Psyllid ID: psy11709

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
Protein Sequence
MTAVVQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID
Secondary Structure (PSIPRED)
cccccccccEEEcccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHccccccHHHHHHHHHcccHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccHHHHHHHHHHHHHHccccccHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHccccEcccHHHccHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHccHHHHHHHHHHHHHHHHHcccccccHHHHccHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHEcc
Coil and Loop (DISEMBL)
mtavvqpppvfIDLLLEDQALELRVYLKNLgaeisdekstkgieDDLHKIIGVCDAcfqdaneaDIESVLNSIVSMLVLINPERAENLILAFSEKLskasdaklgPVTLRVLWLLFQsleptspmryHVYYHLVQIAQNADQIKSVFKDVDHLkqqfsqcppsnEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALadpntfllhplltlkpvkfleGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKEldlnpnqiEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALadpntfllhplltlkpvkfleGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKEldlnpnqiEAFIID
Flexible Loop (DISEMBL)
mtavvqpppvfIDLLLEDQALELRVYLKNLgaeisdekstkgiEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKEldlnpnqieafiid
Low Complexity Region (SEG)
MTAVVQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKllrllhqallASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID
Disordered region (IsUnstruct)
********PVFIDLLLEDQALELRVYLKNLGAEISDE*STKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQ*************KLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELD************
Disordered Region (DISOPRED)
******P*PVFIDLLLEDQALELRVYLK*****************DLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFSEKL**********VTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYT******AREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIV**LGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYI**KLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID
Disordered Region (DISEMBL)
MTAVVQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID
Disordered Region (DISPRO)
****VQPPPVFIDLLLEDQALELRVYLKNLGAEISD**STKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAVVQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	474	2.2.26 [Sep-21-2011]
Q17D30	386	Eukaryotic translation in	N/A	N/A	0.664	0.816	0.620	1e-118
Q7Q068	385	Eukaryotic translation in	yes	N/A	0.664	0.818	0.610	1e-114
B0WTN3	386	Eukaryotic translation in	N/A	N/A	0.664	0.816	0.605	1e-112
B4MY75	387	Eukaryotic translation in	N/A	N/A	0.656	0.803	0.585	1e-109
B4QFD2	387	Eukaryotic translation in	N/A	N/A	0.656	0.803	0.579	1e-109
B4HR14	387	Eukaryotic translation in	N/A	N/A	0.656	0.803	0.579	1e-109
Q7JVI3	387	Eukaryotic translation in	yes	N/A	0.656	0.803	0.579	1e-109
B4KT65	387	Eukaryotic translation in	N/A	N/A	0.656	0.803	0.582	1e-109
B4P6M6	387	Eukaryotic translation in	N/A	N/A	0.656	0.803	0.579	1e-108
B3MCZ5	387	Eukaryotic translation in	N/A	N/A	0.656	0.803	0.579	1e-108

>sp|Q17D30|EIF3M_AEDAE Eukaryotic translation initiation factor 3 subunit M OS=Aedes aegypti GN=AAEL004347 PE=3 SV=1

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/335 (62%), Positives = 258/335 (77%), Gaps = 20/335 (5%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANE- 63
           +Q P VFID  ++DQA ELR + K+LGAEIS+EKS+KGIEDDLHKIIGVCD CF+D  + 
Sbjct: 1   MQGPAVFIDAEIDDQAQELRKFFKSLGAEISEEKSSKGIEDDLHKIIGVCDVCFKDGTQH 60

Query: 64  --ADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEP 121
              +I++VLNS+VS++V I  ER ENLILAF EK+++A D+ L  V L+ LW LF +LEP
Sbjct: 61  TLEEIDAVLNSVVSIIVSIPLERGENLILAFCEKMTRAPDSNLARVCLQSLWRLFSNLEP 120

Query: 122 TSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLAS 181
           TSP+RYHVYYHLVQ+A+ ADQ+K VF  VD LK QFSQCPPSNEQMQKL RLLH  L   
Sbjct: 121 TSPLRYHVYYHLVQVAKRADQVKEVFSGVDQLKSQFSQCPPSNEQMQKLYRLLHDVLKD- 179

Query: 182 KQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLL 241
                          + +ELA+KVMIELL TYTAENAS AREDA  CI+ ALADPNTFLL
Sbjct: 180 ---------------TNSELASKVMIELLGTYTAENASYAREDAMKCIVTALADPNTFLL 224

Query: 242 HPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRL 301
            PLL+LKPV+FLEGELIHDLL++FV+EK+ +Y  FYK HKE+ VN  GL+H++N++KMRL
Sbjct: 225 DPLLSLKPVRFLEGELIHDLLSVFVSEKLPSYLQFYKNHKEF-VNSQGLNHEQNIKKMRL 283

Query: 302 LTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           L+FMQLAE+  EM+F  +Q EL +  N++E FII+
Sbjct: 284 LSFMQLAESNPEMTFQQLQDELQIGENEVEPFIIE 318

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Aedes aegypti (taxid: 7159)

>sp|Q7Q068|EIF3M_ANOGA Eukaryotic translation initiation factor 3 subunit M OS=Anopheles gambiae GN=AGAP012281 PE=3 SV=2

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/334 (61%), Positives = 256/334 (76%), Gaps = 19/334 (5%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q P VFID  ++DQA ELR +LK LGAEIS+EKSTKGIEDDLHKIIGVCD CF+D   +
Sbjct: 1   MQGPAVFIDAEIDDQAQELRQFLKGLGAEISEEKSTKGIEDDLHKIIGVCDVCFKDNTHS 60

Query: 65  --DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPT 122
             +I++VLNSIVS++V I  ER ENLIL+F +K++KA +  L  V L+ LW LF +LE T
Sbjct: 61  PEEIDAVLNSIVSIIVSIPLERGENLILSFCDKMTKAKETSLARVCLQSLWRLFSNLEVT 120

Query: 123 SPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASK 182
           SP+RYHVYYHLVQ+A+  +Q+K VF  V+ LK QF+QCPPSNEQMQKL RLLH  L    
Sbjct: 121 SPLRYHVYYHLVQVAKQVNQVKEVFTGVEQLKAQFAQCPPSNEQMQKLYRLLHDVLKD-- 178

Query: 183 QYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLH 242
                         S +ELA+KVMIELL TYTAENAS AREDA  CI+ ALADPNTFLL 
Sbjct: 179 --------------SNSELASKVMIELLGTYTAENASYAREDAMKCIVTALADPNTFLLD 224

Query: 243 PLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLL 302
           PLL+LKPV+FLEGELIHDLL++FV+EK+ +Y +FYK HKE+ VN  GL+H++N++KMRLL
Sbjct: 225 PLLSLKPVRFLEGELIHDLLSVFVSEKLPSYLEFYKNHKEF-VNSQGLNHEQNIKKMRLL 283

Query: 303 TFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           +FMQLAE+ +EM+F  +Q EL +   ++E FII+
Sbjct: 284 SFMQLAESNSEMTFQQLQDELQIKEEEVEPFIIE 317

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Anopheles gambiae (taxid: 7165)

>sp|B0WTN3|EIF3M_CULQU Eukaryotic translation initiation factor 3 subunit M OS=Culex quinquefasciatus GN=CPIJ010525 PE=3 SV=1

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/335 (60%), Positives = 252/335 (75%), Gaps = 20/335 (5%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDAN-- 62
           +Q   +FID  +EDQA ELR + K LGAEIS++KS+KGIEDDLHKIIGVCD CF+D +  
Sbjct: 1   MQVAAIFIDAEIEDQAQELRKFFKKLGAEISEDKSSKGIEDDLHKIIGVCDVCFKDPSLH 60

Query: 63  -EADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEP 121
              +I++VLNS+VS++V I  ER ENLILAF EK++KA D KL  V L+ LW LF +LE 
Sbjct: 61  TVEEIDAVLNSVVSIIVSIPLERGENLILAFCEKMTKAPDQKLAQVCLQSLWRLFSNLEL 120

Query: 122 TSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLAS 181
           TSP+RYHVYYHLVQ+A+  DQ+K VF  V+ LK QF+QCPPSNEQMQKL RLLH  L   
Sbjct: 121 TSPLRYHVYYHLVQVAKQVDQVKEVFTGVEQLKNQFTQCPPSNEQMQKLYRLLHDVLKD- 179

Query: 182 KQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLL 241
                          + +ELA+KVMIELL TYTAENAS AREDA  CI+ ALADPNTFLL
Sbjct: 180 ---------------TNSELASKVMIELLGTYTAENASYAREDAMKCIVTALADPNTFLL 224

Query: 242 HPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRL 301
            PLL+LKPV+FLEGELIHDLL++FV+EK+  Y  FY+ HKE+ VN  GL+H++N++KMRL
Sbjct: 225 DPLLSLKPVRFLEGELIHDLLSVFVSEKLPAYLQFYQNHKEF-VNSQGLNHEQNIKKMRL 283

Query: 302 LTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           L+FMQLAE+  EM+F  +Q EL +  N +E FII+
Sbjct: 284 LSFMQLAESNPEMTFAQLQDELQIGENDVEPFIIE 318

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Culex quinquefasciatus (taxid: 7176)

>sp|B4MY75|EIF3M_DROWI Eukaryotic translation initiation factor 3 subunit M OS=Drosophila willistoni GN=Tango7 PE=3 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/328 (58%), Positives = 245/328 (74%), Gaps = 17/328 (5%)

Query: 9   PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
           PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVCD CF+D   A I+ 
Sbjct: 5   PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPAQIDG 64

Query: 69  VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
           +LNSIVS+++ I  +R EN++LA+ EK++KA +  L  V L+ LW LF +L+  SP+RYH
Sbjct: 65  ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNQPLAKVCLQSLWRLFNNLDTASPLRYH 124

Query: 129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLR 188
           VYYHLVQ+A+  DQ+  VF  VD LK QF+ CPPS+EQMQKL RLLH             
Sbjct: 125 VYYHLVQVAKQCDQVLEVFTGVDQLKSQFANCPPSSEQMQKLYRLLHDV----------- 173

Query: 189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
             TK    +  E ++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL+LK
Sbjct: 174 --TKD---TNLERSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLSLK 228

Query: 249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLA 308
           PV+FLEG+LIHDLL+IFV+EK+  Y +FY++HKE+ VN  GL+H++N++KMRLLTFMQLA
Sbjct: 229 PVRFLEGDLIHDLLSIFVSEKLPAYVEFYEEHKEF-VNSQGLNHEQNMKKMRLLTFMQLA 287

Query: 309 ETKTEMSFDMIQKELDLNPNQIEAFIID 336
           E+  EMSF+ + KEL +  N++E F+I+
Sbjct: 288 ESNAEMSFEALTKELQITENEVEPFVIE 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity). Required for constitutive protein secretion.

Drosophila willistoni (taxid: 7260)

>sp|B4QFD2|EIF3M_DROSI Eukaryotic translation initiation factor 3 subunit M OS=Drosophila simulans GN=Tango7 PE=3 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/328 (57%), Positives = 246/328 (75%), Gaps = 17/328 (5%)

Query: 9   PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
           PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVCD CF+D   + I+ 
Sbjct: 5   PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDG 64

Query: 69  VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
           +LNSIVS+++ I  +R EN++LA+ EK++KA +  LG V L+ LW LF +L+  SP+RYH
Sbjct: 65  ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASPLRYH 124

Query: 129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLR 188
           VYYHLVQ+A+  +Q+  VF  VD LK QF+ CPPS+EQMQKL RLLH             
Sbjct: 125 VYYHLVQVAKQCEQVLEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDV----------- 173

Query: 189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
             TK    +  EL++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL+LK
Sbjct: 174 --TKD---TNLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLSLK 228

Query: 249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLA 308
           PV+FLEG+LIHDLL+IFV+EK+  Y  FY+ H+E+ VN  GL+H++N++KMRLLTFMQLA
Sbjct: 229 PVRFLEGDLIHDLLSIFVSEKLPAYVQFYEDHREF-VNSQGLNHEQNMKKMRLLTFMQLA 287

Query: 309 ETKTEMSFDMIQKELDLNPNQIEAFIID 336
           E+  EM+F+ + KEL +N +++E F+I+
Sbjct: 288 ESSPEMTFETLTKELQINEDEVEPFVIE 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity). Required for constitutive protein secretion.

Drosophila simulans (taxid: 7240)

>sp|B4HR14|EIF3M_DROSE Eukaryotic translation initiation factor 3 subunit M OS=Drosophila sechellia GN=Tango7 PE=3 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/328 (57%), Positives = 246/328 (75%), Gaps = 17/328 (5%)

Query: 9   PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
           PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVCD CF+D   + I+ 
Sbjct: 5   PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDG 64

Query: 69  VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
           +LNSIVS+++ I  +R EN++LA+ EK++KA +  LG V L+ LW LF +L+  SP+RYH
Sbjct: 65  ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASPLRYH 124

Query: 129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLR 188
           VYYHLVQ+A+  +Q+  VF  VD LK QF+ CPPS+EQMQKL RLLH             
Sbjct: 125 VYYHLVQVAKQCEQVLEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDV----------- 173

Query: 189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
             TK    +  EL++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL+LK
Sbjct: 174 --TKD---TNLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLSLK 228

Query: 249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLA 308
           PV+FLEG+LIHDLL+IFV+EK+  Y  FY+ H+E+ VN  GL+H++N++KMRLLTFMQLA
Sbjct: 229 PVRFLEGDLIHDLLSIFVSEKLPAYVQFYEDHREF-VNSQGLNHEQNMKKMRLLTFMQLA 287

Query: 309 ETKTEMSFDMIQKELDLNPNQIEAFIID 336
           E+  EM+F+ + KEL +N +++E F+I+
Sbjct: 288 ESSPEMTFETLTKELQINEDEVEPFVIE 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity). Required for constitutive protein secretion.

Drosophila sechellia (taxid: 7238)

>sp|Q7JVI3|EIF3M_DROME Eukaryotic translation initiation factor 3 subunit M OS=Drosophila melanogaster GN=Tango7 PE=2 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/328 (57%), Positives = 246/328 (75%), Gaps = 17/328 (5%)

Query: 9   PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
           PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVCD CF+D   + I+ 
Sbjct: 5   PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDG 64

Query: 69  VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
           +LNSIVS+++ I  +R EN++LA+ EK++KA +  LG V L+ LW LF +L+  SP+RYH
Sbjct: 65  ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASPLRYH 124

Query: 129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLR 188
           VYYHLVQ+A+  +Q+  VF  VD LK QF+ CPPS+EQMQKL RLLH             
Sbjct: 125 VYYHLVQVAKQCEQVLEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDV----------- 173

Query: 189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
             TK    +  EL++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL+LK
Sbjct: 174 --TKD---TNLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLSLK 228

Query: 249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLA 308
           PV+FLEG+LIHDLL+IFV+EK+  Y  FY+ H+E+ VN  GL+H++N++KMRLLTFMQLA
Sbjct: 229 PVRFLEGDLIHDLLSIFVSEKLPAYVQFYEDHREF-VNSQGLNHEQNMKKMRLLTFMQLA 287

Query: 309 ETKTEMSFDMIQKELDLNPNQIEAFIID 336
           E+  EM+F+ + KEL +N +++E F+I+
Sbjct: 288 ESSPEMTFETLTKELQINEDEVEPFVIE 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity). Required for constitutive protein secretion.

Drosophila melanogaster (taxid: 7227)

>sp|B4KT65|EIF3M_DROMO Eukaryotic translation initiation factor 3 subunit M OS=Drosophila mojavensis GN=Tango7 PE=3 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/328 (58%), Positives = 246/328 (75%), Gaps = 17/328 (5%)

Query: 9   PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
           PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVC+ CF+D   A I+ 
Sbjct: 5   PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCEVCFKDGEPAQIDG 64

Query: 69  VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
           +LNSIVS+++ I  +R EN++LA+ EK++KA +  L  V L+ LW LF +L+  SP+RYH
Sbjct: 65  ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNQPLAKVCLQSLWRLFNNLDTASPLRYH 124

Query: 129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLR 188
           VYYHLVQ+A+  DQ+  VF  VD LK QF+ CPPS+EQMQKL RLLH             
Sbjct: 125 VYYHLVQVAKQCDQVLEVFTGVDQLKSQFANCPPSSEQMQKLYRLLHDV----------- 173

Query: 189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
             TK    +  EL++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL+LK
Sbjct: 174 --TKD---TNLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLSLK 228

Query: 249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLA 308
           PV+FLEG+LIHDLL+IFV++K+ +Y  FY+ HKE+ VN  GL+H++N++KMRLLTFMQLA
Sbjct: 229 PVRFLEGDLIHDLLSIFVSDKLPSYVQFYEDHKEF-VNSQGLNHEQNMKKMRLLTFMQLA 287

Query: 309 ETKTEMSFDMIQKELDLNPNQIEAFIID 336
           E+  EM+FD + KEL +N +++E F+I+
Sbjct: 288 ESYPEMTFDTLTKELQINEDEVEPFVIE 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity). Required for constitutive protein secretion.

Drosophila mojavensis (taxid: 7230)

>sp|B4P6M6|EIF3M_DROYA Eukaryotic translation initiation factor 3 subunit M OS=Drosophila yakuba GN=Tango7 PE=2 SV=1

 Score =  394 bits (1011), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/328 (57%), Positives = 245/328 (74%), Gaps = 17/328 (5%)

Query: 9   PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
           PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVCD CF+D   + I+ 
Sbjct: 5   PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDG 64

Query: 69  VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
           +LNSIVS+++ I  +R EN++LA+ EK++KA +  LG V L+ LW LF +L+  SP+RYH
Sbjct: 65  ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASPLRYH 124

Query: 129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLR 188
           VYYHLVQ+A+  +Q+  VF  VD LK QF+ CPPS+EQMQKL RLLH             
Sbjct: 125 VYYHLVQVAKQCEQVLEVFTGVDQLKSQFANCPPSSEQMQKLYRLLHDV----------- 173

Query: 189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
             TK    +  EL++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL LK
Sbjct: 174 --TKD---TNLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLALK 228

Query: 249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLA 308
           PV+FLEG+LIHDLL+IFV+EK+  Y  FY+ H+E+ VN  GL+H++N++KMRLLTFMQLA
Sbjct: 229 PVRFLEGDLIHDLLSIFVSEKLPAYVQFYEDHREF-VNSQGLNHEQNMKKMRLLTFMQLA 287

Query: 309 ETKTEMSFDMIQKELDLNPNQIEAFIID 336
           E+  EM+F+ + KEL +N +++E F+I+
Sbjct: 288 ESSPEMTFETLTKELQINEDEVEPFVIE 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity). Required for constitutive protein secretion.

