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~i   68 (218)
                      .....++|+++|.+++|||||+++|++.......    +........                   ..   ......+.|
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF   79 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc----CccccceeeccccccccceecccccccccccccccccceEEE
Confidence            4566799999999999999999999875433211    100000000                   00   112368899


Q ss_pred             eeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHH
Q psy1169          69 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKF  146 (218)
Q Consensus        69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~  146 (218)
                      |||||++.|......++..+|++|+|+|+++..++.....|+..+....  ..|+++++||+|+......  ..++..++
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876666767766555433  2589999999999754322  12233334


Q ss_pred             HHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         147 AEE---NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       147 ~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ...   .+++++++||+++.|++++++.|.+.+
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            333   266899999999999999999888765

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=1e-21  Score=161.18  Aligned_cols=154  Identities=23%  Similarity=0.219  Sum_probs=114.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh-hhh--------hhhHhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-RFR--------AVTRSY   84 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~~~   84 (218)
                      .++|+|+|.+|||||||+|+|++.... ....+.++.+.....+.+++  ..+.+|||||.. .+.        .....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987532 23334444555555666655  457899999987 543        224567


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      ++.+|++|+|+|++++.+++... +++.+     .+.|+++|+||+|+...  ...+++..+.. .+.+++++||+++.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            89999999999999988876643 33322     36899999999999653  33344544432 456899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1169         165 VEQAFLETAKKIYQN  179 (218)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (218)
                      +++++++|.+.+...
T Consensus       392 i~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          392 LEKLEESIYRETQEI  406 (482)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999987653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=147.18  Aligned_cols=165  Identities=13%  Similarity=0.130  Sum_probs=104.6

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeEEEEEEEECCeEEEEEEeeCcch-----------hh
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEKIKLQIWDTAGQ-----------ER   76 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~   76 (218)
                      .+....++|+|+|++|+|||||+++|++..+.....+  +.+.......+.+.+  ..+.||||||.           ..
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence            3456779999999999999999999999887655444  333344444455554  46789999993           34


Q ss_pred             hhhhhHhhhccCCEEEEEEECCChhh--HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc------HHHHHHHHH
Q psy1169          77 FRAVTRSYYRGAAGALMVYDITRRST--YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR------YDEAKKFAE  148 (218)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~------~~~~~~~~~  148 (218)
                      +......+++.+|++|+|+|++....  ...+..+...+...  ...|+++|+||+|+...+.+.      .+..+.+..
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            44455566678899999999876433  22222222222111  236899999999986554332      235667777


Q ss_pred             hCCCcEEEeccCCC-----CCHHHHHHHHHHHHHH
Q psy1169         149 ENDLIFVEASAMTG-----ENVEQAFLETAKKIYQ  178 (218)
Q Consensus       149 ~~~~~~~~~S~~~~-----~~i~~~~~~i~~~~~~  178 (218)
                      ..+..++.++...+     .++.++|..+.+.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            77777787776643     5788888877776654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.86  E-value=9.9e-21  Score=155.91  Aligned_cols=159  Identities=17%  Similarity=0.136  Sum_probs=109.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY   85 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   85 (218)
                      -..++|+++|..++|||||+++|.+..       +..+..+..+.+.....+.+++  ..+.|||+||++.|......++
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            356999999999999999999998765       2223222233332223333443  5788999999999988888899


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHhC----CCcEEEecc
Q psy1169          86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEEN----DLIFVEASA  159 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~~S~  159 (218)
                      ..+|++|+|+|+++....+.... +..+..   .++|+++++||+|+.....  ...+++.+++...    +.+++++||
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~-l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA  170 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEH-MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  170 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhCCEEEEEEecCCCccHHHHHH-HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence            99999999999998432222222 222222   3588899999999975321  1223455555554    578999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy1169         160 MTGENVEQAFLETAKKIY  177 (218)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~  177 (218)
                      ++|.|+++++++|.+.+.
T Consensus       171 ~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          171 KTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhhc
Confidence            999999999999988774

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=5.7e-21  Score=145.85  Aligned_cols=165  Identities=12%  Similarity=0.098  Sum_probs=104.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCc-eeeeEEEEEEEECCeEEEEEEeeCcchhhhh----------
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHT-IGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----------   78 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------   78 (218)
                      +....++|+|+|.+|||||||+++|++... .....++ .+.......+...+  ..+.||||||...+.          
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            345679999999999999999999998773 3333333 33333333444444  468899999976532          


Q ss_pred             -hhhHhhhccCCEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEee-CCCCCCCccccH-------HHHHHHHH
Q psy1169          79 -AVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGN-KMDLEGSRDVRY-------DEAKKFAE  148 (218)
Q Consensus        79 -~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piivv~n-K~Dl~~~~~~~~-------~~~~~~~~  148 (218)
                       .....+++.+|++|+|+|++..... ..+..|+....... ...|+++++| |+|+.... +..       .....++.
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence             2233467899999999999862221 22223333322111 1356666665 99997432 211       22344555


Q ss_pred             hCCCc---E--EEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         149 ENDLI---F--VEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       149 ~~~~~---~--~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      ..+..   +  +++||+++.|++++|+.|.+.+.+.
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            54432   2  7899999999999999999988663

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.86  E-value=3e-21  Score=152.63  Aligned_cols=117  Identities=19%  Similarity=0.264  Sum_probs=98.5

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCC
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMD  131 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D  131 (218)
                      .+.+.+||++|++.++.+|..++++++++|||+|+++          ..+++....|+..+.... -.++|+++++||.|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5789999999999999999999999999999999999          566888888888776532 25799999999999


Q ss_pred             CCCCc---------------cccHHHHHHHHH-----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         132 LEGSR---------------DVRYDEAKKFAE-----------ENDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       132 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      +...+               .+..+++..++.           ..++.+++|||+++.|++++|+++.+.+.+.
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            84322               256678888876           3567799999999999999999999988764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=9.4e-21  Score=154.50  Aligned_cols=159  Identities=19%  Similarity=0.179  Sum_probs=105.3

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCceeeeEEEEEEE
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF-------------------------------MPDCPHTIGVEFGTRIIE   58 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   58 (218)
                      .+....++|+++|.+++|||||+++|+...-                               ..+..+..+.+.....+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            3456779999999999999999999964311                               111112334443333333


Q ss_pred             ECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh---HHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q psy1169          59 VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG  134 (218)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~  134 (218)
                      .  ....+.||||||+++|......++..+|++|+|+|+++...   |+....+...+......++| +++++||+|+..
T Consensus        92 ~--~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           92 T--EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT  169 (439)
T ss_pred             c--CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence            3  34588999999999999988889999999999999998643   11111111112222224566 899999999853


Q ss_pred             Cc--c----ccHHHHHHHHHhC------CCcEEEeccCCCCCHHHHHH
Q psy1169         135 SR--D----VRYDEAKKFAEEN------DLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus       135 ~~--~----~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~~~~~  170 (218)
                      ..  +    ...++...++...      +++++++||++|.|++++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            21  1    1112344444443      45799999999999999765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=1.7e-20  Score=149.16  Aligned_cols=160  Identities=19%  Similarity=0.136  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcch---------hhhhhhhHhhhcc
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ---------ERFRAVTRSYYRG   87 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~   87 (218)
                      .|+|+|++|+|||||+++|.+..+.....+..+.+.....+.+++  ..+.+|||+|.         +.+.... ..+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence            499999999999999999998765433333334445566666776  45789999996         2233333 35788


Q ss_pred             CCEEEEEEECCChh--hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc-cHHHHHHHHHhC---CCcEEEeccCC
Q psy1169          88 AAGALMVYDITRRS--TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV-RYDEAKKFAEEN---DLIFVEASAMT  161 (218)
Q Consensus        88 ~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~S~~~  161 (218)
                      +|++++|+|++++.  ..+.+..|...+......+.|+++|+||+|+...... ....+..++...   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  5666656655555544457899999999998654311 112232333333   34689999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q psy1169         162 GENVEQAFLETAKKIYQN  179 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~  179 (218)
                      +.|++++++.|.+.+...
T Consensus       338 g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhccc
Confidence            999999999998877653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=4.5e-21  Score=149.62  Aligned_cols=118  Identities=15%  Similarity=0.193  Sum_probs=96.7

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~  130 (218)
                      ..+.+.+||++|++.++.+|..|+++++++|||+|++          +..++.....|+..+.... -.++|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            3478999999999999999999999999999999765          5667777777777765432 2579999999999


Q ss_pred             CCCCCc----------------cccHHHHHHHHH----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         131 DLEGSR----------------DVRYDEAKKFAE----------ENDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       131 Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      |+...+                ....+++.+++.          ..++.+++|||+++.|++.+|..+.+.+++.
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            985433                456778887743          3566789999999999999999999999874

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=1.3e-20  Score=152.68  Aligned_cols=160  Identities=21%  Similarity=0.255  Sum_probs=111.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--ceeeeEEEEEEEE-------------C--C----eEEEE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPH--TIGVEFGTRIIEV-------------H--G----EKIKL   66 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   66 (218)
                      ..+..++|+++|..++|||||+++|++..   +..+..+  |....+....+..             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            45678999999999999999999998542   2223223  3333333322211             0  1    13689


Q ss_pred             EEeeCcchhhhhhhhHhhhccCCEEEEEEECCCh----hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccH
Q psy1169          67 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRY  140 (218)
Q Consensus        67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~  140 (218)
                      .|||+||++.|.......+..+|++|+|+|+++.    .+.+.+.    .+....  ..|+++++||+|+.....  ...
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence            9999999999888777778889999999999964    3333332    222221  257999999999975432  223


Q ss_pred             HHHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         141 DEAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       141 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      +++.+++..   .+++++++||+++.|+++++++|.+.+
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            455566554   467899999999999999999888655

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=9.9e-21  Score=154.65  Aligned_cols=151  Identities=22%  Similarity=0.235  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh---------hhhhhHhhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVTRSYY   85 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   85 (218)
                      .+|+|+|.+|||||||+|+|++.... ....+..+.+.....+.+.+.  .+.+|||+|.+.         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999977643 222333344444555556654  568999999653         345567789


Q ss_pred             ccCCEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH-HHHHHhCCC-cEEEeccCC
Q psy1169          86 RGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA-KKFAEENDL-IFVEASAMT  161 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~~  161 (218)
                      +.+|++|+|+|+.+..+..+  +..|+.   .   .+.|+++|+||+|+...  . ..++ .++. ..++ .++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999988655433  333332   2   36899999999997422  1 1222 3343 3455 689999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (218)
                      |.|+.++++++.+.+.+
T Consensus       150 g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          150 NINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999988754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=1.9e-20  Score=152.96  Aligned_cols=161  Identities=22%  Similarity=0.146  Sum_probs=108.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh-----------
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-----------   80 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------   80 (218)
                      +..++|+|+|++|||||||+++|++.... ....+..+.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            35699999999999999999999987642 122223333333455566665  5679999997432211           


Q ss_pred             -hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHH-----HHHHhCCCcE
Q psy1169          81 -TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAK-----KFAEENDLIF  154 (218)
Q Consensus        81 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~  154 (218)
                       ...+++.+|++++++|+.+..+.+.. .+...+..   .+.|+++++||+|+...+....++..     .+......++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             13467889999999999987766543 22222222   47899999999999765543333332     2222346789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         155 VEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       155 ~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      +++||++|.|++++|+.+.+.+.+.
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999998877554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.85  E-value=1.4e-21  Score=159.77  Aligned_cols=153  Identities=20%  Similarity=0.176  Sum_probs=101.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhh--------Hhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RSY   84 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   84 (218)
                      ..++|+|+|++|+|||||+|+|++..+. ....+..+.+.....+.+++  ..+.+|||+|...+....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4689999999999999999999976432 22223334444344445555  457899999986654332        235


Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGEN  164 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  164 (218)
                      +..+|++|+|+|++++.+.+. ..|+..+.     ..|+++|+||+|+.......  ....+.  ...+++++||+++.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999999877655 34544442     36999999999997654432  111111  356799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKIYQ  178 (218)
Q Consensus       165 i~~~~~~i~~~~~~  178 (218)
                      +++++++|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=7.2e-22  Score=157.24  Aligned_cols=167  Identities=19%  Similarity=0.321  Sum_probs=95.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCC--------CCceeeeEEEEEEEECCeEEEEEEeeCcch-------hh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ-------ER   76 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   76 (218)
                      ...++|+|+|++|+|||||+++|.+.... ..+        .++.+.......+...+..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            44689999999999999999998764332 222        134444443334444566778999999998       55


Q ss_pred             hhhhhH-------hhhccCCEE-----------EEEEECCC-hhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          77 FRAVTR-------SYYRGAAGA-----------LMVYDITR-RSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        77 ~~~~~~-------~~~~~~d~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      +..+..       .|++.++++           +++|++++ ..++..+. .|+..+    ..++|+++|+||+|+...+
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            555554       565544332           24444443 33443333 344333    3579999999999997666


Q ss_pred             cccH--HHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcCc
Q psy1169         137 DVRY--DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK  184 (218)
Q Consensus       137 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~~  184 (218)
                      ++..  +++.+++...+++++++||+++.+ ++.|..+.+.+.+.++...
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v  239 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSV  239 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence            5543  466777777889999999999999 8899999999988766543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=1.6e-21  Score=161.03  Aligned_cols=151  Identities=17%  Similarity=0.203  Sum_probs=97.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCceeeeEEEEEEEECC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF--M-----------------------------PDCPHTIGVEFGTRIIEVHG   61 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~   61 (218)
                      ...+||+++|.+++|||||+++|+....  .                             .+..+..+.+  .....++.
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~--~~~~~~~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS--ICTSHFST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCC--CCEEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceE--eeeEEEec
Confidence            3569999999999999999999975411  0                             0111111222  22222333


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHH------HHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNH------LSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      ..+.+.||||||+++|......++..+|++|+|+|+++..++..      ....+..+.. . ...|+++++||+|+...
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~-~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T-TCCCEEEEEECGGGGTT
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c-CCCcEEEEEECcCcccc
Confidence            45688999999999999999999999999999999999754322      1122222222 1 12469999999999764


Q ss_pred             ccccHHHHH----HHHHhC-----CCcEEEeccCCCCCHHH
Q psy1169         136 RDVRYDEAK----KFAEEN-----DLIFVEASAMTGENVEQ  167 (218)
Q Consensus       136 ~~~~~~~~~----~~~~~~-----~~~~~~~S~~~~~~i~~  167 (218)
                      ++...+++.    .+....     +++++++||++|.|+++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            433333333    333222     46799999999999975

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.7e-21  Score=141.05  Aligned_cols=118  Identities=21%  Similarity=0.268  Sum_probs=88.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc-
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG-   87 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   87 (218)
                      ....++|+|+|++|||||||+++|.+..+...   ..++.+         .....+.+.+||+||.+.+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            45679999999999999999999998875431   111211         11134578899999998887767777665 


Q ss_pred             ---CCEEEEEEECC-ChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeCCCCCCCccc
Q psy1169          88 ---AAGALMVYDIT-RRSTYNHLSSWLTDTKNL----TNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~Dl~~~~~~  138 (218)
                         +|++|+|||++ +..++..+..|+..+...    ...+.|+++|+||+|+...+.+
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence               89999999999 899999988888766543    2357999999999999765543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=4.3e-21  Score=147.65  Aligned_cols=161  Identities=17%  Similarity=0.243  Sum_probs=93.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-C-------CCceeeeEEEEEEEECCeEEEEEEeeCcchh-------h
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-C-------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-------R   76 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~   76 (218)
                      ....++|+|+|.+|+|||||+|+|+....... +       .++.+.+.....+..++..+.+.+|||||..       .
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            34679999999999999999999876554432 2       4455555555555445556799999999962       2


Q ss_pred             hhhhh-------Hhhhcc-------------CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          77 FRAVT-------RSYYRG-------------AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        77 ~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      +..+.       ..|+..             +|+++++++.+.......-..+++.+..    ++|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            33332       334433             7899998877653221222234444432    79999999999986543


Q ss_pred             cccH--HHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         137 DVRY--DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       137 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      +...  ..+.+.+...+++++++|+.++.++++++.+|.+.+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            3221  234555566788999999999999999887776543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.85  E-value=6.1e-21  Score=148.50  Aligned_cols=156  Identities=22%  Similarity=0.143  Sum_probs=104.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEeeCcchh-h--------hhhhhHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-R--------FRAVTRS   83 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~   83 (218)
                      ...+|+|+|++|+|||||+++|++..+... ..+..+.+.....+..  ...++.+|||||.. .        +......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            445899999999999999999998765321 1111111111222222  34578899999986 2        2233456


Q ss_pred             hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCC
Q psy1169          84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTG  162 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  162 (218)
                      +++.+|++++|+|+++ -+  ....|+...  ....+.|+++++||+|+...+....+....+....+. .++++||+++
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~--l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNK--LREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHH--HHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHH--HHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            6789999999999977 22  222333222  1235789999999999975333333455556665665 6899999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKI  176 (218)
Q Consensus       163 ~~i~~~~~~i~~~~  176 (218)
                      .|++++++.+.+.+
T Consensus       160 ~~v~~l~~~i~~~l  173 (301)
T 1ega_A          160 LNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999998887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.84  E-value=1.9e-21  Score=158.76  Aligned_cols=152  Identities=16%  Similarity=0.101  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh--------hhhhhhHhhhcc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTRSYYRG   87 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   87 (218)
                      ++|+++|.+|||||||+|+|.+..+.. ...+.+.+..............+.+|||+|.+        .+...+..+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            689999999999999999998765432 12233333222233334344578999999985        566677888999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCC-cEEEeccCCCCCHH
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDL-IFVEASAMTGENVE  166 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~  166 (218)
                      +|++|+|+|+.+..++... .+...+.   ..+.|+++|+||+|+...+..    ..++. ..++ .++++||++|.|+.
T Consensus        83 ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             CSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChH
Confidence            9999999999987775542 2222232   357899999999998644211    11122 2343 68999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         167 QAFLETAKKIY  177 (218)
Q Consensus       167 ~~~~~i~~~~~  177 (218)
                      ++++++.+.+.
T Consensus       154 ~L~~~i~~~l~  164 (436)
T 2hjg_A          154 DLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHTGG
T ss_pred             HHHHHHHHhcC
Confidence            99999887664

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.83  E-value=9.8e-23  Score=168.57  Aligned_cols=159  Identities=20%  Similarity=0.208  Sum_probs=113.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ++.++|+|+|.+++|||||+++|.+..+.....++.+.++....+..+ ....+.||||||++.|..+...++..+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            356789999999999999999998765544444444444333333232 1236789999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc-HHHHHHH---HHh--CCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR-YDEAKKF---AEE--NDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~---~~~--~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|+++....+....|. .+   ...++|+++++||+|+....... ..+...+   +..  ..++++++||++|.|++
T Consensus        81 LVVDa~dg~~~qt~e~l~-~~---~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           81 LVVAADDGVMKQTVESIQ-HA---KDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             EECBSSSCCCHHHHHHHH-HH---HTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEEECCCCccHHHHHHHH-HH---HHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            999999977665554432 22   23578999999999996532211 1122211   111  13579999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         167 QAFLETAKKI  176 (218)
Q Consensus       167 ~~~~~i~~~~  176 (218)
                      ++|+++...+
T Consensus       157 eLle~I~~l~  166 (537)
T 3izy_P          157 ALAEATIALA  166 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHhh
Confidence            9999998765

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.83  E-value=2.6e-20  Score=150.32  Aligned_cols=159  Identities=14%  Similarity=0.087  Sum_probs=107.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPD-------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA   79 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   79 (218)
                      ..++|+++|..++|||||+++|++..       +...       .....+.+.......+......+.||||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998631       1100       000111222222233444446788999999999988


Q ss_pred             hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccc---cHHHHHHHHHhCC----
Q psy1169          80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV---RYDEAKKFAEEND----  151 (218)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~---~~~~~~~~~~~~~----  151 (218)
                      ....++..+|++|+|+|+++....+....| ..+..   .++| +++++||+|+......   ..+++++++...+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            888889999999999999997655544443 33332   3678 7899999999753221   1235566666654    


Q ss_pred             -CcEEEeccCCCCC----------HHHHHHHHHHHH
Q psy1169         152 -LIFVEASAMTGEN----------VEQAFLETAKKI  176 (218)
Q Consensus       152 -~~~~~~S~~~~~~----------i~~~~~~i~~~~  176 (218)
                       ++++++||+++.|          +.++++.+.+.+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence             6899999998764          666666665543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=3.5e-20  Score=145.08  Aligned_cols=120  Identities=18%  Similarity=0.264  Sum_probs=96.0

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~  130 (218)
                      ..+.+.+||++|++.++.+|..|+++++++|||+|++          +..++.....|+..+.... -.++|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            4578999999999999999999999999999999998          6788888888888776543 2579999999999


Q ss_pred             CCCCCc---------------cccHHHHHHHHHh---------------------------CCCcEEEeccCCCCCHHHH
Q psy1169         131 DLEGSR---------------DVRYDEAKKFAEE---------------------------NDLIFVEASAMTGENVEQA  168 (218)
Q Consensus       131 Dl~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~S~~~~~~i~~~  168 (218)
                      |+...+               ....+++.+++..                           ..+.+++|||++..|++.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            984311               1234555554432                           2467889999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy1169         169 FLETAKKIYQNIK  181 (218)
Q Consensus       169 ~~~i~~~~~~~~~  181 (218)
                      |..+.+.+++++.
T Consensus       319 F~~v~~~Il~~l~  331 (340)
T 4fid_A          319 FMLAVDVIMKNMA  331 (340)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987433

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.82  E-value=4.4e-20  Score=147.22  Aligned_cols=146  Identities=9%  Similarity=0.009  Sum_probs=104.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      +|+++|.+++|||||+++|+        .+..+.+....  .+......+.||||||+++|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~--~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMY--NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEE--EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEE--EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999997        11122222222  233344568999999999998877888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhcCCCCeE-EEEee-CCCCCCCccccH--HHHHHHHHhC---CCcEEE--eccCC---CCC
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGN-KMDLEGSRDVRY--DEAKKFAEEN---DLIFVE--ASAMT---GEN  164 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--~S~~~---~~~  164 (218)
                       .. ..+.....++..+..   .++|. ++++| |+|+ ..+....  +++++++...   .+++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             44 334444555554443   35676 88888 9999 4322221  3455555543   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1169         165 VEQAFLETAKKIYQ  178 (218)
Q Consensus       165 i~~~~~~i~~~~~~  178 (218)
                      ++++++.|.+.+-.
T Consensus       167 i~~L~~~l~~~~~~  180 (370)
T 2elf_A          167 VDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc
Confidence            99999999887654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.82  E-value=8.8e-20  Score=144.24  Aligned_cols=118  Identities=14%  Similarity=0.190  Sum_probs=93.6

Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT----------RRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKM  130 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~  130 (218)
                      ..+.+.+||++|++.++.++..++++++++|||||++          +..+++....|+..+.... ..++|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5789999999999999999999999999999999998          7788999988988876543 2579999999999


Q ss_pred             CCCCCcc---------------------ccHHHHHHHHHh----------------CCCcEEEeccCCCCCHHHHHHHHH
Q psy1169         131 DLEGSRD---------------------VRYDEAKKFAEE----------------NDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus       131 Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |+...+.                     ...+++.+++..                ..+.+++|||+++.|++++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211                     124566666432                233468999999999999999999


Q ss_pred             HHHHHh
Q psy1169         174 KKIYQN  179 (218)
Q Consensus       174 ~~~~~~  179 (218)
                      +.+++.
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.82  E-value=2.3e-20  Score=151.08  Aligned_cols=149  Identities=15%  Similarity=0.143  Sum_probs=102.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--CC-----CceeeeEEEEEEEECCeEEEEEEeeCcchhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ--------KFMPD--CP-----HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER   76 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (218)
                      ....++|+++|.+++|||||+++|++.        .+...  .+     ...+.+.......++.....+.||||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            356799999999999999999999863        11110  00     0112222223333444456788999999999


Q ss_pred             hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccc---cHHHHHHHHHhCC-
Q psy1169          77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV---RYDEAKKFAEEND-  151 (218)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-  151 (218)
                      |......++..+|++|+|+|+++....+. ..|+..+..   .++| +++++||+|+......   ..+++.+++...+ 
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            98888889999999999999998765443 345444443   3678 8899999999753221   1234556666544 


Q ss_pred             ----CcEEEeccCCCCC
Q psy1169         152 ----LIFVEASAMTGEN  164 (218)
Q Consensus       152 ----~~~~~~S~~~~~~  164 (218)
                          .+++++||+++.|
T Consensus       164 ~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          164 PGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CTTTSCEEECCHHHHHH
T ss_pred             cccCCCEEEccHHHhhh
Confidence                6899999999876

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.82  E-value=2.7e-20  Score=154.45  Aligned_cols=118  Identities=19%  Similarity=0.162  Sum_probs=84.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCC------------------C----CCCCceeeeEEEEEEEECCeEEEEEEe
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM------------------P----DCPHTIGVEFGTRIIEVHGEKIKLQIW   69 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~   69 (218)
                      .....+|+|+|.+|+|||||+++|+...-.                  .    +..+..+.......+.+  ..+.+.||
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~li   87 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLL   87 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEE
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEE
Confidence            456789999999999999999999621100                  0    00011112222223333  34678899


Q ss_pred             eCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      ||||+..|......+++.+|++|+|+|+++..+.+....|. .+.   ..++|+++|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCS
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccc
Confidence            99999999999999999999999999999987777665543 233   247899999999998643

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=2.7e-19  Score=145.89  Aligned_cols=156  Identities=23%  Similarity=0.236  Sum_probs=104.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC----------CCCce-------------------eeeEEEEEEEEC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD----------CPHTI-------------------GVEFGTRIIEVH   60 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~----------~~~~~-------------------~~~~~~~~~~~~   60 (218)
                      ....++|+++|..++|||||+++|++..  +...          ..++.                   +.+.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            4567999999999999999999998643  1110          00110                   111111111223


Q ss_pred             CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--
Q psy1169          61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--  138 (218)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--  138 (218)
                      .....+.||||||++.|......++..+|++|+|+|+++....+.. .++..+...  ...|+++++||+|+....+.  
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL--GIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEEcCcCCcccHHHH
Confidence            3345788999999999988888889999999999999987544333 333333332  12369999999999753211  


Q ss_pred             --cHHHHHHHHHhCC-----CcEEEeccCCCCCHHHHHH
Q psy1169         139 --RYDEAKKFAEEND-----LIFVEASAMTGENVEQAFL  170 (218)
Q Consensus       139 --~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~~  170 (218)
                        ..++...++...+     ++++++||++|.|+++++.
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence              1244566666666     6799999999999987543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.82  E-value=4.7e-21  Score=156.27  Aligned_cols=155  Identities=20%  Similarity=0.242  Sum_probs=103.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCceeeeEEEEEEEECC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD-----------------------------CPHTIGVEFGTRIIEVHG   61 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   61 (218)
                      ...++|+++|..++|||||+++|+..  .+...                             ..+..+.+...  ..++.
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~--~~~~~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF--MRFET   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEEC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE--EEEec
Confidence            45799999999999999999999864  32211                             01112222222  22333


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhh----hcCCCC-eEEEEeeCCCCCCCc
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN----LTNPNT-VIFLIGNKMDLEGSR  136 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~-piivv~nK~Dl~~~~  136 (218)
                      ....+.||||||+++|......++..+|++|+|+|+++ .+|+....|..+...    ....+. |+++++||+|+....
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            45678999999999999888899999999999999999 667644332221111    111244 589999999997521


Q ss_pred             --c----ccHHHHHHHHHhCC-----CcEEEeccCCCCCHHHHHH
Q psy1169         137 --D----VRYDEAKKFAEEND-----LIFVEASAMTGENVEQAFL  170 (218)
Q Consensus       137 --~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~~  170 (218)
                        +    ...+++..++...+     ++++++||++|.|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence              1    12345666666654     6799999999999986554

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=9e-20  Score=153.08  Aligned_cols=159  Identities=20%  Similarity=0.168  Sum_probs=105.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CceeeeEEEEEE------------EECCeEEEEEEeeCcchhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP----HTIGVEFGTRII------------EVHGEKIKLQIWDTAGQERF   77 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~   77 (218)
                      +.++|+|+|++++|||||+++|++..+.....    .+.+..+.....            .+......+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999998754432211    122221111000            00001125889999999999


Q ss_pred             hhhhHhhhccCCEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc-------------H-
Q psy1169          78 RAVTRSYYRGAAGALMVYDITR---RSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR-------------Y-  140 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-------------~-  140 (218)
                      ..+...++..+|++|+|+|+++   +.+++.+..    +..   .++|+++++||+|+.......             . 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9988889999999999999999   555544332    222   578999999999986422100             0 


Q ss_pred             ---------HHHHHHHHhC---------------CCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         141 ---------DEAKKFAEEN---------------DLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       141 ---------~~~~~~~~~~---------------~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                               .+........               ..+++++||++|.|++++++++...+...
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                     0111111111               23799999999999999999998877543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.81  E-value=3e-20  Score=152.44  Aligned_cols=154  Identities=16%  Similarity=0.080  Sum_probs=99.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcc--------hhhhhhhhHhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG--------QERFRAVTRSYY   85 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~   85 (218)
                      ...+|+|+|.+|||||||+|+|++..+... ..+.+.+..............+.+|||+|        .+.+......++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            357999999999999999999988654321 22333333333444454556889999999        677778888899


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169          86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV  165 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (218)
                      +.+|++|+|+|..+..+...  .|+..+.  ...+.|+++|+||+|+.....    ...++....-...+++||.++.|+
T Consensus       101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l--~~~~~pvilV~NK~D~~~~~~----~~~e~~~lg~~~~~~iSA~~g~gv  172 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD--EEVAKIL--YRTKKPVVLAVNKLDNTEMRA----NIYDFYSLGFGEPYPISGTHGLGL  172 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH--HHHHHHH--TTCCSCEEEEEECC-------------CCSGGGSSSSEEECCTTTCTTH
T ss_pred             hhCCEEEEEEeCCCCCChHH--HHHHHHH--HHcCCCEEEEEECccchhhhh----hHHHHHHcCCCceEEeecccccch
Confidence            99999999999887544332  2332222  225799999999999854321    111122221224679999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         166 EQAFLETAKKI  176 (218)
Q Consensus       166 ~~~~~~i~~~~  176 (218)
                      .++++.+.+.+
T Consensus       173 ~~L~~~i~~~l  183 (456)
T 4dcu_A          173 GDLLDAVAEHF  183 (456)
T ss_dssp             HHHHHHHHTTG
T ss_pred             HHHHHHHHhhc
Confidence            99999887655

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.81  E-value=4.7e-20  Score=143.46  Aligned_cols=164  Identities=13%  Similarity=0.109  Sum_probs=105.7

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCcee--------------------eeE-----------
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC------PHTIG--------------------VEF-----------   52 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~------~~~~~--------------------~~~-----------   52 (218)
                      .+....++|+|+|.+|||||||+++|++..+.+..      .++..                    .+.           
T Consensus        21 ~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~  100 (299)
T 2aka_B           21 NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAET  100 (299)
T ss_dssp             CTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHH
Confidence            34566789999999999999999999988764221      11100                    000           


Q ss_pred             ------------EEEEEEEC-CeEEEEEEeeCcchh-------------hhhhhhHhhhccCCEEE-EEEECCChhhHHH
Q psy1169          53 ------------GTRIIEVH-GEKIKLQIWDTAGQE-------------RFRAVTRSYYRGAAGAL-MVYDITRRSTYNH  105 (218)
Q Consensus        53 ------------~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~  105 (218)
                                  ....+.+. .....+.||||||..             .+..+...+++.++.+| +|+|+++..+.+.
T Consensus       101 ~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~  180 (299)
T 2aka_B          101 DRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD  180 (299)
T ss_dssp             HHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred             HHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence                        00000000 012578899999953             35567778888888776 7999988655444


Q ss_pred             HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC--C-CcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         106 LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN--D-LIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       106 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ...++..+.   ..+.|+++|+||+|+........+.........  + .+++++||+++.|++++++.+.+..
T Consensus       181 ~~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          181 ALKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            334444443   357899999999999765432222221100011  2 3578899999999999999988743

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=1.7e-20  Score=154.06  Aligned_cols=155  Identities=18%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeeEEEEEEEECC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-----------------------------DCPHTIGVEFGTRIIEVHG   61 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   61 (218)
                      ...++|+++|..++|||||+++|+.  +.+..                             +.....+.+.....+..+ 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            5679999999999999999999974  22110                             000111111111122222 


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh---hHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCc-
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSR-  136 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~-  136 (218)
                       ...+.||||||++.|......++..+|++|+|+|+++..   +|+....|...+......++| +++++||+|+.... 
T Consensus       120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence             357889999999999888888899999999999999863   332222222222222224677 99999999995421 


Q ss_pred             --c---ccHHHHHHHHHhC-------CCcEEEeccCCCCCHHHHH
Q psy1169         137 --D---VRYDEAKKFAEEN-------DLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       137 --~---~~~~~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~  169 (218)
                        +   ...+++..++...       +++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence              1   1123455555544       4669999999999998765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2e-20  Score=157.85  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=100.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------------------------CCceeeeEEEEEEEECC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-------------------------------PHTIGVEFGTRIIEVHG   61 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   61 (218)
                      ...++|+++|.+++|||||+++|++.......                               .+.++.+.....+  ..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence            45789999999999999999999865321110                               0111222222222  23


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh---HHHHHHHHHHHhhhcCCC-CeEEEEeeCCCCCCCcc
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YNHLSSWLTDTKNLTNPN-TVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~piivv~nK~Dl~~~~~  137 (218)
                      ....+.||||||++.|......++..+|++|+|+|+++...   +.....+...+......+ .|+++|+||+|+...+.
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            44678999999999999888889999999999999998531   100111111112112233 45999999999976433


