Psyllid ID: psy11714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MKQGDSKEELLGSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHccccHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccHHHHHHHHcccccEEEccccccccHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEcccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mkqgdskeelLGSVHNIarqdycvdapvevaltpQEKRFLLVAERGDCATVRKMLDElkdqpevfnincvdplnrSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIhvhgqpyvsenkgRTIFMMLDelkdqpevfnincvdplnrSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIhvhgqpysweavdrssstftpditPLILAAHMNNYEILKILLDrgatlpmphdvr
Flexible Loop (DISEMBL)
MKQGDSKEELLGSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDelkdqpevfninCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIhvhgqpyvsenKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLdrgatlpmphdvr
Low Complexity Region (SEG)
MKQGDSKEELLGSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSliaaienenielinilleyniQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSliaaienenielinilleyniQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR
Disordered region (IsUnstruct)
***********GSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA*********
Disordered Region (DISOPRED)
********************************TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL*******
Disordered Region (DISEMBL)
********ELLGSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR
Disordered Region (DISPRO)
*****************************VALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKI*VHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQGDSKEELLGSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
P19334	1275	Transient receptor potent	yes	N/A	0.345	0.073	0.811	2e-51
Q9VJJ7	1128	Transient receptor potent	no	N/A	0.463	0.111	0.612	1e-39
P48994	1124	Transient-receptor-potent	no	N/A	0.422	0.102	0.612	2e-34
Q9QX29	975	Short transient receptor	yes	N/A	0.419	0.116	0.508	2e-26
O62852	974	Short transient receptor	yes	N/A	0.419	0.117	0.508	2e-26
Q9UL62	973	Short transient receptor	yes	N/A	0.419	0.117	0.508	3e-26
Q9QUQ5	974	Short transient receptor	no	N/A	0.400	0.111	0.545	4e-23
Q9UBN4	977	Short transient receptor	no	N/A	0.400	0.111	0.545	4e-23
O35119	977	Short transient receptor	no	N/A	0.400	0.111	0.545	4e-23
P79100	979	Short transient receptor	no	N/A	0.400	0.111	0.545	4e-23

>sp|P19334|TRP_DROME Transient receptor potential protein OS=Drosophila melanogaster GN=trp PE=1 SV=3

 Score =  202 bits (513), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/117 (81%), Positives = 104/117 (88%)

Query: 156 FNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEE 215
           FNINC DP+NRS+LI+AIENEN +L+ ILLE+NI+V DALLHAI EEYVEAVE LL+WEE
Sbjct: 61  FNINCTDPMNRSALISAIENENFDLMVILLEHNIEVGDALLHAISEEYVEAVEELLQWEE 120

Query: 216 KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
             H  GQPYSWEAVDRS STFT DITPLILAAH NNYEILKILLDRGATLPMPHDV+
Sbjct: 121 TNHKEGQPYSWEAVDRSKSTFTVDITPLILAAHRNNYEILKILLDRGATLPMPHDVK 177

A light-sensitive calcium channel that is required for inositide-mediated Ca(2+) entry in the retina during phospholipase C (PLC)-mediated phototransduction. Ca(2+) influx may then feed back and inhibit PLC, thereby facilitating phosphatidylinositol 4,5 bisphosphate (PIP2) recycling. Trp and trpl act together in the light response, though it is unclear whether as heteromultimers or as distinct units, and are activated by fatty acids and metabolic stress. Also required for olfactory adaptation and may be involved in olfactory system development.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VJJ7|TRPG_DROME Transient receptor potential-gamma protein OS=Drosophila melanogaster GN=trpgamma PE=1 SV=2

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 101/129 (78%), Gaps = 3/129 (2%)

Query: 145 MLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYV 204
           ML + +D  E  N+NCVDPL R++L+ AI+NEN+E++ +L+ YN+  KDALLH+I EE+V
Sbjct: 39  MLQKAQDT-EYINVNCVDPLGRTALLMAIDNENLEMVELLINYNVDTKDALLHSISEEFV 97