Drosophila yakuba (taxid: 7245)

>sp|B3MCZ5|EIF3M_DROAN Eukaryotic translation initiation factor 3 subunit M OS=Drosophila ananassae GN=Tango7 PE=3 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/328 (57%), Positives = 245/328 (74%), Gaps = 17/328 (5%)

Query: 9   PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
           PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVCD CF+D   + I+ 
Sbjct: 5   PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDG 64

Query: 69  VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
           +LNSIVS+++ I  +R EN++LA+ EK++KA +  L  V L+ LW LF +L+  SP+RYH
Sbjct: 65  ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNQPLAKVCLQSLWRLFNNLDTASPLRYH 124

Query: 129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLR 188
           VYYHLVQ+A+  DQ+  VF  VD LK QF+ CPPS+EQMQKL RLLH             
Sbjct: 125 VYYHLVQVAKQCDQVLEVFTGVDQLKSQFANCPPSSEQMQKLYRLLHDV----------- 173

Query: 189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
             TK    +  EL++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL+LK
Sbjct: 174 --TKD---TNLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLSLK 228

Query: 249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLA 308
           PV+FLEG+LIHDLL+IFV++K+ +Y  FY+ HKE+ VN  GL+H++N++KMRLLTFMQLA
Sbjct: 229 PVRFLEGDLIHDLLSIFVSDKLPSYVQFYEDHKEF-VNSQGLNHEQNMKKMRLLTFMQLA 287

Query: 309 ETKTEMSFDMIQKELDLNPNQIEAFIID 336
           E+  EM+FD + KEL +  +++E F+I+
Sbjct: 288 ESSPEMTFDTLTKELQITEDEVEPFVIE 315

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity). Required for constitutive protein secretion.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
340729222	391	PREDICTED: eukaryotic translation initia	0.668	0.810	0.668	1e-121
91091954	384	PREDICTED: similar to dendritic cell pro	0.666	0.822	0.638	1e-120
328778038	381	PREDICTED: eukaryotic translation initia	0.668	0.832	0.662	1e-120
307195267	391	Eukaryotic translation initiation factor	0.668	0.810	0.665	1e-119
383852471	391	PREDICTED: eukaryotic translation initia	0.668	0.810	0.662	1e-118
307183293	391	Eukaryotic translation initiation factor	0.668	0.810	0.659	1e-118
156542482	392	PREDICTED: eukaryotic translation initia	0.668	0.808	0.650	1e-118
332373502	388	unknown [Dendroctonus ponderosae]	0.664	0.811	0.631	1e-116
157105605	386	dendritic cell protein [Aedes aegypti] g	0.664	0.816	0.620	1e-116
380028850	376	PREDICTED: eukaryotic translation initia	0.637	0.803	0.671	1e-116

>gi|340729222|ref|XP_003402905.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Bombus terrestris] gi|350417143|ref|XP_003491277.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Bombus impatiens]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/332 (66%), Positives = 270/332 (81%), Gaps = 15/332 (4%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q PP+F++L LEDQA ELR+Y KNLGAEIS+EKS KGIEDDLHKIIGVC+ACF++ NE+
Sbjct: 1   MQVPPIFMELPLEDQAQELRIYFKNLGAEISEEKSPKGIEDDLHKIIGVCEACFKEGNES 60

Query: 65  DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
           +IE+VLN IVS++++I  ERAENLILAF EKL+KA   KLG V L+ LWLLFQSL   SP
Sbjct: 61  EIETVLNDIVSIMIVIPTERAENLILAFCEKLTKAPGYKLGLVCLKALWLLFQSLPDDSP 120

Query: 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQY 184
           MRYHVYYHLVQIA+N DQ+K+V+  +D LKQQF+  PPSNEQMQKLLRLLH+ LL+    
Sbjct: 121 MRYHVYYHLVQIARNVDQVKAVYGGIDQLKQQFASLPPSNEQMQKLLRLLHEVLLS---- 176

Query: 185 RLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL 244
                      C + E AA VM+ELL TYTAENAS AREDAQ CILAALADPNTFLL PL
Sbjct: 177 -----------CKQGEQAAAVMVELLGTYTAENASAAREDAQRCILAALADPNTFLLDPL 225

Query: 245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF 304
           L LKPV+FLEGELIHDLL +FV +K+  Y DFY+ HKE++ ++LGL+H++N++KMRLLTF
Sbjct: 226 LALKPVRFLEGELIHDLLLVFVQDKLPAYLDFYQHHKEFVEHQLGLNHEQNMKKMRLLTF 285

Query: 305 MQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           MQLAET  EMSFD IQ+EL +N +++E+FIID
Sbjct: 286 MQLAETNPEMSFDTIQEELQINEDEVESFIID 317

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091954|ref|XP_968265.1| PREDICTED: similar to dendritic cell protein [Tribolium castaneum] gi|270000777|gb|EEZ97224.1| hypothetical protein TcasGA2_TC011022 [Tribolium castaneum]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/332 (63%), Positives = 266/332 (80%), Gaps = 16/332 (4%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q PPVFID+  EDQA ELR+YLK+LGAEIS+EKS KGIEDDLHKIIGVC+ACF++  E 
Sbjct: 1   MQVPPVFIDVSPEDQAQELRIYLKSLGAEISEEKSVKGIEDDLHKIIGVCEACFKEGQEP 60

Query: 65  DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
           ++E VLN IVS++VLI  +R+EN+ILAF +KL KA   KLG V LR LWLLFQSL+ TSP
Sbjct: 61  EVEMVLNDIVSIMVLIPADRSENIILAFCQKLLKAQGPKLGLVCLRALWLLFQSLDETSP 120

Query: 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQY 184
           MRYHVYYHL+ IA+  DQ+KSVF+D++HLKQQF+ CPP++EQ+Q L RLLHQ LL S   
Sbjct: 121 MRYHVYYHLILIAEKTDQVKSVFQDIEHLKQQFAPCPPTSEQLQILYRLLHQVLLKS--- 177

Query: 185 RLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL 244
                       + +E AAKVMIELL TYT +NAS AREDA  CI++AL DPNTFLL PL
Sbjct: 178 ------------NHSEQAAKVMIELLGTYTDKNASHAREDAIKCIVSALGDPNTFLLDPL 225

Query: 245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF 304
           L LKPVKFLEGELIHDLLNIFV+E + TY  FY++HKE++ ++ GL+H++N++KMRLL+F
Sbjct: 226 LALKPVKFLEGELIHDLLNIFVSENLATYLKFYQEHKEFVTSQ-GLNHEKNMQKMRLLSF 284

Query: 305 MQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           MQLAET  E+SFD+I++EL +   ++EAFII+
Sbjct: 285 MQLAETNPEISFDVIERELQIKAEEVEAFIIE 316

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778038|ref|XP_393333.3| PREDICTED: eukaryotic translation initiation factor 3 subunit M [Apis mellifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/332 (66%), Positives = 268/332 (80%), Gaps = 15/332 (4%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q PP+F++L LEDQA ELR+Y KNLGAEIS+EKS KGIEDDLHKIIGVC+ACF++ NE+
Sbjct: 1   MQVPPIFMELPLEDQAQELRIYFKNLGAEISEEKSPKGIEDDLHKIIGVCEACFKEGNES 60

Query: 65  DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
           +IE+VLN IVS++++I  ERAENLILAF EKL+KA   KLG V L+ LWLLFQSL   SP
Sbjct: 61  EIETVLNDIVSIMIVIPTERAENLILAFCEKLTKAPGYKLGLVCLKALWLLFQSLPDDSP 120

Query: 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQY 184
           MRYHVYYHLVQIA+N DQ+K+V+  +D LKQQF+  PPSNEQMQKLLRLLH+ LL+    
Sbjct: 121 MRYHVYYHLVQIARNVDQVKAVYGGIDQLKQQFASLPPSNEQMQKLLRLLHEVLLS---- 176

Query: 185 RLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL 244
                      C + E AA VM+ELL TYTAENAS AREDAQ CILAAL DPNTFLL PL
Sbjct: 177 -----------CKQGEQAAAVMVELLGTYTAENASAAREDAQRCILAALVDPNTFLLDPL 225

Query: 245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF 304
           L LKPV+FLEGELIHDLL +FV +K+  Y  FY+ HKE++ ++LGL+H++N++KMRLLTF
Sbjct: 226 LALKPVRFLEGELIHDLLLVFVQDKLPAYLHFYQHHKEFVEHQLGLNHEQNMKKMRLLTF 285

Query: 305 MQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           MQLAET  EMSFD IQ+EL +N +++E+FIID
Sbjct: 286 MQLAETNPEMSFDTIQEELQINEDEVESFIID 317

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195267|gb|EFN77223.1| Eukaryotic translation initiation factor 3 subunit M [Harpegnathos saltator]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/332 (66%), Positives = 268/332 (80%), Gaps = 15/332 (4%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q PP+F++L L+DQA ELRVY K+LGAEIS+EKS KGIEDDLHKIIGVC+ACF++ NE+
Sbjct: 1   MQVPPIFMELPLDDQAQELRVYFKSLGAEISEEKSPKGIEDDLHKIIGVCEACFKEGNES 60

Query: 65  DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
           +IESVLN IVS+++LI  ERAENLILAF EKL KA   KLG V L+ LWLLFQSL   SP
Sbjct: 61  EIESVLNDIVSIMILIPTERAENLILAFCEKLIKAPGYKLGLVCLKALWLLFQSLADDSP 120

Query: 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQY 184
           MRYHVYYHLVQIA+N DQ+K+V+  +D LKQQF+  PPSNEQMQKLLRLLH+ LL+    
Sbjct: 121 MRYHVYYHLVQIARNVDQVKAVYGGIDQLKQQFASFPPSNEQMQKLLRLLHEVLLS---- 176

Query: 185 RLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL 244
                      C + E AA VM+ELL TYTAENAS AREDAQ CILAALADPNTFLL PL
Sbjct: 177 -----------CKQGEQAAAVMVELLGTYTAENASAAREDAQRCILAALADPNTFLLDPL 225

Query: 245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF 304
           L LKPV+FLEGELIHDLL +FV +K+  Y  FY+ HKE++ ++LGL+H++N++KMRLLTF
Sbjct: 226 LALKPVRFLEGELIHDLLLVFVQDKLPAYLYFYQHHKEFVEHQLGLNHEQNMKKMRLLTF 285

Query: 305 MQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           MQLAET  EMSFD IQ+EL ++ +++E+FIID
Sbjct: 286 MQLAETNPEMSFDTIQEELQISESEVESFIID 317

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852471|ref|XP_003701750.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Megachile rotundata]

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/332 (66%), Positives = 265/332 (79%), Gaps = 15/332 (4%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q PP+F++L LEDQA ELRVY K+LGAEIS+EKS KGIEDDLHKIIGVC+ACF++ NE 
Sbjct: 1   MQVPPIFMELPLEDQAQELRVYFKSLGAEISEEKSPKGIEDDLHKIIGVCEACFKEGNET 60

Query: 65  DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
           +IE+VLN IVS+L++I  ERAENLILAF EKL+KA   K G V L+ LWLLFQSL   SP
Sbjct: 61  EIETVLNDIVSILIVIPTERAENLILAFCEKLTKAPGYKFGLVCLKALWLLFQSLSDDSP 120

Query: 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQY 184
           MRYHVYYHLVQIA+N DQ+K+V+  +D LKQQF+  PPSNEQMQKLLRLLH+ LL+    
Sbjct: 121 MRYHVYYHLVQIARNVDQVKAVYSGIDQLKQQFASFPPSNEQMQKLLRLLHEVLLS---- 176

Query: 185 RLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL 244
                      C + E AA VM+ELL TYTAENAS AREDAQ CILAALADPNTFLL PL
Sbjct: 177 -----------CKQGEQAAAVMVELLGTYTAENASAAREDAQRCILAALADPNTFLLDPL 225

Query: 245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF 304
           L LKPV+FLEGELIHDLL +FV +K+  Y  FY+ HKE++ ++LGL+H +N++KMRLLTF
Sbjct: 226 LALKPVRFLEGELIHDLLLVFVQDKLPAYLLFYQHHKEFVEHQLGLNHVQNMKKMRLLTF 285

Query: 305 MQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           MQLAET  EMSFD IQ+EL +  +++E+FIID
Sbjct: 286 MQLAETNPEMSFDTIQEELQITEDEVESFIID 317

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183293|gb|EFN70162.1| Eukaryotic translation initiation factor 3 subunit M [Camponotus floridanus]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/332 (65%), Positives = 267/332 (80%), Gaps = 15/332 (4%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q PP+F++L L+DQA ELRVY K+LGAEIS+EKS KGIEDDLHKIIGVC+ACF++ NE 
Sbjct: 1   MQVPPIFMELPLDDQAQELRVYFKSLGAEISEEKSPKGIEDDLHKIIGVCEACFKEGNEN 60

Query: 65  DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
           +IE+VLN IVS+++LI  ERAENLILAF EKL KA   KLG V L+ LWLLFQSL   SP
Sbjct: 61  EIETVLNDIVSIMILIPTERAENLILAFCEKLVKAPGYKLGLVCLKALWLLFQSLADDSP 120

Query: 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQY 184
           MRYHVYYHLVQIA+N DQ+K+V+  +D LKQQF+  PPSNEQMQKLLRLLH+ LL+    
Sbjct: 121 MRYHVYYHLVQIARNVDQVKAVYSGIDQLKQQFASFPPSNEQMQKLLRLLHEVLLS---- 176

Query: 185 RLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL 244
                      C + E AA VM+ELL TYTAENAS AREDAQ CILAALADPNTFLL PL
Sbjct: 177 -----------CKQGEQAAAVMVELLGTYTAENASAAREDAQRCILAALADPNTFLLDPL 225

Query: 245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF 304
           L LKPV+FLEGELIHDLL +FV +K+  Y  FY+ H+E++ ++LGL+H++N++KMRLLTF
Sbjct: 226 LALKPVRFLEGELIHDLLLVFVQDKLPAYLHFYQHHREFVEHQLGLNHEQNMKKMRLLTF 285

Query: 305 MQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           MQLAET  EMSFD IQ+EL ++ +++E+FIID
Sbjct: 286 MQLAETNPEMSFDTIQEELQISESEVESFIID 317

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542482|ref|XP_001600090.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Nasonia vitripennis]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/332 (65%), Positives = 262/332 (78%), Gaps = 15/332 (4%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q P VF+D   EDQA ELR+Y K+LGAEIS+EKS +GIEDDLHKIIGVCDACF++ NEA
Sbjct: 1   MQGPAVFMDGTTEDQAQELRIYFKSLGAEISEEKSPRGIEDDLHKIIGVCDACFKEGNEA 60

Query: 65  DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
           +IE++LN IVS+++L+  ERAEN++LAF EKL+KA   KLG V L+ LWLLFQSL   S 
Sbjct: 61  EIETILNDIVSIMILVPTERAENIVLAFCEKLTKAPGYKLGLVCLKALWLLFQSLPEDSS 120

Query: 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQY 184
           MRYHVYYHLVQIA+N DQ+K+V+  VD LKQQF+ CPP+NEQMQKLLRLLH+ LL     
Sbjct: 121 MRYHVYYHLVQIARNVDQVKAVYNGVDQLKQQFATCPPANEQMQKLLRLLHEVLLG---- 176

Query: 185 RLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL 244
                      C + E AA VM+ELL TYT+ENAS AREDAQ CILAALADPNTFLL PL
Sbjct: 177 -----------CKQGEQAAAVMVELLGTYTSENASAAREDAQRCILAALADPNTFLLDPL 225

Query: 245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF 304
           L LKPV+FLEGELIHDLL IFV EK+  Y +F+K HKE++ + LGL+H++N++KMRLLTF
Sbjct: 226 LALKPVRFLEGELIHDLLLIFVQEKLPAYLEFHKDHKEFVESNLGLNHEQNMKKMRLLTF 285

Query: 305 MQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           MQLAET  EMSF  IQ EL +  +++E+FIID
Sbjct: 286 MQLAETNPEMSFQTIQNELQIEEDKVESFIID 317

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373502|gb|AEE61892.1| unknown [Dendroctonus ponderosae]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/331 (63%), Positives = 257/331 (77%), Gaps = 16/331 (4%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
           +Q PPVFID+ LEDQ  ELR YLK+LGAEIS+E+S KGIEDDLHKIIGVCDACF++ NE 
Sbjct: 1   MQVPPVFIDIPLEDQTQELRGYLKSLGAEISEERSPKGIEDDLHKIIGVCDACFKEGNEP 60

Query: 65  DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
            +E VLN IVS++VL++PERAEN+ILAF EKL+KA   KLG V LR LWLL+QSL+  S 
Sbjct: 61  QVELVLNDIVSIMVLVSPERAENIILAFCEKLTKAQGQKLGEVCLRALWLLYQSLDERSA 120

Query: 125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQY 184
           MRY VYYHL+QIA+  DQIKS+F+D++ LKQQF  CP SNE++QKL RLLHQ L+ S Q 
Sbjct: 121 MRYPVYYHLLQIARQTDQIKSIFQDIEKLKQQFKLCPLSNEELQKLYRLLHQVLVKSNQ- 179

Query: 185 RLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL 244
                         +E AAKVMIELL TYT + AS AREDA  CI  A+ADPNTFLL PL
Sbjct: 180 --------------SEQAAKVMIELLGTYTDKTASHAREDAIRCITTAIADPNTFLLEPL 225

Query: 245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF 304
           L LKPV  L+G+LIHDLL+IFV+E +  Y  FY++HKE+I ++ GL+H++N+RKMRLL+F
Sbjct: 226 LDLKPVHILKGQLIHDLLSIFVSENLAAYLKFYQEHKEFITSQ-GLNHEQNMRKMRLLSF 284

Query: 305 MQLAETKTEMSFDMIQKELDLNPNQIEAFII 335
           MQLAET  EMSFD I++EL +   ++EAFII
Sbjct: 285 MQLAETTPEMSFDTIERELQIKKEEVEAFII 315

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105605|ref|XP_001648944.1| dendritic cell protein [Aedes aegypti] gi|122106498|sp|Q17D30.1|EIF3M_AEDAE RecName: Full=Eukaryotic translation initiation factor 3 subunit M; Short=eIF3m gi|108880066|gb|EAT44291.1| AAEL004347-PA [Aedes aegypti]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/335 (62%), Positives = 258/335 (77%), Gaps = 20/335 (5%)

Query: 5   VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANE- 63
           +Q P VFID  ++DQA ELR + K+LGAEIS+EKS+KGIEDDLHKIIGVCD CF+D  + 
Sbjct: 1   MQGPAVFIDAEIDDQAQELRKFFKSLGAEISEEKSSKGIEDDLHKIIGVCDVCFKDGTQH 60

Query: 64  --ADIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEP 121
              +I++VLNS+VS++V I  ER ENLILAF EK+++A D+ L  V L+ LW LF +LEP
Sbjct: 61  TLEEIDAVLNSVVSIIVSIPLERGENLILAFCEKMTRAPDSNLARVCLQSLWRLFSNLEP 120

Query: 122 TSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLAS 181
           TSP+RYHVYYHLVQ+A+ ADQ+K VF  VD LK QFSQCPPSNEQMQKL RLLH  L   
Sbjct: 121 TSPLRYHVYYHLVQVAKRADQVKEVFSGVDQLKSQFSQCPPSNEQMQKLYRLLHDVLKD- 179

Query: 182 KQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLL 241
                          + +ELA+KVMIELL TYTAENAS AREDA  CI+ ALADPNTFLL
Sbjct: 180 ---------------TNSELASKVMIELLGTYTAENASYAREDAMKCIVTALADPNTFLL 224

Query: 242 HPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRL 301
            PLL+LKPV+FLEGELIHDLL++FV+EK+ +Y  FYK HKE+ VN  GL+H++N++KMRL
Sbjct: 225 DPLLSLKPVRFLEGELIHDLLSVFVSEKLPSYLQFYKNHKEF-VNSQGLNHEQNIKKMRL 283

Query: 302 LTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
           L+FMQLAE+  EM+F  +Q EL +  N++E FII+
Sbjct: 284 LSFMQLAESNPEMTFQQLQDELQIGENEVEPFIIE 318

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028850|ref|XP_003698098.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M-like, partial [Apis florea]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/317 (67%), Positives = 257/317 (81%), Gaps = 15/317 (4%)