Q ss_pred             ccHH----HHHHHHHhC-----CCcEEEeccCCCCCHHHH
Q psy1169         138 VRYD----EAKKFAEEN-----DLIFVEASAMTGENVEQA  168 (218)
Q Consensus       138 ~~~~----~~~~~~~~~-----~~~~~~~S~~~~~~i~~~  168 (218)
                      ...+    ++..++...     +++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            3222    233333332     468999999999999876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=5.4e-19  Score=130.49  Aligned_cols=157  Identities=16%  Similarity=0.197  Sum_probs=100.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----------hhhhhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAVT   81 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   81 (218)
                      .....+|+++|++|+|||||+++|.+..+.....++.+.......+.+++   .+.+||+||..          .+....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999987664333344444433333333332   46799999963          233333


Q ss_pred             Hhhh---ccCCEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHHHHHHHHHhCC--C
Q psy1169          82 RSYY---RGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYDEAKKFAEEND--L  152 (218)
Q Consensus        82 ~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~  152 (218)
                      ..++   ..++++++++|+.+..++..  +..|+   ..   .+.|+++++||+|+....+  .....+.+++....  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            4444   47889999999998765432  22332   21   4688999999999865322  12345666665543  4


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         153 IFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       153 ~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      .++++|++++.+++++++.|.+.+.
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHh
Confidence            6789999999999999998887653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.79  E-value=4.3e-19  Score=155.90  Aligned_cols=159  Identities=15%  Similarity=0.092  Sum_probs=105.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-------FMP-------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF   77 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (218)
                      ....++|+++|..++|||||+++|++..       +..       ....+.+.+.....+.++.....+.||||||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3567999999999999999999998631       000       00112222222222334444567899999999999


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCccc---cHHHHHHHHHhCC--
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDV---RYDEAKKFAEEND--  151 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~---~~~~~~~~~~~~~--  151 (218)
                      ......++..+|++|+|+|+++....+.. .++..+..   .++| +++++||+|+....+.   ..+++..++...+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr-EhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTHH-HHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHHH-HHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            88888899999999999999987544333 34443333   3577 7899999999753321   1235566666554  


Q ss_pred             ---CcEEEeccCCCC--------CHHHHHHHHHH
Q psy1169         152 ---LIFVEASAMTGE--------NVEQAFLETAK  174 (218)
Q Consensus       152 ---~~~~~~S~~~~~--------~i~~~~~~i~~  174 (218)
                         ++++++||+++.        |+.++++.|.+
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence               689999999993        46666655554

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.79  E-value=2.7e-21  Score=158.80  Aligned_cols=156  Identities=17%  Similarity=0.203  Sum_probs=104.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ++..+|+++|+.++|||||+++|....+.....+..+.+.....+..++  ..+.||||||++.|..+...++..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4567999999999999999999987544333222222222122222232  46789999999999998888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc--ccHH--HHHHHHHhC--CCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD--VRYD--EAKKFAEEN--DLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~--~~~~~~~~~--~~~~~~~S~~~~~~i~  166 (218)
                      +|+|+++....+....| ..+.   ..++|+++++||+|+.....  +..+  +...+...+  .++++++||++|.|++
T Consensus        80 LVVda~~g~~~qT~e~l-~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI-QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EEEETTTBSCTTTHHHH-HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             EEeecccCccHHHHHHH-HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            99999885333333222 2222   24689999999999964321  1100  000011122  3689999999999999


Q ss_pred             HHHHHHHH
Q psy1169         167 QAFLETAK  174 (218)
Q Consensus       167 ~~~~~i~~  174 (218)
                      ++|+++..
T Consensus       156 eLle~I~~  163 (501)
T 1zo1_I          156 ELLDAILL  163 (501)
T ss_dssp             THHHHTTT
T ss_pred             hhhhhhhh
Confidence            99998864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=2.5e-18  Score=147.17  Aligned_cols=125  Identities=18%  Similarity=0.236  Sum_probs=89.5

Q ss_pred             ccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHhC--CCC------C----------CCCCceeeeEEEEEEEECCeEEE
Q psy1169           4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFM------P----------DCPHTIGVEFGTRIIEVHGEKIK   65 (218)
Q Consensus         4 ~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~~--~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~   65 (218)
                      |...+..+.....+|+|+|..|+|||||+++|+..  .+.      .          +.....+.......+.+  ..+.
T Consensus         1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~--~~~~   78 (691)
T 1dar_A            1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHR   78 (691)
T ss_dssp             CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE--TTEE
T ss_pred             CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE--CCeE
Confidence            44556667788999999999999999999999842  110      0          00111111111222222  2467


Q ss_pred             EEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      +.||||||+..|...+..+++.+|++|+|+|+++..+++....|.. +..   .++|+++++||+|+..
T Consensus        79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            8999999999999889999999999999999999888877766653 322   4789999999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.77  E-value=4.7e-18  Score=129.82  Aligned_cols=122  Identities=13%  Similarity=0.112  Sum_probs=81.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhc------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR------   86 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------   86 (218)
                      ..++|+|+|..|+|||||+++|++..... ...+..+.......+..++  ..+.||||||++.+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            57999999999999999999999877522 2222222333333444444  47889999998766544333332      


Q ss_pred             ---cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCC--CeEEEEeeCCCCCCCcc
Q psy1169          87 ---GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPN--TVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        87 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~Dl~~~~~  137 (218)
                         .+|++|+|++++.......-..|+..+......+  .|+++|+||+|+...+.
T Consensus       113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~  168 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE  168 (262)
T ss_dssp             TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred             hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence               7899999999987542222235666665544333  48999999999964433

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.77  E-value=4.3e-19  Score=145.46  Aligned_cols=150  Identities=16%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCceeeeEEEEEEEECC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD-----------------------------CPHTIGVEFGTRIIEVHG   61 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   61 (218)
                      ...++|+++|.+++|||||+++|++.  .+...                             .....+.+.....  ++.
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~--~~~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK--FET   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE--EEC
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE--Eec
Confidence            45699999999999999999999863  22110                             0011122211222  233


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh---hH----HHHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TY----NHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE  133 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~  133 (218)
                      ....+.||||||++.|......++..+|++|+|+|+++..   +|    +.... +..+..   .++| +++++||+|+.
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~-~~~~~~---~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREH-ALLAFT---LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHH-HHHHHH---TTCCEEEEEEECGGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHH-HHHHHH---cCCCeEEEEEEccccc
Confidence            4467999999999999988888999999999999999863   22    22222 222222   3565 89999999996


Q ss_pred             CCccc----cHHHHHHHHHhCC-----CcEEEeccCCCCCHHHH
Q psy1169         134 GSRDV----RYDEAKKFAEEND-----LIFVEASAMTGENVEQA  168 (218)
Q Consensus       134 ~~~~~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~  168 (218)
                      ...+.    ..+++..++...+     ++++++||++|.|+.++
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            42211    1234555555443     68999999999998754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.76  E-value=7e-18  Score=143.91  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=82.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------ceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----------------TIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      .+...+|+|+|+.|+|||||+++|++.........                ..+..+......+....+.+.||||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            35678999999999999999999985332110000                00112112222222235688899999999


Q ss_pred             hhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      .|......+++.+|++++|+|+.+....+.. .++..+..   .++|+++++||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence            9988899999999999999999886554443 34443433   468999999999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=4.7e-19  Score=137.75  Aligned_cols=165  Identities=18%  Similarity=0.281  Sum_probs=88.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC-CCCCCC--------CCceeeeEEEEEEEECCeEEEEEEeeCcch-------hh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ-KFMPDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ-------ER   76 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   76 (218)
                      ...++|+|+|++|+|||||+++|.+. .+....        .++.............+....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998765 333221        111111111112222334568899999997       44


Q ss_pred             hhhhhH-------hhhccC-------------CEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          77 FRAVTR-------SYYRGA-------------AGALMVYDITRRSTYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        77 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      +..+..       .++...             ++++|+.+.+. .+++.+. .++.   ... ...++++|+||.|+...
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~---~l~-~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMK---AIH-NKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHH---HHT-TTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHH---HHH-hcCCEEEEEEeCCCCCH
Confidence            444443       444332             33444444322 1222222 2222   222 46789999999999765


Q ss_pred             ccc--cHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1169         136 RDV--RYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG  183 (218)
Q Consensus       136 ~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~  183 (218)
                      +++  ..+++.+++...+++++++||+++ +++++|..+.+.+.+..+..
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~a  219 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPFS  219 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCce
Confidence            443  235678888888999999999999 99999999999988765533

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.76  E-value=8.1e-18  Score=135.54  Aligned_cols=159  Identities=15%  Similarity=0.088  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh----hhhhhH---hhhccCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTR---SYYRGAA   89 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~~d   89 (218)
                      .|+|+|++|||||||+++|.+........+..+.......+..++ ...+.+||++|...    +..+..   ..+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999987643211111112222233343333 24678999999632    111222   2345799


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      .+++++|++ ...+..+..|.+++..+..  ...|.++++||+|+...  ...++..+.....+..++.+||+++.|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999998 6667777777666554431  25788999999998644  233445555566678899999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy1169         168 AFLETAKKIYQN  179 (218)
Q Consensus       168 ~~~~i~~~~~~~  179 (218)
                      ++++|.+.+.+.
T Consensus       315 L~~~i~~~l~~~  326 (416)
T 1udx_A          315 LKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=8.9e-19  Score=139.70  Aligned_cols=158  Identities=13%  Similarity=0.159  Sum_probs=104.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEE---------------------------------------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT---------------------------------------   54 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------   54 (218)
                      ...+|+|+|++|||||||+++|++..+.+......+.....                                       
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            45699999999999999999999977633322211100000                                       


Q ss_pred             -------------EEEEE-CCeEEEEEEeeCcchhhh-------------hhhhHhhhccCCEEEEEEECCChhhHHHHH
Q psy1169          55 -------------RIIEV-HGEKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLS  107 (218)
Q Consensus        55 -------------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  107 (218)
                                   ..+.+ ......+.+|||||...+             ..+...|++.+|++|+++|..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                         00000 011235789999997654             567788999999999999876543221  2


Q ss_pred             HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169         108 SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus       108 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      .|+..+......+.|+++|+||+|+........+....+....+++|+++++..+.++++.+..+.
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            334444444445789999999999976655444444444455678899999998887776655433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.76  E-value=1.6e-17  Score=142.25  Aligned_cols=164  Identities=18%  Similarity=0.267  Sum_probs=108.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceee----eE----E-E----------------------------
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGV----EF----G-T----------------------------   54 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~----~~----~-~----------------------------   54 (218)
                      ...++|+|+|.+|+|||||+|+|++..+.. ...+++..    .+    . .                            
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            457899999999999999999999876543 22222210    00    0 0                            


Q ss_pred             ----------------EEEEECCeE--EEEEEeeCcchhhh---hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHH
Q psy1169          55 ----------------RIIEVHGEK--IKLQIWDTAGQERF---RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT  113 (218)
Q Consensus        55 ----------------~~~~~~~~~--~~~~i~D~~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  113 (218)
                                      ..+..+...  ..+.||||||....   ......+++.+|++|+|+|+++..+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                            001111100  35889999997653   345667889999999999999988877776655444


Q ss_pred             hhhcCCCCeEEEEeeCCCCCCCccccH------H----HHHH-----HHHh--------CCCcEEEeccC----------
Q psy1169         114 KNLTNPNTVIFLIGNKMDLEGSRDVRY------D----EAKK-----FAEE--------NDLIFVEASAM----------  160 (218)
Q Consensus       114 ~~~~~~~~piivv~nK~Dl~~~~~~~~------~----~~~~-----~~~~--------~~~~~~~~S~~----------  160 (218)
                      ..   .+.|+++|+||+|+.....+..      +    ....     +...        ...+++++||+          
T Consensus       227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            32   3678999999999864431111      0    1111     1111        12468999999          


Q ss_pred             ----CCCCHHHHHHHHHHHHHHh
Q psy1169         161 ----TGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       161 ----~~~~i~~~~~~i~~~~~~~  179 (218)
                          ++.|+++++..+.+.+.+.
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hhhhhccCHHHHHHHHHHHHHHh
Confidence                9999999999998877554

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.75  E-value=5.6e-20  Score=154.68  Aligned_cols=149  Identities=18%  Similarity=0.200  Sum_probs=82.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCceeeeEEEEEEEEC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK--FM-----------------------------PDCPHTIGVEFGTRIIEVH   60 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~   60 (218)
                      ....++|+++|.+++|||||+++|+...  +.                             .+..+.++.+...  ..+.
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~--~~~~  251 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAS--TTFE  251 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeE--EEEE
Confidence            4567899999999999999999996421  00                             0111122222222  2223


Q ss_pred             CeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-------hHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCC
Q psy1169          61 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-------TYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDL  132 (218)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl  132 (218)
                      .....+.||||||++.|......++..+|++|+|+|+++..       ..+.. ..+..+..   .++| +++|+||+|+
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~-e~l~~~~~---lgip~iIvviNKiDl  327 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR-EHAYLLRA---LGISEIVVSVNKLDL  327 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHH-HHHHHHHH---SSCCCEEEEEECGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHH-HHHHHHHH---cCCCeEEEEEecccc
Confidence            34468889999999998888888889999999999998642       11111 11222222   3465 8999999998


Q ss_pred             CCCcccc----HHHHHHHH-HhCCC-----cEEEeccCCCCCHH
Q psy1169         133 EGSRDVR----YDEAKKFA-EENDL-----IFVEASAMTGENVE  166 (218)
Q Consensus       133 ~~~~~~~----~~~~~~~~-~~~~~-----~~~~~S~~~~~~i~  166 (218)
                      .......    ..++..+. ...++     +++++||++|.|+.
T Consensus       328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            6532211    13344444 33343     69999999999997

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.75  E-value=1.5e-17  Score=130.19  Aligned_cols=164  Identities=10%  Similarity=0.134  Sum_probs=98.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----ce-eeeEEEE-------------------------------
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----TI-GVEFGTR-------------------------------   55 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~----~~-~~~~~~~-------------------------------   55 (218)
                      ....++|+|+|.+|+|||||+|+|++..+.+....    .. .......                               
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            35568999999999999999999998876322110    00 0000000                               


Q ss_pred             ---------------------EEE-ECCeEEEEEEeeCcchhh-------------hhhhhHhhhccCCEEEEEEECCCh
Q psy1169          56 ---------------------IIE-VHGEKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRR  100 (218)
Q Consensus        56 ---------------------~~~-~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~  100 (218)
                                           .+. .......+.||||||...             +......+++.+|++|+|+|..+.
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~  180 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT  180 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence                                 000 011124688999999642             556777889999999999997443


Q ss_pred             h-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC------CCCHHHHHHHHH
Q psy1169         101 S-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT------GENVEQAFLETA  173 (218)
Q Consensus       101 ~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~------~~~i~~~~~~i~  173 (218)
                      . .......+...+   ...+.|+++|+||+|+........+.+.......+..++++++..      +.|+.++++.+.
T Consensus       181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence            2 111111222222   235789999999999976543222222211111225677766653      678888888777


Q ss_pred             HHHHH
Q psy1169         174 KKIYQ  178 (218)
Q Consensus       174 ~~~~~  178 (218)
                      +.+.+
T Consensus       258 ~~~~~  262 (315)
T 1jwy_B          258 LYFKN  262 (315)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            66643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=2.4e-17  Score=136.94  Aligned_cols=119  Identities=18%  Similarity=0.194  Sum_probs=79.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------------CCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC--------------------PHTIGVEFGTRIIEVHGEKIKLQIWDTA   72 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~   72 (218)
                      ....+|+|+|.+|+|||||+++|+...-....                    ....+.+.......+....+.+.|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            56799999999999999999999863211000                    0011111111111222234678899999


Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      |+..|......++..+|++|+|+|+++....+. ..++..+.   ..++|+++++||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCccc
Confidence            999988888889999999999999998654332 22332222   357899999999998643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.73  E-value=1.9e-17  Score=127.03  Aligned_cols=122  Identities=12%  Similarity=0.112  Sum_probs=78.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhh-------hHhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TRSY   84 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~   84 (218)
                      ...++|+|+|.+|+|||||+++|++..+.... .+..+...  ....+......+.||||||...+...       ...+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP--VMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSC--EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceee--EEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999987753211 11112222  22222223467889999998654321       1122


Q ss_pred             --hccCCEEEEEEECCChhhHHH-HHHHHHHHhhhcCCC--CeEEEEeeCCCCCCCcc
Q psy1169          85 --YRGAAGALMVYDITRRSTYNH-LSSWLTDTKNLTNPN--TVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        85 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~piivv~nK~Dl~~~~~  137 (218)
                        .+.+|++|+|+|++... +.. -..|+..+....+.+  .|+++|+||+|+...+.
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence              34799999999987632 322 235666665543333  69999999999975543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.73  E-value=1.2e-17  Score=132.53  Aligned_cols=117  Identities=18%  Similarity=0.223  Sum_probs=90.4

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCC
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMD  131 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D  131 (218)
                      .+.+.+||++|++.++..+..++++++++|||+|+++          ..++.....|+..+.... -.++|+++++||.|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999999          778998888888776542 25799999999999


Q ss_pred             CCCCc----------------cccHHHHHHHHH-----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         132 LEGSR----------------DVRYDEAKKFAE-----------ENDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       132 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      +...+                .+..+++..++.           ...+.+++|||+++.|++++|+++.+.+++.
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence            85322                255677777651           3457789999999999999999999988764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.72  E-value=3.7e-17  Score=130.75  Aligned_cols=122  Identities=18%  Similarity=0.185  Sum_probs=97.9

Q ss_pred             EEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEE
Q psy1169          56 IIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDTKNLT-NPNTVIF  124 (218)
Q Consensus        56 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pii  124 (218)
                      .+.++  .+.+.|||++|++.++.+|..|+++++++|||||+++          ..+|+....|+..+.... ..++|++
T Consensus       211 ~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii  288 (402)
T 1azs_C          211 KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI  288 (402)
T ss_dssp             EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred             EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence            34444  3789999999999999999999999999999999999          889999999998887653 3579999


Q ss_pred             EEeeCCCCCCCcc---c---------------------------cHHHHHHHH-----Hh--------CCCcEEEeccCC
Q psy1169         125 LIGNKMDLEGSRD---V---------------------------RYDEAKKFA-----EE--------NDLIFVEASAMT  161 (218)
Q Consensus       125 vv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S~~~  161 (218)
                      ||+||.|+...+.   +                           ..+++..++     ..        ..+.+++|||++
T Consensus       289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d  368 (402)
T 1azs_C          289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD  368 (402)
T ss_dssp             EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred             EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence            9999999843221   1                           134555553     21        245678999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q psy1169         162 GENVEQAFLETAKKIYQN  179 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~~  179 (218)
                      +.||+++|.++.+.+++.
T Consensus       369 ~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          369 TENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999998888765

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=2.8e-16  Score=134.71  Aligned_cols=120  Identities=18%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------C-----CCceeeeEEEEEEEEC-----CeEEEEE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD-----------C-----PHTIGVEFGTRIIEVH-----GEKIKLQ   67 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~   67 (218)
                      +..+..+|+|+|..|+|||||+++|+...  +...           .     ....+.......+.+.     +..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            44678999999999999999999997531  1110           0     0111222112222222     2348899


Q ss_pred             EeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      ||||||+.+|......+++.+|++|+|+|+++....+....|.. +.   ..++|+++++||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence            99999999998888999999999999999999876665554432 22   24789999999999854

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=134.20  Aligned_cols=159  Identities=19%  Similarity=0.268  Sum_probs=81.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCC-------CCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDC-------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------   78 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------   78 (218)
                      .-.++|+|+|++|+|||||+++|.+..+. ...       .++.........+...+....+.+||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            44588999999999999999999987653 211       1122211111111222334578999999975431      


Q ss_pred             -hh------------------hHhhhccCCEEEEEEECCCh-hhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          79 -AV------------------TRSYYRGAAGALMVYDITRR-STYNHLS-SWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        79 -~~------------------~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                       .+                  ...++..+++.+++|..... .++.... .|+..+.    .++|+++|+||+|+...++
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence             11                  12233445544444444432 2333332 4555443    3799999999999976655


Q ss_pred             ccH--HHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169         138 VRY--DEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       138 ~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      +..  ..+.+++...+++++++|+.++.+++++|..+.+.
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            543  56777777889999999999999999877666543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.71  E-value=3.8e-16  Score=133.75  Aligned_cols=119  Identities=18%  Similarity=0.172  Sum_probs=84.8

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC-----------C-----CCceeeeEEEEEEEECCeEEEEEEeeCc
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTE--QKFMPD-----------C-----PHTIGVEFGTRIIEVHGEKIKLQIWDTA   72 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~   72 (218)
                      +..+..+|+|+|.+|+|||||+++|+.  ..+...           +     .+..+.......+.+.  .+.+.|||||
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP   83 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTP   83 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECc
Confidence            346789999999999999999999985  222100           0     0111111112222333  3678899999


Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS  135 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  135 (218)
                      |+..|......+++.+|++|+|+|+++..+++....|.. +..   .+.|+++++||+|+...
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence            999988888999999999999999999887777655543 333   47899999999998643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=3.4e-18  Score=132.96  Aligned_cols=134  Identities=16%  Similarity=0.131  Sum_probs=107.0

Q ss_pred             HHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHH
Q psy1169          30 CLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLS  107 (218)
Q Consensus        30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  107 (218)
                      +|+.++..+.|. ..+.+|.+..+. ..+..++   .+.+||+  ++++..++..+++++|++|+|||++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            678888888887 788888885543 2222222   6889999  8889999999999999999999999987 788889


Q ss_pred             HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC--CcEEEeccCCCCCHHHHHHHHHH
Q psy1169         108 SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND--LIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus       108 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      .|+..+..   .++|+++|+||+|+...+.+  +++.+++..++  ++++++||+++.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99887654   47999999999999755432  44666666655  88999999999999999977653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.70  E-value=2.2e-17  Score=132.67  Aligned_cols=85  Identities=21%  Similarity=0.185  Sum_probs=47.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEE--E-------------------EECC-eEEEEEEeeCcc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI--I-------------------EVHG-EKIKLQIWDTAG   73 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G   73 (218)
                      ++|+|+|.+|||||||+|+|++........+..+.+.....  +                   .+++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632222221121111111  1                   1122 257899999999


Q ss_pred             hhhh----hhhhH---hhhccCCEEEEEEECCCh
Q psy1169          74 QERF----RAVTR---SYYRGAAGALMVYDITRR  100 (218)
Q Consensus        74 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~  100 (218)
                      ....    ..+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7542    22233   346899999999999875

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.65  E-value=1.4e-17  Score=132.34  Aligned_cols=160  Identities=14%  Similarity=0.101  Sum_probs=95.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------Ccee--------------------ee--------------
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP------HTIG--------------------VE--------------   51 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~------~~~~--------------------~~--------------   51 (218)
                      ....++|+|+|.+|||||||+++|++..+.+...      ++..                    .+              
T Consensus        28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~  107 (353)
T 2x2e_A           28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  107 (353)
T ss_dssp             GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999999887642221      1100                    00              


Q ss_pred             ---------EEEEEEEEC-CeEEEEEEeeCcchh-------------hhhhhhHhhhccCCEE-EEEEECCChhhHHHHH
Q psy1169          52 ---------FGTRIIEVH-GEKIKLQIWDTAGQE-------------RFRAVTRSYYRGAAGA-LMVYDITRRSTYNHLS  107 (218)
Q Consensus        52 ---------~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~  107 (218)
                               .....+.+. .....+.||||||..             .+..+...|+...+.+ +++.|++....-....
T Consensus       108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~  187 (353)
T 2x2e_A          108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  187 (353)
T ss_dssp             HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred             hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence                     000001110 113578999999952             3455677777666655 5566766533222222


Q ss_pred             HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh--CC-CcEEEeccCCCCCHHHHHHHHHH
Q psy1169         108 SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE--ND-LIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus       108 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      .++.   .....+.|+++|+||+|+.................  .+ .+++++||+++.|++++++.+.+
T Consensus       188 ~i~~---~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          188 KVAK---EVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHH---HHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHH---HhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2333   33335789999999999975443211111100000  12 24678999999999999988876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.64  E-value=1.1e-16  Score=119.05  Aligned_cols=156  Identities=13%  Similarity=0.071  Sum_probs=94.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE------------EEEEEECC------------------e
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG------------TRIIEVHG------------------E   62 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~   62 (218)
                      ....+|+|+|.+|+|||||+++|+..............+..            .....++.                  .
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            34679999999999999999999864221111011110100            00111111                  2


Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHH
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE  142 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  142 (218)
                      ...+.+|||+|.-...   ..+....+.+++|+|+......  ...+...      .+.|+++++||+|+...+....++
T Consensus       108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~  176 (221)
T 2wsm_A          108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEK  176 (221)
T ss_dssp             TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred             CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHH
Confidence            3467899999841100   1111256889999998775421  1111111      146789999999985432234455


Q ss_pred             HHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         143 AKKFAEE--NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       143 ~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      +.+++..  ..++++++||+++.|++++++++.+.+...
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            5555544  357899999999999999999998877543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.64  E-value=7.1e-15  Score=116.12  Aligned_cols=146  Identities=17%  Similarity=0.128  Sum_probs=90.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhhhhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERFRA   79 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~~   79 (218)
                      .++|+++|.+|+|||||+++|.+........+..+.+.....+.+++.               ...+.+||+||...+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            478999999999999999999987643322222122221223334432               25789999999765431


Q ss_pred             ----h---hHhhhccCCEEEEEEECCCh----------hhHHHHHHHHHH------------------------------
Q psy1169          80 ----V---TRSYYRGAAGALMVYDITRR----------STYNHLSSWLTD------------------------------  112 (218)
Q Consensus        80 ----~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------  112 (218)
                          +   ...+++.+|++++|+|+++.          ..+.++..+..+                              
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence                2   22357899999999999862          122222111000                              


Q ss_pred             ----------Hhh-------------------h-cCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169         113 ----------TKN-------------------L-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       113 ----------~~~-------------------~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                                +..                   + .-...|+++++|+.|..-........++.++...+.+++++||+
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                      100                   0 11248999999999864222234567778888888899999976

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.63  E-value=5.8e-18  Score=126.40  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=87.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE------------EEEEEEC-CeEE----------------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG------------TRIIEVH-GEKI----------------   64 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~----------------   64 (218)
                      ..++|+|+|.+|||||||+++|+...+...+.++...++.            ...+.++ +..+                
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999977554433334443332            1122221 1111                


Q ss_pred             ---EEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH
Q psy1169          65 ---KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD  141 (218)
Q Consensus        65 ---~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~  141 (218)
                         .+.++|++|.-..   ...+-...+..+.++|.........  .....      .+.|.++|+||+|+...+....+
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence               2333333331000   0001112233345555422111000  00000      13567999999998654334556


Q ss_pred             HHHHHHHh--CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         142 EAKKFAEE--NDLIFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       142 ~~~~~~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      +..+++..  .+++++++||+++.|++++|+++.+.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            66666654  36789999999999999999999887754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=4e-15  Score=124.18  Aligned_cols=117  Identities=19%  Similarity=0.152  Sum_probs=84.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC------------------CC----CCCCCceeeeEEEEEEEECCeEEEEEEe
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------------------FM----PDCPHTIGVEFGTRIIEVHGEKIKLQIW   69 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~   69 (218)
                      ..+.=+|+|+|..++|||||..+|+...                  +.    .+..+.+++......+.+.  .+.++|+
T Consensus        28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlI  105 (548)
T 3vqt_A           28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--DRVVNLL  105 (548)
T ss_dssp             HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--TEEEEEE
T ss_pred             ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--CEEEEEE
Confidence            3466789999999999999999997311                  11    1222223333333333443  4678899


Q ss_pred             eCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      ||||+.+|..-....++-+|++|+|+|+.....-+...-|.. +..   .++|+++++||+|...
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSCC
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccchh
Confidence            999999999999999999999999999999877666655543 333   5799999999999754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.61  E-value=2e-15  Score=131.74  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=86.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC------------CCC----CCCC--ceeeeEEEEEEE------------ECC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------------FMP----DCPH--TIGVEFGTRIIE------------VHG   61 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~------------~~~----~~~~--~~~~~~~~~~~~------------~~~   61 (218)
                      .....+|+|+|..++|||||+++|+...            +..    +..+  ++........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4567899999999999999999998631            110    0111  211111122222            134


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      ..+.+.||||||+.+|...+..+++.+|++|+|+|+.+..+++....|.....    .++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            47899999999999999999999999999999999999988887766654332    478999999999985

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.60  E-value=9.3e-16  Score=121.93  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=70.5

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--  140 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--  140 (218)
                      .+.+.||||||....   ....+..+|++|+|+|....+.++.+...   +     .+.|+++|+||+|+........  
T Consensus       171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~  239 (355)
T 3p32_A          171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAA  239 (355)
T ss_dssp             TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHH
Confidence            367889999995432   23345889999999998776554332211   1     2468899999999853322111  


Q ss_pred             HHHHHHHH-------hCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         141 DEAKKFAE-------ENDLIFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       141 ~~~~~~~~-------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      .+......       .++.+++++||+++.|+++++++|.+.+.+
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            11111111       125789999999999999999999888765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.59  E-value=1.8e-15  Score=126.32  Aligned_cols=123  Identities=16%  Similarity=0.200  Sum_probs=83.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCceeeeEEEEE-------------------------------
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRI-------------------------------   56 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~-------------------------------   56 (218)
                      .....++|+|+|.+|+|||||+|+|++..+.   ....+++........                               
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            3456799999999999999999999988763   222222111000000                               


Q ss_pred             -----EEECCe-EEEEEEeeCcchhh-----------hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC
Q psy1169          57 -----IEVHGE-KIKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP  119 (218)
Q Consensus        57 -----~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  119 (218)
                           +.++.. ...+.||||||...           +......++..+|++|+|+|+++....+....|+..+..   .
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~  217 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H  217 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence                 000000 02578999999764           556777889999999999999886554555566655543   4


Q ss_pred             CCeEEEEeeCCCCCCCc
Q psy1169         120 NTVIFLIGNKMDLEGSR  136 (218)
Q Consensus       120 ~~piivv~nK~Dl~~~~  136 (218)
                      +.|+++|+||+|+....
T Consensus       218 ~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          218 EDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             GGGEEEEEECGGGSCHH
T ss_pred             CCCEEEEEECCCccCHH
Confidence            58899999999986543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.55  E-value=5.7e-14  Score=106.96  Aligned_cols=111  Identities=15%  Similarity=-0.012  Sum_probs=68.1

Q ss_pred             EEEEEeeCcchhhhhhhhH------hhhccCCEEEEEEECCChhhHHHHHHHHHH-HhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          64 IKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      +.+.||||||.........      ..+.. +++|+++|.........+...... .......+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5789999999876543221      23455 788889987654333222221111 111112368899999999986543


Q ss_pred             cccHHHHHHH----------------------------HHh--CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         137 DVRYDEAKKF----------------------------AEE--NDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       137 ~~~~~~~~~~----------------------------~~~--~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      ..  +++.++                            +..  ...+++++||+++.|++++++++.+.+.
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            21  111111                            122  2347899999999999999999987664

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.53  E-value=2.2e-14  Score=113.93  Aligned_cols=154  Identities=14%  Similarity=0.080  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-------------------eEEEEEEeeCcchhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-------------------EKIKLQIWDTAGQER   76 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~   76 (218)
                      ++|+++|.+|+|||||+++|.+........+..+.+.......+++                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999987542211111111111122222221                   235789999999765


Q ss_pred             hh-------hhhHhhhccCCEEEEEEECCCh----------hhHHHHHHHHH----------------------------
Q psy1169          77 FR-------AVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLT----------------------------  111 (218)
Q Consensus        77 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~----------------------------  111 (218)
                      ..       .....+++.+|++++|+|+++.          ..+.++..+..                            
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            32       1233457899999999999862          11111110000                            


Q ss_pred             -------H----Hhhh--------------------cCCCCeEEEEeeCCCC--CCC-ccccHHHHHHHHHhCCCcEEEe
Q psy1169         112 -------D----TKNL--------------------TNPNTVIFLIGNKMDL--EGS-RDVRYDEAKKFAEENDLIFVEA  157 (218)
Q Consensus       112 -------~----~~~~--------------------~~~~~piivv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~  157 (218)
                             .    +...                    .-...|+++++||.|.  .+. +......++.++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                   0    0000                    0113799999999973  222 1234567778888778899999


Q ss_pred             ccCCCCCHHHHH
Q psy1169         158 SAMTGENVEQAF  169 (218)
Q Consensus       158 S~~~~~~i~~~~  169 (218)
                      ||+.+.++.++.
T Consensus       242 SAk~E~el~eL~  253 (368)
T 2dby_A          242 SARLEAELAELS  253 (368)
T ss_dssp             CHHHHHHHHTSC
T ss_pred             echhHHHHHHhc
Confidence            998765555443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.53  E-value=6e-14  Score=111.12  Aligned_cols=103  Identities=9%  Similarity=0.001  Sum_probs=62.3

Q ss_pred             EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA  143 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  143 (218)
                      +.+.|+||+|....   .......+|++++|+|.+.....+.+..   .+     ...|.++|+||+|+....... ...
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence            46789999996422   2334678999999999987643322221   11     135778999999985321110 111


Q ss_pred             HHHHH----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         144 KKFAE----------ENDLIFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       144 ~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      ..+..          .+..+++.+||+++.|+++++++|.+.+.+
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            22211          124578999999999999999999887643

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.49  E-value=1.2e-12  Score=112.64  Aligned_cols=119  Identities=17%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhC--------CC------C----CCCCCceeeeEEEEEEEECC-----eEEEEE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQ--------KF------M----PDCPHTIGVEFGTRIIEVHG-----EKIKLQ   67 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~--------~~------~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~   67 (218)
                      +.++.-+|+|+|+.++|||||..+|+..        ..      .    .+..+.+++......+.+.+     ..+.++
T Consensus         9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN   88 (709)
T 4fn5_A            9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN   88 (709)
T ss_dssp             CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred             chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence            3467789999999999999999999721        11      0    12222233333333333432     368899


Q ss_pred             EeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      |+||||+.+|..-....++-+|++|+|+|+...-..+...-|.+...    .++|.++++||+|..
T Consensus        89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred             EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence            99999999999999999999999999999999876665555544333    479999999999974

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.48  E-value=5.8e-14  Score=110.99  Aligned_cols=104  Identities=10%  Similarity=-0.004  Sum_probs=65.9