Query: 205 EAVEILLEWEE-KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           EAVE+LL+ E    H  G  +SWE+    +STFTPDITPLILAAH +NYEI+KILLDRGA
Sbjct: 98  EAVEVLLDHENVTFHSEGN-HSWESASEDTSTFTPDITPLILAAHRDNYEIIKILLDRGA 156

Query: 264 TLPMPHDVR 272
            LPMPHDVR
Sbjct: 157 VLPMPHDVR 165

A light-sensitive calcium channel that is required for inositide-mediated Ca(2+) entry in the retina during phospholipase C (PLC)-mediated phototransduction (By similarity). Forms a regulated cation channel when heteromultimerized with trpl.

Drosophila melanogaster (taxid: 7227)

>sp|P48994|TRPL_DROME Transient-receptor-potential-like protein OS=Drosophila melanogaster GN=trpl PE=1 SV=2

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEK 216
           NINC+DPL R +L  AI+NEN+E++ +L+   ++ KDALLHAI  E+VEAVE+LLE EE 
Sbjct: 71  NINCMDPLGRRALTLAIDNENLEMVELLVVMGVETKDALLHAINAEFVEAVELLLEHEEL 130

Query: 217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
           I+  G+PYSW+ VD +++ F PDITPL+LAAH NN+EIL+ILLDRGA +P+PHD+R
Sbjct: 131 IYKEGEPYSWQKVDINTAMFAPDITPLMLAAHKNNFEILRILLDRGAAVPVPHDIR 186

A light-sensitive calcium channel that is required for inositide-mediated Ca(2+) entry in the retina during phospholipase C (PLC)-mediated phototransduction. Required for vision in the dark and in dim light. Binds calmodulin. Trp and trpl act together in the light response, although it is unclear whether as heteromultimers or distinct units. Also forms a functional cation channel with trp-gamma. Activated by fatty acids, metabolic stress, inositols and GTP-binding proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q9QX29|TRPC5_MOUSE Short transient receptor potential channel 5 OS=Mus musculus GN=Trpc5 PE=1 SV=2

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 84/116 (72%), Gaps = 2/116 (1%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEK 216
           NINC+DPL RS+L+ AIENEN+E++ +LL +++ V DALL+AI++E V AVE+LL + + 
Sbjct: 62  NINCMDPLGRSALLIAIENENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRKP 121

Query: 217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
                 P     +D   S FTPDITP++LAAH NNYEI+K+L+ +  T+P PH +R
Sbjct: 122 SGEKQVPTL--MMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIR 175

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective. May also be activated by intracellular calcium store depletion.

Mus musculus (taxid: 10090)

>sp|O62852|TRPC5_RABIT Short transient receptor potential channel 5 OS=Oryctolagus cuniculus GN=TRPC5 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 84/116 (72%), Gaps = 2/116 (1%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEK 216
           NINC+DPL RS+L+ AIENEN+E++ +LL +++ V DALL+AI++E V AVE+LL + + 
Sbjct: 62  NINCMDPLGRSALLIAIENENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRKP 121

Query: 217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
                 P     +D   S FTPDITP++LAAH NNYEI+K+L+ +  T+P PH +R
Sbjct: 122 SGEKQVPTL--MMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIR 175

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective. May also be activated by intracellular calcium store depletion.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q9UL62|TRPC5_HUMAN Short transient receptor potential channel 5 OS=Homo sapiens GN=TRPC5 PE=1 SV=1

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 83/116 (71%), Gaps = 2/116 (1%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEK 216
           NINC+DPL RS+L+ AIENEN+E++ +LL +++ V DALL+AI++E V AVE+LL +   
Sbjct: 62  NINCMDPLGRSALLIAIENENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRRP 121

Query: 217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
                 P     +D   S FTPDITP++LAAH NNYEI+K+L+ +  T+P PH +R
Sbjct: 122 SGEKQVPTL--MMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIR 175

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective (By similarity). May also be activated by intracellular calcium store depletion.