Query: 20  ALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVL 79
           A ELR+Y KNLGAEIS+EKS KGIEDDLHKIIGVC+ACF++ NE++IE+VLN IVS++++
Sbjct: 1   AQELRIYFKNLGAEISEEKSPKGIEDDLHKIIGVCEACFKEGNESEIETVLNDIVSIMIV 60

Query: 80  INPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQN 139
           I  ERAENLILAF EKL+KA   KLG V L+ LWLLFQSL   SPMRYHVYYHLVQIA+N
Sbjct: 61  IPTERAENLILAFCEKLTKAPGYKLGLVCLKALWLLFQSLPDDSPMRYHVYYHLVQIARN 120

Query: 140 ADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKT 199
            DQ+K+V+  +D LKQQF+  PPSNEQMQKLLRLLH+ LL+               C + 
Sbjct: 121 VDQVKAVYGGIDQLKQQFASLPPSNEQMQKLLRLLHEVLLS---------------CKQG 165

Query: 200 ELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIH 259
           E AA VM+ELL TYTAENAS AREDAQ CILAALADPNTFLL PLL LKPV+FLEGELIH
Sbjct: 166 EQAAAVMVELLGTYTAENASAAREDAQRCILAALADPNTFLLDPLLALKPVRFLEGELIH 225

Query: 260 DLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMI 319
           DLL +FV +K+  Y DFY+ HKE++ ++LGL+H++N++KMRLLTFMQLAET  EMSFD I
Sbjct: 226 DLLLVFVQDKLPAYLDFYQHHKEFVEHQLGLNHEQNMKKMRLLTFMQLAETNPEMSFDTI 285

Query: 320 QKELDLNPNQIEAFIID 336
           Q+EL +N +++E+FIID
Sbjct: 286 QEELQINEDEVESFIID 302

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	474
FB|FBgn0033902	387	Tango7 "Transport and Golgi or	0.548	0.671	0.583	2e-81
UNIPROTKB|Q292F0	387	Tango7 "Eukaryotic translation	0.548	0.671	0.583	3.2e-81
UNIPROTKB|F1NZE2	375	EIF3M "Eukaryotic translation	0.662	0.837	0.450	3.5e-68
UNIPROTKB|Q5ZJ64	374	EIF3M "Eukaryotic translation	0.654	0.828	0.452	4.4e-68
UNIPROTKB|E2QWG8	374	EIF3M "Uncharacterized protein	0.654	0.828	0.446	5.6e-68
UNIPROTKB|Q7L2H7	374	EIF3M "Eukaryotic translation	0.654	0.828	0.446	5.6e-68
UNIPROTKB|F1SGR0	374	EIF3M "Uncharacterized protein	0.654	0.828	0.446	5.6e-68
MGI|MGI:1351744	374	Eif3m "eukaryotic translation	0.654	0.828	0.443	7.2e-68
UNIPROTKB|F1N5F7	374	EIF3M "Eukaryotic translation	0.654	0.828	0.446	7.2e-68
UNIPROTKB|Q3T148	373	EIF3M "Eukaryotic translation	0.651	0.828	0.446	4e-67

FB|FBgn0033902 Tango7 "Transport and Golgi organization 7" [Drosophila melanogaster (taxid:7227)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 161/276 (58%), Positives = 203/276 (73%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVCD CF+D   + I+ 
Sbjct:     5 PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDG 64

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             +LNSIVS+++ I  +R EN++LA+ EK++KA +  LG V L+ LW LF +L+  SP+RYH
Sbjct:    65 ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASPLRYH 124

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VYYHLVQ+A+  +Q+  VF  VD LK QF+ CPPS+EQMQK              YRLL 
Sbjct:   125 VYYHLVQVAKQCEQVLEVFSGVDQLKSQFANCPPSSEQMQKL-------------YRLLH 171

Query:   189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
               TK +     EL++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL+LK
Sbjct:   172 DVTKDT---NLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLSLK 228

Query:   249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYI 284
             PV+FLEG+LIHDLL+IFV+EK+  Y  FY+ H+E++
Sbjct:   229 PVRFLEGDLIHDLLSIFVSEKLPAYVQFYEDHREFV 264

GO:0003824 "catalytic activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007030 "Golgi organization" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

UNIPROTKB|Q292F0 Tango7 "Eukaryotic translation initiation factor 3 subunit M" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 161/276 (58%), Positives = 203/276 (73%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             PVFIDL L++Q  ELR Y K LGAEIS EKS KG+EDDLHKIIGVCD CF+D   + I+ 
Sbjct:     5 PVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDG 64

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             +LNSIVS+++ I  +R EN++LA+ EK++KA +  LG V L+ LW LF +L+  SP+RYH
Sbjct:    65 ILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNQPLGKVCLQSLWRLFNNLDTASPLRYH 124

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VYYHLVQ+A+  +Q+  VF  VD LK QF+ CPPS+EQMQK              YRLL 
Sbjct:   125 VYYHLVQVAKQCEQVLEVFTGVDQLKTQFANCPPSSEQMQKL-------------YRLLH 171

Query:   189 MQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLK 248
               TK +     EL++KVMIELL TYTA+NA  AREDA  CI+ ALADPNTFLL PLL LK
Sbjct:   172 DVTKDT---NMELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTFLLDPLLALK 228

Query:   249 PVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYI 284
             PV+FLEG+LIHDLL+IFV++K+ +Y  FY+ HKE++
Sbjct:   229 PVRFLEGDLIHDLLSIFVSDKLPSYVQFYEDHKEFV 264

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

UNIPROTKB|F1NZE2 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Gallus gallus (taxid:9031)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 150/333 (45%), Positives = 219/333 (65%)

Query:     5 VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEA 64
             V   P FID+  EDQA ELR YLK+ GAEIS+E S  G+  DL +II VCD C ++ ++ 
Sbjct:     1 VMSVPAFIDITEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEVCDVCLKE-DDK 59

Query:    65 DIESVLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSP 124
             D+ESV+NS+VS+L+++ P++ E LI +  EKL K  + +   + L++L  LF  ++  +P
Sbjct:    60 DVESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTP 119

Query:   125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQY 184
             +RY VY  L+++A +   I+ +  ++D +++  S    S +                K++
Sbjct:   120 VRYTVYCSLLKVASSCGAIQYIPTELDQVRKWISDWNLSTD----------------KKH 163

Query:   185 RLLRMQTKSSL-CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHP 243
              LLR+     + C K++ AAKVM+ELL +YT +NASQAR DA  CI+ AL DPNTFL   
Sbjct:   164 TLLRLLYDVLVDCKKSDTAAKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNTFLFDH 223

Query:   244 LLTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLT 303
             LL LKPVKFLEGELIHDLL IFV+ K+ +Y  FY+ +K++I + LGL H++N+ KMRLLT
Sbjct:   224 LLALKPVKFLEGELIHDLLTIFVSAKLVSYVKFYQNNKDFI-DSLGLLHEQNMAKMRLLT 282

Query:   304 FMQLAETKTEMSFDMIQKELDLNPNQIEAFIID 336
             FM +A    E+SFD +Q+EL +  + +EAF+ID
Sbjct:   283 FMGMAVENKEISFDTMQQELQIGADDVEAFVID 315

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

UNIPROTKB|Q5ZJ64 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Gallus gallus (taxid:9031)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 149/329 (45%), Positives = 218/329 (66%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             P FID+  EDQA ELR YLK+ GAEIS+E S  G+  DL +II VCD C ++ ++ D+ES
Sbjct:     4 PAFIDITEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEVCDVCLKE-DDKDVES 62

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             V+NS+VS+L+++ P++ E LI +  EKL K  + +   + L++L  LF  ++  +P+RY 
Sbjct:    63 VMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYT 122

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VY  L+++A +   I+ +  ++D +++  S    S +                K++ LLR
Sbjct:   123 VYCSLLKVASSCGAIQYIPTELDQVRKWISDWNLSTD----------------KKHTLLR 166

Query:   189 MQTKSSL-CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTL 247
             +     + C K++ AAKVM+ELL +YT +NASQAR DA  CI+ AL DPNTFL   LL L
Sbjct:   167 LLYDVLVDCKKSDTAAKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNTFLFDHLLAL 226

Query:   248 KPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQL 307
             KPVKFLEGELIHDLL IFV+ K+ +Y  FY+ +K++I + LGL H++N+ KMRLLTFM +
Sbjct:   227 KPVKFLEGELIHDLLTIFVSAKLVSYVKFYQNNKDFI-DSLGLLHEQNMAKMRLLTFMGM 285

Query:   308 AETKTEMSFDMIQKELDLNPNQIEAFIID 336
             A    E+SFD +Q+EL +  + +EAF+ID
Sbjct:   286 AVENKEISFDTMQQELQIGADDVEAFVID 314

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2QWG8 EIF3M "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 147/329 (44%), Positives = 219/329 (66%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             P FID+  EDQA ELR YLK+ GAEIS+E S  G+  DL +II  CD C ++ ++ D+ES
Sbjct:     4 PAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKE-DDKDVES 62

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             V+NS+VS+L+++ P++ E LI +  EKL K  + +   + L++L  LF  ++  +P+RY 
Sbjct:    63 VMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYT 122

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VY  L+++A +   I+ +  ++D +++  S    + E                K++ LLR
Sbjct:   123 VYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTE----------------KKHTLLR 166

Query:   189 MQTKSSL-CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTL 247
             +  ++ + C K++ A+KVM+ELL +YT +NASQAR DA  CI+ AL DPN FL   LLTL
Sbjct:   167 LLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTL 226

Query:   248 KPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQL 307
             KPVKFLEGELIHDLL IFV+ K+ +Y  FY+ +K++I + LGL H++N+ KMRLLTFM +
Sbjct:   227 KPVKFLEGELIHDLLTIFVSAKLASYVKFYQNNKDFI-DSLGLLHEQNMAKMRLLTFMGM 285

Query:   308 AETKTEMSFDMIQKELDLNPNQIEAFIID 336
             A    E+SFD +Q+EL +  + +EAF+ID
Sbjct:   286 AVENKEISFDTMQQELQIGADDVEAFVID 314

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

UNIPROTKB|Q7L2H7 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Homo sapiens (taxid:9606)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 147/329 (44%), Positives = 219/329 (66%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             P FID+  EDQA ELR YLK+ GAEIS+E S  G+  DL +II  CD C ++ ++ D+ES
Sbjct:     4 PAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKE-DDKDVES 62

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             V+NS+VS+L+++ P++ E LI +  EKL K  + +   + L++L  LF  ++  +P+RY 
Sbjct:    63 VMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYT 122

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VY  L+++A +   I+ +  ++D +++  S    + E                K++ LLR
Sbjct:   123 VYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTE----------------KKHTLLR 166

Query:   189 MQTKSSL-CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTL 247
             +  ++ + C K++ A+KVM+ELL +YT +NASQAR DA  CI+ AL DPN FL   LLTL
Sbjct:   167 LLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTL 226

Query:   248 KPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQL 307
             KPVKFLEGELIHDLL IFV+ K+ +Y  FY+ +K++I + LGL H++N+ KMRLLTFM +
Sbjct:   227 KPVKFLEGELIHDLLTIFVSAKLASYVKFYQNNKDFI-DSLGLLHEQNMAKMRLLTFMGM 285

Query:   308 AETKTEMSFDMIQKELDLNPNQIEAFIID 336
             A    E+SFD +Q+EL +  + +EAF+ID
Sbjct:   286 AVENKEISFDTMQQELQIGADDVEAFVID 314

GO:0003743 "translation initiation factor activity" evidence=IC

GO:0006413 "translational initiation" evidence=IC

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SGR0 EIF3M "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 147/329 (44%), Positives = 219/329 (66%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             P FID+  EDQA ELR YLK+ GAEIS+E S  G+  DL +II  CD C ++ ++ D+ES
Sbjct:     4 PAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKE-DDKDVES 62

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             V+NS+VS+L+++ P++ E LI +  EKL K  + +   + L++L  LF  ++  +P+RY 
Sbjct:    63 VMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYT 122

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VY  L+++A +   I+ +  ++D +++  S    + E                K++ LLR
Sbjct:   123 VYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTE----------------KKHTLLR 166

Query:   189 MQTKSSL-CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTL 247
             +  ++ + C K++ A+KVM+ELL +YT +NASQAR DA  CI+ AL DPN FL   LLTL
Sbjct:   167 LLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTL 226

Query:   248 KPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQL 307
             KPVKFLEGELIHDLL IFV+ K+ +Y  FY+ +K++I + LGL H++N+ KMRLLTFM +
Sbjct:   227 KPVKFLEGELIHDLLTIFVSAKLASYVKFYQNNKDFI-DSLGLLHEQNMAKMRLLTFMGM 285

Query:   308 AETKTEMSFDMIQKELDLNPNQIEAFIID 336
             A    E+SFD +Q+EL +  + +EAF+ID
Sbjct:   286 AVENKEISFDTMQQELQIGADDVEAFVID 314

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

MGI|MGI:1351744 Eif3m "eukaryotic translation initiation factor 3, subunit M" [Mus musculus (taxid:10090)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 146/329 (44%), Positives = 219/329 (66%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             P FID+  EDQA ELR YLK+ GAE+S+E S  G+  DL +II  CD C ++ ++ D+ES
Sbjct:     4 PAFIDISEEDQAAELRAYLKSKGAELSEENSEGGLHVDLAQIIEACDVCLKE-DDKDVES 62

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             V+NS+VS+L+++ P++ E LI +  EKL K  + +   + L++L  LF  ++  +P+RY 
Sbjct:    63 VMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYT 122

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VY  L+++A +   I+ +  ++D +++  S    + E                K++ LLR
Sbjct:   123 VYCSLIKVAASCGAIQYIPTELDQVRKWISDWKLTTE----------------KKHTLLR 166

Query:   189 MQTKSSL-CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTL 247
             +  ++ + C K++ A+KVM+ELL +YT +NASQAR DA  CI+ AL DPN FL   LLTL
Sbjct:   167 LLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTL 226

Query:   248 KPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQL 307
             KPVKFLEGELIHDLL IFV+ K+ +Y  FY+ +K++I + LGL H++N+ KMRLLTFM +
Sbjct:   227 KPVKFLEGELIHDLLTIFVSAKLASYVKFYQNNKDFI-DSLGLLHEQNMAKMRLLTFMGM 285

Query:   308 AETKTEMSFDMIQKELDLNPNQIEAFIID 336
             A    E+SFD +Q+EL +  + +EAF+ID
Sbjct:   286 AVENKEISFDTMQQELQIGADDVEAFVID 314

GO:0003674 "molecular_function" evidence=ND

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1N5F7 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Bos taurus (taxid:9913)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 147/329 (44%), Positives = 219/329 (66%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             P FID+  EDQA ELR YLK+ GAEIS+E S  G+  DL +II  CD C ++ ++ D+ES
Sbjct:     4 PAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKE-DDKDVES 62

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             V+NS+VS+L+++ P++ E LI +  EKL K  + +   + L++L  LF  ++  +P+RY 
Sbjct:    63 VMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYT 122

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VY  L+++A +   I+ +  ++D +++  S    + E                K++ LLR
Sbjct:   123 VYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTE----------------KKHTLLR 166

Query:   189 MQTKSSL-CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTL 247
             +  ++ + C K++ A+KVM+ELL +YT +NASQAR DA  CI+ AL DPN FL   LLTL
Sbjct:   167 LLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTL 226

Query:   248 KPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQL 307
             KPVKFLEGELIHDLL IFV+ K+ +Y  FY+ +K++I + LGL H++N+ KMRLLTFM +
Sbjct:   227 KPVKFLEGELIHDLLTIFVSAKLASYVKFYQNNKDFI-DSLGLLHEQNMAKMRLLTFMGM 285

Query:   308 AETKTEMSFDMIQKELDLNPNQIEAFIID 336
             A    E+SFD +Q+EL +  + +EAF+ID
Sbjct:   286 AVENKEISFDTMQQELHIGADDVEAFVID 314

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

UNIPROTKB|Q3T148 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Bos taurus (taxid:9913)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 147/329 (44%), Positives = 218/329 (66%)

Query:     9 PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIES 68
             P FID+  EDQA ELR YLK+ GAEIS+E S  G+  DL +II  CD C ++ ++ D+ES
Sbjct:     4 PAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKE-DDKDVES 62

Query:    69 VLNSIVSMLVLINPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYH 128
             V+NS+VS+L+++ P++ E LI +  EKL K  + +   + L++L  LF  ++  +P+RY 
Sbjct:    63 VMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYT 122

Query:   129 VYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKXXXXXXXXXXASKQYRLLR 188
             VY  L+++A +   I+ +  ++D +++  S    + E                K++ LLR
Sbjct:   123 VYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTE----------------KKHTLLR 166

Query:   189 MQTKSSL-CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTL 247
             +  ++ + C K++ A+KVM+ELL +YT +NASQAR DA  CI+ AL DPN FL   LLTL
Sbjct:   167 LLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTL 226

Query:   248 KPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQL 307
             KPVKFLEGELIHDLL IFV+ K+  Y  FY+ +K++I + LGL H++N+ KMRLLTFM +
Sbjct:   227 KPVKFLEGELIHDLLTIFVSAKL-AYVKFYQNNKDFI-DSLGLLHEQNMAKMRLLTFMGM 284

Query:   308 AETKTEMSFDMIQKELDLNPNQIEAFIID 336
             A    E+SFD +Q+EL +  + +EAF+ID
Sbjct:   285 AVENKEISFDTMQQELQIGADDVEAFVID 313

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7Q068	EIF3M_ANOGA	No assigned EC number	0.6107	0.6645	0.8181	yes	N/A
Q6DK91	EIF3M_XENTR	No assigned EC number	0.4589	0.6582	0.8342	yes	N/A
Q5ZJ64	EIF3M_CHICK	No assigned EC number	0.4589	0.6582	0.8342	yes	N/A
Q7JVI3	EIF3M_DROME	No assigned EC number	0.5792	0.6561	0.8036	yes	N/A
Q292F0	EIF3M_DROPS	No assigned EC number	0.5810	0.6540	0.8010	yes	N/A
Q3T148	EIF3M_BOVIN	No assigned EC number	0.4559	0.6561	0.8337	yes	N/A
Q99JX4	EIF3M_MOUSE	No assigned EC number	0.4528	0.6582	0.8342	yes	N/A
Q7L2H7	EIF3M_HUMAN	No assigned EC number	0.4559	0.6582	0.8342	yes	N/A
Q7T3B0	EIF3M_DANRE	No assigned EC number	0.4498	0.6582	0.832	yes	N/A
Q5R8C4	EIF3M_PONAB	No assigned EC number	0.4559	0.6582	0.8342	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	474
pfam01399	100	pfam01399, PCI, PCI domain	4e-07
pfam01399	100	pfam01399, PCI, PCI domain	1e-06
smart00753	88	smart00753, PAM, PCI/PINT associated module	3e-05
smart00088	88	smart00088, PINT, motif in proteasome subunits, In	3e-05
smart00753	88	smart00753, PAM, PCI/PINT associated module	4e-04
smart00088	88	smart00088, PINT, motif in proteasome subunits, In	4e-04

>gnl|CDD|216479 pfam01399, PCI, PCI domain

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 258 IHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENL-RKMRLLTFMQLAETKTEMSF 316
             DLL  F +  ++ +++    +++ +++    +  E+L RK+R L   +LA+  + +S 
Sbjct: 1   YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISL 60

Query: 317 DMIQKELDLNPNQIEAF----IIDGKIAAKV 343
             + K L L+ +++E      I DG+I  K+
Sbjct: 61  SDLAKLLGLSVDEVEKILSKLIRDGRIRGKI 91