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--  140 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--  140 (218)
                      .+.+.||||||......   .....+|++++|+|.+....++.+...   .     .+.|.++|+||+|+........  
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHH
Confidence            35788999999765433   246899999999999765432211110   0     1367899999999864322211  


Q ss_pred             HHHHHHHHh-------CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         141 DEAKKFAEE-------NDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       141 ~~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      ++.......       +..+++++||+++.|++++++.|.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            122222222       1456899999999999999999988764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.47  E-value=1.7e-14  Score=122.65  Aligned_cols=116  Identities=18%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh--CCCCCC---CCC-----------ceeeeEEEEEEEECCeEEEEEEeeCcchhhhh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE--QKFMPD---CPH-----------TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR   78 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~--~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (218)
                      .-+|+|+|..++|||||..+|+.  +.....   ...           ..+.+.....+.+....+.++|+||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            34789999999999999999973  111110   000           01122222222333455678899999999999


Q ss_pred             hhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      ......++-+|++|+|+|+...-.-+....|.. +..   .++|.++++||+|...
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~---~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK---MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH---HTCSCEECCEECCSSS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCeEEEEecccccc
Confidence            999999999999999999999766555444443 333   3688899999999743

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.47  E-value=1.4e-13  Score=117.80  Aligned_cols=159  Identities=13%  Similarity=0.095  Sum_probs=98.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceee---------------------------------------
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGV---------------------------------------   50 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~---------------------------------------   50 (218)
                      ..-...+|+|+|.+++|||||+|+|++..+.+ ....++..                                       
T Consensus        47 ~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~  126 (772)
T 3zvr_A           47 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  126 (772)
T ss_dssp             GGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence            34567899999999999999999999877622 21111100                                       


Q ss_pred             -----------eEEEEEEEECCeEEEEEEeeCcchhh-------------hhhhhHhhh-ccCCEEEEEEECCChhhHHH
Q psy1169          51 -----------EFGTRIIEVHGEKIKLQIWDTAGQER-------------FRAVTRSYY-RGAAGALMVYDITRRSTYNH  105 (218)
Q Consensus        51 -----------~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~  105 (218)
                                 +.....+..++ ..++.|+||||...             +..+...|+ ..+|++++|+|++.....++
T Consensus       127 ~~~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d  205 (772)
T 3zvr_A          127 RVTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD  205 (772)
T ss_dssp             HHHCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCH
T ss_pred             hhcCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhH
Confidence                       00001111111 12578999999432             333444555 57899999999987544333


Q ss_pred             HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC----C-CcEEEeccCCCCCHHHHHHHHHHH
Q psy1169         106 LSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN----D-LIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       106 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~-~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      ...++..+.   ..+.|+++|+||+|+......... ... ....    + .+++.+||+++.|++++++.+.+.
T Consensus       206 ~l~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          206 ALKIAKEVD---PQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHHHC---TTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHHH---hcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            323333333   357899999999999765433221 111 0011    1 246789999999999999888763

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.44  E-value=5.5e-12  Score=100.17  Aligned_cols=155  Identities=16%  Similarity=0.088  Sum_probs=96.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh-------hhhhHhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-------RAVTRSYY   85 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~   85 (218)
                      ....+|+++|.|+||||||+|+|.+........+..+.+.....+.+++.  .+.++|+||....       ....-..+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            44579999999999999999999986654444455566666667777664  5678899995421       11223456


Q ss_pred             ccCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC--------CccccHHHHHHHHHhCCCcEEE
Q psy1169          86 RGAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG--------SRDVRYDEAKKFAEENDLIFVE  156 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~  156 (218)
                      +.+|++++|+|++++.. ++.+...+..+.... ...|.++++||.|...        ......++.+.+...+.+..-+
T Consensus       148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             HhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            78999999999998743 233333232222211 3567788999999632        1234445666666555443333


Q ss_pred             eccCCCCCHHHHHH
Q psy1169         157 ASAMTGENVEQAFL  170 (218)
Q Consensus       157 ~S~~~~~~i~~~~~  170 (218)
                      +-...+...+++.+
T Consensus       227 v~~~~nv~eddl~d  240 (376)
T 4a9a_A          227 IAFRCDATVDDLID  240 (376)
T ss_dssp             EEECSCCCHHHHHH
T ss_pred             eeecccCCHHHHHH
Confidence            33334445555443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.38  E-value=3.1e-12  Score=100.81  Aligned_cols=104  Identities=10%  Similarity=0.026  Sum_probs=63.4

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHH
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDE  142 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  142 (218)
                      .+.+.|+||+|......   .....+|.+++++|.......+.+...+   .     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence            35788999999653221   2346899999999986543222111111   1     23457777999975433222222


Q ss_pred             HHHHHHh----------CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         143 AKKFAEE----------NDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       143 ~~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      .+.+...          +..+++.+|++++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2233221          1457899999999999999999887654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.38  E-value=1.2e-12  Score=101.62  Aligned_cols=96  Identities=16%  Similarity=0.141  Sum_probs=77.5

Q ss_pred             hhhhhhhhHhhhccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc-HHHHHHHHHhCC
Q psy1169          74 QERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR-YDEAKKFAEEND  151 (218)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~  151 (218)
                      ++++..+.+.++.++|++++|+|++++. +++.+..|+..+..   .++|+++|+||+|+...+.+. .++..++....+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            4566777778999999999999999986 88888889876654   579999999999996544322 345556666678


Q ss_pred             CcEEEeccCCCCCHHHHHHHH
Q psy1169         152 LIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus       152 ~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      ++++++||+++.|++++++.+
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHhhc
Confidence            899999999999999999654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.32  E-value=1.4e-12  Score=103.97  Aligned_cols=90  Identities=18%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERF   77 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   77 (218)
                      ...++|+++|.+|+|||||+++|.+..+.....+..+.+.....+.+++.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45689999999999999999999987654444444444444455555432               235899999997754


Q ss_pred             hh-------hhHhhhccCCEEEEEEECCChhh
Q psy1169          78 RA-------VTRSYYRGAAGALMVYDITRRST  102 (218)
Q Consensus        78 ~~-------~~~~~~~~~d~~i~v~d~~~~~s  102 (218)
                      .+       ....+++.+|++++|+|+.+..+
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            43       45567899999999999986544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.31  E-value=7.4e-11  Score=94.28  Aligned_cols=87  Identities=21%  Similarity=0.189  Sum_probs=61.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQER   76 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~   76 (218)
                      ....+|.++|++|||||||+|.|.+... .....+..+.+.....+.+++.               ...+.+||++|...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4457999999999999999999998765 4444444444444555555541               13678999999542


Q ss_pred             -------hhhhhHhhhccCCEEEEEEECCC
Q psy1169          77 -------FRAVTRSYYRGAAGALMVYDITR   99 (218)
Q Consensus        77 -------~~~~~~~~~~~~d~~i~v~d~~~   99 (218)
                             +.......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22234456789999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.27  E-value=6.1e-12  Score=90.98  Aligned_cols=103  Identities=4%  Similarity=-0.080  Sum_probs=67.2

Q ss_pred             cchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHH---HHHh-hhc-CCCCeEEEEeeCC-CCCCCccccHHHHHH
Q psy1169          72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL---TDTK-NLT-NPNTVIFLIGNKM-DLEGSRDVRYDEAKK  145 (218)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~-~~~-~~~~piivv~nK~-Dl~~~~~~~~~~~~~  145 (218)
                      +|+..++.+|+.|+.++|++|||+|.+|.+-++ ....+   ..+. ... -.++|++|++||. |+...  ....++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence            377889999999999999999999999975443 22222   1222 211 2578999999995 77433  34344333


Q ss_pred             HHH----hCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         146 FAE----ENDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       146 ~~~----~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      ...    ...+.+..|||.+|.|+.+.++||.+.+.
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            322    13455889999999999999999987653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.13  E-value=1.3e-10  Score=88.06  Aligned_cols=105  Identities=6%  Similarity=-0.046  Sum_probs=72.0

Q ss_pred             CcchhhhhhhhHhhhccCCEEEEEEECCChhhHH---HHHHHHHHHhhhc-CCCCeEEEEeeC-CCCCCCccccHHHHHH
Q psy1169          71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN---HLSSWLTDTKNLT-NPNTVIFLIGNK-MDLEGSRDVRYDEAKK  145 (218)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~piivv~nK-~Dl~~~~~~~~~~~~~  145 (218)
                      .+|++..+.+|+.|+.++|++|||+|++|.+-++   ++.++...+.... -.++|++|++|| .|+...  ....++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHH
Confidence            3567788999999999999999999999986543   2222212222211 257999999996 687533  33344333


Q ss_pred             HHH----hCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         146 FAE----ENDLIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       146 ~~~----~~~~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      ...    ...+.+..|||.+|+|+.+.++|+.+.+.
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            322    13455889999999999999999998763

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.93  E-value=6.1e-09  Score=83.86  Aligned_cols=141  Identities=16%  Similarity=0.195  Sum_probs=70.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeEEEEEEEEC--CeEEEEEEeeCcchhhh------------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVH--GEKIKLQIWDTAGQERF------------   77 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~------------   77 (218)
                      ..++++|+|++|+|||||++.|.+..+......  ..+.......+...  +-...+.++|++|....            
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            346799999999999999999988654321110  01111111222222  22346789999884321            


Q ss_pred             --hhhh----Hhhh---------cc--CCE-EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc
Q psy1169          78 --RAVT----RSYY---------RG--AAG-ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR  139 (218)
Q Consensus        78 --~~~~----~~~~---------~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~  139 (218)
                        ...+    ..+.         ..  +|+ ++|+.|....-+..++ .++..+    ..++|+++|.||+|.....++.
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L----~~~~~vI~Vi~KtD~Lt~~E~~  195 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL----DSKVNIIPIIAKADAISKSELT  195 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT----CSCSEEEEEESCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH----hhCCCEEEEEcchhccchHHHH
Confidence              1111    1111         11  233 5566666654333332 222222    2579999999999976543321


Q ss_pred             H--HHHHHHHHhCCCcEEEecc
Q psy1169         140 Y--DEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       140 ~--~~~~~~~~~~~~~~~~~S~  159 (218)
                      .  ..+.......+++++.+|.
T Consensus       196 ~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          196 KFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHHcCCcEEecCC
Confidence            1  1222223345666666664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.92  E-value=1.5e-10  Score=92.36  Aligned_cols=139  Identities=10%  Similarity=0.075  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC------CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh--------hh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ------KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VT   81 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~   81 (218)
                      .+|+++|.+|+|||||+|+|++.      .......+..+  .....+.++..   +.++||||......        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999875      22111111111  12223333322   67999999542211        11


Q ss_pred             Hhhh--ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169          82 RSYY--RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus        82 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                      ..++  +..+.++++++......+..+..    +......+.|+++++||.|..+..... .....+.+..+..+.+.++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCCc
Confidence            2222  67788999998854311111111    233334578999999999987654433 3333444556666666665


Q ss_pred             CCCCC
Q psy1169         160 MTGEN  164 (218)
Q Consensus       160 ~~~~~  164 (218)
                      .+..+
T Consensus       313 ~~~~~  317 (369)
T 3ec1_A          313 RYAAE  317 (369)
T ss_dssp             GGTTT
T ss_pred             hhhhh
Confidence            54333

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.89  E-value=6e-09  Score=85.85  Aligned_cols=152  Identities=15%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh------CCCC---CCC-CCce-----------eeeEEEEEEE-------------
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE------QKFM---PDC-PHTI-----------GVEFGTRIIE-------------   58 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~------~~~~---~~~-~~~~-----------~~~~~~~~~~-------------   58 (218)
                      .....|+|+|.+|+||||+++.|..      ....   ... .+..           +.........             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            4467899999999999999999972      2110   000 0000           0111000000             


Q ss_pred             ECCeEEEEEEeeCcchhhhh-hhh---Hhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeE-EEEeeCCC
Q psy1169          59 VHGEKIKLQIWDTAGQERFR-AVT---RSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI-FLIGNKMD  131 (218)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~nK~D  131 (218)
                      .....+.+.|+||||..... .+.   ...  .-.+|.+++|+|+.......   .....+..    ..|+ ++|+||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCc
Confidence            00033578899999965321 111   111  22789999999998764311   11222222    2564 88999999


Q ss_pred             CCCCccccHHHHHHHHHhCCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q psy1169         132 LEGSRDVRYDEAKKFAEENDLIF------------------VEASAMTGEN-VEQAFLETAKK  175 (218)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-i~~~~~~i~~~  175 (218)
                      .......    +.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            8633221    111222233332                  3478888888 88888777654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.88  E-value=7.5e-09  Score=82.43  Aligned_cols=97  Identities=23%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH----HHH
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK----FAE  148 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~  148 (218)
                      ..+.|..+...+.+.++++++|+|+.+..     ..|...+.... .+.|+++|+||+|+.... ...+...+    ++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45788899999999999999999999863     24444444443 378999999999996543 22233333    355


Q ss_pred             hCCC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         149 ENDL---IFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       149 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ..++   .++.+||+++.|++++++.+.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            5666   689999999999999998886543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.87  E-value=8.3e-11  Score=93.70  Aligned_cols=136  Identities=10%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-----CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----h----hH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-----DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----V----TR   82 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~----~~   82 (218)
                      .+|+++|.+|+|||||+|+|++.....     ......+.+.....+.+...   +.++||||......    +    ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999998753111     00111122222233333332   67999999643221    1    11


Q ss_pred             hh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169          83 SY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus        83 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                      .+  .+..+..+++++......+..+..    +......+.|+++++||.|..+..... .....+.+..+..+++.++
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~~-~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKLE-KADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEHH-HHHHHHHHHBTTTBCSSCH
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccHH-HHHHHHHHHhCCccCCCch
Confidence            11  356778888888743311111111    233334578999999999986554332 3333344445555444443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.76  E-value=2.6e-08  Score=76.00  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=69.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------CCceeeeEEEEEEEECCe--EEEEEEeeCcchhh---------
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-------PHTIGVEFGTRIIEVHGE--KIKLQIWDTAGQER---------   76 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~---------   76 (218)
                      .++++|+|++|+|||||++.|.+......-       ............+.....  ...+.++|++|...         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            478999999999999999999864322110       000000000111111211  23678899988321         


Q ss_pred             ---------hhhhhHh----------hhccCCEEEEEEECC-ChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          77 ---------FRAVTRS----------YYRGAAGALMVYDIT-RRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        77 ---------~~~~~~~----------~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                               +......          .+..+++.++++|.. .+-...+ ...+..+.   .. +++++|.+|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence                     0000000          122357888888854 2222222 22333333   23 8999999999986543


Q ss_pred             cccH--HHHHHHHHhCCCcEEE
Q psy1169         137 DVRY--DEAKKFAEENDLIFVE  156 (218)
Q Consensus       137 ~~~~--~~~~~~~~~~~~~~~~  156 (218)
                      +...  ..+.......++.+++
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            3221  2333344556666554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.74  E-value=1.8e-07  Score=75.36  Aligned_cols=155  Identities=12%  Similarity=0.163  Sum_probs=81.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCce-eeeE--EEEEEEECCeEEEEEEeeCcchhhhh----h-hhHhhhc
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI-GVEF--GTRIIEVHGEKIKLQIWDTAGQERFR----A-VTRSYYR   86 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~----~-~~~~~~~   86 (218)
                      ...++|+|++|+|||||+|.|.+......-.-.. +.+.  ...... ......+.+||++|.....    . +...-+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3479999999999999999998743221110000 1000  011111 1111257889999854211    1 1111233


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC-------C----CccccHHHHHHHHH----hC-
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE-------G----SRDVRYDEAKKFAE----EN-  150 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-------~----~~~~~~~~~~~~~~----~~-  150 (218)
                      ..+..++ ++..... -+.+ .+...+..   .+.|+++|.||.|+.       .    .+....+.++++..    .. 
T Consensus       148 ~~~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455555 7765211 1111 12222222   358999999999863       1    11111223344431    22 


Q ss_pred             --CCcEEEecc--CCCCCHHHHHHHHHHHH
Q psy1169         151 --DLIFVEASA--MTGENVEQAFLETAKKI  176 (218)
Q Consensus       151 --~~~~~~~S~--~~~~~i~~~~~~i~~~~  176 (218)
                        ...++.+|+  .++.|++++.+.+.+.+
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence              235788999  56667998888887665

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.73  E-value=2.1e-08  Score=79.90  Aligned_cols=97  Identities=22%  Similarity=0.264  Sum_probs=70.0

Q ss_pred             chhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHH----HHH
Q psy1169          73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKK----FAE  148 (218)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~  148 (218)
                      .++.|.+....+++.++++++|+|+.+..+     .|...+.... .+.|+++|+||.|+.... ...+...+    ++.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            467899999999999999999999999764     2333333333 368999999999996542 22233333    345


Q ss_pred             hCCC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         149 ENDL---IFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       149 ~~~~---~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ..+.   .++.+||+++.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5565   689999999999999998886543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.69  E-value=6.9e-08  Score=74.08  Aligned_cols=101  Identities=13%  Similarity=0.086  Sum_probs=69.8

Q ss_pred             EeeCcchh-hhhhhhHhhhccCCEEEEEEECCChhhHH--HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHH
Q psy1169          68 IWDTAGQE-RFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAK  144 (218)
Q Consensus        68 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~  144 (218)
                      |-..||+. .........+..+|++++|+|+.++.+..  .+..|+        .+.|.++|+||+|+....  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            33578876 44455667789999999999999987753  333332        468999999999996521  112233


Q ss_pred             HHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         145 KFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       145 ~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      ++....+.+++.+||.++.|++++++.+.+.+.+
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            4444557789999999999999999888777654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.41  E-value=1.2e-07  Score=71.95  Aligned_cols=57  Identities=19%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER   76 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (218)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            6999999999999999999997664321 1222222212222222   2567999999653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.37  E-value=3.7e-07  Score=69.99  Aligned_cols=59  Identities=24%  Similarity=0.384  Sum_probs=35.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ...++++++|.+|+|||||+|+|.+....... ...+.+.....+....   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            45689999999999999999999976532211 1111111111222222   56799999964

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.35  E-value=5.2e-07  Score=73.04  Aligned_cols=86  Identities=16%  Similarity=0.077  Sum_probs=50.6

Q ss_pred             EEEEEeeCcchhhh-----hhhhH-hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          64 IKLQIWDTAGQERF-----RAVTR-SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        64 ~~~~i~D~~G~~~~-----~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      +.+.|+||+|....     ..+.. .....+|.+++|+|+.....-.   .....+..   .-.+..+|+||.|..... 
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~---~~~i~gVIlTKlD~~~~g-  255 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKE---ATPIGSIIVTKLDGSAKG-  255 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH---SCTTEEEEEECCSSCSSH-
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHh---hCCCeEEEEECCCCcccc-
Confidence            67889999994321     11111 1233579999999998754322   22222222   123457899999975332 


Q ss_pred             ccHHHHHHHHHhCCCcEEEecc
Q psy1169         138 VRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                         ..+.......+.|+.+++.
T Consensus       256 ---G~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          256 ---GGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             ---HHHHHHHHTTCCCEEEEEC
T ss_pred             ---cHHHHHHHHHCCCEEEEEc
Confidence               2344455567888877775

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.20  E-value=8.1e-06  Score=66.22  Aligned_cols=84  Identities=18%  Similarity=0.073  Sum_probs=47.8

Q ss_pred             EEEEEEeeCcchhhhhh-hh---Hhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCC-e-EEEEeeCCCCCC
Q psy1169          63 KIKLQIWDTAGQERFRA-VT---RSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNT-V-IFLIGNKMDLEG  134 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iivv~nK~Dl~~  134 (218)
                      .+.+.|+||+|...... +.   ...  +..+|.+++|+|+.....   .......+.    ... | ..+|+||.|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence            45778999999653211 11   111  226899999999876532   222222222    234 5 789999999743


Q ss_pred             CccccHHHHHHHHHhCCCcEEEe
Q psy1169         135 SRDVRYDEAKKFAEENDLIFVEA  157 (218)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~  157 (218)
                      ..    ..+..+....+.++..+
T Consensus       253 ~~----g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 KG----GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             TT----HHHHHHHHHSSCCEEEE
T ss_pred             ch----HHHHHHHHHHCCCEEEe
Confidence            21    22334555566665555

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.19  E-value=1.8e-06  Score=72.47  Aligned_cols=65  Identities=20%  Similarity=0.127  Sum_probs=40.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeEEEEEE--EE-CCeEEEEEEeeCcchhh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT-IGVEFGTRII--EV-HGEKIKLQIWDTAGQER   76 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~   76 (218)
                      ....++|+|+|.+|+|||||+|+|++....-....+ .........+  .. ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            356789999999999999999999986532111111 1111112221  11 12334678999999653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.17  E-value=1e-06  Score=66.79  Aligned_cols=93  Identities=9%  Similarity=0.010  Sum_probs=60.8

Q ss_pred             Ccchhh-hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh
Q psy1169          71 TAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE  149 (218)
Q Consensus        71 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  149 (218)
                      .||+.. ........+..+|++|+|+|+.++.+....  .   +. ..  +.|.++|+||+|+.....  .+...++...
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS--RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            466652 233456678899999999999988664321  0   11 11  689999999999965321  1233344445


Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169         150 NDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus       150 ~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      .+.++ .+||.++.|++++++.+.+
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67788 9999999999988876644

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.14  E-value=5.1e-06  Score=70.38  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|||||||++.+.+..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.07  E-value=5.1e-06  Score=67.21  Aligned_cols=87  Identities=15%  Similarity=0.055  Sum_probs=50.0

Q ss_pred             EEEEEEeeCcchhh--h----hhhhHhh--hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          63 KIKLQIWDTAGQER--F----RAVTRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        63 ~~~~~i~D~~G~~~--~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      .+.+.|+||+|...  .    .......  .-..+.+++|+|+.......   .....+....   .+..+|+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---PIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---SSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---CCcEEEEecccccc
Confidence            45677999999533  1    1111111  12468999999998753322   2222222211   34678999999753


Q ss_pred             CccccHHHHHHHHHhCCCcEEEecc
Q psy1169         135 SRDVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                      .    ...+.......+.|+..++.
T Consensus       253 ~----~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          253 K----GGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             C----HHHHHHHHHHHTCEEEEEEC
T ss_pred             c----chHHHHHHHHHCCCEEEEEC
Confidence            2    23344455557888877776

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.94  E-value=5.1e-06  Score=64.25  Aligned_cols=87  Identities=14%  Similarity=0.100  Sum_probs=58.9

Q ss_pred             hhHhhhccCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHHHHHhCCCcEEE
Q psy1169          80 VTRSYYRGAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKKFAEENDLIFVE  156 (218)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  156 (218)
                      +.+..+.++|.+++|+|+.++.. ...+..++....   ..++|.++|+||+|+......  ..+...++....+.+++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            44456889999999999997644 444444443332   257889999999999765321  123333344445778999


Q ss_pred             eccCCCCCHHHHH
Q psy1169         157 ASAMTGENVEQAF  169 (218)
Q Consensus       157 ~S~~~~~~i~~~~  169 (218)
                      +|+.++.|+++++
T Consensus       156 ~sa~~~~g~~~L~  168 (307)
T 1t9h_A          156 TSSKDQDSLADII  168 (307)
T ss_dssp             CCHHHHTTCTTTG
T ss_pred             EecCCCCCHHHHH
Confidence            9999888877655

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.87  E-value=1.4e-06  Score=71.58  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=57.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--hhhhh--------H
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVT--------R   82 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~   82 (218)
                      ...+.|+++|.+|+||||+.++|...... ....+..+..........+......+||..|.+.  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999998653211 0111111110000000011112345789988732  22222        4


Q ss_pred             hhhccCCEEEEEEECCChhhHHHHHHHHHHHhh
Q psy1169          83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN  115 (218)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  115 (218)
                      .++...++.++|+|.++. +.+....|+..+..
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            566667888999999987 45555566555544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.86  E-value=6.6e-05  Score=57.87  Aligned_cols=91  Identities=18%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             EEEEEEeeCcchhh--hhh-hhH-----hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169          63 KIKLQIWDTAGQER--FRA-VTR-----SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE  133 (218)
Q Consensus        63 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~  133 (218)
                      .+.+.|+||||...  ... +..     .....+|.+++|+|.....   ........+..    ..+ ..+|+||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            35788999999765  221 111     1244789999999987532   22222222222    244 67889999974


Q ss_pred             CCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169         134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      ..    ...+..+....+.|+..++.  |.+++
T Consensus       253 ~~----~g~~~~~~~~~~~pi~~i~~--Ge~v~  279 (297)
T 1j8m_F          253 AK----GGGALSAVAATGATIKFIGT--GEKID  279 (297)
T ss_dssp             TT----HHHHHHHHHTTTCCEEEEEC--SSSTT
T ss_pred             cc----hHHHHHHHHHHCcCEEEEeC--CCChh
Confidence            32    23455566778888877763  44444

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.82  E-value=7.8e-05  Score=58.81  Aligned_cols=85  Identities=13%  Similarity=0.122  Sum_probs=55.7

Q ss_pred             hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc-HHHHHHHHHhCCCcEEEeccCCC
Q psy1169          84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR-YDEAKKFAEENDLIFVEASAMTG  162 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~S~~~~  162 (218)
                      ...++|.+++|.+.....+...+..++-....   .++|.++|+||+|+....... .+.........+++++.+|+.++
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            36789999988776533444555555433333   357889999999996543210 11222333456888999999999


Q ss_pred             CCHHHHHHH
Q psy1169         163 ENVEQAFLE  171 (218)
Q Consensus       163 ~~i~~~~~~  171 (218)
                      .|++++...
T Consensus       204 ~gl~~L~~~  212 (358)
T 2rcn_A          204 DGLKPLEEA  212 (358)
T ss_dssp             BTHHHHHHH
T ss_pred             cCHHHHHHh
Confidence            999887643

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.66  E-value=6.7e-05  Score=60.94  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .+..-|.|+|++++|||||+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            46778999999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.56  E-value=4.8e-05  Score=54.13  Aligned_cols=23  Identities=43%  Similarity=0.771  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998753

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.46  E-value=6.9e-05  Score=53.30  Aligned_cols=22  Identities=18%  Similarity=0.551  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999763

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.43  E-value=7.9e-05  Score=53.89  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .++|+|++|+|||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999975

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.40  E-value=5.9e-05  Score=55.87  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=16.0

Q ss_pred             CccccCCCCCCcceee----EEEEEcCCCCCHHHHHHHHH-hC
Q psy1169           1 MKTMSSSGQYSYSYIF----KYIIIGDMGVGKSCLLHQFT-EQ   38 (218)
Q Consensus         1 ~~~~~~~~~~~~~~~~----ki~v~G~~g~GKStli~~l~-~~   38 (218)
                      |.|+++....+-...+    -++|+|++|||||||++.|. +.
T Consensus         9 ~~~~~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A            9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             -------------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred             cchhhhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            5566666555544433    58999999999999999998 54

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.31  E-value=0.00013  Score=53.61  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      --++|+|++|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            358899999999999999997643

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.30  E-value=0.00018  Score=50.72  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.|+|+|++|+||||+++.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34699999999999999998864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.30  E-value=0.00014  Score=52.01  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |+|+||+|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.30  E-value=0.00014  Score=52.63  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.29  E-value=0.0053  Score=49.75  Aligned_cols=64  Identities=14%  Similarity=0.065  Sum_probs=36.8

Q ss_pred             EEEEEEeeCcchhhhhh-hhH-----hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCC
Q psy1169          63 KIKLQIWDTAGQERFRA-VTR-----SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLE  133 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~  133 (218)
                      .+.+.|+||||...... +..     .....++.+++|+|+.....   +......+..    ..+ ..+|+||.|..
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~----~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE----ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH----HSCCCCEEEECTTSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc----cCCCeEEEEecCCCC
Confidence            45788999999543211 111     12346889999999875432   2222222221    233 35789999974

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.28  E-value=0.00014  Score=52.83  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|||||||++.+.+.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999999764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.28  E-value=0.00014  Score=51.93  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -.++|+|++|+|||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.28  E-value=0.00016  Score=52.25  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .--|+|+|++|+|||||++.|...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhh
Confidence            345899999999999999999854

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.26  E-value=0.00016  Score=53.10  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998743

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.22  E-value=0.00019  Score=52.25  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -|+|+|++|||||||++.|...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.20  E-value=0.00021  Score=49.71  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999997654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.16  E-value=0.00023  Score=50.13  Aligned_cols=20  Identities=30%  Similarity=0.502  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy1169          17 KYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~   36 (218)
                      -++++|++|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.14  E-value=0.00024  Score=51.66  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +....|+|+|++|+|||||++.|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.14  E-value=0.00023  Score=52.94  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999886643

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.12  E-value=0.00028  Score=51.15  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .-|+|+|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.10  E-value=0.00029  Score=50.28  Aligned_cols=21  Identities=43%  Similarity=0.662  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -++|+|++|+||||+++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.08  E-value=0.00028  Score=52.09  Aligned_cols=22  Identities=41%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++++|++|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998664

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.06  E-value=0.00035  Score=49.02  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|+|++|+||||+.+.|.+
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.06  E-value=0.00034  Score=52.20  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999997653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.05  E-value=0.00034  Score=50.54  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999997654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.03  E-value=0.00037  Score=48.75  Aligned_cols=21  Identities=19%  Similarity=0.127  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.03  E-value=0.00043  Score=50.29  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...|+|+|++|+|||||++.|.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.03  E-value=0.00036  Score=48.83  Aligned_cols=20  Identities=30%  Similarity=0.303  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQF   35 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l   35 (218)
                      +-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.02  E-value=0.00039  Score=50.22  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .--|+|+|++|+||||+++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.02  E-value=0.00036  Score=51.07  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999998664

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.01  E-value=0.00035  Score=53.17  Aligned_cols=23  Identities=39%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++|+|++|||||||++.+.+..
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999987643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.01  E-value=0.00035  Score=52.79  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.01  E-value=0.0005  Score=48.43  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-|+|.|++|+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999976

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.01  E-value=0.00045  Score=49.82  Aligned_cols=28  Identities=18%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ......+.|+|.|++|+||||+.+.|..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445567899999999999999998854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.00  E-value=0.0004  Score=50.64  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999843

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.99  E-value=0.00038  Score=49.96  Aligned_cols=21  Identities=38%  Similarity=0.700  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            478999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.99  E-value=0.00038  Score=51.80  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.99  E-value=0.00043  Score=50.54  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999853

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.98  E-value=0.00059  Score=49.50  Aligned_cols=24  Identities=21%  Similarity=-0.032  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.98  E-value=0.00047  Score=51.47  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~   36 (218)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999997

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.98  E-value=0.00048  Score=50.10  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +.|+|+|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.98  E-value=0.0004  Score=54.77  Aligned_cols=24  Identities=38%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKF   40 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~   40 (218)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999987543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.97  E-value=0.0004  Score=52.35  Aligned_cols=23  Identities=39%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999996643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.96  E-value=0.0004  Score=52.64  Aligned_cols=23  Identities=43%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37899999999999999997643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.96  E-value=0.00043  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.96  E-value=0.00043  Score=52.37  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999998664

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.95  E-value=0.00043  Score=51.86  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998664

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.95  E-value=0.00051  Score=48.39  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|.|++||||||+.+.|..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.95  E-value=0.00043  Score=51.60  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++++|++|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.94  E-value=0.0005  Score=51.33  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999987643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.94  E-value=0.00049  Score=51.65  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999774

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.93  E-value=0.00046  Score=51.75  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++++|++|+|||||++.+.+.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999998664

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.93  E-value=0.00046  Score=51.96  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|+|||||++.+.+.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.93  E-value=0.00051  Score=51.90  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .++|+|++|+|||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.93  E-value=0.00037  Score=50.79  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++++|++|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.93  E-value=0.00055  Score=48.40  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ..-++|+|++|+|||||+++|+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            346899999999999999999753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.92  E-value=0.00051  Score=52.06  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999774

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.91  E-value=0.0023  Score=43.45  Aligned_cols=22  Identities=14%  Similarity=0.230  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|++.|++|+|||++.+.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            4599999999999999988844

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.91  E-value=0.00062  Score=49.09  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.|+++|++|+||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.90  E-value=0.00055  Score=49.38  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|+|++||||||+++.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.90  E-value=0.0006  Score=49.24  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999976

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.89  E-value=0.00059  Score=52.67  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999998753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.89  E-value=0.0005  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999999764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.89  E-value=0.00052  Score=52.37  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999987643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.89  E-value=0.00048  Score=48.73  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.++++|++|+|||||++.+.+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.89  E-value=0.00064  Score=48.38  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ....|+++|++|+||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999988653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.88  E-value=0.00052  Score=52.12  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.87  E-value=0.00061  Score=49.15  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .--|+|+|++|+||||+++.|.+
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.87  E-value=0.00067  Score=48.81  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.86  E-value=0.00056  Score=51.40  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++++|++|+|||||++.+.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999987643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.85  E-value=0.00078  Score=47.94  Aligned_cols=21  Identities=43%  Similarity=0.518  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|.|++|+||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.84  E-value=0.00059  Score=51.67  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999998764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.84  E-value=0.0007  Score=49.36  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.82  E-value=0.00095  Score=47.57  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...|+|.|++|+||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.82  E-value=0.00078  Score=49.43  Aligned_cols=22  Identities=32%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|+|++|+||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.82  E-value=0.00068  Score=52.57  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....-|+|+|++|||||||++.|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4557899999999999999998865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.81  E-value=0.00087  Score=48.48  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999965

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.81  E-value=0.017  Score=41.80  Aligned_cols=86  Identities=15%  Similarity=0.080  Sum_probs=52.6

Q ss_pred             EEEEEEeeCcch-hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHH
Q psy1169          63 KIKLQIWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYD  141 (218)
Q Consensus        63 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~  141 (218)
                      .+.+.|+|+|+. ...  .....+..+|.+|++...+. .+...+..+++.+....  +.++.+|+|+.|.....  ...
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHH
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHH
Confidence            357889999986 432  23456678999988887654 44555555555555432  45688999999864301  124


Q ss_pred             HHHHHHHhCCCcEE
Q psy1169         142 EAKKFAEENDLIFV  155 (218)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (218)
                      ++.+.....+.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            44455554555433

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.81  E-value=0.00069  Score=49.72  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.81  E-value=0.00092  Score=49.85  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..++|+|.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999853