Homo sapiens (taxid: 9606)

>sp|Q9QUQ5|TRPC4_MOUSE Short transient receptor potential channel 4 OS=Mus musculus GN=Trpc4 PE=1 SV=1

 Score =  108 bits (270), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 88/121 (72%), Gaps = 12/121 (9%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEK 216
           NINC+DPL R++L+ AIENEN+ELI +LL +N+ V DALLHAI++E V AVE+LL     
Sbjct: 62  NINCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLN---- 117

Query: 217 IHVHGQPYSWEAV-----DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV 271
              H +P   + V     D+  S FTPDITP+ILAAH NNYEI+K+L+ +G ++P PH+V
Sbjct: 118 ---HKKPSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEV 174

Query: 272 R 272
           R
Sbjct: 175 R 175

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Acts as a cell-cell contact-dependent endothelial calcium entry channel. Has also been shown to be calcium-selective (By similarity). May also be activated by intracellular calcium store depletion. Trpc4 deficient mice lack a store-operated calcium entry in endothelial cells.

Mus musculus (taxid: 10090)

>sp|Q9UBN4|TRPC4_HUMAN Short transient receptor potential channel 4 OS=Homo sapiens GN=TRPC4 PE=1 SV=1

 Score =  108 bits (270), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 88/121 (72%), Gaps = 12/121 (9%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEK 216
           NINC+DPL R++L+ AIENEN+ELI +LL +N+ V DALLHAI++E V AVE+LL     
Sbjct: 62  NINCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLN---- 117

Query: 217 IHVHGQPYSWEAV-----DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV 271
              H +P   + V     D+  S FTPDITP+ILAAH NNYEI+K+L+ +G ++P PH+V
Sbjct: 118 ---HKKPSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEV 174

Query: 272 R 272
           R
Sbjct: 175 R 175

Form a receptor-activated non-selective calcium permeant cation channel. Acts as a cell-cell contact-dependent endothelial calcium entry channel. Probably operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Mediates cation entry, with an enhanced permeability to barium over calcium. May also be activated by intracellular calcium store depletion.

Homo sapiens (taxid: 9606)

>sp|O35119|TRPC4_RAT Short transient receptor potential channel 4 OS=Rattus norvegicus GN=Trpc4 PE=1 SV=2

 Score =  108 bits (270), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 88/121 (72%), Gaps = 12/121 (9%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEK 216
           NINC+DPL R++L+ AIENEN+ELI +LL +N+ V DALLHAI++E V AVE+LL     
Sbjct: 62  NINCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLN---- 117

Query: 217 IHVHGQPYSWEAV-----DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV 271
              H +P   + V     D+  S FTPDITP+ILAAH NNYEI+K+L+ +G ++P PH+V
Sbjct: 118 ---HKKPSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEV 174

Query: 272 R 272
           R
Sbjct: 175 R 175

Thought to form non-selective a receptor-activated calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Acts as a cell-cell contact-dependent endothelial calcium entry channel. Has also been shown to be calcium-selective (By similarity). May also be activated by intracellular calcium store depletion.