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100

>gnl|CDD|216479 pfam01399, PCI, PCI domain

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 396 IHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENL-RKMRLLTFMQLAETKTEMSF 454
             DLL  F S  ++ +++    +++ +++    +  E+L RK+R L   +LA+  + +S 
Sbjct: 1   YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISL 60

Query: 455 DMIQKELDLNPNQIEAFIID 474
             + K L L+ +++E  +  
Sbjct: 61  SDLAKLLGLSVDEVEKILSK 80

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100

>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 296 LRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAF----IIDGKIAAKV 343
            RK+RL   +QL+E  + +S   + K L L+  ++E      I DG+I+AK+
Sbjct: 7   QRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKI 58

Length = 88

>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 296 LRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAF----IIDGKIAAKV 343
            RK+RL   +QL+E  + +S   + K L L+  ++E      I DG+I+AK+
Sbjct: 7   QRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKI 58

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function. Length = 88

>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 434 LRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID 474
            RK+RL   +QL+E  + +S   + K L L+  ++E  +  
Sbjct: 7   QRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSK 47

Length = 88

>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 434 LRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID 474
            RK+RL   +QL+E  + +S   + K L L+  ++E  +  
Sbjct: 7   QRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSK 47

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	474
KOG2753|consensus	378		100.0
KOG2908|consensus	380		100.0
KOG2753|consensus	378		99.96
KOG2908|consensus	380		99.83
KOG3250|consensus	258		99.49
KOG3250|consensus	258		99.33
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	98.89
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	98.53
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	97.86
smart00753	88	PAM PCI/PINT associated module.	97.86
KOG2581|consensus	493		97.83
smart00753	88	PAM PCI/PINT associated module.	96.83
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	96.83
KOG1464|consensus	440		94.55
COG5600	413	Transcription-associated recombination protein [DN	92.41
KOG0687|consensus	393		91.69
KOG2688|consensus	394		89.68
COG5187	412	RPN7 26S proteasome regulatory complex component,	87.8
KOG1497|consensus	399		86.91
KOG2582|consensus	422		85.14
KOG1464|consensus	440		84.52
KOG2758|consensus	432		81.26

>KOG2753|consensus

Probab=100.00  E-value=6.4e-71  Score=540.38  Aligned_cols=327  Identities=43%  Similarity=0.675  Sum_probs=317.4

Q ss_pred             CCCCceeecCChHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHhhhhhhcCCChhhHHHHHHHHHHHHhccChHH
Q psy11709          5 VQPPPVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGIEDDLHKIIGVCDACFQDANEADIESVLNSIVSMLVLINPER   84 (474)
Q Consensus         5 ~~~~~~~vd~~~~d~~~El~~yl~~~~~~~~~~~~~~~~~~~l~ki~~~~~~~~~~~~eke~e~~~nlli~ll~~~~~~~   84 (474)
                      |++.|+|+|.++++|++|+|+|++.++++++.+.++++.++++..++++|+.|++ .|||++|+++|++++++...++|+
T Consensus         3 ~~e~P~f~dis~~~Ql~elr~yl~~~eaeis~e~~~kgl~~~l~~ii~~c~v~~k-~~ekdle~vlnsi~sLi~~~~~e~   81 (378)
T KOG2753|consen    3 SEEVPVFADISFEEQLAELRAYLKKLEAEISEEASEKGLEEDLLMIIEACDVLAK-IPEKDLECVLNSIVSLIKNAPPEK   81 (378)
T ss_pred             CccCceEEEecHHHHHHHHHHHHhhcCcccchhhhccCHHHHHHHHHHHhHHhhc-CCcchHHHHHHHHHHHHHhCCHHH
Confidence            4578999999999999999999999999999887778899999999999999986 889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCChhhHHHHHHHHHhccCCCCcchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCH
Q psy11709         85 AENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSN  164 (474)
Q Consensus        85 ~~~~v~~l~~~l~~~~~~~~~~~~l~~L~~lfn~l~~~s~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~  164 (474)
                      ..+.+..+|+++++++.+..|.+||++|++|||.++...|.||+||++++++|.+++.++.+.+.++.+++|+++|+++.
T Consensus        82 ~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~v  161 (378)
T KOG2753|consen   82 VEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISV  161 (378)
T ss_pred             hHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCH
Confidence            99999999999999987777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHcCCCcccchhh
Q psy11709        165 EQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPL  244 (474)
Q Consensus       165 ~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f~~L  244 (474)
                      +++|.+|++++++++.               .+..+++.++|..||+||+.+|+++|+++|.+|++.|+.+|++|.||+|
T Consensus       162 edqrel~r~v~~al~~---------------~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~~F~fD~L  226 (378)
T KOG2753|consen  162 EDQRELLRAVHKALKD---------------NKSVDESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPKIFLFDHL  226 (378)
T ss_pred             HHHHHHHHHHHHHHHh---------------cchhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCceeccchh
Confidence            9999999999999999               7778999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhhcccccHHHHHHHHhhCChhHHHHHHhhchHhHHhhcCCCHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhC
Q psy11709        245 LTLKPVKFLEGELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELD  324 (474)
Q Consensus       245 l~~p~v~~L~~~~l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~  324 (474)
                      +.+|+|++|+++.+||||.||.+|.+++|..|++.|++|+ +++|++||++.+||||||||+||..+++|||++|+++|+
T Consensus       227 l~L~pV~qLE~d~i~qLL~IF~s~~L~aYveF~~~N~~Fv-qs~gl~~E~~~~KMRLLTlm~LA~es~eisy~~l~k~Lq  305 (378)
T KOG2753|consen  227 LTLPPVKQLEGDLIHQLLKIFVSGKLDAYVEFVAANSGFV-QSQGLVHEQNMAKMRLLTLMSLAEESNEISYDTLAKELQ  305 (378)
T ss_pred             ccCchHHHhccchHHHHHHHHHhcchHHHHHHHHhChHHH-HHhcccHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhc
Confidence            9999999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHhhhhHHHHHHHHH
Q psy11709        325 LNPNQIEAFIIDGKIAAKVMIELL  348 (474)
Q Consensus       325 i~~~eVE~~VI~aI~aglv~~klL  348 (474)
                      |.+||||.|||+||++|+|+||+-
T Consensus       306 I~edeVE~fVIdaI~aklV~~kid  329 (378)
T KOG2753|consen  306 INEDEVELFVIDAIRAKLVEGKID  329 (378)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999999999983

>KOG2908|consensus

Probab=100.00  E-value=1.5e-32  Score=271.61  Aligned_cols=279  Identities=18%  Similarity=0.215  Sum_probs=221.8

Q ss_pred             chHHHHHHHHhhh-hhhcCCChhhHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHhccC
Q psy11709         43 IEDDLHKIIGVCD-ACFQDANEADIESVLNSIVSMLVL-INPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLE  120 (474)
Q Consensus        43 ~~~~l~ki~~~~~-~~~~~~~eke~e~~~nlli~ll~~-~~~~~~~~~v~~l~~~l~~~~~~~~~~~~l~~L~~lfn~l~  120 (474)
                      |-..--+++.-.+ .+|..+|  ..-..|.-+++-+-. .+|   ... ..+|-.++++.+  .+..++++|..+-|.+.
T Consensus        35 W~QLt~~l~~fvd~~~f~~~~--~~l~lY~NFvsefe~kINp---lsl-vei~l~~~~~~~--D~~~al~~Le~i~~~~~  106 (380)
T KOG2908|consen   35 WHQLTLALVDFVDDPPFQAGD--LLLQLYLNFVSEFETKINP---LSL-VEILLVVSEQIS--DKDEALEFLEKIIEKLK  106 (380)
T ss_pred             HHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHhhccCh---HHH-HHHHHHHHHHhc--cHHHHHHHHHHHHHHHH
Confidence            3344444444333 5665443  335555555554443 463   344 344555555443  57789999999999998


Q ss_pred             CCCcchHHHHHHHHHHHH---hcCchhHHHhhHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccc
Q psy11709        121 PTSPMRYHVYYHLVQIAQ---NADQIKSVFKDVDHLKQQFSQCP-PSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLC  196 (474)
Q Consensus       121 ~~s~~r~~v~~~il~~a~---~~~~~~~l~~~l~~l~~~l~~w~-~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~  196 (474)
                      ..+.....+|+ ..+.++   ..|++..+++.|+++++.+++.+ +++.+|.+||.+.++||+.               .
T Consensus       107 ~~~e~~av~~~-~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~---------------~  170 (380)
T KOG2908|consen  107 EYKEPDAVIYI-LTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKK---------------I  170 (380)
T ss_pred             hhccchhHHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHH---------------H
Confidence            77553344443 444443   45789999999999999999988 5666999999999999999               8


Q ss_pred             cchHHHHHHHHHHhcccCCCCh--hhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhcccc---cHHHHHHHHhhCChh
Q psy11709        197 SKTELAAKVMIELLSTYTAENA--SQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIHDLLNIFVAEKVN  271 (474)
Q Consensus       197 ~~~~~ay~~~l~~L~t~~~~~~--~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~---~l~~LL~iF~~g~l~  271 (474)
                      ++.+.+|+++|+||+|.+.++.  ++.++.|..++.+||.+.++||||||++||+...|.||   |++++|.+|++||+.
T Consensus       171 ~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~  250 (380)
T KOG2908|consen  171 GDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLK  250 (380)
T ss_pred             HhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHH
Confidence            9999999999999999877665  57779999999999999999999999999999999996   999999999999999


Q ss_pred             HHHHHHhhchHhHHhhcCCCHHHHHHHHHHHHHHHhhhc----CCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709        272 TYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAET----KTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       272 ~y~~f~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~----~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl  347 (474)
                      .|++.+..+.++  ..++-++..+.+||||||||+++|.    .|.+||++||++++||.+|||.+||+|++.|++.|.+
T Consensus       251 ~f~~l~~~~~~~--p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE~LVMKAlslgLikG~I  328 (380)
T KOG2908|consen  251 RFESLKGVWGKQ--PDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVELLVMKALSLGLIKGSI  328 (380)
T ss_pred             HHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHHHHHHHHHhccceeeee
Confidence            999998776331  1222357899999999999999997    7999999999999999999999999999999999765

>KOG2753|consensus

Probab=99.96  E-value=5.9e-29  Score=244.98  Aligned_cols=173  Identities=43%  Similarity=0.728  Sum_probs=154.7

Q ss_pred             HHHHHHhhhcCCCcC-----hHHHH---HhhCCChh---hHHHHHHhhhh-------HHHHHHHHHhhccccchhhHHHH
Q psy11709        301 LLTFMQLAETKTEMS-----FDMIQ---KELDLNPN---QIEAFIIDGKI-------AAKVMIELLSTYTAENASQARED  362 (474)
Q Consensus       301 LLtL~~La~~~~~ls-----y~~Ia---~~l~i~~~---eVE~~VI~aI~-------aglv~~klL~t~~~~~~~ea~~~  362 (474)
                      .++++++|.+.+.+.     ++.|.   +.++++.+   ++=.+|=+|++       +..++.+||.||+.+|+++|++.
T Consensus       127 y~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~Ared  206 (378)
T KOG2753|consen  127 YMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEARED  206 (378)
T ss_pred             HHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHH
Confidence            467777787744443     34444   67888864   45556667774       44699999999999999999999


Q ss_pred             HHHHHHHHhcCCCeeecccccCCccccccccccHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHHHHHHH
Q psy11709        363 AQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTF  442 (474)
Q Consensus       363 a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~~~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~KirlLtL  442 (474)
                      |.+||+.|+.+|+.|.||+|+.+|+|+.|+++.+|+||.||.+|.+++|..|.+.|++++ .++|++++++.+|||||||
T Consensus       207 A~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~i~qLL~IF~s~~L~aYveF~~~N~~Fv-qs~gl~~E~~~~KMRLLTl  285 (378)
T KOG2753|consen  207 AMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDLIHQLLKIFVSGKLDAYVEFVAANSGFV-QSQGLVHEQNMAKMRLLTL  285 (378)
T ss_pred             HHHHHHHHHcCCceeccchhccCchHHHhccchHHHHHHHHHhcchHHHHHHHHhChHHH-HHhcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999997 9999999999999999999


Q ss_pred             HHhHhcCCCCCHHHHHhhcCCChhhhhhhccC
Q psy11709        443 MQLAETKTEMSFDMIQKELDLNPNQIEAFIID  474 (474)
Q Consensus       443 ~~La~~~r~lsy~~Ia~~l~i~~~eVE~lVId  474 (474)
                      |+||..+++|||++|++.|+|.+||||.||||
T Consensus       286 m~LA~es~eisy~~l~k~LqI~edeVE~fVId  317 (378)
T KOG2753|consen  286 MSLAEESNEISYDTLAKELQINEDEVELFVID  317 (378)
T ss_pred             HHHhccCCCCCHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999999999999999999999997

>KOG2908|consensus

Probab=99.83  E-value=4.1e-21  Score=190.71  Aligned_cols=127  Identities=22%  Similarity=0.332  Sum_probs=112.0

Q ss_pred             HHHHhhccccchh--hHHHHHHHHHHHHhcCCCeeecccccCCcccccccc---ccHHHHHHHHhhCChhhHHHHHHhch
Q psy11709        345 IELLSTYTAENAS--QAREDAQACILAALADPNTFLLHPLLTLKPVKFLEG---ELIHDLLNIFVSEKVNTYQDFYKQHK  419 (474)
Q Consensus       345 ~klL~t~~~~~~~--ea~~~a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~---~~l~~LL~iF~~G~~~~y~~~~~~~~  419 (474)
                      .++|+.-+.++-+  +.++.|..++.+|+.|+++||||||+.||+..+|.|   .|++++|.+|+.||+..|+..+..+.
T Consensus       181 L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~  260 (380)
T KOG2908|consen  181 LLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWG  260 (380)
T ss_pred             HHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence            3455544444443  777999999999999999999999999999999999   49999999999999999999998886


Q ss_pred             HhHhhhcCCCHHHHHHHHHHHHHHHhHhc----CCCCCHHHHHhhcCCChhhhhhhcc
Q psy11709        420 EYIVNKLGLDHQENLRKMRLLTFMQLAET----KTEMSFDMIQKELDLNPNQIEAFII  473 (474)
Q Consensus       420 ~~~~~~~~l~~~~~~~KirlLtL~~La~~----~r~lsy~~Ia~~l~i~~~eVE~lVI  473 (474)
                      ++  +.++-++..+.+|||+|||+++||.    .|.+||++||++++||.+|||.+||
T Consensus       261 ~~--p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE~LVM  316 (380)
T KOG2908|consen  261 KQ--PDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVELLVM  316 (380)
T ss_pred             cC--chHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHHHHHH
Confidence            64  4555568899999999999999996    7999999999999999999999986

>KOG3250|consensus

Probab=99.49  E-value=1.5e-14  Score=135.63  Aligned_cols=104  Identities=23%  Similarity=0.311  Sum_probs=94.5

Q ss_pred             HHHHHHHHhcCCCeeecccccCCcccccccc---ccHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHHHH
Q psy11709        363 AQACILAALADPNTFLLHPLLTLKPVKFLEG---ELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRL  439 (474)
Q Consensus       363 a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~---~~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~Kirl  439 (474)
                      -..+|.+|+.+|++|.|||||.+|+|.+|.+   +.+++||++|++|||.||....-..|.+        ...++.|++-
T Consensus        26 l~~lIsqale~P~vf~F~ELl~l~nv~qlae~~dsa~lrlL~lFa~Gt~~Dy~aea~rlp~L--------s~~q~~kLk~   97 (258)
T KOG3250|consen   26 LEELISQALEAPGVFVFGELLILPNVVQLAEPIDSAYLRLLELFAYGTYRDYSAEALRLPKL--------SLAQLNKLKH   97 (258)
T ss_pred             HHHHHHHHhcCCCeeeHHHHHhhhhHHHHcccccHHHHHHHHHHhcCchhhhhhhhhcCCCC--------CHHHHHhhhc
Confidence            5789999999999999999999999999987   4999999999999999999876555554        4678899999


Q ss_pred             HHHHHhHhcCCCCCHHHHHhhcCCCh-hhhhhhccC
Q psy11709        440 LTFMQLAETKTEMSFDMIQKELDLNP-NQIEAFIID  474 (474)
Q Consensus       440 LtL~~La~~~r~lsy~~Ia~~l~i~~-~eVE~lVId  474 (474)
                      ++.+++|+..+.|+|..+.+.+.+.. .|||++||+
T Consensus        98 ltV~slas~~k~lpy~~Ll~~l~~~nvrelEd~iie  133 (258)
T KOG3250|consen   98 LTVVSLASFEKCLPYLVLLRLLPSRNVRELEDLIIE  133 (258)
T ss_pred             ceehhhhhhchhhhHHHHHhhccCCchhHHHHHHHH
Confidence            99999999999999999999999976 699999984

>KOG3250|consensus

Probab=99.33  E-value=3.1e-12  Score=120.19  Aligned_cols=116  Identities=23%  Similarity=0.273  Sum_probs=101.5

Q ss_pred             HHHHHHHHHcCCCcccchhhcCCchhhhcccc---cHHHHHHHHhhCChhHHHHHHhhchHhHHhhcCCCHHHHHHHHHH
Q psy11709        225 AQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRL  301 (474)
Q Consensus       225 A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~---~l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l~~~~l~~KirL  301 (474)
                      -..+|..|+.+|++|-|+||+.+|.|..|.++   .+++||.+|.+|++.+|..-...-|.       |+ .....|++-
T Consensus        26 l~~lIsqale~P~vf~F~ELl~l~nv~qlae~~dsa~lrlL~lFa~Gt~~Dy~aea~rlp~-------Ls-~~q~~kLk~   97 (258)
T KOG3250|consen   26 LEELISQALEAPGVFVFGELLILPNVVQLAEPIDSAYLRLLELFAYGTYRDYSAEALRLPK-------LS-LAQLNKLKH   97 (258)
T ss_pred             HHHHHHHHhcCCCeeeHHHHHhhhhHHHHcccccHHHHHHHHHHhcCchhhhhhhhhcCCC-------CC-HHHHHhhhc
Confidence            45689999999999999999999999999875   69999999999999999864333232       22 456789999


Q ss_pred             HHHHHhhhcCCCcChHHHHHhhCCC-hhhHHHHHHhhhhHHHHHHHHH
Q psy11709        302 LTFMQLAETKTEMSFDMIQKELDLN-PNQIEAFIIDGKIAAKVMIELL  348 (474)
Q Consensus       302 LtL~~La~~~~~lsy~~Ia~~l~i~-~~eVE~~VI~aI~aglv~~klL  348 (474)
                      ++..++|+..+.|||..+.+.+... ..|+|.+||+|++++++.||+-
T Consensus        98 ltV~slas~~k~lpy~~Ll~~l~~~nvrelEd~iieamya~IlrGkld  145 (258)
T KOG3250|consen   98 LTVVSLASFEKCLPYLVLLRLLPSRNVRELEDLIIEAMYADILRGKLD  145 (258)
T ss_pred             ceehhhhhhchhhhHHHHHhhccCCchhHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999996 5899999999999999999983

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=98.89  E-value=1.2e-09  Score=92.21  Aligned_cols=90  Identities=20%  Similarity=0.346  Sum_probs=79.4