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.79  E-value=0.00096  Score=47.32  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998853

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.79  E-value=0.0024  Score=46.19  Aligned_cols=20  Identities=20%  Similarity=0.368  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      +++.|++|+|||++++.+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.79  E-value=0.00085  Score=49.10  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+.|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.79  E-value=0.00087  Score=47.65  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999854

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.78  E-value=0.00079  Score=50.89  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++++|++|+|||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999997643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.77  E-value=0.00088  Score=51.68  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.|.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999997654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.77  E-value=0.0011  Score=47.88  Aligned_cols=27  Identities=26%  Similarity=0.239  Sum_probs=22.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ......|+|+|++|+||||+++.|...
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            344567999999999999999998653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.77  E-value=0.00075  Score=52.08  Aligned_cols=20  Identities=45%  Similarity=0.710  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy1169          17 KYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~   36 (218)
                      -++++|++|+|||||+|.|.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.77  E-value=0.00087  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+++|++|+||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999854

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.75  E-value=0.00083  Score=48.75  Aligned_cols=24  Identities=21%  Similarity=0.101  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.74  E-value=0.0012  Score=47.03  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|.|++|+||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.74  E-value=0.00085  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...|+|+|++|+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999998853

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.73  E-value=0.0011  Score=50.66  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....-|+|.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999965

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.72  E-value=0.00085  Score=52.94  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++++|++|||||||++.+.+-.
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            6899999999999999997754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.71  E-value=0.00046  Score=48.67  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .+.|+|++|+|||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.71  E-value=0.00078  Score=53.40  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.70  E-value=0.00024  Score=54.87  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -.++|+|++|||||||+|.|.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            37899999999999999999754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.69  E-value=0.00086  Score=51.43  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|+.|+|||||++.+.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998664

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.68  E-value=0.0011  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998854

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.68  E-value=0.001  Score=49.63  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..-|.|+|+.|+|||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.68  E-value=0.001  Score=49.12  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ....-|+|.|+.|+||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45567999999999999999998764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.66  E-value=0.0014  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.66  E-value=0.001  Score=52.52  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++|+|++|||||||++.+.+-.
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHhcCC
Confidence            6899999999999999987654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.66  E-value=0.0014  Score=47.45  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|.|++||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.65  E-value=0.001  Score=52.40  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999997654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.65  E-value=0.0014  Score=47.14  Aligned_cols=25  Identities=24%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ....|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3467999999999999999999764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.64  E-value=0.0013  Score=46.25  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-+.|+|++|+|||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.64  E-value=0.00096  Score=46.94  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      +|+|+|++|+||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999998854

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.64  E-value=0.0012  Score=48.59  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.64  E-value=0.0011  Score=48.74  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|+|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998853

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.64  E-value=0.0012  Score=49.36  Aligned_cols=27  Identities=19%  Similarity=0.180  Sum_probs=21.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .....+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344557899999999999999998854

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.63  E-value=0.00067  Score=52.43  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999988653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.63  E-value=0.0011  Score=52.34  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            36899999999999999997653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.62  E-value=0.0012  Score=52.29  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999997754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.61  E-value=0.0012  Score=52.57  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++++|++|+|||||++.+.+-.
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCchHHHHHHHHHcCC
Confidence            6899999999999999997754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.61  E-value=0.0097  Score=46.61  Aligned_cols=20  Identities=25%  Similarity=0.396  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.60  E-value=0.0012  Score=52.23  Aligned_cols=21  Identities=29%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .++|+|++|+|||||++.+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.60  E-value=0.0012  Score=50.95  Aligned_cols=23  Identities=22%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .--++|+|++||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34788999999999999999863

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.60  E-value=0.0019  Score=46.45  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=21.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .....|+|.|++|+||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998863

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.59  E-value=0.00085  Score=46.12  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.58  E-value=0.0011  Score=48.67  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.58  E-value=0.0019  Score=49.51  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=21.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....-|+|+|++|+|||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.57  E-value=0.0013  Score=52.24  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36899999999999999997653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.57  E-value=0.0013  Score=52.33  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999997754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.57  E-value=0.0013  Score=50.01  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999763

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.56  E-value=0.0022  Score=49.88  Aligned_cols=26  Identities=23%  Similarity=0.209  Sum_probs=22.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....+-|.|+|++|||||||++.|..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999998854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.55  E-value=0.0014  Score=50.63  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .--++++|++|+||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.55  E-value=0.0016  Score=46.82  Aligned_cols=24  Identities=17%  Similarity=0.011  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ...|+|.|++||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999998654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.54  E-value=0.0015  Score=47.80  Aligned_cols=20  Identities=20%  Similarity=0.473  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|+|+|||||+|...+|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998854

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.53  E-value=0.0016  Score=47.57  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+.|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998854

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.53  E-value=0.0015  Score=48.99  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=22.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ......|+++|++|+||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.53  E-value=0.0015  Score=49.01  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|+|++|+|||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999853

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.52  E-value=0.0014  Score=50.68  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....-|+|+|++|+|||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999999876

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.52  E-value=0.0015  Score=48.85  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.51  E-value=0.0015  Score=50.96  Aligned_cols=90  Identities=13%  Similarity=0.106  Sum_probs=48.1

Q ss_pred             EEEEeeCcchhhhhh-----hhH-hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc
Q psy1169          65 KLQIWDTAGQERFRA-----VTR-SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV  138 (218)
Q Consensus        65 ~~~i~D~~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  138 (218)
                      .+.++|++|......     +.. .-.-..|-.++++|.....   ++......+....   ..-++++||.|....   
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a~---  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADAR---  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCSC---
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCccc---
Confidence            455789999532111     110 0112468889999976653   2223333333211   123788899996322   


Q ss_pred             cHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169         139 RYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                       ...+.......+.|+..++  +|.+++
T Consensus       284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          284 -GGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             -CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             -hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence             1334455666788877777  444443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.50  E-value=0.0019  Score=46.54  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=21.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....-|+|+|++|+|||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.49  E-value=0.0017  Score=45.81  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.++|.|++|+|||++++.+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.49  E-value=0.0014  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999999764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.48  E-value=0.0019  Score=46.03  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.47  E-value=0.0017  Score=46.32  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|.|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.46  E-value=0.0016  Score=51.83  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .++|+|++|+||||+++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.46  E-value=0.0015  Score=46.70  Aligned_cols=23  Identities=30%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...|+|.|++|+||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998854

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.45  E-value=0.001  Score=52.30  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            37899999999999999997654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.45  E-value=0.0028  Score=44.97  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...|+|+|.+|+||||+++.|..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998854

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.45  E-value=0.0018  Score=45.75  Aligned_cols=21  Identities=29%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.44  E-value=0.00066  Score=49.29  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.43  E-value=0.0017  Score=51.94  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999998764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.43  E-value=0.0013  Score=51.05  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      --++|+|+.|||||||++.+++..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            457899999999999999998753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.43  E-value=0.0019  Score=48.39  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~   36 (218)
                      ..|+|+|++|+||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999886

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.43  E-value=0.0021  Score=47.48  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...|+|+|++|+||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.42  E-value=0.0015  Score=51.14  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999987643

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.41  E-value=0.0019  Score=45.10  Aligned_cols=21  Identities=14%  Similarity=0.404  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.39  E-value=0.002  Score=47.16  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.39  E-value=0.0019  Score=48.65  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.38  E-value=0.0019  Score=52.12  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.36  E-value=0.002  Score=50.34  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .++++|++|+|||||++.+.+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.36  E-value=0.0023  Score=45.09  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...|+++|.+|+||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.36  E-value=0.0022  Score=48.76  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.35  E-value=0.0021  Score=45.47  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|+|++|+||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998854

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.33  E-value=0.0022  Score=50.65  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .--++++|++|+||||++..|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.30  E-value=0.001  Score=52.44  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999997754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.29  E-value=0.0029  Score=46.14  Aligned_cols=23  Identities=26%  Similarity=0.567  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.28  E-value=0.0026  Score=50.06  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++.++|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.27  E-value=0.0016  Score=45.98  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=15.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999863

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.26  E-value=0.0023  Score=53.00  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++||||||+++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999997644

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.25  E-value=0.0025  Score=52.31  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .--++|+|++|+|||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999999864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.22  E-value=0.0091  Score=48.45  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=20.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      ....=|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            466778899999999999999664

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.22  E-value=0.0026  Score=48.71  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.22  E-value=0.0032  Score=43.84  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.21  E-value=0.0029  Score=47.40  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.|+|+|++|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.0026  Score=52.01  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -.++|+|++|+|||||++.|.+.
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999998753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.20  E-value=0.0024  Score=44.92  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.++|.|++|+|||++++.+..
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999998864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.20  E-value=0.004  Score=45.75  Aligned_cols=35  Identities=26%  Similarity=0.198  Sum_probs=20.9

Q ss_pred             CccccCCCCCCcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169           1 MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus         1 ~~~~~~~~~~~~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      |.|+.+.+...  ...-|+|.|..|+||||+++.|..
T Consensus         9 ~~~~~~~~~~~--~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A            9 MGTLEAQTQGP--GSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ----------C--CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccccccccCC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence            45666665544  356799999999999999998853

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.20  E-value=0.0033  Score=43.13  Aligned_cols=19  Identities=47%  Similarity=0.707  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999975

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.19  E-value=0.0032  Score=49.85  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHH
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQF   35 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l   35 (218)
                      ....+||+|+|.+|+|||||++.+
T Consensus        30 ~~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           30 SARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             hcCccEEEEECCCCCcHHHHHHHH
Confidence            356799999999999999999886

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.19  E-value=0.0031  Score=45.81  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..-|+|+|++|+||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998854

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.19  E-value=0.0031  Score=48.07  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...+.|+|.|++||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999863

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.19  E-value=0.003  Score=47.29  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.++++|++|+|||+|++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3599999999999999999865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.18  E-value=0.0032  Score=46.63  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..+.|+|.|++|+||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998853

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.17  E-value=0.0032  Score=45.77  Aligned_cols=21  Identities=24%  Similarity=0.161  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999987

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.17  E-value=0.0031  Score=46.31  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.++|.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.16  E-value=0.0032  Score=46.46  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999999874

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.16  E-value=0.078  Score=40.89  Aligned_cols=21  Identities=14%  Similarity=0.252  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      +++-|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999999653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.15  E-value=0.0045  Score=45.66  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...-|+|.|++|+||||+++.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999999865

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.14  E-value=0.002  Score=48.48  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ......|+|.|..|+||||+++.|..
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998854

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.14  E-value=0.0034  Score=45.11  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.04  E-value=0.0046  Score=47.38  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-|+|.|++|+||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.01  E-value=0.0038  Score=51.17  Aligned_cols=21  Identities=29%  Similarity=0.416  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -++|+|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.00  E-value=0.0034  Score=46.33  Aligned_cols=24  Identities=25%  Similarity=0.158  Sum_probs=17.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...-|+|.|++|+||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999998853

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.00  E-value=0.0042  Score=50.44  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.99  E-value=0.0043  Score=51.78  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++++|++|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998743

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.017  Score=42.34  Aligned_cols=28  Identities=7%  Similarity=-0.121  Sum_probs=22.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      +++.+-|++-|+++.|||+|++++.+..
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhccc
Confidence            3555666666999999999999997763

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.96  E-value=0.0042  Score=49.37  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      --++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.94  E-value=0.0051  Score=41.81  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      ..|++.|++|+|||++.+.+....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999987643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.94  E-value=0.0039  Score=52.01  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999987643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.93  E-value=0.022  Score=44.25  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -.+++.|++|+|||++++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.93  E-value=0.0056  Score=43.91  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-+.|.+.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998854

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.93  E-value=0.0047  Score=45.19  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -++|.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999998864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.91  E-value=0.004  Score=45.06  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+++.|++|+|||+++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.0063  Score=51.51  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.|.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999997643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.87  E-value=0.0045  Score=52.17  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999998664

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.86  E-value=0.0058  Score=45.18  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=21.6

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .......|+|+|++|+||||+.+.|..
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345556899999999999999998864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.85  E-value=0.005  Score=48.77  Aligned_cols=19  Identities=32%  Similarity=0.576  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5599999999999999986

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.82  E-value=0.0068  Score=46.72  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-|+|+|++|+|||+|...|..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            3588999999999999999964

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.82  E-value=0.0052  Score=46.97  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.+++.|++|+|||++++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34789999999999999999975

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.82  E-value=0.0052  Score=46.64  Aligned_cols=21  Identities=29%  Similarity=0.313  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999998874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.80  E-value=0.0052  Score=51.79  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987643

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.79  E-value=0.0058  Score=45.64  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.+++.|++|+|||++++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.76  E-value=0.0058  Score=46.37  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            345999999999999999999653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.75  E-value=0.0055  Score=49.43  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...-|+|+|++|+||||+.+.|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.75  E-value=0.0073  Score=46.29  Aligned_cols=25  Identities=24%  Similarity=0.130  Sum_probs=20.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +...-+++.|++|+|||+|++.+..
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3345678889999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.72  E-value=0.0061  Score=46.85  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -.+++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999999753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.72  E-value=0.0061  Score=46.83  Aligned_cols=86  Identities=15%  Similarity=0.100  Sum_probs=47.2

Q ss_pred             EEEEEEeeCcchhhhhh-hh---Hhhhc--cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          63 KIKLQIWDTAGQERFRA-VT---RSYYR--GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      .+.+.|+||+|...... ..   ...+.  ..+.+++|+|.+..  .+.+..+...+..   -+ ..-+++||.|.....
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~~  255 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTSL  255 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSCC
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccch
Confidence            34678999999654321 11   12222  35678889987653  2334333322221   11 234667999975322


Q ss_pred             cccHHHHHHHHHhCCCcEEEec
Q psy1169         137 DVRYDEAKKFAEENDLIFVEAS  158 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~S  158 (218)
                          ..+...+...++|+..+.
T Consensus       256 ----g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          256 ----GSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             ----HHHHHHHHTCSCCCSEEC
T ss_pred             ----hHHHHHHHHHCcCEEEEE
Confidence                355566667788765544

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.71  E-value=0.0061  Score=47.28  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.+++.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999999865

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.71  E-value=0.033  Score=39.83  Aligned_cols=84  Identities=7%  Similarity=-0.043  Sum_probs=53.8

Q ss_pred             EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCCCccccHH
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT--NPNTVIFLIGNKMDLEGSRDVRYD  141 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~  141 (218)
                      +.+.|+|+|+..  .......+..+|.+|++...+...  ..+..+++.+....  ..+.++.+|+|+.|...  . ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HHH
Confidence            678899999865  334455677799999999876655  55556565555443  24567899999998421  1 223


Q ss_pred             HHHHHHHhCCCcE
Q psy1169         142 EAKKFAEENDLIF  154 (218)
Q Consensus       142 ~~~~~~~~~~~~~  154 (218)
                      +..++....+.++
T Consensus       149 ~~~~~l~~~~~~v  161 (206)
T 4dzz_A          149 VLKESIKDTGVKA  161 (206)
T ss_dssp             HHHHHHHHHTCCB
T ss_pred             HHHHHHHHcCCce
Confidence            4444444444443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.70  E-value=0.0075  Score=44.46  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-++..|+|++||||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            457899999999999999998853

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.66  E-value=0.0084  Score=46.02  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      .....+++.|++|+|||++++.+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999998664

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.64  E-value=0.0072  Score=50.42  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.64  E-value=0.0065  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.63  E-value=0.0089  Score=50.59  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++++|++|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999987643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.63  E-value=0.0062  Score=50.81  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .++|+|++|+|||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999997643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.62  E-value=0.0076  Score=43.30  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|.|.|++|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.61  E-value=0.0078  Score=43.31  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      ..|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999997654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.61  E-value=0.0072  Score=44.62  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.61  E-value=0.0069  Score=47.76  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      --++|.|++|+|||||++.+..
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.56  E-value=0.008  Score=46.40  Aligned_cols=87  Identities=22%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             EEEEEeeCcchhhhhh-----h--hHhhh-----ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169          64 IKLQIWDTAGQERFRA-----V--TRSYY-----RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD  131 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~-----~--~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D  131 (218)
                      +.+.|+|+||......     +  ....+     ...+.+++|+|....  .+.+.. ...+....  + ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            4578999999522111     1  11111     247888999998743  122221 12222211  1 2356789999


Q ss_pred             CCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169         132 LEGSRDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      ....-    ..+.......++|+.++..-
T Consensus       261 ~~~~g----G~~l~~~~~~~~Pi~~i~~G  285 (306)
T 1vma_A          261 GTAKG----GITLAIARELGIPIKFIGVG  285 (306)
T ss_dssp             GCSCT----THHHHHHHHHCCCEEEEECS
T ss_pred             Cccch----HHHHHHHHHHCCCEEEEeCC
Confidence            63221    23556666778887776553

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.55  E-value=0.0054  Score=51.90  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++++|++|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999988653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.54  E-value=0.012  Score=45.16  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.++++|++|+|||++++.+..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHH
Confidence            34799999999999999998865

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.53  E-value=0.0083  Score=46.57  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..|+|+|++|+|||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.52  E-value=0.0084  Score=43.34  Aligned_cols=19  Identities=47%  Similarity=0.707  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999999874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.51  E-value=0.0079  Score=47.35  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -+.|+|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.48  E-value=0.008  Score=50.85  Aligned_cols=22  Identities=23%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++|+|++|+|||||++.+.+..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.47  E-value=0.0044  Score=52.18  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++++|++|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5889999999999999987553

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.47  E-value=0.0089  Score=45.76  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.+++.|++|+|||++++.+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.47  E-value=0.0086  Score=47.39  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.44  E-value=0.0086  Score=46.79  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.44  E-value=0.0091  Score=46.68  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.44  E-value=0.014  Score=44.06  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ...-.+++.|++|+|||++++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34467999999999999999998653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.42  E-value=0.011  Score=46.37  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~   36 (218)
                      ..+|+++|++|+||||+.+.|.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            4589999999999999998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.35  E-value=0.0061  Score=51.43  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.34  E-value=0.011  Score=45.60  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -|+|+||+|+|||||...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999999653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.33  E-value=0.011  Score=46.13  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|+|+.|+|||||...|..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.33  E-value=0.01  Score=46.18  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -.|++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.29  E-value=0.014  Score=40.94  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      .-|++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.23  E-value=0.013  Score=52.12  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKF   40 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~   40 (218)
                      .++|+|++|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999987544

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.22  E-value=0.013  Score=41.51  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      ++|+|.+|+|||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.20  E-value=0.012  Score=46.01  Aligned_cols=20  Identities=25%  Similarity=0.492  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      +++.|++|+|||++++.+..
T Consensus        61 ~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.20  E-value=0.01  Score=46.85  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.++|.|++|+|||++++.+..
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.19  E-value=0.015  Score=43.07  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-|+|.|..|+||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999999865

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.16  E-value=0.011  Score=49.18  Aligned_cols=19  Identities=32%  Similarity=0.525  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      ++|+|++|+|||||++.|+
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.16  E-value=0.013  Score=45.63  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999999754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.13  E-value=0.012  Score=45.57  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.+++.|++|+|||+|++.+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999965

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.013  Score=47.36  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      --|++.||||+|||+|++.+.+
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999965

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.10  E-value=0.012  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.+++.|++|+|||++++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.10  E-value=0.0073  Score=50.47  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ....|+|+|++|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3457999999999999999998653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.09  E-value=0.0059  Score=45.92  Aligned_cols=20  Identities=25%  Similarity=0.511  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      +++.|++|+|||+|++.+..
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999999865

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.07  E-value=0.015  Score=44.84  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.06  E-value=0.014  Score=47.27  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.|++.||||+|||.|++.+.+
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999999965

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.06  E-value=0.015  Score=42.37  Aligned_cols=23  Identities=26%  Similarity=0.210  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..-|+|.|++|+||||+++.|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998853

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.04  E-value=0.014  Score=45.66  Aligned_cols=18  Identities=50%  Similarity=0.772  Sum_probs=16.5

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q psy1169          19 IIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        19 ~v~G~~g~GKStli~~l~   36 (218)
                      +|+|+.|+|||||++.+.
T Consensus        27 ~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           27 LIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            699999999999999874

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.03  E-value=0.014  Score=45.53  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++|.|++|+|||+|++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.01  E-value=0.014  Score=47.48  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.+++.|++|+|||+|++.+.+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.01  E-value=0.014  Score=47.86  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.++++|++|+|||++++.+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            3679999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-54
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-53
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-51
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	8e-51
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-50
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-50
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	9e-50
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-47
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-47
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-47
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-47
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-45
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-40
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-40
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	8e-39
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-35
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-35
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	7e-34
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-33
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-33
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	7e-33
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-32
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-32
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-32
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	6e-32
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-31
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-31
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	9e-31
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-30
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	6e-30
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-29
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-28
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-28
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-28
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-27
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-27
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	9e-27
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-26
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-26
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-25
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	6e-24
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-23
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-23
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-23
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-23
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-20
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-20
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-20
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	7e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	9e-18
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-16
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-16
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	5e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	6e-09
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-05
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	8e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	9e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	3e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	5e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	5e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	7e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	9e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  170 bits (431), Expect = 1e-54
 Identities = 71/171 (41%), Positives = 109/171 (63%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +Y Y+FK ++IGD GVGK+C+L +F+E  F      TIG++F  R IE+ G++IKLQIWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQERFR +T +YYRGA G ++VYDIT   +++++ +W+ + +   + +    ++GNK 
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           D+   R V  +  +K A +  + F+E SA    NVE AF   A+ I   + 
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 172

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  166 bits (420), Expect = 4e-53
 Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           I K ++IGD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
           ERFR +T +YYRGA G ++VYDIT   T+ ++  W        N    + L+GNK D+E 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 120

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
           +R V  D+ +  A+E  + F+E+SA   +NV + F   AK I + I
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (409), Expect = 2e-51
 Identities = 147/166 (88%), Positives = 154/166 (92%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD +NLTNPNTVI LIGNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
           LE  RDV Y+EAK+FAEEN L+F+EASA TGENVE AFLE AKKIY
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (406), Expect = 8e-51
 Identities = 69/169 (40%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIW 69
            Y   FK +++GD GVGK+CLL +F +  F+      T+G++F  ++++V G K+KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNK 129
           DTAGQERFR+VT +YYR A   L++YD+T +++++++ +WLT+       +  + L+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 130 MDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           +D    R V+ ++ +K A+E  L F+E SA TG NV+ AF   AK++ +
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  160 bits (404), Expect = 3e-50
 Identities = 80/177 (45%), Positives = 117/177 (66%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           Y Y+FK ++IG+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWDT
Sbjct: 3   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQERFR +T SYYRG+ G ++VYD+T + ++N +  WL +         +  L+GNK D
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNAN 188
           L+  R V YD AK+FA+ N + F+E SA+   NVE AFL  A++I +++    LN  
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (400), Expect = 6e-50
 Identities = 108/174 (62%), Positives = 141/174 (81%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +Y ++FK+++IG+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWD
Sbjct: 1   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           TAGQERFR+VTRSYYRGAAGAL+VYDIT R TYN L++WLTD + L + N VI L GNK 
Sbjct: 61  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 120

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK 184
           DL+  R+V + EA +FA+EN+L+F+E SA+TGENVE+AF++ A+KI   I+ G+
Sbjct: 121 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (399), Expect = 9e-50
 Identities = 72/170 (42%), Positives = 113/170 (66%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           Y ++FK ++IG+ GVGK+CL+ +FT+  F P    TIGV+F  + +E++GEK+KLQIWDT
Sbjct: 2   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQERFR++T+SYYR A   ++ YDIT   ++  L  WL + +   +   +  L+GNK+D
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           L   R+V    A++F+E  D+ ++E SA   +NVE+ FL+ A ++    +
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (386), Expect = 1e-47
 Identities = 75/164 (45%), Positives = 106/164 (64%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +IIG+ GVGKS LL +FT+  F P+   TIGV+F  + I V G K KL IWDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           RFR +T SYYRGA G ++VYD+TRR T+  L +WL + +     N ++ ++      + +
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           R+V  +E  KFA ++ ++F+EASA T + V+ AF E  +KI Q 
Sbjct: 128 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-47
 Identities = 88/174 (50%), Positives = 119/174 (68%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQER+R +T +YYRGA GAL+VYDI +  TY ++  WL + ++  + N VI L+GNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           L   R V  DEA+ FAE+N+L F+E SA+   NVE+AF     +IY+ +   ++
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  151 bits (383), Expect = 2e-47
 Identities = 65/167 (38%), Positives = 99/167 (59%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           + Y+FK +IIG+  VGK+  L ++ +  F P    T+G++F  + I  + ++IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
           AGQER+R +T +YYRGA G +++YDIT   ++N +  W T  K  +  N  + L+GNK D
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           +E  R V  +  ++ A+     F EASA    NV+Q F      I +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (382), Expect = 4e-47
 Identities = 110/171 (64%), Positives = 137/171 (80%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           SY+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R++ + G++IKLQIWDTA
Sbjct: 1   SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 60

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
           GQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL D +  ++ N VI LIGNK DL
Sbjct: 61  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 120

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
           E  RDV+ +E + FA E+ LIF+E SA T  NVE+AF+ TAK+IY+ I+ G
Sbjct: 121 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 171

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (370), Expect = 3e-45
 Identities = 61/181 (33%), Positives = 106/181 (58%), Gaps = 11/181 (6%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE--------- 62
           Y Y+ K + +GD GVGK+  L+++T+ KF P    T+G++F  + +  + +         
Sbjct: 2   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 63  -KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDTKNLTNPN 120
            K+ LQ+WDTAGQERFR++T +++R A G L+++D+T + ++ ++ +       N    N
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 121 TVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNI 180
             I LIGNK DL   R+V   +A++ A++  + + E SA TG+NVE+A       I + +
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

Query: 181 K 181
           +
Sbjct: 182 E 182

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 3e-40
 Identities = 60/161 (37%), Positives = 98/161 (60%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK + +G+  VGK+ L+ +F    F      TIG++F ++ + +    I+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           RFR++  SY R +A A++VYDIT  +++   + W+ D +     + +I L+GNK DL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R V  +E ++ A+E +++F+E SA  G NV+Q F   A  +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 3e-40
 Identities = 66/164 (40%), Positives = 102/164 (62%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK +++G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           R+ ++   YYRGA  A++VYDIT   ++    +W+ + +   +PN VI L GNK DL   
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           R V + EA+ +A++N L+F+E SA T  NV + F+  AKK+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 8e-39
 Identities = 57/166 (34%), Positives = 98/166 (59%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           +Y FK +++G+  VGK+ L+ ++ E KF      T+G  F T+ + + G+++ L IWDTA
Sbjct: 1   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 60

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL 132
           GQERF A+   YYR + GA++VYDIT   ++  + +W+ + + +      + ++GNK+DL
Sbjct: 61  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 120

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           E  R V   EA+ +AE         SA   + +E+ FL+  K++ +
Sbjct: 121 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 6/171 (3%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           S +FK I++GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGN 128
           GQERFR++   +YRG+   L+ + +    ++ +LS+W  +     +     +    ++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 129 KMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENVEQAFLETAKKIYQ 178
           K+D+   R V  +EA+ +  +N D  + E SA    NV  AF E  +++  
Sbjct: 124 KIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 2e-35
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF    F+     TI  +F  + IEV      L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEG 134
           +F ++   Y +   G ++VY +  + ++  +         +       + L+GNK+DLE 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            R+V   E +  AEE    F+E SA +   V++ F E  +++  
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (292), Expect = 7e-34
 Identities = 66/161 (40%), Positives = 99/161 (61%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K  ++GD GVGKS ++ +F E  F P+   TIG  F T+ ++   E  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           RFRA+   YYRG+A A++VYDIT+  T++ L +W+ + +    P+ V+ + GNK DL   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           R+V   +AK +A+    IFVE SA    N+ + F+E +++I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 1e-33
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 14/182 (7%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++GD  VGK+CLL  +T  KF  +   T+  +     + + GE   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
            +  +    Y      L+ + +   S++ ++            P T   L+G ++DL   
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 136 RDV------------RYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQNIKD 182
                            + A+K A +   + +VE SA+T + ++  F E      +  + 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 183 GK 184
            K
Sbjct: 183 KK 184

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 3e-33
 Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 17/186 (9%)

Query: 4   MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 63
           M+       + + K +++GD  VGK+CLL  +    F  +   T+  +     + V G++
Sbjct: 1   MAHG---PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 56

Query: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVI 123
             L ++DTAGQE +  +    Y      L+ + +   +++ ++            PN   
Sbjct: 57  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPF 116

Query: 124 FLIGNKMDL------------EGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFL 170
            LIG ++DL               + +  ++ +K A+E     +VE SA+T + ++  F 
Sbjct: 117 LLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 176

Query: 171 ETAKKI 176
           E    I
Sbjct: 177 EAIIAI 182

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  114 bits (286), Expect = 7e-33
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 2/164 (1%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           + K I++G  GVGKS L  QF   +F+ D   T    +  +++    E     I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI-DILDTAGQ 62

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLE 133
           E + A+  +Y+R   G L V+ IT   ++   + +     +   + N    L+GNK DLE
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIY 177
             R V  +EAK  A++ ++ +VE SA T  NV++ F +  ++I 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 1e-32
 Identities = 63/163 (38%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++G+  VGKS ++ +F    F  +   TIG  F T+ + ++   +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL---E 133
           F ++   YYR A  AL+VYD+T+  ++     W+ +     + + +I L+GNK+D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           G R V  +E +K AEE  L+F E SA TGENV   FL   +KI
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 64/164 (39%), Positives = 100/164 (60%), Gaps = 5/164 (3%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           IFK I+IGD  VGK+CL ++F   +F      TIGV+F  R +++ GE+IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 75  ERF-RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDL 132
           ERF +++ + YYR     + VYD+T  ++++ L +W+ + K +L   +    L+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 133 EGSRDVRYDEAKKFAEENDLIFVEASAMT---GENVEQAFLETA 173
             +  V  D A+KFA+ + +   E SA      ++VE  F+  A
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 14/176 (7%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++GD  VGK+CLL  +T   F  +   T+  +  +  + V G+ + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
            +  +    Y     +L+ + +   +++ ++ +          PNT I L+G K+DL   
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 136 RDVR------------YDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           +D              Y +    A+E   + ++E SA+T   ++  F E  + +  
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 6e-32
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  +++    E   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEG 134
            + A+   Y R   G L V+ I    ++  +  +    K + +  +  + L+GNK D   
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           +R V   +A+  A    + ++E SA T + VE AF    ++I Q+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (279), Expect = 1e-31
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 4/181 (2%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDTKNLTNPNTVIFLIGNKM 130
           ERF+++  ++YRGA   ++V+D+T      +  +    +L         N    ++GNK+
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
           DLE  +            +N++ + E SA    NVEQAF   A+   +   + +L     
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 181

Query: 191 E 191
           E
Sbjct: 182 E 182

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 4e-31
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++G  GVGKS L  QF +  F+     TI  +   + +EV  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEG 134
           +F A+   Y +   G  +VY IT +ST+N L         + +  +  + L+GNK DLE 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIY 177
            R V  ++ +  A +  +  F+E+SA +  NV + F +  ++I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 9e-31
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 2/170 (1%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           S   K +++G  GVGKS L  QF +  F+ D       +  T+I  V G   +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTA 62

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMD 131
           GQE F A+   Y R   G L+V+ I  R ++N +    T    + +  +  + L+GNK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           LE  R V   EA  F   + + + EASA    NV++AF +  + + +  +
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 172

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 2/164 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           ++ +++G  GVGKS L  QF +  F+ D   TI  +  T+   +     +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT-KNLTNPNTVIFLIGNKMDLEG 134
            F A+   Y R   G L+V+ +T R ++  +  +     +        + LIGNK DL+ 
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            R V  +E ++ A +  + ++EASA    NV+QAF E  + I +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 6e-30
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++G+  VGKS ++ ++ +  F  D   TIGV+F  R I+V+ E ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR 136
           F A+T++YYRGA   ++V+  T R ++    S   +       +    L+ NK+DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEA-ISSWREKVVAEVGDIPTALVQNKIDLLDDS 122

Query: 137 DVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
            ++ +EA+  A+   L F   S     NV + F   A+K  Q
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (261), Expect = 3e-29
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           +K +++GD GVGKS L  QF ++ F+PD   TI   +       + +   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDN-QWAILDVLDTAGQE 63

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
            F A+   Y R   G L+VY +T ++++ +         +     +  + L+ NK+DL  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGE-NVEQAFLETAKKIYQ 178
            R V  D+ K+ A + ++ ++E SA     NV++ F +  + I Q
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  102 bits (255), Expect = 3e-28
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 13/170 (7%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            + +++G    GK+ +L++    + +   P       G  +  V  + +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTV-----GFNVETVTYKNVKFNVWDVGGQD 67

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEG 134
           + R + R YY G  G + V D   R   +     L     +    + +I +  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 135 SR---DVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           +    +++         + +     + A +G+ + +        +  N K
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL----TWLTSNYK 173

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 3e-28
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 14/176 (7%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +I+GD   GK+CLL   ++ +F      T+  E     IEV G++++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
            +  +    Y      LM + I    +  ++    T       PN  I L+GNK DL   
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 136 RDVR------------YDEAKKFAEE-NDLIFVEASAMTGENVEQAFLETAKKIYQ 178
              R             +E +  A       ++E SA T + V + F    +   Q
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  102 bits (253), Expect = 5e-28
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 9/164 (5%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           + +++G    GK+ +L++    +       T     G  +  V  + I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT-KNLTNPNTVIFLIGNKMDLEGS 135
            R + R Y++   G + V D   R   N     L          + V+ +  NK DL  +
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 136 ---RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
               ++            +       A +G+ + +     + ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 5e-28
 Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 7/174 (4%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI-KLQIWDTAG 73
           I K II+GD GVGK+ L+H++   K+      TIG +F T+ + V G+K+  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 74  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNT----VIFLIGNK 129
           QERF+++  ++YRGA   ++VYD+T  S++ ++ SW  +     N N+       ++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 130 MDLEGSRDVRYDEAKKF--AEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           +D E S+ +  +++ +       D+     SA    NV+ AF E A+   Q  +
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  100 bits (249), Expect = 3e-27
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 13/174 (7%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            + +I+G  G GK+ +L++    + +   P       G  +  +  + +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPT-----IGFNVETLSYKNLKLNVWDLGGQT 72