Rattus norvegicus (taxid: 10116)

>sp|P79100|TRPC4_BOVIN Short transient receptor potential channel 4 OS=Bos taurus GN=TRPC4 PE=2 SV=2

 Score =  108 bits (270), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 88/121 (72%), Gaps = 12/121 (9%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEK 216
           NINC+DPL R++L+ AIENEN+ELI +LL +N+ V DALLHAI++E V AVE+LL     
Sbjct: 62  NINCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLN---- 117

Query: 217 IHVHGQPYSWEAV-----DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV 271
              H +P   + V     D+  S FTPDITP+ILAAH NNYEI+K+L+ +G ++P PH+V
Sbjct: 118 ---HKKPSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEV 174

Query: 272 R 272
           R
Sbjct: 175 R 175

Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Has also been shown to be calcium-selective. May also be activated by intracellular calcium store depletion. Acts as a cell-cell contact-dependent endothelial calcium entry channel.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
350412209	1122	PREDICTED: transient receptor potential	0.422	0.102	0.833	4e-57
340727709	1116	PREDICTED: transient receptor potential	0.485	0.118	0.833	4e-57
328697309	1184	PREDICTED: transient receptor potential	0.470	0.108	0.789	2e-54
347963658	1137	AGAP000348-PA [Anopheles gambiae str. PE	0.404	0.096	0.826	6e-53
170068926	1166	transient receptor potential channel [Cu	0.419	0.097	0.770	9e-53
312373233	356	hypothetical protein AND_17706 [Anophele	0.463	0.353	0.741	1e-52
157109943	1198	transient receptor potential channel [Ae	0.419	0.095	0.780	1e-52
383859776	1124	PREDICTED: transient receptor potential	0.485	0.117	0.825	1e-52
156552121	1082	PREDICTED: transient receptor potential	0.422	0.106	0.818	2e-51
242005035	1158	transient receptor potential protein, pu	0.477	0.112	0.734	6e-51

>gi|350412209|ref|XP_003489572.1| PREDICTED: transient receptor potential protein-like [Bombus impatiens]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/132 (83%), Positives = 118/132 (89%)

Query: 141 TIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIK 200
           T+  +L+E KD PE+ NINCVDPLNRS+LIAAIENEN+ELI +LL+  IQVKDALLHAIK
Sbjct: 49  TVKRLLEENKDHPEILNINCVDPLNRSALIAAIENENVELIRLLLDLGIQVKDALLHAIK 108

Query: 201 EEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
           EEYVEAVEILLEWEEKIH  GQPYSWEAVDRSSS FTPDITPLILAAH NNYEILKILLD
Sbjct: 109 EEYVEAVEILLEWEEKIHEPGQPYSWEAVDRSSSNFTPDITPLILAAHKNNYEILKILLD 168

Query: 261 RGATLPMPHDVR 272
           RGATLP PHD R
Sbjct: 169 RGATLPTPHDAR 180

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727709|ref|XP_003402180.1| PREDICTED: transient receptor potential protein-like [Bombus terrestris]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/132 (83%), Positives = 118/132 (89%)

Query: 141 TIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIK 200
           T+  +L+E KD PE+ NINCVDPLNRS+LIAAIENEN+ELI +LL+  IQVKDALLHAIK
Sbjct: 49  TVKRLLEENKDHPEILNINCVDPLNRSALIAAIENENVELIRLLLDLGIQVKDALLHAIK 108

Query: 201 EEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
           EEYVEAVEILLEWEEKIH  GQPYSWEAVDRSSS FTPDITPLILAAH NNYEILKILLD
Sbjct: 109 EEYVEAVEILLEWEEKIHEPGQPYSWEAVDRSSSNFTPDITPLILAAHKNNYEILKILLD 168

Query: 261 RGATLPMPHDVR 272
           RGATLP PHD R
Sbjct: 169 RGATLPTPHDAR 180

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697309|ref|XP_003240303.1| PREDICTED: transient receptor potential protein-like [Acyrthosiphon pisum]

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/128 (78%), Positives = 116/128 (90%)

Query: 145 MLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYV 204
           +L+E + QP++ NI+C DPLNRS+LI AIENEN++LI +LL+  I+VKDALLHAIKEEYV
Sbjct: 54  ILEEHRGQPDILNIDCTDPLNRSALITAIENENMDLIQLLLKSGIKVKDALLHAIKEEYV 113