Q ss_pred             cHHHHHHHHhhCChhHHHHHHhhc-hHhHHhhcCCCH--HHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHH
Q psy11709        257 LIHDLLNIFVAEKVNTYQDFYKQH-KEYIVNKLGLDH--QENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAF  333 (474)
Q Consensus       257 ~l~~LL~iF~~g~l~~y~~f~~~~-~~~~~~~~~l~~--~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~  333 (474)
                      |+.+|+++|.+|++..|..+...+ +.++ .+.++..  +.+.+|+|..+|.+++..-+.+++++|++.++++.++||.|
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~~vE~~   80 (105)
T PF01399_consen    2 PYSELLRAFRSGDLQEFEEFLEKHSESLF-KDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEEEVESI   80 (105)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHTCHHHH-HCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchHHHHHH
Confidence            688999999999999999999998 7776 5556544  78999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHH
Q psy11709        334 IIDGKIAAKVMIEL  347 (474)
Q Consensus       334 VI~aI~aglv~~kl  347 (474)
                      |+++|..|.+.|++
T Consensus        81 l~~~I~~~~i~~~I   94 (105)
T PF01399_consen   81 LIDLISNGLIKAKI   94 (105)
T ss_dssp             HHHHHHTTSSEEEE
T ss_pred             HHHHHHCCCEEEEE
Confidence            99999999877543

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=98.53  E-value=1.3e-07  Score=79.77  Aligned_cols=80  Identities=24%  Similarity=0.403  Sum_probs=68.9

Q ss_pred             ccHHHHHHHHhhCChhhHHHHHHhc-hHhHhhhcCCC--HHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhh
Q psy11709        394 ELIHDLLNIFVSEKVNTYQDFYKQH-KEYIVNKLGLD--HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEA  470 (474)
Q Consensus       394 ~~l~~LL~iF~~G~~~~y~~~~~~~-~~~~~~~~~l~--~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~  470 (474)
                      +|+++|+++|..|++.+|..+.+.+ +.+. .+.++.  .+.+.+|+|..+|..++...+.+++++|++.++++.++||.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~~vE~   79 (105)
T PF01399_consen    1 PPYSELLRAFRSGDLQEFEEFLEKHSESLF-KDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEEEVES   79 (105)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHTCHHHH-HCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHH
T ss_pred             CHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchHHHHH
Confidence            4889999999999999999999999 5553 443433  48999999999999999999999999999999999999999


Q ss_pred             hccC
Q psy11709        471 FIID  474 (474)
Q Consensus       471 lVId  474 (474)
                      ||++
T Consensus        80 ~l~~   83 (105)
T PF01399_consen   80 ILID   83 (105)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=97.86  E-value=7.1e-06  Score=67.62  Aligned_cols=56  Identities=21%  Similarity=0.342  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709        292 HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       292 ~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl  347 (474)
                      .+.+.+|+|..++.+++...+.++|++|++.++++.++||.||+++|..|.+.|++
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~I   58 (88)
T smart00088        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKI   58 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEE
Confidence            35789999999999999999999999999999999999999999999999887665

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>smart00753 PAM PCI/PINT associated module

Probab=97.86  E-value=7.1e-06  Score=67.62  Aligned_cols=56  Identities=21%  Similarity=0.342  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709        292 HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       292 ~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl  347 (474)
                      .+.+.+|+|..++.+++...+.++|++|++.++++.++||.||+++|..|.+.|++
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~I   58 (88)
T smart00753        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKI   58 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEE
Confidence            35789999999999999999999999999999999999999999999999887665

>KOG2581|consensus

Probab=97.83  E-value=0.0011  Score=68.73  Aligned_cols=139  Identities=13%  Similarity=0.146  Sum_probs=90.6

Q ss_pred             ccchHHHHHHHHHHhcccCCCChhhHHHHHHHH--HHHHHcCCCc--ccchhhcCCchhhhcccc--cHHHHHHHHhhCC
Q psy11709        196 CSKTELAAKVMIELLSTYTAENASQAREDAQAC--ILAALADPNT--FLLHPLLTLKPVKFLEGE--LIHDLLNIFVAEK  269 (474)
Q Consensus       196 ~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~--i~~aL~~p~~--f~f~~Ll~~p~v~~L~~~--~l~~LL~iF~~g~  269 (474)
                      ..++..|-++++..++.-+..-+--.++...+|  ++.-|.+|.-  -.|    ..|.   ++.+  ++|+|=++.-.||
T Consensus       260 qldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F----~Qp~---~~ksL~~Yf~Lt~AVr~gd  332 (493)
T KOG2581|consen  260 QLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVF----RQPG---MRKSLRPYFKLTQAVRLGD  332 (493)
T ss_pred             hcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhh----cCcc---HHHHHHHHHHHHHHHHHhh
Confidence            457788888888877755542221222333333  3333444321  112    1222   3334  7999999999999


Q ss_pred             hhHHHHHHhhchHhHHhhcCC-------CHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChh-hHHHHHHhhhhHH
Q psy11709        270 VNTYQDFYKQHKEYIVNKLGL-------DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPN-QIEAFIIDGKIAA  341 (474)
Q Consensus       270 l~~y~~f~~~~~~~~~~~~~l-------~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~-eVE~~VI~aI~ag  341 (474)
                      ++.|..-..+++..+ ..-|.       .+..+..=||.++|.     =.-||+.+||+.|+++.+ ++|.+|=+||+-|
T Consensus       333 lkkF~~~leq~k~~f-~~D~ty~LivRLR~NVIkTgIR~ISls-----YSRISl~DIA~kL~l~Seed~EyiVakAIRDG  406 (493)
T KOG2581|consen  333 LKKFNETLEQFKDKF-QADGTYTLIVRLRHNVIKTGIRKISLS-----YSRISLQDIAKKLGLNSEEDAEYIVAKAIRDG  406 (493)
T ss_pred             HHHHHHHHHHHHHHH-hhCCcchHHHHHHHHHHHHhhhheeee-----eeeccHHHHHHHhcCCCchhHHHHHHHHHHhc
Confidence            999999888876555 33232       344445555544432     467899999999999875 5999999999999


Q ss_pred             HHHHHH
Q psy11709        342 KVMIEL  347 (474)
Q Consensus       342 lv~~kl  347 (474)
                      ++++++
T Consensus       407 vIea~I  412 (493)
T KOG2581|consen  407 VIEAKI  412 (493)
T ss_pred             cceeee
Confidence            999765

>smart00753 PAM PCI/PINT associated module

Probab=96.83  E-value=0.0011  Score=54.40  Aligned_cols=45  Identities=27%  Similarity=0.409  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhhccC
Q psy11709        430 HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID  474 (474)
Q Consensus       430 ~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~lVId  474 (474)
                      .+.+.+|+|..++..++...+.++|++|++.++++.++||.||++
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~   47 (88)
T smart00753        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSK   47 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999874

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=96.83  E-value=0.0011  Score=54.40  Aligned_cols=45  Identities=27%  Similarity=0.409  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhhccC
Q psy11709        430 HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID  474 (474)
Q Consensus       430 ~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~lVId  474 (474)
                      .+.+.+|+|..++..++...+.++|++|++.++++.++||.||++
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~   47 (88)
T smart00088        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSK   47 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999874

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>KOG1464|consensus

Probab=94.55  E-value=0.5  Score=47.35  Aligned_cols=141  Identities=15%  Similarity=0.293  Sum_probs=92.1

Q ss_pred             ccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHH--HcCCCcccchhhcCCchhhhccccc----HHHHHHHHhhCC
Q psy11709        196 CSKTELAAKVMIELLSTYTAENASQAREDAQACILAA--LADPNTFLLHPLLTLKPVKFLEGEL----IHDLLNIFVAEK  269 (474)
Q Consensus       196 ~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~a--L~~p~~f~f~~Ll~~p~v~~L~~~~----l~~LL~iF~~g~  269 (474)
                      .|+.++|..-.......|+.+.. ..+-.+.+-.+.|  |--.++--||.=    -.+-.+++|    .-+|+.++-..+
T Consensus       244 eg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYLVLANMLmkS~iNPFDsQ----EAKPyKNdPEIlAMTnlv~aYQ~Nd  318 (440)
T KOG1464|consen  244 EGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYLVLANMLMKSGINPFDSQ----EAKPYKNDPEILAMTNLVAAYQNND  318 (440)
T ss_pred             cchHHHHHhHHHHHHhcccccCC-cchhHHHHHHHHHHHHHHcCCCCCccc----ccCCCCCCHHHHHHHHHHHHHhccc
Confidence            35667776666666666765432 2333333333322  222223233311    112233432    578999999999


Q ss_pred             hhHHHHHHhhch------HhHHhhcCCCHHHHHHHHHHHHHHHhhhc--CCCcChHHHHHhhCCChhhHHHHHHhhhhHH
Q psy11709        270 VNTYQDFYKQHK------EYIVNKLGLDHQENLRKMRLLTFMQLAET--KTEMSFDMIQKELDLNPNQIEAFIIDGKIAA  341 (474)
Q Consensus       270 l~~y~~f~~~~~------~~~~~~~~l~~~~l~~KirLLtL~~La~~--~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~ag  341 (474)
                      +.+|+...++|.      .|+.+    ..+.+.+++|--.|..|..-  +--|||  |+++|+|++.|||.+++.+|--.
T Consensus       319 I~eFE~Il~~~~~~IM~DpFIRe----h~EdLl~niRTQVLlkLIkPYt~i~Ipf--is~~Lnv~~~dV~~LLV~~ILD~  392 (440)
T KOG1464|consen  319 IIEFERILKSNRSNIMDDPFIRE----HIEDLLRNIRTQVLLKLIKPYTNIGIPF--ISKELNVPEADVESLLVSCILDD  392 (440)
T ss_pred             HHHHHHHHHhhhccccccHHHHH----HHHHHHHHHHHHHHHHHhccccccCchh--hHhhcCCCHHHHHHHHHHHHhcc
Confidence            999999988763      35523    24789999999999999987  445555  99999999999999999999655


Q ss_pred             HHHHHH
Q psy11709        342 KVMIEL  347 (474)
Q Consensus       342 lv~~kl  347 (474)
                      -+.|++
T Consensus       393 ~i~g~I  398 (440)
T KOG1464|consen  393 TIDGRI  398 (440)
T ss_pred             ccccch
Confidence            455543

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]

Probab=92.41  E-value=16  Score=38.32  Aligned_cols=213  Identities=17%  Similarity=0.102  Sum_probs=117.6

Q ss_pred             hhhHHHHHHHHHhccCCC-C----cchHHH-H---HHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHH-----HH
Q psy11709        105 GPVTLRVLWLLFQSLEPT-S----PMRYHV-Y---YHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQ-----KL  170 (474)
Q Consensus       105 ~~~~l~~L~~lfn~l~~~-s----~~r~~v-~---~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~-----~l  170 (474)
                      -+.+=|.++..||..-++ +    |.+... |   ..+.++.-+-+.++.+...++..+. ..--+++...++     ++
T Consensus       146 l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~-vs~~Di~~~~~sq~v~f~Y  224 (413)
T COG5600         146 LSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKE-VSMPDISEYQKSQVVVFHY  224 (413)
T ss_pred             HHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhccc-ccccccchhhhcceeehhh
Confidence            345668888889886543 2    233222 2   2334555566777777666664433 222223322222     23


Q ss_pred             HHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHH-HhcccCCCChhhHHHHHHHHHHHHHcCCCcccchhhcCCch
Q psy11709        171 LRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIE-LLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKP  249 (474)
Q Consensus       171 y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~-~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~  249 (474)
                      |+-+.-.+.+                 +..+||-.+.. ++.|-.... -.....+.=.+..+|.-...         |+
T Consensus       225 YLG~~~l~~e-----------------n~heA~~~L~~aFl~c~~l~~-~n~~rIl~~~ipt~Llv~~~---------~P  277 (413)
T COG5600         225 YLGIYYLLNE-----------------NFHEAFLHLNEAFLQCPWLIT-RNRKRILPYYIPTSLLVNKF---------PP  277 (413)
T ss_pred             HHHHHHHHHH-----------------hHHHHHHHHHHHHHhChhhhh-cchheehhHHhhHHHHhCCC---------CC
Confidence            4444433332                 33445544444 554433111 01122333344444443322         23


Q ss_pred             hh-hccc----ccHHHHHHHHhhCChhHHHHHHhhchHhHHhhcCCCHHHHHHHHHHHHHHHhhhc-------CCCcChH
Q psy11709        250 VK-FLEG----ELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAET-------KTEMSFD  317 (474)
Q Consensus       250 v~-~L~~----~~l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~-------~~~lsy~  317 (474)
                      ++ .|+.    +.+--|..+..+|++++|.....+|..++ -+.|+ +-.+..+.++++.-.|.-.       +..+|++
T Consensus       278 tk~~L~r~~~~s~~~~LvkavrsGni~~~~~~l~~ner~~-~~~~l-~ltl~~~~~~V~~RNL~rk~w~~~~~qsrlp~s  355 (413)
T COG5600         278 TKDLLERFKRCSVYSPLVKAVRSGNIEDFDLALSRNERKF-AKRGL-YLTLLAHYPLVCFRNLFRKIWRLHGKQSRLPLS  355 (413)
T ss_pred             chHHHHhccccchhHHHHHHHHcCCHHHHHHHHHHhHHHH-HHcch-HHHHHhhccHHHHHHHHHHHHhhccccccCcHH
Confidence            33 2333    24677889999999999999999998888 56666 3345566666666555543       3344555


Q ss_pred             H--HHHhhCCCh-----hhHHHHHHhhhhHHHHHHHH
Q psy11709        318 M--IQKELDLNP-----NQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       318 ~--Ia~~l~i~~-----~eVE~~VI~aI~aglv~~kl  347 (474)
                      -  |+.++...+     ++||-.+..+|..|.+.|-+
T Consensus       356 il~~~~qls~~dn~~~~~~VEciL~tlI~~G~lrgYi  392 (413)
T COG5600         356 ILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGYI  392 (413)
T ss_pred             HHHHHHHccCCCcccChHHHHHHHHHHHhhhhhhhee
Confidence            4  455444433     58999999999999877654

>KOG0687|consensus

Probab=91.69  E-value=18  Score=37.37  Aligned_cols=211  Identities=14%  Similarity=0.113  Sum_probs=135.1

Q ss_pred             HHHHHHHHhccCCCCcchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy11709        109 LRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCP-PSNEQMQKLLRLLHQALLASKQYRLL  187 (474)
Q Consensus       109 l~~L~~lfn~l~~~s~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~-~~~~~~~~ly~~i~~~~~~~~~~~~~  187 (474)
                      +..+...|..--.. ..|..|+..+++++--.++.+.+...++..+..+.+=+ -+-.-+-+.|.-++-...        
T Consensus       124 ~~~~~~t~~ktvs~-g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msv--------  194 (393)
T KOG0687|consen  124 LEALRKTYEKTVSL-GHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSV--------  194 (393)
T ss_pred             HHHHHHHHHHHhhc-ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHH--------
Confidence            34444444332222 57888888999999999999999999999999887411 122334444666654433        


Q ss_pred             hhhhccccccchHHHHHHHHHHhcccCCCCh---hhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhccc--ccHHHHH
Q psy11709        188 RMQTKSSLCSKTELAAKVMIELLSTYTAENA---SQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEG--ELIHDLL  262 (474)
Q Consensus       188 ~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~---~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~--~~l~~LL  262 (474)
                               .++.+|....+.-++||+.-+.   +.....++=+..-+|--|++  =.-.+..|-|...-.  +++.+++
T Consensus       195 ---------R~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dl--ktKVi~~~Evl~vl~~l~~~~q~l  263 (393)
T KOG0687|consen  195 ---------RNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDL--KTKVIKCPEVLEVLHKLPSVSQLL  263 (393)
T ss_pred             ---------HhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchH--HhhhcCcHHHHHHhhcCchHHHHH
Confidence                     3688899999999999998655   34555555555555544432  122555555554333  2566777


Q ss_pred             HHHhhCChhHHHHHH----hhc--hHhHHhhcCCCHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHh
Q psy11709        263 NIFVAEKVNTYQDFY----KQH--KEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIID  336 (474)
Q Consensus       263 ~iF~~g~l~~y~~f~----~~~--~~~~~~~~~l~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~  336 (474)
                      .-+-.-+.++|-.-.    .++  ++.+   ++=......|-||+.+-.++-.+=|.++.+-.|++.+++++=++.=+=+
T Consensus       264 ~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~---l~~h~~yyvREMR~rvY~QlLESYrsl~l~~MA~aFgVSVefiDreL~r  340 (393)
T KOG0687|consen  264 NSLYECDYSDFFNDLAAVEAKQLKDDRY---LGPHYRYYVREMRRRVYAQLLESYRSLTLESMAKAFGVSVEFIDRELGR  340 (393)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhhccchh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence            766666666554221    111  1111   0101356789999999999999999999999999999998755544444


Q ss_pred             hhhHHH
Q psy11709        337 GKIAAK  342 (474)
Q Consensus       337 aI~agl  342 (474)
                      =|-+|.
T Consensus       341 FI~~gr  346 (393)
T KOG0687|consen  341 FIAAGR  346 (393)
T ss_pred             hhccCc
Confidence            444543

>KOG2688|consensus

Probab=89.68  E-value=2.5  Score=44.54  Aligned_cols=212  Identities=13%  Similarity=0.105  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHhccCCC-------CcchHHHH--HHHHHHHHhcCchhHHHhhHHHH---HHhhhcCCCCHHHHHHHHHHH
Q psy11709        107 VTLRVLWLLFQSLEPT-------SPMRYHVY--YHLVQIAQNADQIKSVFKDVDHL---KQQFSQCPPSNEQMQKLLRLL  174 (474)
Q Consensus       107 ~~l~~L~~lfn~l~~~-------s~~r~~v~--~~il~~a~~~~~~~~l~~~l~~l---~~~l~~w~~~~~~~~~ly~~i  174 (474)
                      .+-+.+...|+..-++       +.-....|  ..+.++..+-+....+++-+..+   ..|...|..+.-..-.+|.-.
T Consensus       134 ~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylGr  213 (394)
T KOG2688|consen  134 AASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLGR  213 (394)
T ss_pred             HHHHHHHHHHHHHhCccccccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeeeee
Confidence            4455666777765433       12222333  24445666666666666555533   356677777765555555553


Q ss_pred             HHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhcc
Q psy11709        175 HQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLE  254 (474)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~  254 (474)
                      ...+..                 +..+|+..+..........-....+-...=++...+      ..+.   +|-..-|.
T Consensus       214 ~a~~~~-----------------d~~~A~~~L~~af~~cp~~~~~n~~~iliylip~~~------llg~---~Pt~~lL~  267 (394)
T KOG2688|consen  214 YAMFES-----------------DFLNAFLQLNEAFRLCPDLLLKNKRLILIYLIPTGL------LLGR---IPTKELLD  267 (394)
T ss_pred             ehhhhh-----------------hHHHHHHHHHHHHHhCcHHHHhhhhhHHHHHhHHHH------Hhcc---CcchhhHh
Confidence            333332                 445555555544332222212222222222222111      1111   35555554


Q ss_pred             c---ccHHHHHHHHhhCChhHHHHHHhhchHhHHhhcCCCHHHHHHHHHHHHHHHhhhc-------CCCcChHHHHHhhC
Q psy11709        255 G---ELIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAET-------KTEMSFDMIQKELD  324 (474)
Q Consensus       255 ~---~~l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~-------~~~lsy~~Ia~~l~  324 (474)
                      .   +.+-.|.++.-+|++..|....+.|..++ -..|+-  -...|.++++.-.|..+       +..+|++.+-.+++
T Consensus       268 ~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f-~~~gi~--l~l~~l~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~  344 (394)
T KOG2688|consen  268 FYTLDKYSPLVQAVRSGNLRLFDLALADNERFF-IRSGIY--LTLEKLPLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQ  344 (394)
T ss_pred             HhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHH-HHhccH--HHhhhhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHh
Confidence            3   25778999999999999999999998888 666652  24455888988888776       57999999999998