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEG 134
             R   R YY   A  + V D T +   +  S  L    +     +  + +  NK D  G
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 135 SRDVR---YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
           +        +      ++     V +SA+ GE + +        +   IK+ +L
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL----DWLIDVIKEEQL 182

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 4e-27
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           FK +++GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
           +F  +   YY  A  A++++D+T R TY ++ +W  D       N  I L GNK+D++  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
           +         F  + +L + + SA +  N E+ FL  A+K+  +
Sbjct: 123 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.0 bits (245), Expect = 9e-27
 Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 15/176 (8%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K +++GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS- 135
           +  V    Y  +   L+ +DI+R  T + +            PNT + L+G K DL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 136 -----------RDVRYDEAKKFAEE-NDLIFVEASAMTGEN-VEQAFLETAKKIYQ 178
                        V YD+    A++     ++E SA+  EN V   F         
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 4e-26
 Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 2/164 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K  I G  GVGKS L+ +F  ++F+ +   T+   +  +      E + ++I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD-EVVSMEILDTAGQE 61

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
                      G    L+     R S    L       +     N  + L+GNK DL+ S
Sbjct: 62  DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGE-NVEQAFLETAKKIYQ 178
           R V  +E +K A E    F E SA TGE N+ + F E  +++ +
Sbjct: 122 RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 4e-26
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
           ++  + G  GVGKS L+ +F +  F      T+   +  ++I        LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 61

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLE 133
           +F A+ R         ++VY IT R +   L         +     +  I L+GNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
            SR+V+  EA+  A      F+E SA    NV++ F E      + 
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 4e-25
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K II+G    GK+ +L+QF+  + +   P       G+ + E+     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-----IGSNVEEIVINNTRFLMWDIGGQE 70

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLEG 134
             R+   +YY      ++V D T R   +     L       +      L   NK D++ 
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 135 S---RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
                ++         +++        A+TGE + Q       ++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 6e-24
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 3/168 (1%)

Query: 15  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           ++K +++G  GVGKS L   F   +  P+           R I V GE+  L ++D   Q
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQ 58

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFL-IGNKMDLE 133
           +  R +           ++VY +T + ++   S      +     + V  + +GNK DL 
Sbjct: 59  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 118

Query: 134 GSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
            SR+V  DE +  A   D  F+E SA    NV+  F    ++I     
Sbjct: 119 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 166

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 90.8 bits (224), Expect = 1e-23
 Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 9/170 (5%)

Query: 11  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 70
           +     + +++G    GK+ LL Q   +      P       G  I  V  +  KL +WD
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNIKSVQSQGFKLNVWD 66

Query: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT-KNLTNPNTVIFLIGNK 129
             GQ + R   RSY+      + V D   R  +      LT+  +        + +  NK
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

Query: 130 MDLEGSRD---VRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
            DL  +     +          +        SA+TGE V+       K +
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 89.7 bits (221), Expect = 3e-23
 Identities = 35/165 (21%), Positives = 57/165 (34%), Gaps = 9/165 (5%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            + +++G    GK+ +L +F  +        TI    G  I  +     KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEG 134
             R+  R+Y+    G + V D   R         L             + +  NK DL G
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 135 SRDVRYDEAK---KFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +      +          +       SA+TGE++          I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (220), Expect = 3e-23
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 2/165 (1%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           S   K  I+G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTA
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTA 60

Query: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMD 131
           GQ+ +    ++Y     G ++VY +T   ++  +          +      I L+GNK D
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           L   R + Y+E K  AE  +  F+E+SA   +     F     + 
Sbjct: 121 LHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 6e-23
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 7/173 (4%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            +  ++GD   GKS L+H+F    +          E   + + V G+   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD--LE 133
             +     +         + D       + L   L+  +        + L+G +      
Sbjct: 64  DAK--FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 134 GSRDVRYDEAKKFA-EENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKL 185
             R V    A+    +     + E  A  G NV++ F E A+K+    K  +L
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 16/164 (9%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 76
           K + +G    GK+ LLH     +       T+   +     E+    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEGS 135
            R + + Y+    G + + D      ++     L          +    ++GNK+D   +
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 136 RDVR----------YDEAKKFAEENDLIFVEASAMTGENVEQAF 169
                            +++   +  +     S +      +AF
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 29/170 (17%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            +  ++G    GK+  ++     +F  D   T+G        ++    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP-NTVIFLIGNKMDLEG 134
           RFR++   Y RG +  + + D   +       + L +  +        + ++GNK DL G
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 135 S---RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIK 181
           +   +++         ++ ++     S    +N++       + + Q+ K
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL----QWLIQHSK 164

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (202), Expect = 2e-20
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 3/168 (1%)

Query: 14  YIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
             ++ ++IG+ GVGKS L + F      M      +G +   R + V GE   + + D  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 73  -GQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDTKNLTNPNTVIFLIGNKM 130
             +     +     +     L+VY IT R+++       +   +     +  I L+GNK 
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121

Query: 131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQ 178
           DL   R+V   E +  A   D  F+E SA    NV++ F    +++  
Sbjct: 122 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 82.1 bits (201), Expect = 3e-20
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            + +I+G  G GK+ +L++    + +   P       G  +  V  + +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPT-----IGFNVETVTYKNLKFQVWDLGGLT 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEG 134
             R   R YY      + V D   R       S L    +       ++ +  NK D+E 
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 135 SRDVR---YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +               ++      + SA  G  +++A     + +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.7 bits (188), Expect = 7e-18
 Identities = 25/183 (13%), Positives = 50/183 (27%), Gaps = 20/183 (10%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           Y    + +++G    GKS ++ Q      +     T G+       +   +K+   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIF----ETKFQVDKVNFHMFDV 54

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDTKNLTN--------PN 120
            GQ   R      +      + V   +  +      +    L +  NL            
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 121 TVIFLIGNKMDLEGSRDVRYDEA-KKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
             + L  NK DL   + +      + +  E         A      +         I   
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 180 IKD 182
              
Sbjct: 175 FLR 177

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 75.9 bits (185), Expect = 9e-18
 Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 21/177 (11%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K + +G    GK+ LLH   + +     P            E+    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-----LHPTSEELTIAGMTFTTFDLGGHI 68

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-TKNLTNPNTVIFLIGNKMDLEG 134
           + R V ++Y     G + + D             L     + T  N  I ++GNK+D   
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 135 SRDVR---------------YDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +                      + K      L     S +  +   + F   A+ I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.0 bits (178), Expect = 1e-16
 Identities = 25/170 (14%), Positives = 44/170 (25%), Gaps = 20/170 (11%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++G    GKS  L Q    + +     T G+       +   + +  ++ D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGI----HEYDFEIKNVPFKMVDVGGQR 55

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDT-----------KNLTNPNTVIF 124
             R      +      L +   +                           N    N  I 
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK 174
           L  NK DL   +         F E              + + + F    +
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ--KFLVECFRGKRR 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.3 bits (176), Expect = 2e-16
 Identities = 27/201 (13%), Positives = 50/201 (24%), Gaps = 43/201 (21%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++G    GKS  + Q            T G+           + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE----YPFDLQSVIFRMVDVGGQR 56

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNH-----------LSSWLTDTKNLTNPNTVIF 124
             R      +      + +  ++                   + + T        N+ + 
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEEND--------------------------LIFVEAS 158
           L  NK DL   + +       F E +                           +      
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 159 AMTGENVEQAFLETAKKIYQN 179
           A   EN+   F      I Q 
Sbjct: 177 ATDTENIRFVFAAVKDTILQL 197

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.6 bits (174), Expect = 5e-16
 Identities = 24/188 (12%), Positives = 52/188 (27%), Gaps = 11/188 (5%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           + +G    GK+ L  +    ++      +I        +  +       I     +    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 79  AVTRSYYRGAAGALMVYDI-----TRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE 133
            +   +   A   + V D        +     L   L D+  L N  +++ +  NK D+ 
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL-IACNKQDIA 121

Query: 134 GSR---DVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLNANMT 190
            ++    ++    K+            S +   +   A L   K          L     
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL-GKKGKEFEFSQLPLKVEFL 180

Query: 191 ESGVQHKE 198
           E   +   
Sbjct: 181 ECSAKGGR 188

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.4 bits (153), Expect = 4e-13
 Identities = 28/201 (13%), Positives = 52/201 (25%), Gaps = 46/201 (22%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +++G    GKS ++ Q              G+           + +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIV----ETHFTFKDLHFKMFDVGGQR 53

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-----------WLTDTKNLTNPNTVIF 124
             R      + G    +    ++                     + +   N    +T I 
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 125 LIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEA--------------------------S 158
           L  NK DL   +  +      + E       E                            
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 159 AMTGENVEQAFLETAKKIYQN 179
           A   +NV+  F      I +N
Sbjct: 174 ATDTKNVQFVFDAVTDVIIKN 194

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.7 bits (138), Expect = 5e-11
 Identities = 32/174 (18%), Positives = 50/174 (28%), Gaps = 23/174 (13%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 72
           SY    II G    GK+ LL   T     P    T+  +      +  G  +   + D  
Sbjct: 1   SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFP 54

Query: 73  GQERFRAVTRSYYRGAAGA-----LMVYDITRRSTYNHLSSWLTDTKNLTN----PNTVI 123
           G  + R     Y +  A        MV            + +L D  ++T         I
Sbjct: 55  GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 114

Query: 124 FLIGNKMDLEGSRDVRYDEAK--------KFAEENDLIFVEASAMTGENVEQAF 169
            +  NK +L  +R     +              +  L  VE      +  E   
Sbjct: 115 LIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 51.3 bits (121), Expect = 6e-09
 Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 1/161 (0%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 75
            K +I G    GKS LL+    ++         G         +H + + L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS 135
                        A   +          +  ++   D   +             + +  +
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 136 RDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           +     E    +E N    +  SA TGE V+       + +
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 19/160 (11%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQK---------FMPDCPHTIGVEFGTRIIEVHGEKIKLQ 67
           + +I+G   VGKS LL++   +             D      V  G     V    ++ +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIG 127
             D   +      T      A   L V D +                           + 
Sbjct: 62  TNDLVERLGIER-TLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 128 NKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167
            K++         +   K   +  ++ +  SA+ GE +E+
Sbjct: 121 EKIN-------EEEIKNKLGTDRHMVKI--SALKGEGLEK 151

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 10/138 (7%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV--HGEKIKLQIWDTAGQERF 77
           + G+ G GKS  ++         +     GV   T       H     +  WD  G    
Sbjct: 61  VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 120

Query: 78  RAVTRSY---YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
                +Y    +       +     R   N +       K ++      + +  K+D   
Sbjct: 121 NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIA----KAISMMKKEFYFVRTKVD-SD 175

Query: 135 SRDVRYDEAKKFAEENDL 152
             +    E + F +E  L
Sbjct: 176 ITNEADGEPQTFDKEKVL 193

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 24/156 (15%), Positives = 42/156 (26%), Gaps = 11/156 (7%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG------ 73
           ++G    GKS LL   T             +     ++EV  E+ +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-RFTLADIPGIIEGAS 64

Query: 74  --QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
             +       R   R      ++                    +         +  NK+D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ 167
           L     V+            L  +  SA+TG  +  
Sbjct: 125 LLEEEAVK--ALADALAREGLAVLPVSALTGAGLPA 158

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 25/162 (15%), Positives = 42/162 (25%), Gaps = 7/162 (4%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFM-----PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 74
           I+G   VGKS LL+     K       P           T             +      
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA 69

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
                    Y   A    +V+ +  R         +            I L+GNK+D   
Sbjct: 70  LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
             +       +   E +   +  SA+    V +   +    +
Sbjct: 130 YPEEAMKAYHELLPEAEPRML--SALDERQVAELKADLLALM 169

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 13/176 (7%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQK-----------FMPDCPHTIGVEFGTRIIEVHGEKI 64
            K  I+G   VGKS L +    ++             P              ++  G + 
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF 124
           K ++     ++            A   ++V D T+  T           +       V  
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 125 LIGNKMDLEGSRDVRYDEAK-KFAEENDLIFVEASAMTGENVEQAFLETAKKIYQN 179
                +  E   D      + K    +    +  SA  G N+++  ++     Y +
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR-MIDAMNLAYAS 183

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 15/169 (8%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG------ 73
           ++G   VGKS LL   +  K      H   +     ++E    +    + D  G      
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-SFVMADLPGLIEGAH 64

Query: 74  --QERFRAVTRSYYRGAAGALMVY----DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIG 127
                     R   R      ++     +           +      NL        ++ 
Sbjct: 65  QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124

Query: 128 NKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKI 176
           NKMD+  + +      +K  ++  +  +  SA+T E + +   E A ++
Sbjct: 125 NKMDMPEAAENLEAFKEKLTDDYPVFPI--SAVTREGLRELLFEVANQL 171

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 10/162 (6%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ- 74
            +    G    GKS  L+  T QK +     T G      + EV   K  + +       
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 75  ------ERFRAVTRSYYRGAAGALMVYDITRRSTYNH--LSSWLTDTKNLTNPNTVIFLI 126
                  +++     Y         +  +              +    +      V+   
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 127 GNKMDLEGSRDVRYDEAKKFAEENDLI-FVEASAMTGENVEQ 167
            +K+     +       +     N  +     S++  + V++
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 21/187 (11%), Positives = 51/187 (27%), Gaps = 9/187 (4%)

Query: 1   MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 60
           + +     QY    + +  + G   VGKS  ++    +K +       G         ++
Sbjct: 9   VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN 68

Query: 61  GEKIKLQIWDTAG------QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTK 114
            E   + +           +          Y      L          +   +  +   +
Sbjct: 69  DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYE 128

Query: 115 NLTNPNTVIFLIGNKMDLEGSRDVRYDE---AKKFAEENDLIFVEASAMTGENVEQAFLE 171
            L      + +I  K D               +    + +   +  S+ T +  ++A+  
Sbjct: 129 FLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGA 188

Query: 172 TAKKIYQ 178
             K I +
Sbjct: 189 IKKMINR 195

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 9/138 (6%)

Query: 36  TEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA-LMV 94
            E    P+   T          +      ++   D  G E   A       GAA     +
Sbjct: 58  CESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATM---LSGAALMDGAI 114

Query: 95  YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG--SRDVRYDEAKKFAEE--- 149
             +     +    +              + ++ NK+D+        +Y + K+F +    
Sbjct: 115 LVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA 174

Query: 150 NDLIFVEASAMTGENVEQ 167
            ++  +  SA+   N++ 
Sbjct: 175 ENVPIIPVSALHKINIDS 192

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 10/169 (5%)

Query: 20  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT-----AGQ 74
           I+G   VGKS LL++   QK                 I   G    + +          +
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG 134
              R + ++         +V  +   + +      + + K       VI  +    +++ 
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLN-KLREGKAPVILAVNKVDNVQE 128

Query: 135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDG 183
             D+        ++ N L  V  SA TG NV+      A  + +++ + 
Sbjct: 129 KADLLPHLQFLASQMNFLDIVPISAETGLNVD----TIAAIVRKHLPEA 173

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (83), Expect = 9e-04
 Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 36/190 (18%)

Query: 19  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 78
           I  G   VGKS L+++ T +K         G   G     +  E    +I D  G     
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKV------RRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMM 57

Query: 79  ---------------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKN-------L 116
                                 +    A++V D               +          L
Sbjct: 58  GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117

Query: 117 TNPNTVIFLIGNKMDLEGSRDVRYDEAKKF----AEENDLIFVEASAMTGENVEQAFLET 172
              +    +  NK+D   +     +   +       E D +F+  SA  G+N+E+     
Sbjct: 118 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLK--- 174

Query: 173 AKKIYQNIKD 182
             +I++ I++
Sbjct: 175 -NRIFEVIRE 183

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 18/175 (10%)

Query: 20  IIGDMGVGKSCLLHQFTEQK--------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 71
           I+G   VGKS L ++  ++K         +   P    VE+  +  ++            
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMD 131
              ++ + VT +  R A   L V D  R  T    S        L        L+ NK +
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLA----DFLRKSTVDTILVANKAE 120

Query: 132 LEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN 186
                +             + I V  SA    N++       + I + +++  L+
Sbjct: 121 NLREFEREVKPELYSLGFGEPIPV--SAEHNINLDTML----ETIIKKLEEKGLD 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.9
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.9
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.86
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.84
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.83
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.81
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.77
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.62
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.61
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.61
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.6
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.59
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.5
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.49
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.33
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.32
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.22
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.16
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.05
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.98
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.95
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.42
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.42
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.36
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.25
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.15
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.09
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.94
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.87
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.85
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.73
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.71
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.67
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.63
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.62
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.58
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.57
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.52
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.51
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.5
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.48
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.48
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.46
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.45
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.4
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.35
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.35
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.32
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.31
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.27
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.27
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.26
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.25
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.21
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.21
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.17
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.15
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.15
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.14
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.14
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.14
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.12
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.1
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.09
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.08
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.07
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.06
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.05
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.04
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.04
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.03
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.02
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.02
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.0
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.99
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.97
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.91
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.91
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.91
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.89
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.88
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.88
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.87
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.82
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.8
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.8
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.78
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.77
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.75
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.73
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.72
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.69
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.69
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.69
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.64
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.63
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.61
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.55
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.53
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.45
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.43
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.41
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.39
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.38
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.37
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.35
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.33
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.19
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.14
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.13
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.13
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.11
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.06
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.03
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.0
d1okkd2	207	GTPase domain of the signal recognition particle r	95.95
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.94
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.9
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.89
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.74
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.72
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.58
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.46
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.45
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.42
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.41
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.39
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.38
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.34
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.33
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.29
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.24
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.17
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.16
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.14
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.12
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.1
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.09
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.01
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.98
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.97
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.94
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.93
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.82
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.8
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.75
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.51
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.49
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.44
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.41
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.39
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.36
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.29
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.17
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.1
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.87
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.86
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.71
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.52
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.29
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.24
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.21
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.17
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.83
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.58
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.57
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.85
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.76
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.34
d1okkd2	207	GTPase domain of the signal recognition particle r	91.01
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.97
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.91
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.23
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.01
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.01
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.74
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.71
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.52
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.47
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.21
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.84
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.62
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.47
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.39
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.13
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.78
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	86.42
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.0
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.8
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.56
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	85.17
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.06
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.38
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.21
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	84.13
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.0
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	82.83
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.64
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	82.44
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	80.96

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-37  Score=221.97  Aligned_cols=168  Identities=39%  Similarity=0.732  Sum_probs=157.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      ++.+.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+......+.+.+||++|++.+..++..+++.+|+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            36789999999999999999999999999999989999988888888888899999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +|+|||+++++++..+..|+..+........|+++++||.|+...+.+..++++.+++..+++|++|||++|.|++++|+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999999888777777899999999999988888888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1169         171 ETAKKIYQ  178 (218)
Q Consensus       171 ~i~~~~~~  178 (218)
                      +|++.+++
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998876

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-37  Score=220.16  Aligned_cols=169  Identities=43%  Similarity=0.833  Sum_probs=157.9

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      ++.+.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+++
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            36788999999999999999999999999998888898899888899999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +++|||+++..+++.+..|+..+........|+++|+||+|+...+.+..++++.+++..++++++|||++|.|++++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            99999999999999999999988877777899999999999987778888899999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy1169         171 ETAKKIYQN  179 (218)
Q Consensus       171 ~i~~~~~~~  179 (218)
                      +|++.+++.
T Consensus       161 ~l~~~l~~~  169 (171)
T d2ew1a1         161 DLACRLISE  169 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999888764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-37  Score=217.66  Aligned_cols=165  Identities=88%  Similarity=1.361  Sum_probs=155.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +++.+||+|+|++|||||||+++|+++.+...+.++.+.+.......+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            46789999999999999999999999999999888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||+++.++|+.+..|+..+........|+++++||.|+...+....++++.+++..++++++|||++|.|++++|..
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888877788999999999999888888888999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1169         172 TAKKI  176 (218)
Q Consensus       172 i~~~~  176 (218)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=217.87  Aligned_cols=172  Identities=63%  Similarity=1.088  Sum_probs=160.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      |++.+||+|+|.+|||||||+++|..+.+...+.++.+.......+..++..+.+.+||++|++.+..++..+++.++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            67889999999999999999999999999999899988888778887888999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||.++.+++..+..|+..+......+.|+++++||+|+...+.....++.++++..+++|+++||++|.|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999988877788999999999999888888888899999999999999999999999999999


Q ss_pred             HHHHHHHhhhcC
Q psy1169         172 TAKKIYQNIKDG  183 (218)
Q Consensus       172 i~~~~~~~~~~~  183 (218)
                      +++.+++++..+
T Consensus       162 l~~~i~~~~~~~  173 (174)
T d2bmea1         162 CARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999876654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=220.26  Aligned_cols=165  Identities=35%  Similarity=0.684  Sum_probs=148.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.+........++..+.+.+||++|...+..++..+++.+|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999999999999888888888899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |||+++++||+.+..|+..+........|+++++||.|+...+.+..++++++++..+++|++|||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888776667889999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1169         174 KKIYQ  178 (218)
Q Consensus       174 ~~~~~  178 (218)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-37  Score=218.55  Aligned_cols=163  Identities=34%  Similarity=0.588  Sum_probs=152.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|..+.+...+.++.+.+.........+..+.+.+||++|++.+..+...+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999999999998888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      ||++++++|+.+..|+..+.... .++|+++|+||+|+...+.+..++++++++.++++|+++||++|.|++++|+.|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999887665 57999999999999888888889999999999999999999999999999999999


Q ss_pred             HHHH
Q psy1169         175 KIYQ  178 (218)
Q Consensus       175 ~~~~  178 (218)
                      .+++
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-36  Score=216.32  Aligned_cols=173  Identities=51%  Similarity=0.877  Sum_probs=156.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      +++.+||+|+|++|||||||+++|+++.+...+.++.+.+.....+.+++..+.+.+||++|.+.+...+..+++.+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            46789999999999999999999999999988888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+|||.+++++|..+..|+..+......++|+++|+||+|+.+.+....+....+....+.+|+++||++|.|++++|+.
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            99999999999999999999998888788999999999999877777777788888889999999999999999999999


Q ss_pred             HHHHHHHhhhcCc
Q psy1169         172 TAKKIYQNIKDGK  184 (218)
Q Consensus       172 i~~~~~~~~~~~~  184 (218)
                      +++.+.+..++.+
T Consensus       161 l~~~i~~~~~~~q  173 (175)
T d2f9la1         161 ILTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhhcc
Confidence            9999987766554

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=217.39  Aligned_cols=170  Identities=34%  Similarity=0.505  Sum_probs=153.4

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      +++...+||+|+|++|||||||+++|+.+.+...+.++.. +.....+.+++..+.+.+||++|.+++...+..+++.+|
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence            4567889999999999999999999999999888877754 444567778999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ++|+|||+++..+|+.+..|+..+.... ..+.|+++|+||+|+...+....+++..++...+++|++|||++|.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            9999999999999999999998876543 467999999999999888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy1169         169 FLETAKKIYQNI  180 (218)
Q Consensus       169 ~~~i~~~~~~~~  180 (218)
                      |+.|++.+.++.
T Consensus       160 f~~l~~~i~k~~  171 (173)
T d2fn4a1         160 FEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-36  Score=218.49  Aligned_cols=176  Identities=45%  Similarity=0.868  Sum_probs=162.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .+.+.+||+|+|++|||||||+++|..+.+...+.++.+..+....+.+++..+.+.+||++|++.+..++..+++.+++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            46789999999999999999999999999999999999988888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +|+|||+++++++..+..|+..+........|+++|+||.|+.+.+.+..++...++...++.|+++||++|.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999998888777778899999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCccc
Q psy1169         171 ETAKKIYQNIKDGKLN  186 (218)
Q Consensus       171 ~i~~~~~~~~~~~~~~  186 (218)
                      .|++.+.+......++
T Consensus       162 ~l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         162 TMARQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHhhhcccC
Confidence            9999998765544333

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=215.41  Aligned_cols=170  Identities=64%  Similarity=1.085  Sum_probs=153.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+|+|++|||||||+++++++.+...+.++.............+..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            67999999999999999999999999998888888888888888888899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |||++++.+|+.+..|+..+......++|+++|+||+|+...+....+++..++...+++|+++||++|.|++++|..++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999988887778899999999999988888888899999999999999999999999999999999


Q ss_pred             HHHHHhhhcC
Q psy1169         174 KKIYQNIKDG  183 (218)
Q Consensus       174 ~~~~~~~~~~  183 (218)
                      +.+++...++
T Consensus       162 ~~i~~~~~~~  171 (173)
T d2a5ja1         162 KEIYRKIQQG  171 (173)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcc
Confidence            9998776543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.5e-36  Score=212.12  Aligned_cols=164  Identities=32%  Similarity=0.537  Sum_probs=149.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+++|++|||||||+++++++.+.+.+.++.+..+ ...+.+++..+.+.+||++|.+.+..+...+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999999999999999888888876555 55667889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC-CHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE-NVEQAFLET  172 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~~i  172 (218)
                      ||++++++|+.+..|+..+.... ....|+++++||+|+...+.+..+++++++..++++|+++||+++. ||+++|..|
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            99999999999999999887654 4579999999999999988899999999999999999999999875 999999999


Q ss_pred             HHHHHHh
Q psy1169         173 AKKIYQN  179 (218)
Q Consensus       173 ~~~~~~~  179 (218)
                      ++.++++
T Consensus       163 ~~~i~~~  169 (169)
T d1x1ra1         163 VRVIRQQ  169 (169)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=4.2e-36  Score=213.78  Aligned_cols=164  Identities=33%  Similarity=0.556  Sum_probs=147.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+|+|++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|.+++..++..+++.+|++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999999999988888776 4556689999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |||+++..+|+.+..|+..+.... ..++|+++|+||.|+.+.+.+..++++++++..+++|+++||++|.|++++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998887654 4689999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         173 AKKIYQ  178 (218)
Q Consensus       173 ~~~~~~  178 (218)
                      ++.+..
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-35  Score=211.43  Aligned_cols=163  Identities=40%  Similarity=0.721  Sum_probs=153.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+|+|.+|||||||+++|..+.+...+.++............+.....+.+||++|++.+..++..+++.++++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999988888888888899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |||++++++|+.+..|+..+........|+++|+||+|+.+.+.+..+++++++...+++|++|||++|.|++++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999888887778999999999999988888888999999999999999999999999999999998


Q ss_pred             HHH
Q psy1169         174 KKI  176 (218)
Q Consensus       174 ~~~  176 (218)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            775

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-36  Score=213.32  Aligned_cols=164  Identities=28%  Similarity=0.387  Sum_probs=133.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|.+..+... .++.. ......+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            47999999999999999999988765433 33333 33456677899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||++++++|+.+..|+..+.... ...+|+++|+||+|+.+.+++...+++++++.++++|++|||++|.|++++|..|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999887654 35789999999999988888888999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy1169         174 KKIYQNI  180 (218)
Q Consensus       174 ~~~~~~~  180 (218)
                      +.+..+.
T Consensus       159 ~~i~~~~  165 (168)
T d2gjsa1         159 RQIRLRR  165 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-36  Score=212.27  Aligned_cols=161  Identities=37%  Similarity=0.700  Sum_probs=151.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999888888888888889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      |+++..+|+.+..|+..+......+.|+++|+||.|+.+.+.+..+++.+++...+++|++|||++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999998887777889999999999998888888899999999999999999999999999999999876


Q ss_pred             H
Q psy1169         176 I  176 (218)
Q Consensus       176 ~  176 (218)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-36  Score=212.68  Aligned_cols=164  Identities=30%  Similarity=0.447  Sum_probs=149.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..+...++..+|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3568999999999999999999999999988888888776 466778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      +|||++++++|+.+..|+..+.... ..++|+++|+||+|+...+.+..++++++++.++++|++|||++|.|++++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998887654 467999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         172 TAKKIY  177 (218)
Q Consensus       172 i~~~~~  177 (218)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=214.49  Aligned_cols=168  Identities=24%  Similarity=0.398  Sum_probs=145.8

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      .|....+||+|+|++|||||||+++|+.+.+...+.+|.+.. ....+...+..+.+.+||++|++.+..++..+++.+|
T Consensus         4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~-~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~   82 (185)
T d2atxa1           4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   82 (185)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee-eeEEEeeCCceEEeecccccccchhhhhhhhcccccc
Confidence            357889999999999999999999999999998888887644 4566667888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCC-CcEEE
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEEND-LIFVE  156 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~  156 (218)
                      ++++|||+++++||+.+..|+.........+.|+++|+||.|+.+            .+.+..+++.++++..+ +.|+|
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            999999999999999876655555444457899999999999864            35677888999998866 78999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHH
Q psy1169         157 ASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       157 ~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                      |||++|.|++++|+.+++.++.
T Consensus       163 ~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             ecCCCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999988853

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=211.13  Aligned_cols=165  Identities=39%  Similarity=0.705  Sum_probs=154.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|++|||||||+++|+.+.+...+.++.+..............+.+.+||++|++.+..++..+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            45689999999999999999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      +|||.++.++|+.+..|+..+.....++.|+++|+||+|+...+.+..+++++++...+++|+++||++|.|++++|..|
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998887777899999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1169         173 AKKIY  177 (218)
Q Consensus       173 ~~~~~  177 (218)
                      ++.+.
T Consensus       164 ~~~i~  168 (170)
T d1r2qa_         164 AKKLP  168 (170)
T ss_dssp             HHTSC
T ss_pred             HHHHh
Confidence            87664

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-36  Score=214.07  Aligned_cols=170  Identities=42%  Similarity=0.821  Sum_probs=129.2

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .+++.+||+|+|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            36788999999999999999999999999888888888888888899999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||.|+...+....+++..++...+++|++|||++|.|++++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988877778899999999999988888887888999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1169         171 ETAKKIYQNI  180 (218)
Q Consensus       171 ~i~~~~~~~~  180 (218)
                      +|++.+.++.
T Consensus       162 ~l~~~i~~k~  171 (173)
T d2fu5c1         162 TLARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=214.24  Aligned_cols=163  Identities=28%  Similarity=0.388  Sum_probs=146.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+|+|++|||||||+++|+.+.+...+.+|.+..+ .....+++..+.+.+||++|.+.+......+++.+|++|+
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            368999999999999999999999999888888887665 4455678899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTN--PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |||++++++|+.+..|+..+.....  .++|+++|+||+|+...+.+..++++++++.++++|++|||++|.|++++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999887765432  57899999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         172 TAKKIY  177 (218)
Q Consensus       172 i~~~~~  177 (218)
                      |++.+.
T Consensus       160 l~~~~~  165 (171)
T d2erxa1         160 LLNLEK  165 (171)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            987653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=213.64  Aligned_cols=171  Identities=36%  Similarity=0.688  Sum_probs=151.7

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC----------eEEEEEEeeCcchhhhhhh
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG----------EKIKLQIWDTAGQERFRAV   80 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~   80 (218)
                      ++.+.+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+||++|++.+..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            367889999999999999999999999998888888877777666665433          3468899999999999999


Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                      +..+++.+|++|+|||++++.+|+.+..|+..+.... ....|+++|+||.|+...+++..+++.++++.++++|+++||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            9999999999999999999999999999988766543 357889999999999888889999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHhhh
Q psy1169         160 MTGENVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       160 ~~~~~i~~~~~~i~~~~~~~~~  181 (218)
                      ++|.|++++|++|++.+.++..
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=206.92  Aligned_cols=165  Identities=32%  Similarity=0.495  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+|+|++|||||||+++|..+.+...+.++.+. .....+.+++..+.+.+||++|.+.+......+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            4489999999999999999999999998888888664 446666789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |||.+++++|+.+..|+..+.... ....|+++|+||.|+...+.+..+++.++++..+++|++|||++|.|++++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998766543 4578999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy1169         173 AKKIYQN  179 (218)
Q Consensus       173 ~~~~~~~  179 (218)
                      ++.+.++
T Consensus       163 ~~~i~k~  169 (171)
T d2erya1         163 VRVIRKF  169 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=206.53  Aligned_cols=167  Identities=41%  Similarity=0.805  Sum_probs=145.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCC
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (218)
                      -|+..+||+|+|+++||||||+++|+.+.+... ..++.+.+.....+..++..+.+.||||+|++.+..++..+++.+|
T Consensus         2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            478899999999999999999999999887654 4555677777778888999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++++|||++++++++.+..|+..+........|+++++||.|+...+.+..+++..+++..+++|+++||++|.|++++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999988877777789999999999999888898899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1169         170 LETAKKIY  177 (218)
Q Consensus       170 ~~i~~~~~  177 (218)
                      .+|++.+.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99998875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=210.48  Aligned_cols=163  Identities=25%  Similarity=0.445  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|..+.+...+.++.+... .......+..+.+.+||++|++++..++..+++.+|++|+|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            58999999999999999999999999988888877554 55566788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhC-CCcEEEeccCC
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEEN-DLIFVEASAMT  161 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~-~~~~~~~S~~~  161 (218)
                      ||+++++||+.+..|+.........+.|+++|+||.|+.+            .+.+..+++++++... +++|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999998766555555557899999999999853            3457778899999885 57899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (218)
                      |.|++++|+.+++.+++
T Consensus       162 ~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         162 QKGLKNVFDEAILAALE  178 (191)
T ss_dssp             CTTHHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhc
Confidence            99999999999887743

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-35  Score=207.74  Aligned_cols=163  Identities=32%  Similarity=0.498  Sum_probs=143.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|+.+.+...+.+|.+..+... +..++..+.+.+||++|.+.+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            48999999999999999999999999999999988877544 4478889999999999988765 456688999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCC-CHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGE-NVEQAFLET  172 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~~i  172 (218)
                      ||++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++++++++.++++|+++||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999999876655433 3579999999999998888889999999999999999999999998 599999999