Query: 205 EAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT 264
           EAVE+LLEWEEKIHV G PYSWEAV+ S+STFTPDITPL LAAHMNNYEILKILLDRGAT
Sbjct: 114 EAVELLLEWEEKIHVVGDPYSWEAVESSASTFTPDITPLTLAAHMNNYEILKILLDRGAT 173

Query: 265 LPMPHDVR 272
           LPMPHDVR
Sbjct: 174 LPMPHDVR 181

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963658|ref|XP_310766.5| AGAP000348-PA [Anopheles gambiae str. PEST] gi|333467095|gb|EAA06236.6| AGAP000348-PA [Anopheles gambiae str. PEST]

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/127 (82%), Positives = 114/127 (89%)

Query: 146 LDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVE 205
           + E K+ PE F+INCVDPLNRS+LIAAIENENIELIN+LL   I+VKDALLHAIKEEYVE
Sbjct: 1   IQENKEHPEEFDINCVDPLNRSALIAAIENENIELINLLLREGIKVKDALLHAIKEEYVE 60

Query: 206 AVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
           AVE LL WEE+ HV G+PYSWEAVDRSSS+FT DITPLILAAH NNYEILKILLDRGATL
Sbjct: 61  AVETLLLWEEENHVPGEPYSWEAVDRSSSSFTADITPLILAAHKNNYEILKILLDRGATL 120

Query: 266 PMPHDVR 272
           PMPHDVR
Sbjct: 121 PMPHDVR 127

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170068926|ref|XP_001869048.1| transient receptor potential channel [Culex quinquefasciatus] gi|167864923|gb|EDS28306.1| transient receptor potential channel [Culex quinquefasciatus]

 Score =  213 bits (541), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 101/131 (77%), Positives = 116/131 (88%)

Query: 142 IFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKE 201
           + +++ E K+ P+ F+INCVDPLNRS+LIAAIENENIELI +LL+  I+V+DALLHAIKE
Sbjct: 6   MMVIITEYKNDPDEFDINCVDPLNRSALIAAIENENIELIRLLLQSGIRVQDALLHAIKE 65

Query: 202 EYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR 261
           EYVEAVE LL WEE+ HV G PYSWEAVDRSSS+FT DITPLILAAH NNYEILKILLDR
Sbjct: 66  EYVEAVETLLLWEEENHVPGDPYSWEAVDRSSSSFTADITPLILAAHKNNYEILKILLDR 125

Query: 262 GATLPMPHDVR 272
           GA+LPMPHDVR
Sbjct: 126 GASLPMPHDVR 136

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373233|gb|EFR21015.1| hypothetical protein AND_17706 [Anopheles darlingi]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 118/143 (82%)

Query: 130 GQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI 189
           G+   ++ +   +     E K+ PE F+INCVDPLNRS+LIAAIENENIELIN+LL   I
Sbjct: 67  GEALSAQCRAGRLRNRAKENKEHPEEFDINCVDPLNRSALIAAIENENIELINLLLREGI 126

Query: 190 QVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHM 249
           +VKDALLHAIKEEYVEAVE LL WEE+ HV G PYSWEAVDRSSS+FT DITPLILAAH 
Sbjct: 127 KVKDALLHAIKEEYVEAVETLLLWEEENHVPGDPYSWEAVDRSSSSFTADITPLILAAHK 186

Query: 250 NNYEILKILLDRGATLPMPHDVR 272
           NNYEILKILLDRGATLPMPHDVR
Sbjct: 187 NNYEILKILLDRGATLPMPHDVR 209

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109943|ref|XP_001650890.1| transient receptor potential channel [Aedes aegypti] gi|108878865|gb|EAT43090.1| AAEL005437-PA [Aedes aegypti]

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/132 (78%), Positives = 115/132 (87%)