Q ss_pred             CCh------hhHHHHHHhhhhHHHHHHHH
Q psy11709        325 LNP------NQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       325 i~~------~eVE~~VI~aI~aglv~~kl  347 (474)
                      ...      +|||-.+...|..|.+.|-+
T Consensus       345 ~~~~~~~~~deveciLa~lI~~G~ikgYi  373 (394)
T KOG2688|consen  345 FSGVTDVDLDEVECILANLIDLGRIKGYI  373 (394)
T ss_pred             hcCCCCCchhhHHHHHHhhhhhccccchh
Confidence            753      78999999999998776543

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=87.80  E-value=19  Score=36.69  Aligned_cols=184  Identities=15%  Similarity=0.200  Sum_probs=113.2

Q ss_pred             cchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhc-CCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHH
Q psy11709        124 PMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQ-CPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELA  202 (474)
Q Consensus       124 ~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~-w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a  202 (474)
                      .+...||..++.++--.++...+...|+.++..+.. .+-+-.-+-+.|.-++-....                 ++.+|
T Consensus       149 g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~R-----------------nFkeA  211 (412)
T COG5187         149 GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRR-----------------NFKEA  211 (412)
T ss_pred             ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHH-----------------hhHHH
Confidence            477899999999999999999999999999888863 111222333446666644444                 67889


Q ss_pred             HHHHHHHhcccCCCCh---hhHHHHHHHHHHHHHcCCCcccc-hhhcCCchhhhcccc-----cHHHHHHHHhhCChh-H
Q psy11709        203 AKVMIELLSTYTAENA---SQAREDAQACILAALADPNTFLL-HPLLTLKPVKFLEGE-----LIHDLLNIFVAEKVN-T  272 (474)
Q Consensus       203 y~~~l~~L~t~~~~~~---~e~~~~A~~~i~~aL~~p~~f~f-~~Ll~~p~v~~L~~~-----~l~~LL~iF~~g~l~-~  272 (474)
                      ...+..-|.||+..+.   +.+...|.-|..  ++-.-+ +. ..++..|-|-++-++     .+.+|..-+-.-|.. .
T Consensus       212 a~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl--~~leR~-diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~  288 (412)
T COG5187         212 AILLSDILPTFESSELISYSRAVRYAIFCGL--LRLERR-DIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGD  288 (412)
T ss_pred             HHHHHHHhccccccccccHHHHHHHHHHhhh--heeehh-hhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchh
Confidence            9999999999998765   234344433332  222111 22 235555544443222     244444443333443 2


Q ss_pred             HHH----HHhhc-hH-hHHhhcCCCHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHH
Q psy11709        273 YQD----FYKQH-KE-YIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIE  331 (474)
Q Consensus       273 y~~----f~~~~-~~-~~~~~~~l~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE  331 (474)
                      |..    |++.- |. |+    |-..+...+-||.=.-+++-.+=|.++.+..|++++++++=|+
T Consensus       289 F~~ll~~~~n~L~~d~fl----~rh~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFgVSV~yvd  349 (412)
T COG5187         289 FMNLLYLFCNSLQDDVFL----GRHVDLFVREMRRRVYAQLLESYRLLSLESMAQTFGVSVEYVD  349 (412)
T ss_pred             hHHHHHHHHhhccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCccHHHHh
Confidence            221    11211 22 22    1123556788998899999998899999999999999976444

>KOG1497|consensus

Probab=86.91  E-value=41  Score=34.79  Aligned_cols=115  Identities=19%  Similarity=0.260  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCcccc-hhhcCCchhhhcccccHHHHHH-----HHhh-CChhHHHHHHhhchHhHHhhcCC-
Q psy11709        219 SQAREDAQACILAALADPNTFLL-HPLLTLKPVKFLEGELIHDLLN-----IFVA-EKVNTYQDFYKQHKEYIVNKLGL-  290 (474)
Q Consensus       219 ~e~~~~A~~~i~~aL~~p~~f~f-~~Ll~~p~v~~L~~~~l~~LL~-----iF~~-g~l~~y~~f~~~~~~~~~~~~~l-  290 (474)
                      -++...|..|.+-|..+|....| ..|..-|.++.+   +.|.+++     -|.. .+++.|..|..-|...- ...|. 
T Consensus       222 ~~aL~~a~~CtlLA~~gpqrsr~Latlfkder~~~l---~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~-~~dgss  297 (399)
T KOG1497|consen  222 LEALKKALQCTLLASAGPQRSRMLATLFKDERCQKL---PAYGILEKMYLERIIRKEELQEFEAFLQPHQKAH-TMDGSS  297 (399)
T ss_pred             HHHHHHhHhheeecCCChHHHHHHHHHhcCcccccc---cchHHHHHHHHHHHhcchhHHHHHHHhcchhhhc-ccCcch
Confidence            46777788899999999988654 555555665555   4444443     3343 47889988875553211 11222 


Q ss_pred             --CHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHH
Q psy11709        291 --DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAK  342 (474)
Q Consensus       291 --~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~agl  342 (474)
                        +...+.+  -||++.+|-   ..+||+++++-++||.+.+|..+=+-|..|-
T Consensus       298 il~ra~~Eh--Nlls~Skly---~nisf~~Lg~ll~i~~ekaekiaa~MI~qeR  346 (399)
T KOG1497|consen  298 ILDRAVIEH--NLLSASKLY---NNISFEELGALLKIDAEKAEKIAAQMITQER  346 (399)
T ss_pred             hhhhHHHHH--hHHHHHHHH---HhccHHHHHHHhCCCHHHHHHHHHHHHhHHH
Confidence              2222222  345555544   4689999999999999999999888877763

>KOG2582|consensus

Probab=85.14  E-value=46  Score=34.99  Aligned_cols=257  Identities=18%  Similarity=0.234  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHHhccChHH---HHHHHHHHHHHHhcccC-CCChhhHHHHHHHHHhccCCCCcchHHHH-HHHHHHHHh
Q psy11709         65 DIESVLNSIVSMLVLINPER---AENLILAFSEKLSKASD-AKLGPVTLRVLWLLFQSLEPTSPMRYHVY-YHLVQIAQN  139 (474)
Q Consensus        65 e~e~~~nlli~ll~~~~~~~---~~~~v~~l~~~l~~~~~-~~~~~~~l~~L~~lfn~l~~~s~~r~~v~-~~il~~a~~  139 (474)
                      +.|-.+-++-+-+.+-+.++   +...+-.+|.-++...- ...|..-++++.+.-..+.+.+. |.... .-+++++-+
T Consensus        74 ~~~~li~~~~~FV~~~n~eqlr~as~~f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-qlT~~H~~l~~~~L~  152 (422)
T KOG2582|consen   74 DPETLIELLNDFVDENNGEQLRLASEIFFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-QLTSIHADLLQLCLE  152 (422)
T ss_pred             CHHHHHHHHHHHHHhcChHHHhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCcc-chhhhHHHHHHHHHH
Confidence            44555555555554445442   12222244444432111 12333335555555555444422 22221 235566777


Q ss_pred             cCchhHHHhhHH-HHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhccc-CCCC
Q psy11709        140 ADQIKSVFKDVD-HLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTY-TAEN  217 (474)
Q Consensus       140 ~~~~~~l~~~l~-~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t~-~~~~  217 (474)
                      .+++....|.++ ++...   ++.++-.+.+++ +.+-||..        |--++  .++.+.| .++  |-.|. ++.-
T Consensus       153 ak~y~~~~p~ld~divei---~~~n~h~~~k~f-L~Y~yYgg--------~icig--lk~fe~A-l~~--~e~~v~~Pa~  215 (422)
T KOG2582|consen  153 AKDYASVLPYLDDDIVEI---CKANPHLDPKYF-LLYLYYGG--------MICIG--LKRFERA-LYL--LEICVTTPAM  215 (422)
T ss_pred             hhcccccCCccchhHHHH---hccCCCCCHHHH-HHHHHhcc--------eeeec--cccHHHH-HHH--HHHHHhcchh
Confidence            777766666666 33222   222333333432 23334433        11111  2344444 111  11222 2322


Q ss_pred             h-h-hHHHHHHHHHHHHHc-CCCcccchhhcCCchhhhccc-c-cHHHHHHHHhhCChhHHHHHHhhchHhHHhhcCC--
Q psy11709        218 A-S-QAREDAQACILAALA-DPNTFLLHPLLTLKPVKFLEG-E-LIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGL--  290 (474)
Q Consensus       218 ~-~-e~~~~A~~~i~~aL~-~p~~f~f~~Ll~~p~v~~L~~-~-~l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l--  290 (474)
                      + + ...|.-.+.+.-.|. --.+|.++.=....+....+. + ++++++.++..+.-.+.+....+|.+-+.++.+.  
T Consensus       216 ~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l  295 (422)
T KOG2582|consen  216 AVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGL  295 (422)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHH
Confidence            2 2 222333444443433 333444443332222222332 2 8999999999999888888877765433133221  


Q ss_pred             CH--HHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCC-hhhHHHHHHhhhhHHH
Q psy11709        291 DH--QENLRKMRLLTFMQLAETKTEMSFDMIQKELDLN-PNQIEAFIIDGKIAAK  342 (474)
Q Consensus       291 ~~--~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~-~~eVE~~VI~aI~agl  342 (474)
                      -.  -.-..|=|++.|...   --+++.++||+..++. .+|||+.|+.-|..|-
T Consensus       296 ~k~av~sl~k~nI~rltkt---F~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~  347 (422)
T KOG2582|consen  296 AKQAVSSLYKKNIQRLTKT---FLSLSLSDIASRVQLASAQEVEKYILQMIEDGE  347 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHhcchHHHHHHHHHHhccCc
Confidence            11  123345555555444   4578999999988876 4899999999999884

>KOG1464|consensus

Probab=84.52  E-value=1.5  Score=44.04  Aligned_cols=75  Identities=17%  Similarity=0.451  Sum_probs=62.4

Q ss_pred             cHHHHHHHHhhCChhhHHHHHHhchH------hHhhhcCCCHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhh
Q psy11709        395 LIHDLLNIFVSEKVNTYQDFYKQHKE------YIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQI  468 (474)
Q Consensus       395 ~l~~LL~iF~~G~~~~y~~~~~~~~~------~~~~~~~l~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eV  468 (474)
                      ..-+|+.+....|+.+|+....+|..      ++..    +.+.+++++|---|+.|..--..|...-|+++|.||+.||
T Consensus       306 AMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIRe----h~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV  381 (440)
T KOG1464|consen  306 AMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIRE----HIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVPEADV  381 (440)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhhccccccHHHHH----HHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCCHHHH
Confidence            44567888889999999999988753      3322    2589999999999999999877777778999999999999


Q ss_pred             hhhcc
Q psy11709        469 EAFII  473 (474)
Q Consensus       469 E~lVI  473 (474)
                      |.+++
T Consensus       382 ~~LLV  386 (440)
T KOG1464|consen  382 ESLLV  386 (440)
T ss_pred             HHHHH
Confidence            99875

>KOG2758|consensus

Probab=81.26  E-value=14  Score=38.20  Aligned_cols=91  Identities=23%  Similarity=0.399  Sum_probs=63.7

Q ss_pred             cHHHHHH-HHhhCChhHHHHHHhhchHhHHhhcCCC--HHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHH
Q psy11709        257 LIHDLLN-IFVAEKVNTYQDFYKQHKEYIVNKLGLD--HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAF  333 (474)
Q Consensus       257 ~l~~LL~-iF~~g~l~~y~~f~~~~~~~~~~~~~l~--~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~  333 (474)
                      |+-+.|. .|..-|+++-+.-..+....+..++=|.  -+.-..-.|++-+-..|-=+..|+.+-+|+.|+.+.+|.|.|
T Consensus       290 PiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCRIHqcIti~mLA~kLnm~~eeaErw  369 (432)
T KOG2758|consen  290 PITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCRIHQCITIDMLADKLNMDPEEAERW  369 (432)
T ss_pred             cHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHheeHHHHHHHhcCCHHHHHHH
Confidence            5555554 3445566665544433332221111110  134567789998888888899999999999999999999999


Q ss_pred             HHhhhhHHHHHHHH
Q psy11709        334 IIDGKIAAKVMIEL  347 (474)
Q Consensus       334 VI~aI~aglv~~kl  347 (474)
                      +++.|+...+.+|.
T Consensus       370 ivnlIr~~rl~Aki  383 (432)
T KOG2758|consen  370 IVNLIRTARLDAKI  383 (432)
T ss_pred             HHHHHHHhhhhhhh
Confidence            99999998777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	474
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	3e-22
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	4e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Length = 169

 Score = 92.7 bits (230), Expect = 3e-22
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 204 KVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEG---ELIHD 260
           +   E++       ++   E     I+ A + P+ F    +L L  V  LEG    +  D
Sbjct: 5   QKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLD 64

Query: 261 LLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQ 320
           LL +F       Y+    +              + + K++ LT + LAE+   + +D + 
Sbjct: 65  LLRLFAHGTWGDYKCNATRLPHL--------SPDQILKLKQLTVLTLAESNKVLPYDTLM 116

Query: 321 KELDL-NPNQIEAFIIDGKIAAKVM 344
            ELD+ N  ++E F+I+  + A ++
Sbjct: 117 VELDVSNVRELEDFLINECMYAGIV 141

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Length = 169

 Score = 92.3 bits (229), Expect = 4e-22
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 12/136 (8%)

Query: 342 KVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEG---ELIHD 398
           +   E++       ++   E     I+ A + P+ F    +L L  V  LEG    +  D
Sbjct: 5   QKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLD 64

Query: 399 LLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQ 458
           LL +F       Y+    +              + + K++ LT + LAE+   + +D + 
Sbjct: 65  LLRLFAHGTWGDYKCNATRLPHL--------SPDQILKLKQLTVLTLAESNKVLPYDTLM 116

Query: 459 KELDL-NPNQIEAFII 473
            ELD+ N  ++E F+I
Sbjct: 117 VELDVSNVRELEDFLI 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 7e-10
 Identities = 90/590 (15%), Positives = 173/590 (29%), Gaps = 200/590 (33%)

Query: 9   PVFIDLLLEDQALELRVYLKNLGAEISDEKSTKGI--EDDLHKIIGVCDA---------C 57
            VF D  +++   + +        ++ D    K I  ++++  II   DA          
Sbjct: 23  SVFEDAFVDN--FDCK--------DVQD--MPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 58  FQDANEAD----IESVLNS----IVSML--VLINPERAENLILAFSEKLSKASD--AKLG 105
                E      +E VL      ++S +      P     + +   ++L   +   AK  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY- 129

Query: 106 PVT-LRVLWLLFQSLEPTSPMRYHVYYH---------LVQIAQNADQIKSVFKDVDH-LK 154
            V+ L+    L Q+L    P +  V            +      + +++         L 
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 155 QQFSQCPPSNEQMQKLLRLLHQA---------------------------LLASKQYR-- 185
                C      ++ L +LL+Q                            LL SK Y   
Sbjct: 189 --LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 186 LLRMQTKSSLCSKTELAA-----KVMIELLSTYTAENASQAREDAQACILAALADPNTFL 240
           LL +    ++ +     A     K+   LL+T         R       L+A    +  L
Sbjct: 247 LLVL---LNVQNAKAWNAFNLSCKI---LLTT---------RFKQVTDFLSAATTTHISL 291

Query: 241 LHPLLTLKP-------VKFLE---GEL------IHDL-LNIFVA---EKVNTYQDFYKQH 280
            H  +TL P       +K+L+    +L       +   L+I      + + T+ D +K  
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKH- 349

Query: 281 KEYIVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQI----EAFII- 335
                +KL                     T  E S +       L P +     +   + 
Sbjct: 350 --VNCDKL--------------------TTIIESSLN------VLEPAEYRKMFDRLSVF 381

Query: 336 --DGKIAAKVMIELLSTYTAENASQAREDAQACILAALAD----PNTFLLHPLLTLKPVK 389
                I   ++  L+  +     S            +L +     +T  +  +     VK
Sbjct: 382 PPSAHIPTILL-SLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 390 FLEGELIHDLLNIFVSEKVNTYQ--------DFYKQHKE-YIVNKLG--LDHQENLRKMR 438
                 +H  +       V+ Y         D    + + Y  + +G  L + E+  +M 
Sbjct: 439 LENEYALHRSI-------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 439 LLT-------FMQ-------LAETKTEMSFDMIQKELDLNPNQIEAFIID 474
           L         F++        A   +    + +Q    L     + +I D
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ---QL--KFYKPYICD 536

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 5e-09
 Identities = 70/494 (14%), Positives = 130/494 (26%), Gaps = 173/494 (35%)

Query: 12  IDLLLEDQALELRVYLKNLGAEISDEKSTKG---IEDDLHKIIGVCDA---------C-- 57
           I L +     ELR  LK         K  +    +  +      V +A         C  
Sbjct: 223 IKLRIHSIQAELRRLLK--------SKPYENCLLVLLN------VQNAKAWNAFNLSCKI 268

Query: 58  ---FQDANEADIESVLN----SIVSMLVLINPERAENLILAFSEKLS-KASD-----AKL 104
               +     D  S       S+    + + P+  ++L     + L  +  D        
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTT 325

Query: 105 GPVTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFK-DVDHLKQQFSQCPPS 163
            P  L ++    +         +  + H+     N D++ ++ +  ++ L+       P+
Sbjct: 326 NPRRLSIIAESIRD----GLATWDNWKHV-----NCDKLTTIIESSLNVLE-------PA 369

Query: 164 NEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQ-AR 222
             +               K +  L +   S         A +   LLS    +       
Sbjct: 370 EYR---------------KMFDRLSVFPPS---------AHIPTILLSLIWFDVIKSDVM 405

Query: 223 EDAQACILAALA--DPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQ------ 274
                    +L    P    +                I  +      +  N Y       
Sbjct: 406 VVVNKLHKYSLVEKQPKESTIS---------------IPSIYLELKVKLENEYALHRSIV 450

Query: 275 DFYKQHKEYIVNKLGLDHQEN---------LRKMRLLTFMQLAETKTEMSFDMIQKELDL 325
           D Y   K +  + L   + +          L+       ++  E  T          LD 
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN------IEHPERMTLFR----MVFLDF 500

Query: 326 NPNQIEAFIIDGKIAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTL 385
                  F ++ KI            TA NAS         IL  L     +  +     
Sbjct: 501 R------F-LEQKIRH--------DSTAWNAS-------GSILNTLQQLKFYKPY----- 533

Query: 386 KPVKFLEGELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQL 445
                     I D    +    VN   DF  + +E ++      + + LR    +  M  
Sbjct: 534 ----------ICDNDPKY-ERLVNAILDFLPKIEENLICS---KYTDLLR----IALMAE 575

Query: 446 AETKTEMSFDMIQK 459
            E   E +   +Q+
Sbjct: 576 DEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	474
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	99.95
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	99.94
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	99.92
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	99.72
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	99.38
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.62
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	98.56
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	98.39
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.35
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	98.25
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	97.93
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	97.38
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.82
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.83
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	95.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.48
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	93.84
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	90.44