Q ss_pred             HHHHHHh
Q psy1169         173 AKKIYQN  179 (218)
Q Consensus       173 ~~~~~~~  179 (218)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=207.26  Aligned_cols=163  Identities=28%  Similarity=0.421  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      ..||+|+|++|||||||+++|..+.+...+.++.+.. ......+++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-ccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            4799999999999999999999999998888887644 355666788999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC------------ccccHHHHHHHHHhCC-CcEEEeccCC
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS------------RDVRYDEAKKFAEEND-LIFVEASAMT  161 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~  161 (218)
                      ||+++++||+.+..|+........+++|+++++||+|+...            +.+..++++.+++..+ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999887666555555578999999999999643            3467788999999877 5799999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~~~  178 (218)
                      |.|++++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-35  Score=206.92  Aligned_cols=164  Identities=29%  Similarity=0.465  Sum_probs=147.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+|+|++|||||||+++|+++.+...+.++.+.. ......+++..+.+.+||++|.+.+......+++.+|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeee-eeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            35899999999999999999999999988888887644 45566788899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLET  172 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i  172 (218)
                      |||++++++|..+..|+..+.... .+++|+++|+||+|+...+.+..++++.++...+++|++|||++|.|++++|..|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            999999999999999998877644 3579999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         173 AKKIYQ  178 (218)
Q Consensus       173 ~~~~~~  178 (218)
                      ++++..
T Consensus       161 ~~~i~~  166 (167)
T d1kaoa_         161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            987753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=205.28  Aligned_cols=163  Identities=32%  Similarity=0.515  Sum_probs=146.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            358999999999999999999999999998888887665 4555678889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-CCCcEEEeccCCCCCHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |||++++++|+.+..|+..+.... .+.+|+++|+||+|+...+....+++..++.. .+++|++|||++|.|++++|.+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999998877643 46799999999999988888888888898877 5789999999999999999999


Q ss_pred             HHHHHH
Q psy1169         172 TAKKIY  177 (218)
Q Consensus       172 i~~~~~  177 (218)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-34  Score=205.49  Aligned_cols=165  Identities=45%  Similarity=0.827  Sum_probs=146.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus         1 ~~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            36899999999999999999999999999999999999988999899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      |||.+++++++.+..|+..+........|++++++|.|+. .+....+++++++..++++|++|||+++.|++++|++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999999888888777889999999999985 444666889999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy1169         174 KKIYQN  179 (218)
Q Consensus       174 ~~~~~~  179 (218)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=205.59  Aligned_cols=163  Identities=38%  Similarity=0.692  Sum_probs=150.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+|+|++|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+||++|.+.+..++..++..+|++|+
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC---CccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG---SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFL  170 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~  170 (218)
                      |||++++.+|+.+..|+..+........|+++++||.|+.+   .+.+..++++++++..+++|+++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999887777777899999999999853   467788899999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1169         171 ETAKKI  176 (218)
Q Consensus       171 ~i~~~~  176 (218)
                      .|++.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            887653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-34  Score=201.83  Aligned_cols=162  Identities=31%  Similarity=0.538  Sum_probs=146.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|+++.+...+.++.+..+... +...+..+.+.+||++|.+.+......+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            48999999999999999999999999988888888776544 55788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTN-PNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETA  173 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~  173 (218)
                      ||++++.+|+.+..|+..+..... .++|+++|+||+|+. .+.+..+++++++...+++|+++||++|.|++++|..|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999998876543 579999999999985 455667889999999999999999999999999999999


Q ss_pred             HHHHH
Q psy1169         174 KKIYQ  178 (218)
Q Consensus       174 ~~~~~  178 (218)
                      +.+.+
T Consensus       161 ~~i~~  165 (166)
T d1ctqa_         161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=211.90  Aligned_cols=161  Identities=31%  Similarity=0.566  Sum_probs=141.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|+.+.+...+.+|.+.++....+..++..+.+.+||++|+..+..++..+++.+|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999988888888888888888888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAFLETAK  174 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~  174 (218)
                      ||++++++|+.+..|+..+.... .++|+++|+||+|+...+..  ++...++...+++|+++||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998887665 57999999999999765533  3456788889999999999999999999999999


Q ss_pred             HHHH
Q psy1169         175 KIYQ  178 (218)
Q Consensus       175 ~~~~  178 (218)
                      .++.
T Consensus       160 ~l~~  163 (170)
T d1i2ma_         160 KLIG  163 (170)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            8864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=201.21  Aligned_cols=168  Identities=48%  Similarity=0.808  Sum_probs=153.0

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      +....+||+|+|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            34677999999999999999999999999999988888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      +|+|||++++.+++.+..|+..+.... ....|+++++||.|.. .+.+...++++++..++++|+++||++|.|++++|
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999998887654 3478899999999974 55677788999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy1169         170 LETAKKIYQN  179 (218)
Q Consensus       170 ~~i~~~~~~~  179 (218)
                      +++++.+++.
T Consensus       162 ~~l~~~l~~~  171 (177)
T d1x3sa1         162 EELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHccC
Confidence            9999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=206.24  Aligned_cols=166  Identities=25%  Similarity=0.473  Sum_probs=142.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ++..+||+|+|++|||||||+++|+.+.+...+.++.+... ...+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeece-eeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            57789999999999999999999999999998888876544 45566789999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc------------cccHHHHHHHHHhCC-CcEEEec
Q psy1169          92 LMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR------------DVRYDEAKKFAEEND-LIFVEAS  158 (218)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~S  158 (218)
                      |+|||+++.++|+.+..|+.........++|+++|+||+|+...+            .....++..+++..+ ++|+|||
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            999999999999999775544444445689999999999985442            345567888888765 7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q psy1169         159 AMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       159 ~~~~~~i~~~~~~i~~~~~~  178 (218)
                      |++|.|++++|+.+++.+++
T Consensus       161 Ak~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCcCHHHHHHHHHHHHcC
Confidence            99999999999999998854

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-33  Score=198.91  Aligned_cols=167  Identities=37%  Similarity=0.673  Sum_probs=146.5

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .+...+||+|+|++|||||||+++|..+.+...+.++.+...........+..+.+.+||++|..........++..+++
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   81 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   81 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence            35678999999999999999999999999999998988888888888889999999999999999988899999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhhc----CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCCCCH
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNLT----NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTGENV  165 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i  165 (218)
                      ++++||.+++.+++.+..|+..+....    ..+.|+++|+||.|+.+ +.+..++++.+++.. +++|++|||++|.|+
T Consensus        82 ~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence            999999999999999999988776543    24789999999999954 568888999999875 689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1169         166 EQAFLETAKKIYQ  178 (218)
Q Consensus       166 ~~~~~~i~~~~~~  178 (218)
                      +++|++|++.+++
T Consensus       161 ~e~f~~l~~~il~  173 (174)
T d1wmsa_         161 AAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=200.71  Aligned_cols=164  Identities=25%  Similarity=0.366  Sum_probs=140.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcc---hhhhhhhhHhhhccCC
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG---QERFRAVTRSYYRGAA   89 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d   89 (218)
                      ..+||+++|++|+|||||+++|.+..+.. ...++.+.+.....+.+++..+.+.+||+++   ++++  +...+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            46899999999999999999999876543 3445666677778888899999999999764   4444  5677899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHHH
Q psy1169          90 GALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+...+.+..+++++++..++++|++|||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999988877643 358999999999999888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1169         169 FLETAKKIYQN  179 (218)
Q Consensus       169 ~~~i~~~~~~~  179 (218)
                      |..|++.+..+
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999988654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-33  Score=197.41  Aligned_cols=159  Identities=40%  Similarity=0.733  Sum_probs=143.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-hhHhhhccCCEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGAAGAL   92 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i   92 (218)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.........+......+.+||++|...+.. .+..+++.+|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999999999988888888888899999999999999887654 5678899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCC---CCCHHHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMT---GENVEQA  168 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~  168 (218)
                      +|||++++++|+.+..|+..+.... ..++|+++|+||.|+.+.+.+..++++++++.++++|+++||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999887654 46899999999999988888999999999999999999999987   4699999


Q ss_pred             HHHH
Q psy1169         169 FLET  172 (218)
Q Consensus       169 ~~~i  172 (218)
                      |.+|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-33  Score=200.67  Aligned_cols=166  Identities=36%  Similarity=0.615  Sum_probs=130.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +.+||+|+|++|||||||+++|.++.+...+.++.+.......... +...+.+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            4799999999999999999999999988888777766655555444 345578899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhhc----CCCCeEEEEeeCCCCCCCcc-ccHHHHHHHHHhC-CCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNLT----NPNTVIFLIGNKMDLEGSRD-VRYDEAKKFAEEN-DLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~  166 (218)
                      +|||++++.+|+.+..|+..+....    ...+|+++++||+|+.+.+. +..+++++++... .++|++|||++|.|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            9999999999999999998876543    24789999999999976543 6667888999886 4789999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      ++|++|++.++++
T Consensus       161 e~f~~l~~~~l~~  173 (175)
T d1ky3a_         161 TAFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.3e-33  Score=200.06  Aligned_cols=168  Identities=37%  Similarity=0.636  Sum_probs=148.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.+.........+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999999998888888888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCCCccccHHHHHHHHH-hCCCcEEEeccCCCCCHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTN----PNTVIFLIGNKMDLEGSRDVRYDEAKKFAE-ENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ||.++..+++.+..|+..+.....    ..+|+++|+||+|+.+ +.+..++...++. ..++++++|||++|.|++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999987765432    3689999999999865 4466677777765 468899999999999999999


Q ss_pred             HHHHHHHHHhhhcC
Q psy1169         170 LETAKKIYQNIKDG  183 (218)
Q Consensus       170 ~~i~~~~~~~~~~~  183 (218)
                      +++++.++++....
T Consensus       161 ~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         161 QTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccc
Confidence            99999998875533

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.8e-33  Score=198.65  Aligned_cols=163  Identities=27%  Similarity=0.458  Sum_probs=141.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|+.+.+...+.++..... ...+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999988888766444 44556788999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC------------CccccHHHHHHHHHhCC-CcEEEeccCC
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG------------SRDVRYDEAKKFAEEND-LIFVEASAMT  161 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S~~~  161 (218)
                      ||+++++||+.+..|+.........+.|+++|+||.|+..            .+.+..+++..+++..+ .+|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998876665555557899999999999853            35577888999998855 5799999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q psy1169         162 GE-NVEQAFLETAKKIYQ  178 (218)
Q Consensus       162 ~~-~i~~~~~~i~~~~~~  178 (218)
                      |. +++++|+.++..++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999988865

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-31  Score=190.41  Aligned_cols=162  Identities=20%  Similarity=0.324  Sum_probs=136.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|++..+... .++....+ .+.+.+++..+.+.+||++|+..+     .|++.+|++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            69999999999999999999999987543 44544444 566778999999999999998764     378899999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCCC--CccccHHHHHHHHHh-CCCcEEEeccCCCCCHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNLT---NPNTVIFLIGNKMDLEG--SRDVRYDEAKKFAEE-NDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~  168 (218)
                      ||+++++||+.+..|+..+....   ...+|+++|+||.|+..  .+.+..++++.++.. .+++|++|||+++.|++++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            99999999999999988876543   35789999999888743  466777888888755 6789999999999999999


Q ss_pred             HHHHHHHHHHhhhcC
Q psy1169         169 FLETAKKIYQNIKDG  183 (218)
Q Consensus       169 ~~~i~~~~~~~~~~~  183 (218)
                      |..+++.++...+++
T Consensus       158 F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         158 FQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999998876654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=4.5e-31  Score=186.86  Aligned_cols=157  Identities=19%  Similarity=0.355  Sum_probs=127.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|..+.+...+.+|.+.++.  .+..  ..+.+.+||++|++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeee--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            589999999999999999999999998888888776553  3333  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHH----HHhCCCcEEEeccCCCCCHHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKF----AEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ||+++..++.....|+..+... ..+++|+++|+||.|+.+..... +....+    +...+++++++||++|.|++++|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK-ELIEKMNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHH-HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHH-HHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            9999999999998887766543 33689999999999996543221 122222    22346679999999999999999


Q ss_pred             HHHHHHH
Q psy1169         170 LETAKKI  176 (218)
Q Consensus       170 ~~i~~~~  176 (218)
                      ++|++.+
T Consensus       157 ~~l~~~~  163 (164)
T d1zd9a1         157 QWLIQHS  163 (164)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHcc
Confidence            9998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=9.7e-30  Score=180.06  Aligned_cols=157  Identities=22%  Similarity=0.352  Sum_probs=122.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   94 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (218)
                      .+||+|+|++|||||||+++|.+..+ ....++.+....  .+.  ...+.+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK--TLE--HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE--EEE--ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee--ecc--ccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            58999999999999999999987765 345555554432  233  3457889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhh-hcCCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCHHHH
Q psy1169          95 YDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENVEQA  168 (218)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~  168 (218)
                      ||+++..++.....++..... ....+.|+++|+||.|+.+.....  +.....     ...+++++++||++|.|++++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN--AIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH--HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHH--HHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999999888776655433 334679999999999997654433  222221     223557999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         169 FLETAKKIYQ  178 (218)
Q Consensus       169 ~~~i~~~~~~  178 (218)
                      |++|++.+.+
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=4.3e-30  Score=183.73  Aligned_cols=161  Identities=22%  Similarity=0.311  Sum_probs=123.9

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhcc
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG   87 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (218)
                      ...+++..+||+|+|++|||||||+++|.+..+.... ++.+.  ....+..  ..+.+.+||++|.+.+...+..+++.
T Consensus         9 ~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~--~~~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~   83 (176)
T d1fzqa_           9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF--NIKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFEN   83 (176)
T ss_dssp             CSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE--EEEEEEE--TTEEEEEEECSSCGGGHHHHHHHHTT
T ss_pred             hhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee--eEEEecc--CCeeEeEeeccccccchhHHHHHhhc
Confidence            3455577899999999999999999999887764322 22222  2333333  34788999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHH-----HHHhCCCcEEEeccCC
Q psy1169          88 AAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKK-----FAEENDLIFVEASAMT  161 (218)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~~  161 (218)
                      +|++|+|||+++..+++.+..|+..+.... ..++|+++++||+|+......  ....+     .+....++++++||++
T Consensus        84 ~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~t  161 (176)
T d1fzqa_          84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALT  161 (176)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccH--HHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            999999999999999999988877655433 357899999999999755332  22222     1223456799999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKK  175 (218)
Q Consensus       162 ~~~i~~~~~~i~~~  175 (218)
                      |.|++++|++|++.
T Consensus       162 g~gv~e~~~~l~~~  175 (176)
T d1fzqa_         162 GEGVQDGMNWVCKN  175 (176)
T ss_dssp             CTTHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=3.2e-30  Score=185.44  Aligned_cols=162  Identities=23%  Similarity=0.351  Sum_probs=121.3

Q ss_pred             CcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCE
Q psy1169          11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (218)
Q Consensus        11 ~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (218)
                      .....+||+++|++|||||||+++|....+... .++.+...  .....  ..+.+.+||++|++.+...+..++..+++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNV--ETLSY--KNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCCE--EEEEE--TTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceEE--EEEee--CCEEEEEEecccccccchhHHhhhcccee
Confidence            456689999999999999999999977665432 23433332  22222  45788999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHH-----HHhCCCcEEEeccCCCCC
Q psy1169          91 ALMVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKF-----AEENDLIFVEASAMTGEN  164 (218)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~  164 (218)
                      +++|+|+++..++.....|+..+... ...+.|+++++||+|+.+...  ..++...     +...++.+++|||++|.|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC--HHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            99999999999999988887665443 335799999999999965422  2333222     233456799999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1169         165 VEQAFLETAKKIYQN  179 (218)
Q Consensus       165 i~~~~~~i~~~~~~~  179 (218)
                      ++++|++|++.+.++
T Consensus       166 v~e~~~~l~~~i~~~  180 (182)
T d1moza_         166 ITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=5.8e-29  Score=177.36  Aligned_cols=157  Identities=20%  Similarity=0.358  Sum_probs=119.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+++|++|||||||+++|..+.+... .++.+...    .......+.+.+||++|...+...+..+++.++++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            3469999999999999999999987665332 22222222    222234578899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHH-----HHHhCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKK-----FAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      +|+|+++..++..+..|+...... .....|+++++||+|+......  .++..     .+...++.++++||++|.|++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP--HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH--HHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            999999999999998887765543 3457999999999999654322  22222     222346679999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         167 QAFLETAKKI  176 (218)
Q Consensus       167 ~~~~~i~~~~  176 (218)
                      ++|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=2.4e-28  Score=171.61  Aligned_cols=156  Identities=17%  Similarity=0.302  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEE
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   95 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (218)
                      +||+|+|++|||||||+++|.++.+..........     ....+...+.+.+||++|...+......++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            69999999999999999999988876554433221     2234456688999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccc---cHHHHHHHHHhCCCcEEEeccCCCCCHHHHHHH
Q psy1169          96 DITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDV---RYDEAKKFAEENDLIFVEASAMTGENVEQAFLE  171 (218)
Q Consensus        96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~  171 (218)
                      |+.+..++..+..|+..+.... ....|+++++||.|+......   .......++...+++++++||++|.|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999988877665433 357899999999998654322   111122233445778999999999999999999


Q ss_pred             HHHHH
Q psy1169         172 TAKKI  176 (218)
Q Consensus       172 i~~~~  176 (218)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=6.2e-25  Score=156.65  Aligned_cols=157  Identities=24%  Similarity=0.349  Sum_probs=114.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      ...+||+|+|.+|||||||+++|.+.++..... +.+..  ....  ....+.+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~~~--~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSN--VEEI--VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCSS--CEEE--EETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-cccee--EEEE--eecceEEEEeccccccccccchhhhhccceeee
Confidence            456899999999999999999999887653221 11111  1111  123468889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCccccHHHHHHHH-----HhCCCcEEEeccCCCCCHH
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKNL-TNPNTVIFLIGNKMDLEGSRDVRYDEAKKFA-----EENDLIFVEASAMTGENVE  166 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~  166 (218)
                      +++|.++..++.....+....... ...+.|+++|+||.|+......  .+.....     ...+++++++||++|.|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV--AEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH--HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999998876655544332 2368999999999998655432  2222222     2345679999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         167 QAFLETAKKI  176 (218)
Q Consensus       167 ~~~~~i~~~~  176 (218)
                      ++|++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=3e-24  Score=151.56  Aligned_cols=160  Identities=19%  Similarity=0.304  Sum_probs=121.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      ..+||+++|.+|||||||+++|.++.+.... ++.+...  .....  ..+.+.+||.+|...+......++...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV--ETVTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE--EEEEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccceee--eeecc--CceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            4589999999999999999999998876533 3333222  22222  34678899999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHh-hhcCCCCeEEEEeeCCCCCCCccc---cHHHHHHHHHhCCCcEEEeccCCCCCHHHHH
Q psy1169          94 VYDITRRSTYNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLEGSRDV---RYDEAKKFAEENDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ++|+.+..++.....++.... .......|+++++||.|+......   .......++...+++++++||++|.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            999999888887777544433 333457899999999999654322   1112223344567789999999999999999


Q ss_pred             HHHHHHHHH
Q psy1169         170 LETAKKIYQ  178 (218)
Q Consensus       170 ~~i~~~~~~  178 (218)
                      ++|++.+.+
T Consensus       159 ~~l~~~l~~  167 (169)
T d1upta_         159 EWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.7e-24  Score=156.56  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=113.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+++|..|||||||+++|....++..     +.    ....++...+.+.+||++|++.+..++..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            368999999999999999999987766433     22    122333455788999999999999999999999999999


Q ss_pred             EEECCChhhH-----------HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC---------------ccccHHHHH---
Q psy1169          94 VYDITRRSTY-----------NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGS---------------RDVRYDEAK---  144 (218)
Q Consensus        94 v~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~---------------~~~~~~~~~---  144 (218)
                      |+|+++..++           +....|...+......+.|+++++||.|+...               ......++.   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999988765           23334544454445568999999999986211               111112211   


Q ss_pred             --HHHHh------CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         145 --KFAEE------NDLIFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       145 --~~~~~------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                        .+...      ..+++++|||+++.|++++|+.+.+.+++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              11111      23457799999999999999999888765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.4e-25  Score=159.82  Aligned_cols=160  Identities=17%  Similarity=0.139  Sum_probs=122.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+++|..|||||||+++|..+.+.  +.||.+.+...    +....+.+.+||++|++.+...+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeE
Confidence            3689999999999999999999888763  56788766432    33456788999999999999999999999999999


Q ss_pred             EEECCChh-----------hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc----------------cccHHHHHHH
Q psy1169          94 VYDITRRS-----------TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR----------------DVRYDEAKKF  146 (218)
Q Consensus        94 v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------------~~~~~~~~~~  146 (218)
                      ++|.++..           .++.+..|...+......+.|+++++||.|+...+                .........+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998854           35556667776666655789999999999973211                1122222222


Q ss_pred             HH----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         147 AE----------ENDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       147 ~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      ..          ...+.+++|||+++.|++++|+.+.+.+++.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            21          1234578999999999999999998888753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4e-23  Score=145.06  Aligned_cols=151  Identities=18%  Similarity=0.256  Sum_probs=115.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   96 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (218)
                      ||+++|++|||||||+++|.++.+.. ..++.+....    ......+.+.+||+.|...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            89999999999999999999988653 3444443322    233344677899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCccccHHHHHHHH------------HhCCCcEEEeccCCCC
Q psy1169          97 ITRRSTYNHLSSWLTDTKNLT-NPNTVIFLIGNKMDLEGSRDVRYDEAKKFA------------EENDLIFVEASAMTGE  163 (218)
Q Consensus        97 ~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~S~~~~~  163 (218)
                      .++..++.....|+....... ..+.|++++++|.|+....  ...+..+..            ....+.++++||++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999999888877766655433 3578999999999986432  223322222            1223468999999999


Q ss_pred             CHHHHHHHHHH
Q psy1169         164 NVEQAFLETAK  174 (218)
Q Consensus       164 ~i~~~~~~i~~  174 (218)
                      |++++|++|.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.8e-23  Score=149.24  Aligned_cols=157  Identities=20%  Similarity=0.170  Sum_probs=105.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------hhhhhHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRS   83 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   83 (218)
                      .+.-.|+|+|.+|||||||+++|++...... ..+..+...........  ...+.+|||||...        +......
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--eeeeeecccccccccccccchhccccccc
Confidence            3455799999999999999999998764322 12222222222233333  34678999999632        2333445


Q ss_pred             hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhC-CCcEEEeccCCC
Q psy1169          84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEN-DLIFVEASAMTG  162 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~  162 (218)
                      +++.+|++|+|+|++++..... ..|...+... ..+.|+++|+||+|+....+   +....+.... ...++++||+++
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALDE  155 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTTCH
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccCHH---HHHHHHHhhcccCceEEEecCCC
Confidence            6789999999999998755433 3344444433 35789999999999865432   2334444443 356899999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKI  176 (218)
Q Consensus       163 ~~i~~~~~~i~~~~  176 (218)
                      .|+++++++|++.+
T Consensus       156 ~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         156 RQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999998887544

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.4e-23  Score=145.37  Aligned_cols=150  Identities=23%  Similarity=0.227  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh--------hhhhHhhhc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--------RAVTRSYYR   86 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~   86 (218)
                      +||+++|.+|||||||+++|++..... ...+..........+...+  ..+.+||++|....        ......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999776542 2222222222233333443  46778999994321        123445678


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      .+|++++++|..+..+++....|...+... ..+.|+++|+||+|+.......       ....+.+++++||+++.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            999999999999988877776665555443 3579999999999986543221       12356789999999999999


Q ss_pred             HHHHHHHHH
Q psy1169         167 QAFLETAKK  175 (218)
Q Consensus       167 ~~~~~i~~~  175 (218)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=1.2e-22  Score=145.19  Aligned_cols=158  Identities=16%  Similarity=0.069  Sum_probs=105.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh-------hhhhhHhhhccCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------FRAVTRSYYRGAA   89 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d   89 (218)
                      .|+++|.+|||||||+|+|++...........+.+...... .......+.+||+||...       ........+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            58999999999999999998765433332333333323222 333445678999999432       1112334567899


Q ss_pred             EEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169          90 GALMVYDITRR--STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus        90 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      ++++++|....  ..+.....|+...... ..+.|+++|+||+|+......  +...+.....+.+++++||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998764  2333333333322211 135789999999999654332  345555566788999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1169         168 AFLETAKKIYQ  178 (218)
Q Consensus       168 ~~~~i~~~~~~  178 (218)
                      +++.|.+.+.+
T Consensus       159 L~~~i~~~l~~  169 (180)
T d1udxa2         159 LKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99988777643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=8e-23  Score=148.34  Aligned_cols=159  Identities=19%  Similarity=0.219  Sum_probs=108.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEE
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (218)
                      +.+||+++|++|||||||+++|.   +...+.||.+....  .  ++...+.+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~--~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--D--FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--E--EEETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--E--EeeeeeeeeeecccceeeecccccccccccceeEE
Confidence            36899999999999999999994   44566778776543  2  33355778899999999999999999999999999


Q ss_pred             EEECCChhh----------HHHHHHHHHHHh-hhcCCCCeEEEEeeCCCCCCC----------------ccccHHHHHHH
Q psy1169          94 VYDITRRST----------YNHLSSWLTDTK-NLTNPNTVIFLIGNKMDLEGS----------------RDVRYDEAKKF  146 (218)
Q Consensus        94 v~d~~~~~s----------~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~----------------~~~~~~~~~~~  146 (218)
                      ++|.++..+          ++....++..+. .....++|+++++||.|+...                .....+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999988543          333344444433 333468999999999997321                01122333333


Q ss_pred             HHh-----------CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         147 AEE-----------NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       147 ~~~-----------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                      ...           ..+.+++|||+++.||+++|+.+.+.+++.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            221           134567899999999999999998887654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.88  E-value=4e-22  Score=142.61  Aligned_cols=157  Identities=18%  Similarity=0.247  Sum_probs=110.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (218)
                      +..+||+++|++|||||||+++|.+..+.... ++.....  ..+..++  ..+.+||+.+...+......+.+..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            45689999999999999999999888765433 3333332  2233443  45678999999988888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhh-hcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----------------CCCcE
Q psy1169          93 MVYDITRRSTYNHLSSWLTDTKN-LTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----------------NDLIF  154 (218)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  154 (218)
                      +++|+.+...+.....++..... ....+.|+++++||.|+....  ...++......                 ..+.+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI--SEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC--CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC--CHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888777665444333 334679999999999986542  23333333321                 13458


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q psy1169         155 VEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       155 ~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ++|||++|.|++++|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=1.1e-21  Score=139.86  Aligned_cols=161  Identities=16%  Similarity=0.107  Sum_probs=105.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcee-----eeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccC
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIG-----VEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA   88 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (218)
                      ..++|+++|.+++|||||+|+|++.........+..     .........+......+.++|++|+..+.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            457999999999999999999986432222111111     111011111111235677999999999988888899999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHHHHHHHHh----CCCcEEEeccCCC
Q psy1169          89 AGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDEAKKFAEE----NDLIFVEASAMTG  162 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~----~~~~~~~~S~~~~  162 (218)
                      |++++++|+.+....+....| ..+..   .++|+++|+||+|+.......  .+..+.+...    .+.+++++||++|
T Consensus        84 d~~ilv~d~~~g~~~~~~~~~-~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g  159 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQTGEHM-LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTG  159 (179)
T ss_dssp             CEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTC
T ss_pred             cccccccccccccchhhhhhh-hhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCC
Confidence            999999999987654443322 22322   478999999999986543221  1222233322    2457999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKIYQ  178 (218)
Q Consensus       163 ~~i~~~~~~i~~~~~~  178 (218)
                      .|++++++.|++.+-+
T Consensus       160 ~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         160 FGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCCc
Confidence            9999999998877643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1e-21  Score=139.13  Aligned_cols=155  Identities=19%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchh---------hhhhhhHhhhc
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRSYYR   86 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~   86 (218)
                      .|+|+|++|||||||+++|++..... ...+..+.......  +......+.+||++|..         .+......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDT--VEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEE--EEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccc--ccccccccccccccceeeeeccccccccccccccccc
Confidence            69999999999999999998755432 11111111111222  22344567899999942         12334455678


Q ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169          87 GAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      .+|+++++.|.+.....+. ..++..+..   .+.|+++|+||+|+...  ...+...++.......++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~---~~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRK---STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHH---HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-ccccccccc---ccccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            9999999999887655433 234444443   35789999999998532  22222333333444567999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1169         167 QAFLETAKKIYQN  179 (218)
Q Consensus       167 ~~~~~i~~~~~~~  179 (218)
                      +++++|.+.+.+.
T Consensus       154 ~L~~~i~~~l~e~  166 (171)
T d1mkya1         154 TMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999887664

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=1.5e-20  Score=134.75  Aligned_cols=162  Identities=22%  Similarity=0.147  Sum_probs=105.1

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh------------
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER------------   76 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------   76 (218)
                      +.....+||+|+|.+|||||||+++|++..... ...+..........+.+++  ..+.++|++|...            
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccc
Confidence            445567999999999999999999999765421 1112222222222333444  3567889998542            


Q ss_pred             hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh-----CC
Q psy1169          77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE-----ND  151 (218)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~  151 (218)
                      ........++.+|++++|+|+......+. ..++..+..   .+.|+++++||+|+....+....+..+....     ..
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             hhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence            22234556788999999999987644322 233333333   4689999999999876655444443333322     24


Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy1169         152 LIFVEASAMTGENVEQAFLETAKKIY  177 (218)
Q Consensus       152 ~~~~~~S~~~~~~i~~~~~~i~~~~~  177 (218)
                      .+++++||++|.|++++++.|.+.+.
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999965543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=4e-21  Score=137.47  Aligned_cols=153  Identities=19%  Similarity=0.129  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh---------------hhhhhh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------------RFRAVT   81 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------------~~~~~~   81 (218)
                      .|+++|.+|||||||+|+|.+........+..+.+  ...+...    .+.+||+||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--ccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            58999999999999999999876543333322222  2222222    35689999941               112233


Q ss_pred             HhhhccCCEEEEEEECCChhhHHHHH----------HHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh--
Q psy1169          82 RSYYRGAAGALMVYDITRRSTYNHLS----------SWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE--  149 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--  149 (218)
                      ...++.+|++++|+|...........          .+++.+.   ..+.|+++|+||+|+....+............  
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~  152 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL  152 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhHHHHHHHHHHHhcccc
Confidence            44567899999999997653322211          1222222   24789999999999865543222222111111  


Q ss_pred             --CCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy1169         150 --NDLIFVEASAMTGENVEQAFLETAKKIYQ  178 (218)
Q Consensus       150 --~~~~~~~~S~~~~~~i~~~~~~i~~~~~~  178 (218)
                        ....++++||++|.|++++++.|.+.+.+
T Consensus       153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         153 SEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence              12238899999999999999999887765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=2.6e-21  Score=135.41  Aligned_cols=149  Identities=23%  Similarity=0.222  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh--------h-hhhhHhhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------F-RAVTRSYY   85 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~-~~~~~~~~   85 (218)
                      +||+++|.+|||||||+|+|++..... ...+..........+...+  ..+.+||+||...        . .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999998765322 2222222222233333443  5677999999421        1 11233346


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCH
Q psy1169          86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENV  165 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i  165 (218)
                      ..+|++++|+|++++...+...-+. .+     ...++++++||.|+.....  .++... ....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~~~--~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEKIN--EEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCCCC--HHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccchhh--hHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            7899999999999987765443221 12     3567899999999965432  233222 2235678999999999999


Q ss_pred             HHHHHHHHHH
Q psy1169         166 EQAFLETAKK  175 (218)
Q Consensus       166 ~~~~~~i~~~  175 (218)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=1.6e-21  Score=143.56  Aligned_cols=160  Identities=19%  Similarity=0.206  Sum_probs=112.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (218)
                      ++...||+++|+.|||||||++++....+    .+|.+...  ..+.++  .+.+.+||++|++.++..+..+++.++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEEC--cEEEEEEecCccceeccchhhhcccccce
Confidence            56789999999999999999999976544    35666543  333343  47889999999999999999999999999


Q ss_pred             EEEEECCChhh----------H-HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcc-----------------------
Q psy1169          92 LMVYDITRRST----------Y-NHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRD-----------------------  137 (218)
Q Consensus        92 i~v~d~~~~~s----------~-~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------------------  137 (218)
                      ++++|.++...          + +....|...+....-.++|++|++||+|+.+.+.                       
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~  154 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDA  154 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTC
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccc
Confidence            99999987432          2 2223333333333335799999999999832210                       


Q ss_pred             -------ccHHHHHHHH-----Hh--------CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy1169         138 -------VRYDEAKKFA-----EE--------NDLIFVEASAMTGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       138 -------~~~~~~~~~~-----~~--------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~  179 (218)
                             ....++..+.     ..        ..+..++|||.+..+++.+|+.+.+.|++.
T Consensus       155 ~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         155 TPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                   0112222222     11        123356899999999999999988777664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=6.4e-20  Score=133.64  Aligned_cols=119  Identities=14%  Similarity=0.222  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh-hhhHhhhccCCEEEEEE
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAAGALMVY   95 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~   95 (218)
                      +|+|+|++|||||||+++|++..+.... ++.+.+.....+ .....+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6899999999999999999998876543 444444433322 24456789999999998775 46778889999999999


Q ss_pred             ECCChhhH-HHHHHHHHHHh-h--hcCCCCeEEEEeeCCCCCCCcc
Q psy1169          96 DITRRSTY-NHLSSWLTDTK-N--LTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        96 d~~~~~s~-~~~~~~~~~~~-~--~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      |+++..++ .....++..+. .  .....+|++|++||+|+...+.
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            99997664 44444443332 1  2235689999999999976543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=6.1e-21  Score=140.97  Aligned_cols=160  Identities=21%  Similarity=0.223  Sum_probs=103.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE----------------EECCeEEEEEEeeCcchhhhhhhh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII----------------EVHGEKIKLQIWDTAGQERFRAVT   81 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~~~~~   81 (218)
                      |+|+|.+++|||||+++|++....................                .++.....+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998643221111111111001111                112234578899999999988877


Q ss_pred             HhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--------------------H
Q psy1169          82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--------------------D  141 (218)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------------------~  141 (218)
                      ...+..+|++|+|+|+.+.-..+.... +..+..   .+.|+++++||+|+........                    .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQEA-LNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHHHH-HHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchhHH-HHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            778899999999999988655444322 233332   5689999999999864321100                    0