Query: 141 TIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIK 200
           T+  ++ E K  P+ F+INCVDPLNRS+LIAAIENENIELI +LL   I+V+DALLHAIK
Sbjct: 72  TVRRIIQENKGDPDEFDINCVDPLNRSALIAAIENENIELIRLLLTEGIKVQDALLHAIK 131

Query: 201 EEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
           EEYVEAVE LL WEE+ H+ GQPYSWEAVDRSSS+FT DITPLILAAH NNYEILKILLD
Sbjct: 132 EEYVEAVETLLLWEEENHIPGQPYSWEAVDRSSSSFTADITPLILAAHKNNYEILKILLD 191

Query: 261 RGATLPMPHDVR 272
           RGATLPMPHDVR
Sbjct: 192 RGATLPMPHDVR 203

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859776|ref|XP_003705368.1| PREDICTED: transient receptor potential protein-like [Megachile rotundata]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/132 (82%), Positives = 118/132 (89%)

Query: 141 TIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIK 200
           T+  +L+E KD PE+ NI+CVDPLNRS+LIAAIENENIELI +LLE  IQVKDALLHAIK
Sbjct: 50  TVKRLLEENKDHPEILNIDCVDPLNRSALIAAIENENIELIKLLLELGIQVKDALLHAIK 109

Query: 201 EEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
           EEYVEAVEILLEWEE+ HV GQPYSWEAVDRSSS FTPDITPL+LAAH NNYEILKILLD
Sbjct: 110 EEYVEAVEILLEWEERTHVAGQPYSWEAVDRSSSNFTPDITPLVLAAHKNNYEILKILLD 169

Query: 261 RGATLPMPHDVR 272
           RGATLP PHD R
Sbjct: 170 RGATLPTPHDAR 181

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552121|ref|XP_001605329.1| PREDICTED: transient receptor potential protein [Nasonia vitripennis]

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/132 (81%), Positives = 117/132 (88%)

Query: 141 TIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIK 200
           T+  +L+E KD PE+ NI+CVDPLNRS+LIAAIENENI+LI +LLE  I VKDALLHAIK
Sbjct: 51  TVRRLLEENKDHPEILNIDCVDPLNRSALIAAIENENIDLILLLLELGISVKDALLHAIK 110

Query: 201 EEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
           EEYVEAVEILLE EEKIH  GQPYSWEAVDRS+S FTPDITPLILAAH NNYEILKILLD
Sbjct: 111 EEYVEAVEILLEHEEKIHQPGQPYSWEAVDRSASNFTPDITPLILAAHKNNYEILKILLD 170

Query: 261 RGATLPMPHDVR 272
           RGATLP PHDVR
Sbjct: 171 RGATLPTPHDVR 182

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005035|ref|XP_002423380.1| transient receptor potential protein, putative [Pediculus humanus corporis] gi|212506424|gb|EEB10642.1| transient receptor potential protein, putative [Pediculus humanus corporis]

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 115/132 (87%)

Query: 141 TIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIK 200
           T+  +L + +D+P+  NINC D L RS+L+ AIENEN++LI  LL+ NI+VKDALLHAIK
Sbjct: 52  TLRSLLIQFEDRPDELNINCTDSLRRSALVTAIENENMDLIKFLLKSNIKVKDALLHAIK 111

Query: 201 EEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
           EE+VEAVE+LLEWEEKIHV G+PYSWEAVD +S+TFTPDITPLILAAH NNYEILKILLD
Sbjct: 112 EEFVEAVEVLLEWEEKIHVDGEPYSWEAVDSASATFTPDITPLILAAHTNNYEILKILLD 171