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.9e-28  Score=250.92  Aligned_cols=260  Identities=13%  Similarity=0.086  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHhccCC-------C----CcchHHHH--H
Q psy11709         66 IESVLNSIVSMLVLI-NPERAENLILAFSEKLSKASDAKLGPVTLRVLWLLFQSLEP-------T----SPMRYHVY--Y  131 (474)
Q Consensus        66 ~e~~~nlli~ll~~~-~~~~~~~~v~~l~~~l~~~~~~~~~~~~l~~L~~lfn~l~~-------~----s~~r~~v~--~  131 (474)
                      .-.+|+.+|+-+... +   +.+++..+|....+   ...+..++.+|..+...+..       +    ...+..+|  .
T Consensus        58 ~~~ly~~fi~~f~~kin---~L~lv~~~~~~~~~---~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~  131 (393)
T 4b4t_O           58 RLRLYDNFVSKFYDKIN---QLSVVKYLLASLKD---SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDS  131 (393)
T ss_dssp             CHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHH---TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHH
Confidence            356888888777654 5   34555545554433   23577899999988766521       0    11234444  3


Q ss_pred             HHHHHHHhcCchhHHHhhHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHh
Q psy11709        132 HLVQIAQNADQIKSVFKDVDHLKQQFSQCP-PSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELL  210 (474)
Q Consensus       132 ~il~~a~~~~~~~~l~~~l~~l~~~l~~w~-~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L  210 (474)
                      +|..+.-..|++..++..+++++..++..+ +++..|.++|...+.+++.               .+++..+|++.+.|+
T Consensus       132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~---------------~~~~a~~y~~~l~~l  196 (393)
T 4b4t_O          132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKF---------------KNDFNSFYYTSLLYL  196 (393)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHH---------------TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHH---------------hhhHHHHHHHHHHHH
Confidence            444555566889999999999999999887 6778999999999999999               899999999999999


Q ss_pred             cccCCCC---hhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhcccc----cHHHHHHHHhhCChhHHHHHHhhchHh
Q psy11709        211 STYTAEN---ASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGE----LIHDLLNIFVAEKVNTYQDFYKQHKEY  283 (474)
Q Consensus       211 ~t~~~~~---~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~----~l~~LL~iF~~g~l~~y~~f~~~~~~~  283 (474)
                      +|++..+   ..+.+..|..+++.||.+|++|+||+|+.+|.+++|+++    |+++||.+|+.|++.+|+++.+.|.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~  276 (393)
T 4b4t_O          197 STLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISK  276 (393)
T ss_dssp             HHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHH
T ss_pred             hhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Confidence            9998643   356778999999999999999999999999999999753    799999999999999999987766544


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHhhhc--CCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709        284 IVNKLGLDHQENLRKMRLLTFMQLAET--KTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       284 ~~~~~~l~~~~l~~KirLLtL~~La~~--~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl  347 (474)
                      + ..++.+...+.+|||+++|++|++.  .|.|||++|+++|+||.+|||.|||+||+.|++.||+
T Consensus       277 ~-~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkI  341 (393)
T 4b4t_O          277 I-PILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSI  341 (393)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCE
T ss_pred             C-cchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEE
Confidence            3 3334457789999999999999986  6899999999999999999999999999999999876

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}

Probab=99.94  E-value=7.7e-28  Score=221.86  Aligned_cols=118  Identities=28%  Similarity=0.423  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHcCCCcccchhhcCCchhhhcccc---cHHHHHHHHhhCChhHHHHHHhhchHhHHhhcCCCHHHHHHH
Q psy11709        222 REDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRK  298 (474)
Q Consensus       222 ~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~---~l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l~~~~l~~K  298 (474)
                      .+.|.++++.||.+|++|+||||+.+|+|++|+++   |+++||++|++|++.+|.++.+++|       +|+ +.+.+|
T Consensus        23 ~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p-------~L~-~~~~~K   94 (169)
T 3chm_A           23 SEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLP-------HLS-PDQILK   94 (169)
T ss_dssp             GGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSC-------CCC-HHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhCc-------chH-HHHHHH
Confidence            35789999999999999999999999999999875   7999999999999999999866655       456 889999


Q ss_pred             HHHHHHHHhhhcCCCcChHHHHHhhCCC-hhhHHHHHH-hhhhHHHHHHHH
Q psy11709        299 MRLLTFMQLAETKTEMSFDMIQKELDLN-PNQIEAFII-DGKIAAKVMIEL  347 (474)
Q Consensus       299 irLLtL~~La~~~~~lsy~~Ia~~l~i~-~~eVE~~VI-~aI~aglv~~kl  347 (474)
                      ||+|||++||+++|++||++|+++|+|+ .+|||.||| +||++|++.||+
T Consensus        95 lrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gki  145 (169)
T 3chm_A           95 LKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKL  145 (169)
T ss_dssp             HHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEE
T ss_pred             HHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence            9999999999999999999999999999 899999999 999999999886

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}

Probab=99.92  E-value=9.5e-26  Score=207.91  Aligned_cols=105  Identities=28%  Similarity=0.465  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHhcCCCeeecccccCCccccccccc---cHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHH
Q psy11709        361 EDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKM  437 (474)
Q Consensus       361 ~~a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~~---~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~Ki  437 (474)
                      +.|.++|++||.+|++|+|||||.+|+|++|+++   |+++||++|++||+.+|.++.+.+|++       + +.+.+||
T Consensus        24 ~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p~L-------~-~~~~~Kl   95 (169)
T 3chm_A           24 EALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHL-------S-PDQILKL   95 (169)
T ss_dssp             GGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSCCC-------C-HHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhCcch-------H-HHHHHHH
Confidence            4589999999999999999999999999999873   999999999999999999987776643       4 8899999


Q ss_pred             HHHHHHHhHhcCCCCCHHHHHhhcCCC-hhhhhhhcc
Q psy11709        438 RLLTFMQLAETKTEMSFDMIQKELDLN-PNQIEAFII  473 (474)
Q Consensus       438 rlLtL~~La~~~r~lsy~~Ia~~l~i~-~~eVE~lVI  473 (474)
                      |+|||++||+++|++||++|+++|+|+ .+|||+|||
T Consensus        96 rlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI  132 (169)
T 3chm_A           96 KQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLI  132 (169)
T ss_dssp             HHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence            999999999999999999999999999 789999999

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=3.4e-18  Score=177.51  Aligned_cols=129  Identities=18%  Similarity=0.240  Sum_probs=110.3

Q ss_pred             HHHHhhccccc---hhhHHHHHHHHHHHHhcCCCeeecccccCCcccccccc----ccHHHHHHHHhhCChhhHHHHHHh
Q psy11709        345 IELLSTYTAEN---ASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEG----ELIHDLLNIFVSEKVNTYQDFYKQ  417 (474)
Q Consensus       345 ~klL~t~~~~~---~~ea~~~a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~----~~l~~LL~iF~~G~~~~y~~~~~~  417 (474)
                      ..++.+++..+   ..+....|..++++||.+|++|+||+|+++|.+++|++    .|+++||++|++||+.+|.++.+.
T Consensus       193 l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~  272 (393)
T 4b4t_O          193 LLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKV  272 (393)
T ss_dssp             HHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCH
T ss_pred             HHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            44567777432   34777889999999999999999999999999999975    399999999999999999998777


Q ss_pred             chHhHhhhcCCCHHHHHHHHHHHHHHHhHhc--CCCCCHHHHHhhcCCChhhhhhhccC
Q psy11709        418 HKEYIVNKLGLDHQENLRKMRLLTFMQLAET--KTEMSFDMIQKELDLNPNQIEAFIID  474 (474)
Q Consensus       418 ~~~~~~~~~~l~~~~~~~KirlLtL~~La~~--~r~lsy~~Ia~~l~i~~~eVE~lVId  474 (474)
                      |...+ +.++.+...+.+|||+++|++|++.  .|.|||++|+++|+||.+|||.|||+
T Consensus       273 ~~~~~-~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~  330 (393)
T 4b4t_O          273 QISKI-PILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMR  330 (393)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred             hhhhC-cchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHH
Confidence            65543 4444457889999999999999986  68999999999999999999999984

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=99.38  E-value=1e-10  Score=121.06  Aligned_cols=227  Identities=10%  Similarity=0.021  Sum_probs=182.3

Q ss_pred             hhHHHHHHHHHhccCC--CCcchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH-HhH
Q psy11709        106 PVTLRVLWLLFQSLEP--TSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALL-ASK  182 (474)
Q Consensus       106 ~~~l~~L~~lfn~l~~--~s~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~-~~~  182 (474)
                      ..+++.+..+-..+..  ++..-..|+....++....+++..++..+....+..+....++..+..+.....-++. .  
T Consensus       116 ~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~--  193 (394)
T 3txn_A          116 TEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAAD--  193 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHh--
Confidence            3455556666665544  2346667777778888888999999999988888877776788888888777777777 6  


Q ss_pred             HHHHHhhhhccccccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhcccc---cHH
Q psy11709        183 QYRLLRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIH  259 (474)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~---~l~  259 (474)
                                   .+++..|+.+.+....+|+.....++.+.++-+++.+|...+.+++.+++..|......++   |+.
T Consensus       194 -------------~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~  260 (394)
T 3txn_A          194 -------------ERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMK  260 (394)
T ss_dssp             -------------TSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred             -------------ccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHH
Confidence                         8899999999999999998765566778888999999999999999999988876655553   789


Q ss_pred             HHHHHHhhCChhHHHHHHhhchHhHHhhcCC--CHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhh
Q psy11709        260 DLLNIFVAEKVNTYQDFYKQHKEYIVNKLGL--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDG  337 (474)
Q Consensus       260 ~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l--~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~a  337 (474)
                      +|+..|..|++..|......+...+..+.-+  ....+.++||..++..+...-+.|+++.||+.+++++++||.++++.
T Consensus       261 ~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~l  340 (394)
T 3txn_A          261 SVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQM  340 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHH
Confidence            9999999999999999887764322011101  12679999999999999998888999999999999999999999999


Q ss_pred             hhHHHHHHHH
Q psy11709        338 KIAAKVMIEL  347 (474)
Q Consensus       338 I~aglv~~kl  347 (474)
                      |..|.+.|++
T Consensus       341 I~dg~I~a~I  350 (394)
T 3txn_A          341 ILDKKFSGIL  350 (394)
T ss_dssp             HHTTSSCEEE
T ss_pred             HHCCCeeEEE
Confidence            9999887654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.62  E-value=5.3e-06  Score=83.58  Aligned_cols=224  Identities=10%  Similarity=0.043  Sum_probs=157.2

Q ss_pred             HHHHHHHHHhccCCC--CcchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHH
Q psy11709        108 TLRVLWLLFQSLEPT--SPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYR  185 (474)
Q Consensus       108 ~l~~L~~lfn~l~~~--s~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~  185 (474)
                      ++.++..+.......  .+....++..+.++....|++......++........++.+...+..+|.....++..     
T Consensus       154 A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~-----  228 (434)
T 4b4t_Q          154 SLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE-----  228 (434)
T ss_dssp             HHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-----
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH-----
Confidence            444444444443332  3556677777788888888888888888877777777777778888888888888777     


Q ss_pred             HHhhhhccccccchHHHHHHHHHHhcccCCCCh----hhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhc-cc---cc
Q psy11709        186 LLRMQTKSSLCSKTELAAKVMIELLSTYTAENA----SQAREDAQACILAALADPNTFLLHPLLTLKPVKFL-EG---EL  257 (474)
Q Consensus       186 ~~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~----~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L-~~---~~  257 (474)
                                .+++.+++++....+.+|+....    ..+.....-.++..+..+..-....++..+..... .+   .+
T Consensus       229 ----------~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (434)
T 4b4t_Q          229 ----------DKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDA  298 (434)
T ss_dssp             ----------SSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHH
T ss_pred             ----------HHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhH
Confidence                      89999999999999988865322    23333334444444444443333333333322222 22   25


Q ss_pred             HHHHHHHHhhCChhHHHHHHhhchHhHHhhcC-C--CHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHH
Q psy11709        258 IHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLG-L--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFI  334 (474)
Q Consensus       258 l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~-l--~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~V  334 (474)
                      +..+...|..+++..|+.....+...+ .... +  ....+.+.+|-..+..++..-+.++++.||+.++++.++||.|+
T Consensus       299 ~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l  377 (434)
T 4b4t_Q          299 MKAVAEAYNNRSLLDFNTALKQYEKEL-MGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKL  377 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTHHHH-TCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHH
Confidence            788999999999999998877765443 1111 0  13467788899999999988889999999999999999999999


Q ss_pred             HhhhhHHHHHHHH
Q psy11709        335 IDGKIAAKVMIEL  347 (474)
Q Consensus       335 I~aI~aglv~~kl  347 (474)
                      .+.|..|.+.|++
T Consensus       378 ~~lI~~~~i~a~i  390 (434)
T 4b4t_Q          378 SQMILDKIFYGVL  390 (434)
T ss_dssp             HHHHHHTSSCCEE
T ss_pred             HHHHhCCCcceec
Confidence            9999998776554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.56  E-value=1.4e-06  Score=90.86  Aligned_cols=224  Identities=13%  Similarity=0.080  Sum_probs=165.6

Q ss_pred             hHHHHHHHHHhccCCCCcchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy11709        107 VTLRVLWLLFQSLEPTSPMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRL  186 (474)
Q Consensus       107 ~~l~~L~~lfn~l~~~s~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~  186 (474)
                      .+++++..+...-.. +..+..++..+++++-..++...+...++.+...+..- .+++.+.++...-.-++..      
T Consensus       149 ~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-~d~~~~~~lk~~~gl~~l~------  220 (429)
T 4b4t_R          149 NAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-GDWERRNRYKTYYGIHCLA------  220 (429)
T ss_dssp             THHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-CCTHHHHHHHHHHHHGGGG------
T ss_pred             HHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHH------
Confidence            456666666665443 36788999999999999999999999999888877653 3333333332222212222      


Q ss_pred             HhhhhccccccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHcCCCcccc-hhhcCCchhhhc-ccc----cHHH
Q psy11709        187 LRMQTKSSLCSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLL-HPLLTLKPVKFL-EGE----LIHD  260 (474)
Q Consensus       187 ~~~~~~~~~~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f-~~Ll~~p~v~~L-~~~----~l~~  260 (474)
                               .+++..|+++.+..+.+|+..+...+.+.+.-+++.|+.+++.-++ ..++..|.+... +..    ++.+
T Consensus       221 ---------~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~  291 (429)
T 4b4t_R          221 ---------VRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISS  291 (429)
T ss_dssp             ---------TSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHH
T ss_pred             ---------hChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHH
Confidence                     7889999999999889998777667888999999999998877665 347777777654 443    4667


Q ss_pred             HHHHHhhCChhHHHH-HHhhchHhHHhhcCC--CHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhh
Q psy11709        261 LLNIFVAEKVNTYQD-FYKQHKEYIVNKLGL--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDG  337 (474)
Q Consensus       261 LL~iF~~g~l~~y~~-f~~~~~~~~~~~~~l--~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~a  337 (474)
                      ++..|-.+++..|-. +...++..+....-+  ..+.+.+.||..++.+++.--+.|+++.+|+.++++++++|.|+.+-
T Consensus       292 l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~l  371 (429)
T 4b4t_R          292 LTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKF  371 (429)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHH
Confidence            888888888777643 333333222111111  24789999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHH
Q psy11709        338 KIAAKVMIEL  347 (474)
Q Consensus       338 I~aglv~~kl  347 (474)
                      |..|.+.||+
T Consensus       372 I~~g~l~akI  381 (429)
T 4b4t_R          372 IPNKQLNCVI  381 (429)
T ss_dssp             HHHTSSCEEE
T ss_pred             HHcCCeEEEE
Confidence            9999877654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.39  E-value=1.7e-06  Score=90.73  Aligned_cols=207  Identities=12%  Similarity=0.111  Sum_probs=148.9

Q ss_pred             chHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHH
Q psy11709        125 MRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAK  204 (474)
Q Consensus       125 ~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~  204 (474)
                      .+..++...++++-..++.......+..+..-...-...+..+..+|.....++..               .+++.++|+
T Consensus       175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~---------------e~~y~~a~~  239 (445)
T 4b4t_P          175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH---------------KREYLEVAQ  239 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH---------------HCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH---------------hhhHHHHHH
Confidence            45566777777777777777777777766555555566778888898888888887               889999999


Q ss_pred             HHHHHhcccCCC-ChhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhh-ccc-ccHHHHHHHHhhCChhHHHHHHhhch
Q psy11709        205 VMIELLSTYTAE-NASQAREDAQACILAALADPNTFLLHPLLTLKPVKF-LEG-ELIHDLLNIFVAEKVNTYQDFYKQHK  281 (474)
Q Consensus       205 ~~l~~L~t~~~~-~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~-L~~-~~l~~LL~iF~~g~l~~y~~f~~~~~  281 (474)
                      +......+|+.. +.......-..++...+.+|..-..+.+++.+.... ++. +++.+|++.|..+++..|..+...+.
T Consensus       240 ~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~  319 (445)
T 4b4t_P          240 YLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE  319 (445)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred             HHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence            988888877543 332233333445555667776656676776443321 222 25889999999999999998877665


Q ss_pred             HhHHhhcCC-------C--HHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709        282 EYIVNKLGL-------D--HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       282 ~~~~~~~~l-------~--~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl  347 (474)
                      ..+ ....+       .  -..+.+.++--.+..++.--+.|+++.||+.+++|.++||.++.+.|..|.+.||+
T Consensus       320 ~~L-~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akI  393 (445)
T 4b4t_P          320 PVL-NEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKV  393 (445)
T ss_dssp             SST-TTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEE
T ss_pred             HHh-cccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEE
Confidence            444 22221       1  14566777766777777767899999999999999999999999999999777655

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.35  E-value=4.3e-05  Score=78.96  Aligned_cols=125  Identities=10%  Similarity=0.110  Sum_probs=97.6

Q ss_pred             hhccccchhhHHHHHHHHHHHHhcCCCeeecccccCCccccccccc---cHHHHHHHHhhCChhhHHHHHHhchHhHhhh
Q psy11709        349 STYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGE---LIHDLLNIFVSEKVNTYQDFYKQHKEYIVNK  425 (474)
Q Consensus       349 ~t~~~~~~~ea~~~a~~li~~Al~~p~vy~F~eLl~~p~v~~L~~~---~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~  425 (474)
                      .+|++...+++...++-++..++...+.+++++++..|......++   |+.+|+..|..|++..|......+...+..+
T Consensus       209 ~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D  288 (394)
T 3txn_A          209 EGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAED  288 (394)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTS
T ss_pred             hcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            3555544445666677788888888888888888887765444443   8999999999999999999888775432121


Q ss_pred             cCC--CHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhhcc
Q psy11709        426 LGL--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFII  473 (474)
Q Consensus       426 ~~l--~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~lVI  473 (474)
                      .-+  +...+.++||..+|..+...-+.|+++.||+.+++|+++||.+++
T Consensus       289 ~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~  338 (394)
T 3txn_A          289 VIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLS  338 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHH
Confidence            111  246899999999999999988889999999999999999999875

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=98.25  E-value=3.8e-06  Score=79.22  Aligned_cols=143  Identities=10%  Similarity=0.102  Sum_probs=106.3