Q ss_pred             HH----HHHHHh--------------CCCcEEEeccCCCCCHHHHHHHHHHHHHHhhh
Q psy1169         142 EA----KKFAEE--------------NDLIFVEASAMTGENVEQAFLETAKKIYQNIK  181 (218)
Q Consensus       142 ~~----~~~~~~--------------~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~  181 (218)
                      ..    ..+...              ...+++++||++|.|++++++.|.+.+.+.+.
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            01    111111              12468999999999999999998887755443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=4.4e-21  Score=137.46  Aligned_cols=156  Identities=19%  Similarity=0.163  Sum_probs=97.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh----h---hHhhhccC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----V---TRSYYRGA   88 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~   88 (218)
                      .+|+|+|.+|||||||+|+|.+........+..+.+.......+.+ ...+.+|||||......    +   ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            4699999999999999999987654333222323333233333322 22567999999632111    1   22334678


Q ss_pred             CEEEEEEECCChhhHHHHHH-----HHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHh--CCCcEEEeccCC
Q psy1169          89 AGALMVYDITRRSTYNHLSS-----WLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEE--NDLIFVEASAMT  161 (218)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~-----~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~  161 (218)
                      +.++++++............     ...........+.|+++|+||+|+....    +....+...  .+.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCC
Confidence            88888887765433222111     1111222222468999999999996543    222333332  467899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy1169         162 GENVEQAFLETAKKI  176 (218)
Q Consensus       162 ~~~i~~~~~~i~~~~  176 (218)
                      |.|++++++.|.+.+
T Consensus       157 g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         157 REGLRELLFEVANQL  171 (185)
T ss_dssp             SSTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999888776

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=1.6e-19  Score=130.29  Aligned_cols=160  Identities=13%  Similarity=0.124  Sum_probs=94.1

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh----------hh--
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RF--   77 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~--   77 (218)
                      .|.....+|+|+|.+|||||||+|+|++...........+............   .+.+.|+++..          ..  
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhh
Confidence            3455566999999999999999999987543222222222221122222222   22234554411          11  


Q ss_pred             -hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccH--HHHHHHH-HhCCCc
Q psy1169          78 -RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRY--DEAKKFA-EENDLI  153 (218)
Q Consensus        78 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~-~~~~~~  153 (218)
                       ..........+|++++++|+..+...+. ..+++.+..   .+.|+++|+||+|+........  +..++.. ...+.+
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~  170 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred             HHhhhhccccchhhhhhhhhccccccccc-ccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCC
Confidence             1122334557799999999987644222 234444443   4689999999999865443321  1122222 235667


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q psy1169         154 FVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       154 ~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ++++||+++.|+++++++|.+.+
T Consensus       171 ~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998775

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.83  E-value=1.4e-19  Score=130.63  Aligned_cols=162  Identities=17%  Similarity=0.196  Sum_probs=106.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----CceeeeEEEEEEE-------------------ECCeEEEEE
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-----HTIGVEFGTRIIE-------------------VHGEKIKLQ   67 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-----~~~~~~~~~~~~~-------------------~~~~~~~~~   67 (218)
                      ++..++|+++|..++|||||+++|++........     .+....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4677899999999999999999998643221110     1111111111111                   011245688


Q ss_pred             EeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccc--cHHHHHH
Q psy1169          68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDV--RYDEAKK  145 (218)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~  145 (218)
                      ++|+||+..|.......+..+|++++++|+.+....+...+.+..+....  ..+++++.||+|+.+....  .......
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999999888888899999999999998743333333333333322  2457888999998654322  1233444


Q ss_pred             HHHh---CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy1169         146 FAEE---NDLIFVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       146 ~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      +...   .+++++++||++|.|++++++.+.+.
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4443   24679999999999999988777654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=6.9e-19  Score=127.86  Aligned_cols=162  Identities=15%  Similarity=0.182  Sum_probs=102.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCcee--eeEEEEEEEE------------------------CCeE
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---CPHTIG--VEFGTRIIEV------------------------HGEK   63 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~---~~~~~~--~~~~~~~~~~------------------------~~~~   63 (218)
                      +..++|+++|..++|||||+++|++......   ......  .......+..                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            3447999999999999999999986322111   000000  0000111100                        0123


Q ss_pred             EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HH
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YD  141 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~  141 (218)
                      ..+.++|+||+..|.......+..+|++|+|+|+.+.-......+.+..+...  ...|++|++||+|+.......  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHHH
Confidence            46889999999999887788888999999999998863222222222222221  124788999999997543221  12


Q ss_pred             HHHHHHHh---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         142 EAKKFAEE---NDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       142 ~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      ....+...   .+++++++||++|.|++++++.+.+.+
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            23333332   256799999999999999988777643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=1.6e-19  Score=129.84  Aligned_cols=156  Identities=13%  Similarity=0.110  Sum_probs=104.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC----------------CCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQ----------------KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF   77 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (218)
                      ..++|+++|..++|||||+++|+..                ....+.....+.+  .....+......+.++|+||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~--~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN--AAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEE--CEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCC--cceEEEEeceeeEEeecCcchHHH
Confidence            3589999999999999999999741                1111222223333  333334444457788999999999


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc---HHHHHHHHHhC----
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR---YDEAKKFAEEN----  150 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~----  150 (218)
                      .......+..+|++|+|+|+.+...-|..+.|.. +...  ...|++++.||+|+....+..   ..+++.+....    
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~-a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLL-ARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHH-HHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            8888888899999999999999766554444332 2221  235688999999986543321   12344444433    


Q ss_pred             -CCcEEEeccCCC----------CCHHHHHHHHHH
Q psy1169         151 -DLIFVEASAMTG----------ENVEQAFLETAK  174 (218)
Q Consensus       151 -~~~~~~~S~~~~----------~~i~~~~~~i~~  174 (218)
                       .++++++|+++|          .++.++++.+.+
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence             367999999987          367776665544

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=4.7e-18  Score=120.71  Aligned_cols=158  Identities=23%  Similarity=0.176  Sum_probs=97.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhh---------hhHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA---------VTRS   83 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   83 (218)
                      .+.-.|+|+|.+|||||||+|+|.+...........+.+.........+. ..+..||++|......         ....
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC-ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            45567999999999999999999986544222222222222222222222 2445678877432211         1122


Q ss_pred             hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCC-CcEEEeccCCC
Q psy1169          84 YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEEND-LIFVEASAMTG  162 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~  162 (218)
                      ....+++++++.|..+.....  ..+...+.   ....|.++++||.|....+.........+....+ .+++++||++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDD--EMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHH--HHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccchhH--HHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            234567778888877654322  22222222   2467889999999987665444455555555544 57999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy1169         163 ENVEQAFLETAKKI  176 (218)
Q Consensus       163 ~~i~~~~~~i~~~~  176 (218)
                      .|++++++.|.+.+
T Consensus       157 ~gi~~L~~~i~~~l  170 (179)
T d1egaa1         157 LNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999888776543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.75  E-value=2.4e-17  Score=120.56  Aligned_cols=151  Identities=23%  Similarity=0.282  Sum_probs=100.3

Q ss_pred             CCcceeeEEEEEcCCCCCHHHHHHHHHhC--CCCC-------------------------------CCCCceeeeEEEEE
Q psy1169          10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMP-------------------------------DCPHTIGVEFGTRI   56 (218)
Q Consensus        10 ~~~~~~~ki~v~G~~g~GKStli~~l~~~--~~~~-------------------------------~~~~~~~~~~~~~~   56 (218)
                      -..+..+||+++|..++|||||+.+|+..  ....                               +.....+.+.....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            34568899999999999999999999732  1110                               00011122222222


Q ss_pred             EEECCeEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCC
Q psy1169          57 IEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGS  135 (218)
Q Consensus        57 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~  135 (218)
                      +.  .....+.|+|+||+..|-......+..+|++|+|+|+.+...-+....+. .+..   .+++ ++++.||+|+.+.
T Consensus        84 ~~--~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~-~~~~---~gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 FS--TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IASL---LGIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EE--CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEEECTTTTTS
T ss_pred             Ee--ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH-HHHH---cCCCEEEEEEEccccccc
Confidence            22  23356788999999999988888899999999999999876655554433 2222   3444 8889999999765


Q ss_pred             ccccHH----HHHHHHHhCC-----CcEEEeccCCCCCHH
Q psy1169         136 RDVRYD----EAKKFAEEND-----LIFVEASAMTGENVE  166 (218)
Q Consensus       136 ~~~~~~----~~~~~~~~~~-----~~~~~~S~~~~~~i~  166 (218)
                      .+..++    +...++...+     ++++++||++|.|+.
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            433222    2344454433     358999999999884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=6.6e-18  Score=122.27  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=94.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCC--------CC---------CCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQK--------FM---------PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER   76 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (218)
                      +.++|+++|..++|||||+++|+...        ..         ++..+..+.+.....+..  ....+.|+||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~--~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--AKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC--SSCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe--CCeEEEEEeCCCchh
Confidence            35899999999999999999997310        00         000011223333333333  445677899999999


Q ss_pred             hhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCCCcccc---HHHHHHHHHhC--
Q psy1169          77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEGSRDVR---YDEAKKFAEEN--  150 (218)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~--  150 (218)
                      |.......+..+|++|+|+|+.+....+..+.|.. +..   .++| +++++||+|+.+..+..   ..+++.+....  
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            99888888999999999999999877766555432 222   3565 77789999986543221   12334444433  


Q ss_pred             ---CCcEEEeccCC
Q psy1169         151 ---DLIFVEASAMT  161 (218)
Q Consensus       151 ---~~~~~~~S~~~  161 (218)
                         .++++..|+..
T Consensus       156 ~~~~i~~i~~sa~~  169 (204)
T d2c78a3         156 PGDEVPVIRGSALL  169 (204)
T ss_dssp             CTTTSCEEECCHHH
T ss_pred             Ccccceeeeeechh
Confidence               34588888763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.5e-17  Score=120.83  Aligned_cols=117  Identities=21%  Similarity=0.240  Sum_probs=80.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhhhhhHhh----hccCC
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY----YRGAA   89 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d   89 (218)
                      +...|+|+|++|||||||+|+|.+..+.+.    .+......  .+......+.+||+||++.+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLS--AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEE--ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceEE--EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            456899999999999999999998776432    22222122  234445567899999988765544443    45568


Q ss_pred             EEEEEEECCC-hhhHHHHHHHHH----HHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          90 GALMVYDITR-RSTYNHLSSWLT----DTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        90 ~~i~v~d~~~-~~s~~~~~~~~~----~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      .+++++|+.+ ..++.....|+.    .+......+.|+++++||+|+....
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8888888765 455555555543    3344455789999999999997654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=9.7e-17  Score=114.36  Aligned_cols=164  Identities=15%  Similarity=0.121  Sum_probs=86.7

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh-------hhhhh
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-------RFRAV   80 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~   80 (218)
                      .+.|.+..++|+++|.+|||||||+|+|.+...........+................+..++.++..       .....
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            34467788999999999999999999998766543332222222222222222222233222322211       11111


Q ss_pred             hH---hhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHHHHHHHHh--CCCc
Q psy1169          81 TR---SYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDEAKKFAEE--NDLI  153 (218)
Q Consensus        81 ~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~--~~~~  153 (218)
                      ..   ......+.++.+.+.......... .++..+..   ...++++++||.|+.......  .+...+....  ...+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhHHH-HHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence            11   122334455666666665443332 33333333   457889999999986543221  1222222222  2456


Q ss_pred             EEEeccCCCCCHHHHHHHHHHH
Q psy1169         154 FVEASAMTGENVEQAFLETAKK  175 (218)
Q Consensus       154 ~~~~S~~~~~~i~~~~~~i~~~  175 (218)
                      ++++||++|.|++++++.|.+.
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999887654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.62  E-value=2.8e-15  Score=111.96  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCC------------------CCCceeeeEEEEEEEECCeEEEEEEeeCcchhhh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPD------------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF   77 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (218)
                      =+|+|+|+.++|||||+.+|+...-...                  .....+.......+.+++  ..+.++||||+.+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            3699999999999999999974221100                  011123333334444544  46778999999999


Q ss_pred             hhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q psy1169          78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLE  133 (218)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  133 (218)
                      .......++.+|++|+|+|+.+....+....|. .+..   .++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh---ccccccccccccccc
Confidence            998899999999999999999987766665553 3333   478999999999963

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=1.1e-14  Score=108.92  Aligned_cols=114  Identities=16%  Similarity=0.203  Sum_probs=81.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC--CCC----------------CCCCCceeeeEEEEEEEECCeEEEEEEeeCcch
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFM----------------PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ   74 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (218)
                      .+.-+|+++|..|+|||||+.+++..  ...                .+..+..++......+.++  ...++|+||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~--~~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEET--TEEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccC--CeEEEEecCCch
Confidence            34457999999999999999999732  111                1111122233333334444  456788999999


Q ss_pred             hhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      ..|.......+..+|+.|+|+|+.+.-..+...-|. ....   .++|.++++||+|.
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~-~a~~---~~lP~i~fINKmDr  135 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKMDK  135 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHH-HHHT---TTCCEEEEEECTTS
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHH-HHHH---cCCCEEEEEecccc
Confidence            999998899999999999999999987766655553 3332   58999999999997

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=7.5e-16  Score=113.72  Aligned_cols=148  Identities=18%  Similarity=0.183  Sum_probs=97.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeeEEEEEEEECCe
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-----------------------------DCPHTIGVEFGTRIIEVHGE   62 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   62 (218)
                      ..++|+++|..++|||||+.+|+.  +....                             +..+..+.+.....+..+  
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--   82 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--   82 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS--
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC--
Confidence            348999999999999999999963  11100                             111123333333444443  


Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhh-------HHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST-------YNHLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG  134 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~  134 (218)
                      ...+.|+|+||+..|.......+..+|++|+|+|+.....       .|....|+ .+..   .++| +++++||+|+.+
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~---~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT---LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH---TTCCEEEEEEECGGGGT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHH---cCCCeEEEEEECCCCCC
Confidence            4678899999999999888889999999999999987632       12333332 2222   3455 788999999876


Q ss_pred             CccccHH----HHHHHHHhC-----CCcEEEeccCCCCCHHH
Q psy1169         135 SRDVRYD----EAKKFAEEN-----DLIFVEASAMTGENVEQ  167 (218)
Q Consensus       135 ~~~~~~~----~~~~~~~~~-----~~~~~~~S~~~~~~i~~  167 (218)
                      .....++    +...+....     .++++++|+..|.|+.+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            4433222    233344332     35689999999988753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=3e-15  Score=110.97  Aligned_cols=152  Identities=20%  Similarity=0.239  Sum_probs=82.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCceeeeEEEEEEEECC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FM-----------------------------PDCPHTIGVEFGTRIIEVHG   61 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~   61 (218)
                      +..++|+++|..++|||||+.+|+...  ..                             .+.......+.....  ...
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~--~~~   99 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY--FET   99 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE--EEC
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc--ccc
Confidence            456799999999999999999995311  00                             000001111111111  122


Q ss_pred             eEEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHH------HHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q psy1169          62 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN------HLSSWLTDTKNLTNPNTV-IFLIGNKMDLEG  134 (218)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~  134 (218)
                      ....+.++|+||+..|..........+|++|+|+|+.+...-+      ...+.+..+..   .+++ +++++||+|+..
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTT
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCCc
Confidence            3356889999999999988888899999999999998853211      12222222222   2444 789999999864


Q ss_pred             Cc--cccHHH----HHHHHHh-------CCCcEEEeccCCCCCHHHHH
Q psy1169         135 SR--DVRYDE----AKKFAEE-------NDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       135 ~~--~~~~~~----~~~~~~~-------~~~~~~~~S~~~~~~i~~~~  169 (218)
                      ..  +..+++    ...+...       ..++++++||++|.|+.+++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            32  111222    2222222       13569999999999997654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.59  E-value=3.1e-15  Score=109.71  Aligned_cols=148  Identities=22%  Similarity=0.320  Sum_probs=91.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--C-----------------------------CCCCCCceeeeEEEEEEEECCeE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQK--F-----------------------------MPDCPHTIGVEFGTRIIEVHGEK   63 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (218)
                      .++|+|+|..++|||||+.+|+...  .                             ..+.....+..  .....++...
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~--~~~~~~~~~~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTIN--LTFMRFETKK   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECSS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCcccc--ceEEEEecCC
Confidence            5799999999999999999986310  0                             00111112222  2222233445


Q ss_pred             EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHH------HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc-
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN------HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR-  136 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-  136 (218)
                      +.+.|+|+||+..|.......+.-+|++|+|+|+.+...-+      ...+-+..... . ...+++++.||+|+.... 
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~-~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-M-GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-T-TCTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-h-CCCceEEEEEcccCCCccc
Confidence            67889999999999999999999999999999999863221      11111111111 1 224578899999986421 


Q ss_pred             -cccH----HHHHHHHHh-----CCCcEEEeccCCCCCHH
Q psy1169         137 -DVRY----DEAKKFAEE-----NDLIFVEASAMTGENVE  166 (218)
Q Consensus       137 -~~~~----~~~~~~~~~-----~~~~~~~~S~~~~~~i~  166 (218)
                       ....    .++..+...     ..++++++||..|.|+.
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence             1111    223333333     24568999999999885

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=6.8e-14  Score=107.77  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=82.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh--CCC--------------CCCCCCceeeeEEEEEEEE--------------CCe
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE--QKF--------------MPDCPHTIGVEFGTRIIEV--------------HGE   62 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~--~~~--------------~~~~~~~~~~~~~~~~~~~--------------~~~   62 (218)
                      ++.-+|+|+|..++|||||+.+|+.  +..              ..+..+..+.......+.+              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            3444699999999999999999973  111              1111112222222222222              235


Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      .+.+.|+||||+..|.......++-+|++|+|+|+.+.-..+...-|.....    .+.|+++++||+|.
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr  160 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECccc
Confidence            6789999999999999989999999999999999999877766655544332    57999999999995

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.49  E-value=1.2e-13  Score=103.07  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=74.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCeEEEEEEeeCcchhhh-------hhhhHh-
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-------RAVTRS-   83 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~-   83 (218)
                      ...++|+++|.+|+|||||+|.|++........ +..+.+.........+  ..+.+|||||....       ...... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            467999999999999999999999876543322 1222222233334444  46789999995321       111111 


Q ss_pred             -hhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCC--CCeEEEEeeCCCCCCCcccc
Q psy1169          84 -YYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNP--NTVIFLIGNKMDLEGSRDVR  139 (218)
Q Consensus        84 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~Dl~~~~~~~  139 (218)
                       .....++++||++++...--..-...+..+....+.  -.++++|+||.|........
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence             234668889999887642111112222223322222  24689999999987654443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.5e-13  Score=107.43  Aligned_cols=157  Identities=9%  Similarity=0.112  Sum_probs=88.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc---eeeeEEEEEEEECCeEEEEEEeeCcchhhhhh-----hhHhhh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT---IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-----VTRSYY   85 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~   85 (218)
                      ..++|+|+|.+|+|||||+|.|++..........   .+.+.....+... ..-.+.+|||||......     +....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4689999999999999999999975543221111   1111111222222 222467999999654222     223335


Q ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC-------CccccH----HHHH----HHHHhC
Q psy1169          86 RGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG-------SRDVRY----DEAK----KFAEEN  150 (218)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-------~~~~~~----~~~~----~~~~~~  150 (218)
                      ..+|++|++.|..-.+.  +. .+++.+..   .+.|+++|.||+|...       ......    +..+    ......
T Consensus       134 ~~~d~~l~~~~~~~~~~--d~-~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN--DI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHH--HH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHH--HH-HHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            67888888877543322  21 23333433   4689999999999521       111111    1111    112222


Q ss_pred             ---CCcEEEeccCCC--CCHHHHHHHHHHHHH
Q psy1169         151 ---DLIFVEASAMTG--ENVEQAFLETAKKIY  177 (218)
Q Consensus       151 ---~~~~~~~S~~~~--~~i~~~~~~i~~~~~  177 (218)
                         ..+++.+|..+.  .++.++.+.+.+.+-
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence               334788887653  578888877776653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.37  E-value=2.5e-13  Score=100.32  Aligned_cols=113  Identities=15%  Similarity=-0.039  Sum_probs=66.0

Q ss_pred             EEEEEeeCcchhhhhhhhHh---hh--ccCCEEEEEEECCChhhHHHHHHH-HHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169          64 IKLQIWDTAGQERFRAVTRS---YY--RGAAGALMVYDITRRSTYNHLSSW-LTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      ..+.++|+||+..+......   ..  ...+.+++++|+......+..... +........-..|.++++||.|+.....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~  174 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE  174 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence            35778899998765432221   11  245678999998654332222211 1111111113688999999999865422


Q ss_pred             ccHHH-----------------------HHH---HHH--hCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy1169         138 VRYDE-----------------------AKK---FAE--ENDLIFVEASAMTGENVEQAFLETAKKI  176 (218)
Q Consensus       138 ~~~~~-----------------------~~~---~~~--~~~~~~~~~S~~~~~~i~~~~~~i~~~~  176 (218)
                      .....                       ...   ...  ...++++++||++|.|++++++.|.+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            11000                       000   011  1457899999999999999998877653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.5e-12  Score=99.92  Aligned_cols=107  Identities=11%  Similarity=0.030  Sum_probs=63.4

Q ss_pred             EEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCcccc--HHH
Q psy1169          65 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVR--YDE  142 (218)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~  142 (218)
                      .+.|++|.|.....   ..+...+|.+++|.+.......+.....+-.+.        =++|+||+|+.......  ..+
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~a--------Di~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEVA--------DLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHHC--------SEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhccc--------cEEEEEeecccchHHHHHHHHH
Confidence            45667777743322   235567999999988777666555544433222        27889999986532221  111


Q ss_pred             HHHHHH-------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhc
Q psy1169         143 AKKFAE-------ENDLIFVEASAMTGENVEQAFLETAKKIYQNIKD  182 (218)
Q Consensus       143 ~~~~~~-------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~  182 (218)
                      ......       .+..+++.+||.+|.|++++++.|.+........
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~s  263 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS  263 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHhC
Confidence            222221       2455799999999999999999988766444333

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.32  E-value=1.6e-12  Score=99.62  Aligned_cols=110  Identities=10%  Similarity=0.050  Sum_probs=68.6

Q ss_pred             EEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHH
Q psy1169          64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEA  143 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  143 (218)
                      +.+.|++|.|.....   ......+|.+++|......+..+.+..-+-.+        +=++|+||.|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~--------aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFEL--------ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHHH--------CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhhh--------hheeeEeccccccchHHHHHHH
Confidence            566788888854332   23445699999999999887665554333222        2389999999866543332222


Q ss_pred             HHHHH----------hCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcCc
Q psy1169         144 KKFAE----------ENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGK  184 (218)
Q Consensus       144 ~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~~  184 (218)
                      ..+..          .+..+++.+||+++.|+++++++|.+........+.
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G~  263 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGE  263 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCCh
Confidence            12211          145679999999999999999999877655444443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=1.1e-10  Score=87.81  Aligned_cols=84  Identities=20%  Similarity=0.115  Sum_probs=54.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhhhh-
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERFR-   78 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-   78 (218)
                      .+||.+||.|+||||||++++..........|..+.+.....+.++..               ...+.++|+||...-. 
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            589999999999999999999977655444444444443444444322               1257899999953211 


Q ss_pred             ------hhhHhhhccCCEEEEEEECC
Q psy1169          79 ------AVTRSYYRGAAGALMVYDIT   98 (218)
Q Consensus        79 ------~~~~~~~~~~d~~i~v~d~~   98 (218)
                            ...-..++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                  12334578999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.16  E-value=3.8e-10  Score=85.52  Aligned_cols=87  Identities=21%  Similarity=0.189  Sum_probs=60.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCe---------------EEEEEEeeCcchhh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQER   76 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~   76 (218)
                      ...+||.++|.|+||||||++.+++... .....|..+.+.....+.++..               ...+.++|+||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3558999999999999999999997653 2333344444444455555432               24778999999542


Q ss_pred             -------hhhhhHhhhccCCEEEEEEECCC
Q psy1169          77 -------FRAVTRSYYRGAAGALMVYDITR   99 (218)
Q Consensus        77 -------~~~~~~~~~~~~d~~i~v~d~~~   99 (218)
                             .....-..++.+|++|+|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                   12234445789999999999865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=1.5e-09  Score=82.30  Aligned_cols=121  Identities=14%  Similarity=0.194  Sum_probs=74.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEE----------------------------------
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIE----------------------------------   58 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~----------------------------------   58 (218)
                      ...+|+|+|..++|||||+|.|++..+. ....+++..-.......                                  
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            3568999999999999999999998763 33333221111111000                                  


Q ss_pred             --------------ECC-eEEEEEEeeCcchhh-------------hhhhhHhhhccCCE-EEEEEECCChhhHHHHHHH
Q psy1169          59 --------------VHG-EKIKLQIWDTAGQER-------------FRAVTRSYYRGAAG-ALMVYDITRRSTYNHLSSW  109 (218)
Q Consensus        59 --------------~~~-~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~  109 (218)
                                    +.. ....+.|+|+||...             ...+...|+...+. +++|.++....+......+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                          000 012467999999431             23456667777775 4667777766555555555


Q ss_pred             HHHHhhhcCCCCeEEEEeeCCCCCCCcc
Q psy1169         110 LTDTKNLTNPNTVIFLIGNKMDLEGSRD  137 (218)
Q Consensus       110 ~~~~~~~~~~~~piivv~nK~Dl~~~~~  137 (218)
                      .+.+..   ...++++|+||+|.....+
T Consensus       185 ~~~~~~---~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         185 AKEVDP---QGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHHCT---TCSSEEEEEECGGGSCTTC
T ss_pred             HHHhCc---CCCceeeEEeccccccchh
Confidence            554433   3467999999999865533

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.98  E-value=2.4e-09  Score=81.37  Aligned_cols=68  Identities=12%  Similarity=0.167  Sum_probs=43.3

Q ss_pred             EEEEeeCcchhh-------------hhhhhHhhhccCCEEEEEE-ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCC
Q psy1169          65 KLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVY-DITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKM  130 (218)
Q Consensus        65 ~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (218)
                      .+.|+|+||...             ...+...|+..++.+|+++ +......-.....+.+.+..   ....+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~---~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc---CCCeEEEEEecc
Confidence            566999999432             2356777889999876554 54443333333344444432   346799999999


Q ss_pred             CCCCC
Q psy1169         131 DLEGS  135 (218)
Q Consensus       131 Dl~~~  135 (218)
                      |....
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98544

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=5.8e-10  Score=85.39  Aligned_cols=84  Identities=19%  Similarity=0.105  Sum_probs=45.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEE--E--------------------CCeEEEEEEeeCcc
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIE--V--------------------HGEKIKLQIWDTAG   73 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~i~D~~G   73 (218)
                      ++|.++|.|+||||||+|.|.+........|..+.+.......  .                    ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999987665444444333332222111  0                    11336788999999


Q ss_pred             hhhhhh----hhH---hhhccCCEEEEEEECCC
Q psy1169          74 QERFRA----VTR---SYYRGAAGALMVYDITR   99 (218)
Q Consensus        74 ~~~~~~----~~~---~~~~~~d~~i~v~d~~~   99 (218)
                      .-...+    +..   ..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            533211    122   23578999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=1.5e-06  Score=62.44  Aligned_cols=93  Identities=8%  Similarity=0.054  Sum_probs=49.6

Q ss_pred             EEEeeCcchhhhhhhhHh--------hhccCCEEEEEEECCChhhHH-HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          66 LQIWDTAGQERFRAVTRS--------YYRGAAGALMVYDITRRSTYN-HLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      ..++++.|......+...        ..-..+++|.++|+....... ....+..++....      ++++||+|+....
T Consensus        92 ~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD------~ivlNK~Dl~~~~  165 (222)
T d1nija1          92 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAGEA  165 (222)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCS------EEEEECTTTCSCT
T ss_pred             eeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCC------cccccccccccHH
Confidence            356777775433322211        122457889999998764322 2122333343322      7889999996542


Q ss_pred             cccHHHHHHHHHh--CCCcEEEeccCCCCCHHHHH
Q psy1169         137 DVRYDEAKKFAEE--NDLIFVEASAMTGENVEQAF  169 (218)
Q Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~S~~~~~~i~~~~  169 (218)
                          +..++..+.  ..+++++++ .-...++.+|
T Consensus       166 ----~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         166 ----EKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             ----HHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             ----HHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence                333444433  566777655 2234555443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=1.6e-07  Score=69.87  Aligned_cols=60  Identities=23%  Similarity=0.366  Sum_probs=36.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      ....++|+|+|.|+||||||+|+|.+....... ...+.+.....+..+.   .+.++||||..
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC---CeEEecCCCcc
Confidence            456799999999999999999999986643321 2222222222222221   36789999953

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.36  E-value=4e-06  Score=57.66  Aligned_cols=22  Identities=45%  Similarity=0.783  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +||+|+|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999975

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=2.5e-06  Score=60.95  Aligned_cols=84  Identities=18%  Similarity=0.204  Sum_probs=58.9

Q ss_pred             hhccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHH--hCCCcEEEeccC
Q psy1169          84 YYRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAE--ENDLIFVEASAM  160 (218)
Q Consensus        84 ~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~S~~  160 (218)
                      ...+.|.+++|+++.++ -+...+..|+-....   .+++.+||+||+||.+....  +....+..  ....+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEEeccc
Confidence            34678999999998875 445666666654443   57899999999999654322  22333333  244678999999


Q ss_pred             CCCCHHHHHHHH
Q psy1169         161 TGENVEQAFLET  172 (218)
Q Consensus       161 ~~~~i~~~~~~i  172 (218)
                      ++.+++++...+
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999877554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=3.3e-07  Score=65.66  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      ..+++|++|||||||+|+|....
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchh
Confidence            46899999999999999997643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.15  E-value=1.9e-07  Score=67.11  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ..+++|++|||||||+|+|+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4679999999999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=5e-06  Score=61.62  Aligned_cols=91  Identities=11%  Similarity=0.089  Sum_probs=64.2

Q ss_pred             hHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHHHHhCCCcEEEeccC
Q psy1169          81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKFAEENDLIFVEASAM  160 (218)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~  160 (218)
                      ....++.+|++|+|+|+.++.+...  ..+..+.    .+.|.++|+||+|+.....  .+...++....+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeecc
Confidence            4557899999999999999866432  1122222    2679999999999964421  233334445567788999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q psy1169         161 TGENVEQAFLETAKKIYQN  179 (218)
Q Consensus       161 ~~~~i~~~~~~i~~~~~~~  179 (218)
                      ++.+..++...+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhh
Confidence            9999988888777766554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=3.3e-06  Score=59.84  Aligned_cols=90  Identities=14%  Similarity=0.147  Sum_probs=51.8

Q ss_pred             EEEEEeeCcchhhhhh-----h--hHhhhc-----cCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCC
Q psy1169          64 IKLQIWDTAGQERFRA-----V--TRSYYR-----GAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKM  130 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~-----~--~~~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (218)
                      +.+.|+||+|......     +  .....+     ..+-.++|+|+... +....+..++..+.       +--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG-------LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSC-------CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccC-------CceEEEeec
Confidence            4678999999432211     1  111222     24577899998775 33444444443331       235789999


Q ss_pred             CCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHH
Q psy1169         131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVE  166 (218)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~  166 (218)
                      |....    .-.+...+...++|+..++  .|.+++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            96432    2345556677888977777  344443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.87  E-value=5e-06  Score=58.83  Aligned_cols=85  Identities=18%  Similarity=0.095  Sum_probs=49.1

Q ss_pred             EEEEEeeCcchhhhhh----hhHhh--hccCCEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCc
Q psy1169          64 IKLQIWDTAGQERFRA----VTRSY--YRGAAGALMVYDITRRS-TYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSR  136 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  136 (218)
                      ..+.|+||+|....+.    ....+  ....+-+++|.|..... ....+..+.+.+.       +--+++||.|.... 
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~~~~I~TKlDe~~~-  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------VTGLVLTKLDGDAR-  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC-------CCEEEEECGGGCSS-
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC-------CCeeEEeecCcccc-
Confidence            4678999999432211    11111  23567889999987753 3333333333221       12478999996322 


Q ss_pred             cccHHHHHHHHHhCCCcEEEecc
Q psy1169         137 DVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                         .-.+..++...++|+..++.
T Consensus       165 ---~G~~l~~~~~~~~Pi~~i~~  184 (207)
T d1ls1a2         165 ---GGAALSARHVTGKPIYFAGV  184 (207)
T ss_dssp             ---CHHHHHHHHHHCCCEEEEC-
T ss_pred             ---chHHHHHHHHHCCCEEEEeC
Confidence               24556667778888776654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.85  E-value=4.6e-06  Score=59.76  Aligned_cols=83  Identities=13%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             hccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCccccHHHHHHH---HHhCCCcEEEeccC
Q psy1169          85 YRGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEGSRDVRYDEAKKF---AEENDLIFVEASAM  160 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~S~~  160 (218)
                      ..++|.+++|+++.++ -++..+..++-....   .+++.+||+||+||.++.+.. +....+   ....+++++.+|+.
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~-~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTE-DTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHH-HHHHHHHHHHHHHTCCEEECCHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHH-HHHHHHHHHHhhccccceeeecC
Confidence            4688999999999775 456666666544433   578999999999997654321 222222   33458899999999


Q ss_pred             CCCCHHHHHHH
Q psy1169         161 TGENVEQAFLE  171 (218)
Q Consensus       161 ~~~~i~~~~~~  171 (218)
                      ++.|++++...
T Consensus        84 ~~~gl~~L~~~   94 (231)
T d1t9ha2          84 DQDSLADIIPH   94 (231)
T ss_dssp             HHTTCTTTGGG
T ss_pred             ChhHHHHHHHh
Confidence            99998876643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.79  E-value=1.8e-05  Score=55.98  Aligned_cols=91  Identities=19%  Similarity=0.220  Sum_probs=52.9

Q ss_pred             EEEEEeeCcchhhhh------hhhHhhh--ccCCEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q psy1169          64 IKLQIWDTAGQERFR------AVTRSYY--RGAAGALMVYDITRRST-YNHLSSWLTDTKNLTNPNTVIFLIGNKMDLEG  134 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  134 (218)
                      ..+.++||+|...+.      .....+.  -..+-+++|+++..... .+.+..++..+      +. --+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~------~~-~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS------KI-GTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC------TT-EEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc------Cc-ceEEEecccCCC
Confidence            467899999953221      1111111  23567788999877543 33333333221      11 246799999632