Query: 261 RGATLPMPHDVR 272
           RGATLP PH+VR
Sbjct: 172 RGATLPRPHNVR 183

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
FB|FBgn0003861	1275	trp "transient receptor potent	0.466	0.099	0.640	2.5e-36
FB|FBgn0005614	1124	trpl "trp-like" [Drosophila me	0.426	0.103	0.543	1.3e-28
FB|FBgn0032593	1128	trpgamma "trpgamma" [Drosophil	0.463	0.111	0.534	1.3e-28
UNIPROTKB|E2QUL7	946	TRPC4 "Uncharacterized protein	0.294	0.084	0.524	4.1e-20
UNIPROTKB|Q96P04	323	TRPC4 "Transient receptor pote	0.441	0.371	0.416	4.4e-20
UNIPROTKB|E1C452	766	TRPC5 "Uncharacterized protein	0.536	0.190	0.370	8e-20
UNIPROTKB|Q3MHB9	460	TRPC4 "TRPC4 protein" [Homo sa	0.441	0.260	0.416	1.8e-19
UNIPROTKB|E1C0Y0	890	TRPC4 "Uncharacterized protein	0.540	0.165	0.379	4.6e-19
UNIPROTKB|F1NP71	975	TRPC4 "Uncharacterized protein	0.540	0.150	0.379	5.3e-19
WB|WBGene00006615	886	trp-2 [Caenorhabditis elegans	0.433	0.133	0.428	5.9e-19

FB|FBgn0003861 trp "transient receptor potential" [Drosophila melanogaster (taxid:7227)]

 Score = 404 (147.3 bits), Expect = 2.5e-36, P = 2.5e-36
 Identities = 82/128 (64%), Positives = 91/128 (71%)

Query:   145 MLDELKDQPEVFNINCVDPLNRSSXXXXXXXXXXXXXXXXXXXXXQVKDALLHAIKEEYV 204
             +L+E +   + FNINC DP+NRS+                     +V DALLHAI EEYV
Sbjct:    51 ILEEYQGTDK-FNINCTDPMNRSALISAIENENFDLMVILLEHNIEVGDALLHAISEEYV 109

Query:   205 EAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT 264
             EAVE LL+WEE  H  GQPYSWEAVDRS STFT DITPLILAAH NNYEILKILLDRGAT
Sbjct:   110 EAVEELLQWEETNHKEGQPYSWEAVDRSKSTFTVDITPLILAAHRNNYEILKILLDRGAT 169

Query:   265 LPMPHDVR 272
             LPMPHDV+
Sbjct:   170 LPMPHDVK 177

GO:0016028 "rhabdomere" evidence=NAS;IDA;TAS

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0005262 "calcium channel activity" evidence=ISS;IMP

GO:0009416 "response to light stimulus" evidence=IMP;TAS

GO:0006816 "calcium ion transport" evidence=ISS;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0008086 "light-activated voltage-gated calcium channel activity" evidence=NAS;IMP

GO:0035997 "rhabdomere microvillus membrane" evidence=IDA

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008377 "light-induced release of internally sequestered calcium ion" evidence=IDA

GO:0015279 "store-operated calcium channel activity" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS

GO:0019722 "calcium-mediated signaling" evidence=TAS

GO:0008087 "light-activated voltage-gated calcium channel complex" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0007602 "phototransduction" evidence=NAS

GO:0070588 "calcium ion transmembrane transport" evidence=IMP

GO:0071454 "cellular response to anoxia" evidence=IGI

GO:0008355 "olfactory learning" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0016027 "inaD signaling complex" evidence=TAS;IPI

GO:0005218 "intracellular ligand-gated calcium channel activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0030845 "phospholipase C-inhibiting G-protein coupled receptor signaling pathway" evidence=IMP

GO:0050962 "detection of light stimulus involved in sensory perception" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007605 "sensory perception of sound" evidence=IMP

FB|FBgn0005614 trpl "trp-like" [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 63/116 (54%), Positives = 80/116 (68%)

Query:   157 NINCVDPLNRSSXXXXXXXXXXXXXXXXXXXXXQVKDALLHAIKEEYVEAVEILLEWEEK 216
             NINC+DPL R +                     + KDALLHAI  E+VEAVE+LLE EE 
Sbjct:    71 NINCMDPLGRRALTLAIDNENLEMVELLVVMGVETKDALLHAINAEFVEAVELLLEHEEL 130