Q ss_pred             ccchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHcCCCcccchhhcCCchhhhcccccHHHHHHHHhhCChhHHHH
Q psy11709        196 CSKTELAAKVMIELLSTYTAENASQAREDAQACILAALADPNTFLLHPLLTLKPVKFLEGELIHDLLNIFVAEKVNTYQD  275 (474)
Q Consensus       196 ~~~~~~ay~~~l~~L~t~~~~~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~~p~v~~L~~~~l~~LL~iF~~g~l~~y~~  275 (474)
                      .+++.+|+..+...+..++.......+..-.-++...|..-.+=.++ ++..+.     ..++.+|..++..||+..|++
T Consensus        27 ~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~-ll~~~~-----~~~y~~L~~Avr~Gdl~~f~~  100 (203)
T 3t5x_A           27 DSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVE-LLKKYH-----LMQFAEVTRAVSEGNLLLLHE  100 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHH-HHHHTT-----CGGGHHHHHHHHHTCHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHH-HhhhCc-----hhHHHHHHHHHHhCCHHHHHH
Confidence            77899999999998887765433445455555555555543332222 221111     126889999999999999999


Q ss_pred             HHhhchHhHHhhcCCCHHHHHHHHHHHHHHHhhhc------CCCcChHHHHHhhCC------ChhhHHHHHHhhhhHHHH
Q psy11709        276 FYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAET------KTEMSFDMIQKELDL------NPNQIEAFIIDGKIAAKV  343 (474)
Q Consensus       276 f~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~------~~~lsy~~Ia~~l~i------~~~eVE~~VI~aI~aglv  343 (474)
                      ..++|..++ -+-|+  -.+.+|+|.+.+-.+...      ...||+++|+.++++      +.+|||.+|.++|+.|.+
T Consensus       101 ~l~~~~~~f-~~~~~--~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~I  177 (203)
T 3t5x_A          101 ALAKHEAFF-IRCGI--FLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHV  177 (203)
T ss_dssp             HHHHTHHHH-HHHTC--HHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHhHHHH-HHCCh--HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCce
Confidence            999998877 55565  257899999998888663      578999999999964      789999999999999988


Q ss_pred             HHHH
Q psy11709        344 MIEL  347 (474)
Q Consensus       344 ~~kl  347 (474)
                      .|++
T Consensus       178 kg~I  181 (203)
T 3t5x_A          178 KGYI  181 (203)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            7643

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=97.93  E-value=0.001  Score=69.98  Aligned_cols=224  Identities=13%  Similarity=0.077  Sum_probs=142.2

Q ss_pred             ChhhHHHHHHHHHhccCCC-C-------c-ch---HHHHHHHHHHHHhcCchhHHHhhHHHHHHhhh--cCC-CCHHHHH
Q psy11709        104 LGPVTLRVLWLLFQSLEPT-S-------P-MR---YHVYYHLVQIAQNADQIKSVFKDVDHLKQQFS--QCP-PSNEQMQ  168 (474)
Q Consensus       104 ~~~~~l~~L~~lfn~l~~~-s-------~-~r---~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~--~w~-~~~~~~~  168 (474)
                      ..+.+-+++...||.--.+ +       | -|   +.+...+.++.-+-+..+.+++.++.++.--.  ..+ -+..++.
T Consensus       141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v  220 (455)
T 3t5v_B          141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI  220 (455)
T ss_dssp             HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence            4567889999999984332 1       1 12   23334556677777888888888887766311  111 2444555


Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhcc-cCCCC----h-hhHHHHHHHHHHHHHcCCCcccch
Q psy11709        169 KLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLST-YTAEN----A-SQAREDAQACILAALADPNTFLLH  242 (474)
Q Consensus       169 ~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~t-~~~~~----~-~e~~~~A~~~i~~aL~~p~~f~f~  242 (474)
                      .++--...++--               .+++.+|+.++...+.. +..+.    . ...+....-+|...|..-.+ --.
T Consensus       221 ~Y~YYlGr~~~~---------------~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~-P~~  284 (455)
T 3t5v_B          221 EYRYLLGRYYLL---------------NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM-VKW  284 (455)
T ss_dssp             HHHHHHHHHHHH---------------TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC-BCH
T ss_pred             eeeHHHHHHHHH---------------HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC-CCH
Confidence            554444444444               78899999998887775 43321    1 22333333444444443211 111


Q ss_pred             hhcCCchhhhccccc-HHHHHHHHhhCChhHHHHHHhhchHhHHhhcCCCHHHHHHHHHHHHHHHhhhc----------C
Q psy11709        243 PLLTLKPVKFLEGEL-IHDLLNIFVAEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAET----------K  311 (474)
Q Consensus       243 ~Ll~~p~v~~L~~~~-l~~LL~iF~~g~l~~y~~f~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~----------~  311 (474)
                      .++.-|.-..|  .+ +.+|..++..||+..|+...++|..++ -+-|+ .-.+..|+|.+++-.+..+          .
T Consensus       285 ~ll~k~~~~~L--~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f-~~~gi-ly~LlerLr~~v~RnLirkv~~~~~~~~~~  360 (455)
T 3t5v_B          285 GPLRPFLSQET--IDNWSVLYKHVRYGNIQGVSLWLRQNERHL-CARQL-LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQ  360 (455)
T ss_dssp             HHHGGGSCHHH--HHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HHTTC-HHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             HHHcccchHHH--HHHHHHHHHHHHhCCHHHHHHHHHHhHHHH-HHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            12222210011  13 678999999999999999999998777 44443 1468888998865444331          3


Q ss_pred             CCcChHHHHHhhC---------------------CChhhHHHHHHhhhhHHHHHHHH
Q psy11709        312 TEMSFDMIQKELD---------------------LNPNQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       312 ~~lsy~~Ia~~l~---------------------i~~~eVE~~VI~aI~aglv~~kl  347 (474)
                      ..||++.|+.+++                     ++.+|||-+|.++|+.|++.|++
T Consensus       361 srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyI  417 (455)
T 3t5v_B          361 NKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANC  417 (455)
T ss_dssp             CEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEE
T ss_pred             CeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            6899999999998                     57889999999999999888654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.0024  Score=67.96  Aligned_cols=201  Identities=10%  Similarity=0.051  Sum_probs=126.5

Q ss_pred             cchHHHHHHHHHHHHhcCchhHHHhhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHH
Q psy11709        124 PMRYHVYYHLVQIAQNADQIKSVFKDVDHLKQQFSQCPPSNEQMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAA  203 (474)
Q Consensus       124 ~~r~~v~~~il~~a~~~~~~~~l~~~l~~l~~~l~~w~~~~~~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay  203 (474)
                      ..+..++.-++...-..+..+.....+.+..  +-+-..++.+..+|+--.......               .+++.+|+
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~---------------q~~Y~eA~  290 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAI---------------QLDYSTAN  290 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHH---------------TTCHHHHH
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHH---------------hccHHHHH
Confidence            3555566666666666666655555555442  112225667777776666666666               78899999


Q ss_pred             HHHHHHhcccCCCC-hhhHHHHHHH-HHHHHHcCCCcccchhhcCCchhhh-cccccHHHHHHHHhhCChhHHHHHHhhc
Q psy11709        204 KVMIELLSTYTAEN-ASQAREDAQA-CILAALADPNTFLLHPLLTLKPVKF-LEGELIHDLLNIFVAEKVNTYQDFYKQH  280 (474)
Q Consensus       204 ~~~l~~L~t~~~~~-~~e~~~~A~~-~i~~aL~~p~~f~f~~Ll~~p~v~~-L~~~~l~~LL~iF~~g~l~~y~~f~~~~  280 (474)
                      +++...++..+... +..-+..+.+ +|+.-|....+=.. .++..|..+. |  .|+++|.++|..||+..|+....+|
T Consensus       291 ~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf~q~~l~~~L--~pY~~Lv~Avr~GdL~~F~~~L~~h  367 (523)
T 4b4t_S          291 EYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPEL-SFFHQSNMQKSL--LPYYHLTKAVKLGDLKKFTSTITKY  367 (523)
T ss_dssp             HHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCH-HHHTTTSCHHHH--HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCCh-HHhhchhHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            99999887554433 2223344443 34444432222111 1333333321 1  2799999999999999999999999


Q ss_pred             hHhHHhhcCCCHHHHHHHHHHHHH----HHhhhcCCCcChHHHHHhhCCC-hhhHHHHHHhhhhHHHHHHHH
Q psy11709        281 KEYIVNKLGLDHQENLRKMRLLTF----MQLAETKTEMSFDMIQKELDLN-PNQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       281 ~~~~~~~~~l~~~~l~~KirLLtL----~~La~~~~~lsy~~Ia~~l~i~-~~eVE~~VI~aI~aglv~~kl  347 (474)
                      ..++ .+-|.-  .+..|.|.-..    ..+.-.-..||+++|+..++++ ++|+|..|-++|+.|.+.|.+
T Consensus       368 ~~~F-~~Dgty--~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~I  436 (523)
T 4b4t_S          368 KQLL-LKDDTY--QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKI  436 (523)
T ss_dssp             HHHH-HHTTCT--HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEE
T ss_pred             ccee-ccCChh--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEE
Confidence            7776 333432  24444443322    2222224579999999999996 578999999999999877543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.18  Score=52.38  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             ccHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCC------C--HHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCCh
Q psy11709        394 ELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGL------D--HQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNP  465 (474)
Q Consensus       394 ~~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l------~--~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~  465 (474)
                      +++..|+++|..+++..|..+...+...+.++...      .  ...+.+.++--.|..++.--+.|+++.||+.+++|.
T Consensus       294 ~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~  373 (445)
T 4b4t_P          294 ESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTE  373 (445)
T ss_dssp             HHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCH
Confidence            58889999999999999998887775543121111      1  256788888888888888889999999999999999


Q ss_pred             hhhhhhcc
Q psy11709        466 NQIEAFII  473 (474)
Q Consensus       466 ~eVE~lVI  473 (474)
                      ++||.++.
T Consensus       374 ~evE~~ls  381 (445)
T 4b4t_P          374 SQTETYIS  381 (445)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.031  Score=57.91  Aligned_cols=128  Identities=13%  Similarity=0.117  Sum_probs=94.3

Q ss_pred             HHHhhccccchhhHHHHHHHHHHHHhcCCCeeecc-cccCCcccccc-cc-c---cHHHHHHHHhhCChhhHHH-HHHhc
Q psy11709        346 ELLSTYTAENASQAREDAQACILAALADPNTFLLH-PLLTLKPVKFL-EG-E---LIHDLLNIFVSEKVNTYQD-FYKQH  418 (474)
Q Consensus       346 klL~t~~~~~~~ea~~~a~~li~~Al~~p~vy~F~-eLl~~p~v~~L-~~-~---~l~~LL~iF~~G~~~~y~~-~~~~~  418 (474)
                      ..+.||+..+...+...+.-++..|+..++.-++. .++.-|.+... .. +   ++.+++..|-.+.+..|-. ....+
T Consensus       233 e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~  312 (429)
T 4b4t_R          233 DSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETY  312 (429)
T ss_dssp             HHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34567887666678888999999999887766543 46666665443 33 2   5667788888888887643 44444


Q ss_pred             hHhHhhhc--CCCHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhhcc
Q psy11709        419 KEYIVNKL--GLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAFII  473 (474)
Q Consensus       419 ~~~~~~~~--~l~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~lVI  473 (474)
                      +..+..+.  .-+.+.+.+.||...+..++.-.+.|+++.+|+.++++++++|.++.
T Consensus       313 ~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~  369 (429)
T 4b4t_R          313 ANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLG  369 (429)
T ss_dssp             STTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred             HhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHH
Confidence            43321221  22468999999999999999999999999999999999999999874

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=95.79  E-value=0.0097  Score=55.74  Aligned_cols=76  Identities=12%  Similarity=0.311  Sum_probs=62.4

Q ss_pred             cHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCHHHHHHHHHHHHHHHhHh------cCCCCCHHHHHhhcCC-----
Q psy11709        395 LIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDHQENLRKMRLLTFMQLAE------TKTEMSFDMIQKELDL-----  463 (474)
Q Consensus       395 ~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~~~~~~KirlLtL~~La~------~~r~lsy~~Ia~~l~i-----  463 (474)
                      ++.+|.+++..||+..|++..++|..++ -+-|+  -.+.+|+|.+.+-.+..      ....||+++|+.++++     
T Consensus        82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f-~~~~~--~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~  158 (203)
T 3t5x_A           82 QFAEVTRAVSEGNLLLLHEALAKHEAFF-IRCGI--FLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVED  158 (203)
T ss_dssp             GGHHHHHHHHHTCHHHHHHHHHHTHHHH-HHHTC--HHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhHHHH-HHCCh--HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC
Confidence            5778999999999999999999998765 33333  35789999999888866      3678999999999964     


Q ss_pred             -Chhhhhhhcc
Q psy11709        464 -NPNQIEAFII  473 (474)
Q Consensus       464 -~~~eVE~lVI  473 (474)
                       +.+|||.+|.
T Consensus       159 ~~~~evE~ila  169 (203)
T 3t5x_A          159 VDIDEVQCILA  169 (203)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence             6789998863

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.48  E-value=2.2  Score=42.05  Aligned_cols=80  Identities=10%  Similarity=0.135  Sum_probs=64.4

Q ss_pred             ccHHHHHHHHhhCChhhHHHHHHhchHhHhhhcCC--CHHHHHHHHHHHHHHHhHhcCCCCCHHHHHhhcCCChhhhhhh
Q psy11709        394 ELIHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGL--DHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLNPNQIEAF  471 (474)
Q Consensus       394 ~~l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l--~~~~~~~KirlLtL~~La~~~r~lsy~~Ia~~l~i~~~eVE~l  471 (474)
                      +++..+...|..+++..|+.....+...+..+..+  ....+.+.++...+..++...+.++++.|++.++++.++||.+
T Consensus       297 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~  376 (434)
T 4b4t_Q          297 DAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGK  376 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHH
Confidence            47788899999999999999888776543111101  2357788899999999999889999999999999999999988


Q ss_pred             cc
Q psy11709        472 II  473 (474)
Q Consensus       472 VI  473 (474)
                      +.
T Consensus       377 l~  378 (434)
T 4b4t_Q          377 LS  378 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=93.84  E-value=1.9  Score=40.67  Aligned_cols=183  Identities=9%  Similarity=0.062  Sum_probs=108.8

Q ss_pred             cCchhHHHhhHHHHHHhhhcCCC-----CHH---HHHHHHHHHHHHHHHhHHHHHHhhhhccccccchHHHHHHHHHHhc
Q psy11709        140 ADQIKSVFKDVDHLKQQFSQCPP-----SNE---QMQKLLRLLHQALLASKQYRLLRMQTKSSLCSKTELAAKVMIELLS  211 (474)
Q Consensus       140 ~~~~~~l~~~l~~l~~~l~~w~~-----~~~---~~~~ly~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~l~~L~  211 (474)
                      .++++.+...+..++.-|...++     +..   -.|.+|..-+.....               .++.+++-+++-.+-.
T Consensus        20 ~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~---------------~~D~~~F~~~~~qLk~   84 (229)
T 4b0z_A           20 RKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQ---------------TCDIESFARYASQVIP   84 (229)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHH---------------TTCHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHH
Confidence            34566666666666655554442     221   246666665544444               6666665444333222


Q ss_pred             ccCCC---ChhhHHHHHHHHHHHHHcCCCcccchhhcC-Cchhhhcccc----cHHHHHHHHhhCChhHHHHHHhhchHh
Q psy11709        212 TYTAE---NASQAREDAQACILAALADPNTFLLHPLLT-LKPVKFLEGE----LIHDLLNIFVAEKVNTYQDFYKQHKEY  283 (474)
Q Consensus       212 t~~~~---~~~e~~~~A~~~i~~aL~~p~~f~f~~Ll~-~p~v~~L~~~----~l~~LL~iF~~g~l~~y~~f~~~~~~~  283 (474)
                      -|...   +.....=.+..++.. |.-.++-+|.-.+. +|.-..++++    ...+|-+.+..|++..|-...++.|.-
T Consensus        85 ~Y~~~~~~s~~~~e~~~~~LL~l-L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~  163 (229)
T 4b0z_A           85 FYHDSLVPSSRMGLVTGLNLLYL-LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP  163 (229)
T ss_dssp             HHSSCCCCCTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCG
T ss_pred             HHHccCCCCccHHHHHHHHHHHH-HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccc
Confidence            23321   111222234444443 33445545543332 3332223444    357888999999999998888776521


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHhhhcCCCcChHHHHHhhCCC-hhhHHHHHHh---hhhHH
Q psy11709        284 IVNKLGLDHQENLRKMRLLTFMQLAETKTEMSFDMIQKELDLN-PNQIEAFIID---GKIAA  341 (474)
Q Consensus       284 ~~~~~~l~~~~l~~KirLLtL~~La~~~~~lsy~~Ia~~l~i~-~~eVE~~VI~---aI~ag  341 (474)
                      .   .+.=-+.+..++|.-++..+..+-+.||.+++++-|+.+ ++|++.|+-+   +|+.|
T Consensus       164 ~---~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg  222 (229)
T 4b0z_A          164 E---FSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDG  222 (229)
T ss_dssp             G---GHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETT
T ss_pred             h---HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCC
Confidence            0   000135688899999988888887889999999999996 5789999887   56555

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=90.44  E-value=0.33  Score=50.80  Aligned_cols=74  Identities=15%  Similarity=0.308  Sum_probs=58.7

Q ss_pred             HHHHHHHHhhCChhhHHHHHHhchHhHhhhcCCCH-HHHHHHHHHHHHHHhHhc----------CCCCCHHHHHhhcC--
Q psy11709        396 IHDLLNIFVSEKVNTYQDFYKQHKEYIVNKLGLDH-QENLRKMRLLTFMQLAET----------KTEMSFDMIQKELD--  462 (474)
Q Consensus       396 l~~LL~iF~~G~~~~y~~~~~~~~~~~~~~~~l~~-~~~~~KirlLtL~~La~~----------~r~lsy~~Ia~~l~--  462 (474)
                      +..|.++...||+..|+...++|..++... |  . -.+..|+|.+++-.+..+          ...||+++|+.+++  
T Consensus       299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~-g--ily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~  375 (455)
T 3t5v_B          299 WSVLYKHVRYGNIQGVSLWLRQNERHLCAR-Q--LLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLS  375 (455)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTHHHHHHT-T--CHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHhHHHHHHc-C--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhc
Confidence            678899999999999999999998765333 2  4 578899999966555442          26899999999998  


Q ss_pred             -------------------CChhhhhhhc
Q psy11709        463 -------------------LNPNQIEAFI  472 (474)
Q Consensus       463 -------------------i~~~eVE~lV  472 (474)
                                         ++.+|||-+|
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~devEcIl  404 (455)
T 3t5v_B          376 IGPTFEDPGAQEITIYNGIHSPKNVENVL  404 (455)
T ss_dssp             HCCCTTSTTCCCCCTTTSSCCSSCHHHHH
T ss_pred             cCccccccccccccccccCCCHHHHHHHH
Confidence                               4667999776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	474
d1ufma_	84	COP9 signalosome complex subunit 4, GSN4 {Mouse (M	82.69

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.69  E-value=0.37  Score=36.66  Aligned_cols=40  Identities=8%  Similarity=0.112  Sum_probs=34.2

Q ss_pred             hhcCCCcChHHHHHhhCCChhhHHHHHHhhhhHHHHHHHH
Q psy11709        308 AETKTEMSFDMIQKELDLNPNQIEAFIIDGKIAAKVMIEL  347 (474)
Q Consensus       308 a~~~~~lsy~~Ia~~l~i~~~eVE~~VI~aI~aglv~~kl  347 (474)
                      +.-=..|+++.+|+.++++.++||.||.+.|..|.+.+|+
T Consensus        25 s~~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akI   64 (84)
T d1ufma_          25 SKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFI   64 (84)
T ss_dssp             HHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEE
T ss_pred             HHhhceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEE
Confidence            3335779999999999999999999999999999766554