Q ss_pred             CccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169         135 SRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      .    .-.+..++...++|+..++.  |.++++
T Consensus       168 ~----~G~~l~~~~~~~lPi~~it~--Gq~v~D  194 (211)
T d1j8yf2         168 K----GGGALSAVAATGATIKFIGT--GEKIDE  194 (211)
T ss_dssp             C----HHHHHHHHHTTTCCEEEEEC--SSSTTC
T ss_pred             c----ccHHHHHHHHHCcCEEEEeC--CCCccc
Confidence            2    35666777889999877774  444443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.73  E-value=8.3e-06  Score=55.73  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=22.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+..++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            35678999999999999999998854

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=8e-06  Score=56.31  Aligned_cols=42  Identities=10%  Similarity=0.215  Sum_probs=28.8

Q ss_pred             HHHHHHHhCCCcEEEeccCCCCCHHHHHHHHHHHHHHhhhcCccc
Q psy1169         142 EAKKFAEENDLIFVEASAMTGENVEQAFLETAKKIYQNIKDGKLN  186 (218)
Q Consensus       142 ~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~i~~~~~~~~~~~~~~  186 (218)
                      ...++.+.++.+++.+..   .++++.++.+++.+.+.+.+....
T Consensus       147 ~~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~~~  188 (192)
T d1lw7a2         147 LLKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEEIS  188 (192)
T ss_dssp             HHHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCcHh
Confidence            355556667778777764   468888888888887666555443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.67  E-value=8.9e-06  Score=55.41  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..+|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999853

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.4e-05  Score=54.20  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      =++|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.62  E-value=1.6e-05  Score=55.29  Aligned_cols=25  Identities=16%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +..+||+++|+|||||||+...|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998854

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.58  E-value=1.9e-05  Score=54.38  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.57  E-value=2.2e-05  Score=54.67  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +.+.++|+|+|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.7e-05  Score=53.71  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999854

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.51  E-value=2.8e-05  Score=53.69  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.50  E-value=2.8e-05  Score=51.83  Aligned_cols=20  Identities=35%  Similarity=0.507  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|.|++||||||+++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999865

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.48  E-value=2.3e-05  Score=54.51  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+++|+|+|++||||||+++.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998853

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=3.1e-05  Score=53.29  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +||+|+|++||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988853

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.46  E-value=4.5e-05  Score=53.10  Aligned_cols=24  Identities=17%  Similarity=0.198  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+.-|+|+|++||||||+.++|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=3.8e-05  Score=52.92  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+||+|+|++||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.40  E-value=4.3e-05  Score=51.77  Aligned_cols=20  Identities=45%  Similarity=0.730  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|.|++||||||+++.|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999964

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=0.00033  Score=46.82  Aligned_cols=76  Identities=16%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCceeeeEEEEEEEECC-eEEEEEEeeCcchhhhhhh-hHhhhccCCE
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAV-TRSYYRGAAG   90 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~   90 (218)
                      ..-|++-|+-|||||||++.++..--.  ....||...   ...+...+ .-+.+.+|-....+++..+ ...++ ..++
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l---~~~Y~~~~~~i~H~DlYRl~~~~El~~lg~~e~~-~~~~  108 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL---VEEYNIAGKMIYHFDLYRLADPEELEFMGIRDYF-NTDS  108 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC---EEEEEETTEEEEEEECTTCSCTTHHHHSTHHHHH-SSSC
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE---EEeeccCCceEEEEEEeccCChhhhhhCCchhHh-ccCC
Confidence            445888999999999999999753211  122333222   22333333 2346667766665544432 22333 3355


Q ss_pred             EEEE
Q psy1169          91 ALMV   94 (218)
Q Consensus        91 ~i~v   94 (218)
                      ++++
T Consensus       109 i~~I  112 (158)
T d1htwa_         109 ICLI  112 (158)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5555

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=5.6e-05  Score=51.25  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=18.3

Q ss_pred             EE-EEEcCCCCCHHHHHHHHHh
Q psy1169          17 KY-IIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki-~v~G~~g~GKStli~~l~~   37 (218)
                      || .|+|.+|||||||+++|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 5999999999999999964

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=5.7e-05  Score=50.63  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=2.6e-05  Score=53.78  Aligned_cols=21  Identities=19%  Similarity=0.575  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |+|+||+|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999853

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=8.9e-05  Score=51.52  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++.|+|+|++||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998854

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.27  E-value=5.3e-05  Score=51.38  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~   36 (218)
                      .+|+++|++||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            469999999999999988884

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00013  Score=49.92  Aligned_cols=26  Identities=19%  Similarity=0.200  Sum_probs=21.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+...=|+++|.+||||||+++++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34556799999999999999999854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=8.1e-05  Score=51.54  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00017  Score=53.08  Aligned_cols=62  Identities=23%  Similarity=0.161  Sum_probs=39.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhCCCCC--C---CCCceeeeEEEEEEEECCeEEEEEEeeCcchh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--D---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE   75 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (218)
                      .+..=|.|+|+.++|||+|+|.|.+....-  .   ...|.++-.....+ ..+....+.++||.|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            356788999999999999999998755321  1   11233332221111 13445577899999954

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=9.5e-05  Score=50.92  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.17  E-value=9.1e-05  Score=50.01  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998843

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.15  E-value=0.00011  Score=51.53  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++++|+.|+|||||++.+.+.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            3689999999999999999663

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00012  Score=52.86  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      +++|+|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999988663

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00012  Score=49.95  Aligned_cols=21  Identities=38%  Similarity=0.700  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999863

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00012  Score=50.77  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.00012  Score=51.31  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .=|+++|.||+||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.12  E-value=0.00013  Score=49.95  Aligned_cols=20  Identities=20%  Similarity=0.313  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68889999999999998853

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00014  Score=49.12  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      ++|+|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00015  Score=51.90  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            37899999999999999887643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00015  Score=51.01  Aligned_cols=21  Identities=33%  Similarity=0.635  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |+|+||+|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.08  E-value=0.00016  Score=49.71  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=17.9

Q ss_pred             eEEE-EEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYI-IIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~-v~G~~g~GKStli~~l~~   37 (218)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3665 569999999999998853

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.07  E-value=0.00016  Score=51.96  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999997744

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.06  E-value=0.00016  Score=52.21  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999988654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.05  E-value=0.00022  Score=48.36  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHH
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      ..+-|.++|.+||||||+.+.|.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34678899999999999998875

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.04  E-value=0.00018  Score=48.78  Aligned_cols=20  Identities=25%  Similarity=0.514  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |++.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999988854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.04  E-value=0.00016  Score=52.47  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999988653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00026  Score=49.16  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..--|+|+|++||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.02  E-value=0.00018  Score=51.58  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37899999999999999987654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00018  Score=52.18  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999988653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.00  E-value=0.00017  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            3789999999999999987553

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.0002  Score=52.87  Aligned_cols=22  Identities=32%  Similarity=0.461  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .++|+|++|+|||||++.+.+.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4899999999999999999764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.99  E-value=0.00019  Score=48.71  Aligned_cols=19  Identities=16%  Similarity=0.450  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      |+++|++||||||+.+.|.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999884

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.97  E-value=0.00022  Score=48.26  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45569999999999999865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.95  E-value=0.00022  Score=49.50  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|+|+|||||||+..+|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999964

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.91  E-value=0.00023  Score=51.25  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++++|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999997643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.91  E-value=0.00015  Score=51.66  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      ++++|++|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7899999999999999997754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.91  E-value=0.00026  Score=50.84  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -+.++|++|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999887644

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00019  Score=51.49  Aligned_cols=21  Identities=33%  Similarity=0.552  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      +.++|+.|+|||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            789999999999999999873

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.88  E-value=0.00037  Score=50.71  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .--|++.|+||+|||||++.+...
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            334999999999999999998653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.0046  Score=44.16  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00025  Score=50.88  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            3689999999999999998664

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.0004  Score=49.90  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~~   39 (218)
                      +.++|+.|+|||||++.+.+..
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999997654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.80  E-value=0.00035  Score=48.18  Aligned_cols=24  Identities=25%  Similarity=0.162  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..+=|.|.|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345589999999999999999863

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00039  Score=48.18  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -+++++|++|+|||++++.|..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            3689999999999999988854

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00037  Score=49.94  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.+++.||||+||||+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999998865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.77  E-value=0.0002  Score=52.02  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      +++|+|++|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999997755

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00016  Score=49.94  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..-|.++|++||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999998853

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.00041  Score=49.60  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..+++.||||+||||+++.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3589999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.72  E-value=0.00039  Score=50.46  Aligned_cols=21  Identities=43%  Similarity=0.577  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      +.++|+.|+|||||++.+.+.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999999764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.00088  Score=47.12  Aligned_cols=91  Identities=21%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             EEEEEeeCcchhhhhh----hhHhh---hc-----cCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCC
Q psy1169          64 IKLQIWDTAGQERFRA----VTRSY---YR-----GAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKM  130 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~---~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (218)
                      +.+.|+||+|....+.    ....+   ..     ..+-.++|+|+... +....+..++..+       -+--+++||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-------CCceEEEecc
Confidence            4678999999432111    11111   11     14668899998765 3344444433322       1235789999


Q ss_pred             CCCCCccccHHHHHHHHHhCCCcEEEeccCCCCCHHH
Q psy1169         131 DLEGSRDVRYDEAKKFAEENDLIFVEASAMTGENVEQ  167 (218)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~  167 (218)
                      |....    .-.+...+...++|+..++.  |.++++
T Consensus       167 De~~~----~G~~l~~~~~~~~Pi~~i~~--Gq~v~D  197 (213)
T d1vmaa2         167 DGTAK----GGITLAIARELGIPIKFIGV--GEKAED  197 (213)
T ss_dssp             GGCSC----TTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred             cCCCc----ccHHHHHHHHHCCCEEEEeC--CCCccc
Confidence            96322    23455666777889777763  444443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.69  E-value=0.00044  Score=50.28  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      -+.|+|++|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999664

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.69  E-value=0.00042  Score=52.11  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -+|+|.|+.|+|||||++.|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            359999999999999999998643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00055  Score=49.96  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      =+++++|++|+|||++++.|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3789999999999999988854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.63  E-value=0.00024  Score=51.01  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      -++++|++|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999997743

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.61  E-value=0.00062  Score=48.03  Aligned_cols=22  Identities=23%  Similarity=0.296  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +.|+|-||+||||||....|..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6788889999999999998853

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.0011  Score=47.65  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ...-.+++.||+|+||||+++.+...
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34456899999999999999999753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00084  Score=47.09  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46689999999999999998854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.45  E-value=0.00086  Score=47.65  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+++.|++|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.43  E-value=0.00086  Score=48.83  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      +++.|++|+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            45569999999999999864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00094  Score=46.92  Aligned_cols=21  Identities=33%  Similarity=0.427  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      =|+|.||+||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356779999999999998853

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.0015  Score=44.89  Aligned_cols=25  Identities=24%  Similarity=0.244  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      +++=|+|.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4577899999999999999988543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.38  E-value=0.0014  Score=47.13  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .-.|++.||+|+|||++++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45699999999999999999964

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.37  E-value=0.00093  Score=48.41  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477899999999999999864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.001  Score=49.68  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.++++||+|+|||.|.+.+..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4588999999999999999865

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.33  E-value=0.0012  Score=47.72  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0019  Score=48.00  Aligned_cols=29  Identities=24%  Similarity=0.310  Sum_probs=23.7

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      ++......+=|.|.|++|||||||.+.|.
T Consensus        73 ~~~~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          73 GTNGQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             TCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34555677899999999999999988874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0015  Score=46.30  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+++.||+|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            389999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.0016  Score=46.92  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|++.|++|+|||++++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            589999999999999999975

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.13  E-value=0.0015  Score=45.07  Aligned_cols=25  Identities=32%  Similarity=0.660  Sum_probs=21.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...+=|+|-|..||||||+++.|..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999998854

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0017  Score=45.91  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+++.||+|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999988753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0021  Score=44.69  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.00  E-value=0.0019  Score=45.27  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...=|.+.|.+|+|||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345589999999999999998853

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.95  E-value=0.0025  Score=44.54  Aligned_cols=85  Identities=12%  Similarity=0.042  Sum_probs=49.1

Q ss_pred             EEEEEeeCcchhhhhh----hhHhh---h-----ccCCEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCC
Q psy1169          64 IKLQIWDTAGQERFRA----VTRSY---Y-----RGAAGALMVYDITRR-STYNHLSSWLTDTKNLTNPNTVIFLIGNKM  130 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~  130 (218)
                      ..+.|+||+|......    ....+   .     ...+-.++|+|+... +....+..++..+..       --+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~-------~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGL-------TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCC-------SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCC-------ceEEEecc
Confidence            4678999999432211    11111   1     134667899998775 444555554443321       25689999


Q ss_pred             CCCCCccccHHHHHHHHHhCCCcEEEecc
Q psy1169         131 DLEGSRDVRYDEAKKFAEENDLIFVEASA  159 (218)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~S~  159 (218)
                      |....-    -.+..++...++|+..++.
T Consensus       162 Det~~~----G~~l~~~~~~~~Pi~~i~~  186 (207)
T d1okkd2         162 DGTAKG----GVLIPIVRTLKVPIKFVGV  186 (207)
T ss_dssp             TSSCCC----TTHHHHHHHHCCCEEEEEC
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEeC
Confidence            964332    2344556667888766664

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.0021  Score=45.33  Aligned_cols=21  Identities=19%  Similarity=0.437  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+++.|++|+||||+++.+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            489999999999999999875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0023  Score=46.28  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -.+++.||+|+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4589999999999999999964

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.0024  Score=46.28  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|++.||+|+|||++++.+..
T Consensus        40 giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHH
Confidence            589999999999999999965

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.0017  Score=49.86  Aligned_cols=20  Identities=30%  Similarity=0.715  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy1169          17 KYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~   36 (218)
                      ++++||++|||||++++.|.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            46999999999999986554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.72  E-value=0.0023  Score=50.06  Aligned_cols=21  Identities=29%  Similarity=0.643  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      +|+++||+|+|||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999854

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.0032  Score=45.75  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        15 ~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .--|++.|++|+|||+|++.+...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            345999999999999999999653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.46  E-value=0.0057  Score=41.40  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKF   40 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~   40 (218)
                      .-|++.|++|+||||+.-.|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3489999999999999999887554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0043  Score=43.19  Aligned_cols=20  Identities=30%  Similarity=0.365  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0056  Score=42.63  Aligned_cols=24  Identities=25%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      +=|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            347899999999999999885443

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0046  Score=42.81  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      =+.|.|++|+|||+|+..|....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.38  E-value=0.0074  Score=41.88  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +=|.|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999997753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.0075  Score=44.17  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=20.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169          12 YSYIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        12 ~~~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      ....+=|.|.|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456888999999999999987763

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.00079  Score=46.44  Aligned_cols=18  Identities=33%  Similarity=0.567  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q psy1169          19 IIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        19 ~v~G~~g~GKStli~~l~   36 (218)
                      +|+|+.|+|||||+..|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999984

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.29  E-value=0.0065  Score=41.15  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKF   40 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~   40 (218)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3479999999999999999976543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.24  E-value=0.0055  Score=44.75  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .-|.|.|+.|+|||||+..+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35789999999999999998653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.17  E-value=0.0058  Score=46.46  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -+++.||||+|||+|...+..
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.16  E-value=0.0066  Score=45.39  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHH
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      +..++|+|=|+-|+||||+++.|.
T Consensus         2 p~~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           2 PTLLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHT
T ss_pred             CCceEEEEECCcCCCHHHHHHHHH
Confidence            467899999999999999999884

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.14  E-value=0.0035  Score=46.27  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      -+++|+.|+||||+++++.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            3789999999999999883

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0054  Score=43.35  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      =+.|.|++|+|||+|+..+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999986543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.10  E-value=0.0061  Score=43.39  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      =++|.|++|+|||+|.-.++...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999887544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0066  Score=42.37  Aligned_cols=19  Identities=21%  Similarity=0.251  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      |+|-|..||||||+++.|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7777999999999888774

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.01  E-value=0.0031  Score=47.32  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .++++|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999853

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.98  E-value=0.0031  Score=46.29  Aligned_cols=19  Identities=32%  Similarity=0.588  Sum_probs=14.7

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      |.|.|.+||||||+.+.|.
T Consensus         7 IgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEESCC---CCTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            8999999999999999874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.97  E-value=0.0095  Score=40.02  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQKF   40 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~~   40 (218)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999988877654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.94  E-value=0.0094  Score=44.67  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ...++|+|=|.-|+||||+++.|..
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CceEEEEEECCccCCHHHHHHHHHH
Confidence            4679999999999999999998865

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0045  Score=43.83  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998754

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.82  E-value=0.0083  Score=42.47  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      +..--++|.|++|+|||+|+..+...
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            33445789999999999999998754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0092  Score=44.42  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..-.++++||+|+|||.|.+.|..
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHh
Confidence            344689999999999999999854

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.75  E-value=0.0086  Score=44.84  Aligned_cols=25  Identities=20%  Similarity=0.468  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~~   38 (218)
                      ..++|+|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999998653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.51  E-value=0.0097  Score=45.20  Aligned_cols=24  Identities=21%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..-.++++||+|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            345699999999999999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.009  Score=45.86  Aligned_cols=19  Identities=37%  Similarity=0.564  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      -+|+|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999984

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.44  E-value=0.011  Score=45.50  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      |+|.|+.|+||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.012  Score=41.59  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|=|.-||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578899999999999999864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.013  Score=41.62  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~~~   39 (218)
                      ==++|.|++|+|||+|...++...
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999997543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.36  E-value=0.012  Score=41.49  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      =++|.|++|+|||+|+..+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999999743

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.014  Score=40.49  Aligned_cols=20  Identities=20%  Similarity=0.394  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.015  Score=41.26  Aligned_cols=19  Identities=32%  Similarity=0.690  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      +++.|++|+||||+++.+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            6889999999999998875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.10  E-value=0.014  Score=43.43  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      +++.|+||+|||.|.+.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            34579999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.07  E-value=0.016  Score=40.42  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q psy1169          18 YIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~~   38 (218)
                      +.+.|++|+|||-|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.87  E-value=0.017  Score=40.31  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHH
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~   36 (218)
                      ..--++|.|++|+|||+|+..++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            33457899999999999987764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.86  E-value=0.014  Score=40.24  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      =-+++.||+++|||.|+..|++
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            4588999999999999998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.02  Score=39.87  Aligned_cols=20  Identities=20%  Similarity=0.174  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|-|.-||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999998854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.52  E-value=0.022  Score=41.11  Aligned_cols=20  Identities=25%  Similarity=0.425  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999888753

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.29  E-value=0.016  Score=42.31  Aligned_cols=17  Identities=18%  Similarity=0.591  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCHHHHH-HH
Q psy1169          18 YIIIGDMGVGKSCLL-HQ   34 (218)
Q Consensus        18 i~v~G~~g~GKStli-~~   34 (218)
                      ++|+|.+|+||||.+ ++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            689999999999754 44

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.24  E-value=0.026  Score=39.86  Aligned_cols=21  Identities=14%  Similarity=0.085  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999998854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.021  Score=44.02  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      -+++|+|.+|+|||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4599999999999999887753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.17  E-value=0.02  Score=42.20  Aligned_cols=15  Identities=33%  Similarity=0.660  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q psy1169          18 YIIIGDMGVGKSCLL   32 (218)
Q Consensus        18 i~v~G~~g~GKStli   32 (218)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.036  Score=40.38  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      |++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            899999999999999988864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.036  Score=39.83  Aligned_cols=19  Identities=32%  Similarity=0.375  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      .+|+|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6699999999999997774

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.57  E-value=0.026  Score=41.88  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      --++++|++|+|||.+.+.|..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHH
Confidence            3578889999999999988754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.85  E-value=0.053  Score=39.09  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..--+++.|+++.|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            344678899999999999999865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.76  E-value=0.052  Score=40.95  Aligned_cols=19  Identities=26%  Similarity=0.461  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q psy1169          17 KYIIIGDMGVGKSCLLHQF   35 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l   35 (218)
                      -.+|.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3788999999999988554

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.34  E-value=0.061  Score=34.67  Aligned_cols=18  Identities=33%  Similarity=0.591  Sum_probs=14.3

Q ss_pred             EEEcCCCCCHHH-HHHHHH
Q psy1169          19 IIIGDMGVGKSC-LLHQFT   36 (218)
Q Consensus        19 ~v~G~~g~GKSt-li~~l~   36 (218)
                      +++||..||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            568999999999 666653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=91.01  E-value=0.25  Score=33.96  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q psy1169          16 FKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        16 ~ki~v~G~~g~GKStli~~l~~   37 (218)
                      --|+++|++||||||.+-+|..
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999888753

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.03  Score=41.13  Aligned_cols=29  Identities=24%  Similarity=0.270  Sum_probs=19.6

Q ss_pred             cccCCCCCCcceeeEEEEEcCCCCCHHHHH
Q psy1169           3 TMSSSGQYSYSYIFKYIIIGDMGVGKSCLL   32 (218)
Q Consensus         3 ~~~~~~~~~~~~~~ki~v~G~~g~GKStli   32 (218)
                      +|++..+......+- +++|.+|+|||||-
T Consensus         3 ~mhcsan~~~~~~~a-lfFGLSGTGKTTLs   31 (313)
T d2olra1           3 SMHCSANVGEKGDVA-VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EECEEEEECTTSCEE-EEECSTTSSHHHHH
T ss_pred             ceecccccCCCCCEE-EEEccCCCCcccce
Confidence            455555444333333 79999999999965

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.26  Score=31.21  Aligned_cols=41  Identities=10%  Similarity=0.128  Sum_probs=25.1

Q ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q psy1169          85 YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIFLIGNKMDL  132 (218)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  132 (218)
                      +..+|+  +.  ++..+-|.++..+...+..   .+.++++.+-..|-
T Consensus        71 ~~~~d~--I~--IDEaQFf~dl~~~~~~~~~---~~~~Viv~GLd~Df  111 (133)
T d1xbta1          71 ALGVAV--IG--IDEGQFFPDIVEFCEAMAN---AGKTVIVAALDGTF  111 (133)
T ss_dssp             HHTCSE--EE--ESSGGGCTTHHHHHHHHHH---TTCEEEEECCSBCT
T ss_pred             hcccce--EE--eehhHHHHHHHHHHHHHHh---cCCcEEEEEecccc
Confidence            445664  22  2444445566666655554   47889988887775

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.23  E-value=0.78  Score=30.40  Aligned_cols=102  Identities=11%  Similarity=0.156  Sum_probs=57.0

Q ss_pred             cceeeEEEEEcC-CCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCeEEEEEEeeCcchhhhh------------
Q psy1169          12 YSYIFKYIIIGD-MGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------------   78 (218)
Q Consensus        12 ~~~~~ki~v~G~-~g~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------   78 (218)
                      ....+||+|+|. .++|=+ |+-+|..+......                 ..+.+.++|.+......            
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~   82 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNH-LLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLY   82 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHH-HHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTC
T ss_pred             cCCCcEEEEECCCcHHHHH-HHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhccccc
Confidence            356799999997 566654 55566655433221                 22456677776632210            


Q ss_pred             ---------hhhHhhhccCCEEEEEEECCCh--hhHHH--------HHHHHHHHhhhcCCCCeEEEEeeCCC
Q psy1169          79 ---------AVTRSYYRGAAGALMVYDITRR--STYNH--------LSSWLTDTKNLTNPNTVIFLIGNKMD  131 (218)
Q Consensus        79 ---------~~~~~~~~~~d~~i~v~d~~~~--~s~~~--------~~~~~~~~~~~~~~~~piivv~nK~D  131 (218)
                               ......+.++|++|++-.....  ++-.+        ++.+.+.+..+..++..+++++|-.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          83 PLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                     0123346788888888665442  12111        23344455555544666777777666

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.01  E-value=0.1  Score=37.33  Aligned_cols=87  Identities=11%  Similarity=0.059  Sum_probs=47.2

Q ss_pred             EEEEEeeCcchhhhhh-hhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCe-EEEEeeCCCCCCCccccH
Q psy1169          64 IKLQIWDTAGQERFRA-VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTN-PNTV-IFLIGNKMDLEGSRDVRY  140 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-iivv~nK~Dl~~~~~~~~  140 (218)
                      +.+.++|+++...... ........+|.++++.+. +..++..+......+..... .+.+ ..++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            5677889987442222 222233457877776655 45555555555444444332 2333 3477898876443    2


Q ss_pred             HHHHHHHHhCCCcEE
Q psy1169         141 DEAKKFAEENDLIFV  155 (218)
Q Consensus       141 ~~~~~~~~~~~~~~~  155 (218)
                      +..+++....+.+++
T Consensus       191 ~~~~~~~~~~~~~~~  205 (269)
T d1cp2a_         191 ELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             chhhhhHhhcCCeEE
Confidence            445555555555543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.01  E-value=0.11  Score=37.51  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998888654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.74  E-value=0.14  Score=31.89  Aligned_cols=25  Identities=12%  Similarity=0.122  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        13 ~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      +.-+-|.+-|.+|+||+|+.+.|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4568899999999999999999854

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.71  E-value=0.11  Score=37.31  Aligned_cols=21  Identities=29%  Similarity=0.232  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      =+.|.|++|+|||+|+-.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            367899999999999987754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.52  E-value=0.12  Score=36.72  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      .|+|.|++|+||+.+.+.+...
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHHh
Confidence            4899999999999999988653

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.47  E-value=1.1  Score=30.59  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=47.3

Q ss_pred             EEEEEEeeCcchhhhhhhhHhhhccCCEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCCCCCccccHH
Q psy1169          63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTKNLTNPNTVIF-LIGNKMDLEGSRDVRYD  141 (218)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~  141 (218)
                      .+.+.++|+++....  .....+..+|.++++...+ ..+...+...+..+..   .+.|++ +|.|+.+... ......
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~-~~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD-RDIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT-TCCCHH
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc-chhhhH
Confidence            357789999886433  3344567799999988765 4455555555544443   456654 7899998643 333333


Q ss_pred             HHHHH
Q psy1169         142 EAKKF  146 (218)
Q Consensus       142 ~~~~~  146 (218)
                      ..+.+
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44433

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.21  E-value=0.054  Score=39.94  Aligned_cols=28  Identities=25%  Similarity=0.264  Sum_probs=18.6

Q ss_pred             ccCCCCCCcceeeEEEEEcCCCCCHHHHH
Q psy1169           4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLL   32 (218)
Q Consensus         4 ~~~~~~~~~~~~~ki~v~G~~g~GKStli   32 (218)
                      |++..+...+.-. -+++|.+|+|||||-
T Consensus         4 mH~san~~~~gd~-alfFGLSGTGKTTLs   31 (323)
T d1ii2a1           4 MHASANVGKQGDV-TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             ESEEEEECTTCCE-EEEECCTTSSHHHHH
T ss_pred             cccccccCCCCCE-EEEEccCCCCcccce
Confidence            4444433333333 369999999999987

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.84  E-value=0.13  Score=36.09  Aligned_cols=19  Identities=37%  Similarity=0.357  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5899999999999999874

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.62  E-value=0.064  Score=39.49  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=18.8

Q ss_pred             ccCCCCCCcceeeEEEEEcCCCCCHHHHH
Q psy1169           4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLL   32 (218)
Q Consensus         4 ~~~~~~~~~~~~~ki~v~G~~g~GKStli   32 (218)
                      |+++.+...+..+ -+++|.+|+|||||-
T Consensus         4 mh~san~~~~~~v-alffGLSGTGKTTLs   31 (318)
T d1j3ba1           4 MHASANVGKEGDV-AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EECEEEECTTCCE-EEEEECTTSCHHHHT
T ss_pred             cccccccCCCCCE-EEEEccCCCCccccc
Confidence            5555444433222 489999999999965

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.47  E-value=0.15  Score=35.66  Aligned_cols=19  Identities=37%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~   36 (218)
                      ++|.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999999874

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.39  E-value=0.19  Score=34.26  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=16.7

Q ss_pred             EEEEEcCC-CCCHHHHHHHHH
Q psy1169          17 KYIIIGDM-GVGKSCLLHQFT   36 (218)
Q Consensus        17 ki~v~G~~-g~GKStli~~l~   36 (218)
                      |+.|.|.. ||||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            78999995 999999886663

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.13  E-value=0.2  Score=36.11  Aligned_cols=87  Identities=9%  Similarity=0.031  Sum_probs=42.1

Q ss_pred             EEEEEeeCcchhhhhhhhHhh-hccCCEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeE-EEEeeCCCCCCCccccH
Q psy1169          64 IKLQIWDTAGQERFRAVTRSY-YRGAAGALMVYDITRRSTYNHLSSWLTDTKNLT-NPNTVI-FLIGNKMDLEGSRDVRY  140 (218)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi-ivv~nK~Dl~~~~~~~~  140 (218)
                      +.+.++|+++........... ...++.++++ -..+..+...+...++.+.... ..+.++ .++.|+.+....    .
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~-~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIV-CSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE----D  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEE-ECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH----H
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecc-cchhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhh----H
Confidence            566788887754222211111 2345555544 3444445555545444443322 234443 477888764222    2


Q ss_pred             HHHHHHHHhCCCcEE
Q psy1169         141 DEAKKFAEENDLIFV  155 (218)
Q Consensus       141 ~~~~~~~~~~~~~~~  155 (218)
                      +....+....+.+++
T Consensus       194 ~~~~~~~~~~g~~vl  208 (289)
T d2afhe1         194 ELIIALANKLGTQMI  208 (289)
T ss_dssp             HHHHHHHHHHTSCEE
T ss_pred             HHHHHHHHHcCCeEE
Confidence            334455555555544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.78  E-value=0.51  Score=32.47  Aligned_cols=30  Identities=17%  Similarity=0.218  Sum_probs=23.1

Q ss_pred             CCCCcceeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169           8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus         8 ~~~~~~~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      .+-++....-|+++|++|+||||.+-.|..
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            334445666889999999999999877753

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.42  E-value=0.21  Score=35.85  Aligned_cols=18  Identities=28%  Similarity=0.434  Sum_probs=14.7

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q psy1169          18 YIIIGDMGVGKSCLLHQF   35 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l   35 (218)
                      |++.|..|+||||+.-.+
T Consensus        11 i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          11 LFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHH
Confidence            467999999999976554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.00  E-value=1.1  Score=28.92  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=18.9

Q ss_pred             eeeEEEEEcC-CCCCHHHHHHHHHhCCCC
Q psy1169          14 YIFKYIIIGD-MGVGKSCLLHQFTEQKFM   41 (218)
Q Consensus        14 ~~~ki~v~G~-~g~GKStli~~l~~~~~~   41 (218)
                      ..+||.|+|. .++|-+ +...|..+...
T Consensus         3 ~p~KV~IiGA~G~VG~~-~a~~l~~~~l~   30 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYS-LLFRIAAGEML   30 (154)
T ss_dssp             CCEEEEESSTTSHHHHH-HHHHHHTTTTT
T ss_pred             CCCEEEEECCCCHHHHH-HHHHHHhcccc
Confidence            5689999996 778855 56666555543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.80  E-value=0.24  Score=35.32  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=14.5

Q ss_pred             eEE-EEEcCCCCCHHHHHHHH
Q psy1169          16 FKY-IIIGDMGVGKSCLLHQF   35 (218)
Q Consensus        16 ~ki-~v~G~~g~GKStli~~l   35 (218)
                      -+| ++.|..|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            344 45599999999976544

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.56  E-value=0.19  Score=36.46  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      |+.++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            789999999999999877754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=85.17  E-value=0.2  Score=31.56  Aligned_cols=21  Identities=19%  Similarity=0.082  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      ..+|.++.|+|||.++-.++.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            357799999999998866543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.06  E-value=0.29  Score=35.10  Aligned_cols=21  Identities=24%  Similarity=0.162  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      =+.|.|++++|||+|+..+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            357899999999999988764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.21  E-value=0.85  Score=29.42  Aligned_cols=25  Identities=12%  Similarity=0.145  Sum_probs=17.7

Q ss_pred             eeeEEEEEcC-CCCCHHHHHHHHHhCC
Q psy1169          14 YIFKYIIIGD-MGVGKSCLLHQFTEQK   39 (218)
Q Consensus        14 ~~~ki~v~G~-~g~GKStli~~l~~~~   39 (218)
                      ..+||.|+|. .++|.+... .|..+.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHH
Confidence            4679999995 788887644 455443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.13  E-value=0.34  Score=34.71  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~   37 (218)
                      =+.|.|++++|||+|+-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            467899999999999877753

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.00  E-value=0.38  Score=32.18  Aligned_cols=20  Identities=20%  Similarity=0.270  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy1169          18 YIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        18 i~v~G~~g~GKStli~~l~~   37 (218)
                      |+|+|...+|||.+...+..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            68999999999999999864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.83  E-value=0.41  Score=32.50  Aligned_cols=24  Identities=13%  Similarity=-0.060  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q psy1169          14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (218)
Q Consensus        14 ~~~ki~v~G~~g~GKStli~~l~~   37 (218)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.64  E-value=4.1  Score=25.72  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=17.2

Q ss_pred             EEEEEcC-CCCCHHHHHHHHHhCCC
Q psy1169          17 KYIIIGD-MGVGKSCLLHQFTEQKF   40 (218)
Q Consensus        17 ki~v~G~-~g~GKStli~~l~~~~~   40 (218)
                      ||.|+|. ..+| +++...+.....
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            8999995 8899 566777765443

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=82.44  E-value=0.35  Score=34.81  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q psy1169          17 KYIIIGDMGVGKSCLLHQFTEQ   38 (218)
Q Consensus        17 ki~v~G~~g~GKStli~~l~~~   38 (218)
                      |+.|+|.+|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6789999999999998766443

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.96  E-value=0.57  Score=29.92  Aligned_cols=18  Identities=39%  Similarity=0.392  Sum_probs=14.0

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q psy1169          19 IIIGDMGVGKSCLLHQFT   36 (218)
Q Consensus        19 ~v~G~~g~GKStli~~l~   36 (218)
                      +++|+..|||||-+-+..
T Consensus        11 lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1          11 VIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEEeccccHHHHHHHHHH
Confidence            458999999998765554