Query:   217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
             I+  G+PYSW+ VD +++ F PDITPL+LAAH NN+EIL+ILLDRGA +P+PHD+R
Sbjct:   131 IYKEGEPYSWQKVDINTAMFAPDITPLMLAAHKNNFEILRILLDRGAAVPVPHDIR 186

GO:0005516 "calmodulin binding" evidence=ISS;NAS;IDA;TAS

GO:0005886 "plasma membrane" evidence=ISS;IDA;TAS

GO:0008086 "light-activated voltage-gated calcium channel activity" evidence=NAS;IMP

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0035997 "rhabdomere microvillus membrane" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0016028 "rhabdomere" evidence=IDA;NAS;TAS

GO:0009416 "response to light stimulus" evidence=TAS

GO:0019722 "calcium-mediated signaling" evidence=IMP;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005262 "calcium channel activity" evidence=IGI;ISS;IDA

GO:0006816 "calcium ion transport" evidence=ISS;IDA

GO:0070588 "calcium ion transmembrane transport" evidence=IGI

GO:0071454 "cellular response to anoxia" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0016027 "inaD signaling complex" evidence=IPI

GO:0005261 "cation channel activity" evidence=TAS

GO:0015279 "store-operated calcium channel activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0007589 "body fluid secretion" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

FB|FBgn0032593 trpgamma "trpgamma" [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 69/129 (53%), Positives = 83/129 (64%)

Query:   145 MLDELKDQPEVFNINCVDPLNRSSXXXXXXXXXXXXXXXXXXXXXQVKDALLHAIKEEYV 204
             ML + +D  E  N+NCVDPL R++                       KDALLH+I EE+V
Sbjct:    39 MLQKAQDT-EYINVNCVDPLGRTALLMAIDNENLEMVELLINYNVDTKDALLHSISEEFV 97

Query:   205 EAVEILLEWEE-KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
             EAVE+LL+ E    H  G  +SWE+    +STFTPDITPLILAAH +NYEI+KILLDRGA
Sbjct:    98 EAVEVLLDHENVTFHSEGN-HSWESASEDTSTFTPDITPLILAAHRDNYEIIKILLDRGA 156

Query:   264 TLPMPHDVR 272
              LPMPHDVR
Sbjct:   157 VLPMPHDVR 165

GO:0005262 "calcium channel activity" evidence=ISS

GO:0050908 "detection of light stimulus involved in visual perception" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0016028 "rhabdomere" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005261 "cation channel activity" evidence=IDA;NAS

GO:0006812 "cation transport" evidence=NAS

GO:0009416 "response to light stimulus" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

UNIPROTKB|E2QUL7 TRPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
 Identities = 43/82 (52%), Positives = 58/82 (70%)

Query:   191 VKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN 250
             V DALLHAI++E V AVE+LL  ++       P     +D+  S FTPDITP+ILAAH N
Sbjct:    65 VGDALLHAIRKEVVGAVELLLNHKKPSGEKQVPPI--LLDKQFSEFTPDITPIILAAHTN 122

Query:   251 NYEILKILLDRGATLPMPHDVR 272
             NYEI+K+L+ +G ++P PH+VR
Sbjct:   123 NYEIIKLLVQKGVSVPRPHEVR 144

GO:0016021 "integral to membrane" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

UNIPROTKB|Q96P04 TRPC4 "Transient receptor potential cation channel, subfamily C, member 4, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 52/125 (41%), Positives = 74/125 (59%)

Query:   151 DQPEVF---NINCVDPLNRSSXXXXXXXXXXXXXXXXXXXXXQVKDALLHAIKEEYVEAV 207
             ++ E++   NINC+DPL R++                      V DALLHAI++E V AV
Sbjct:    53 EEAEIYFKININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAV 112

Query:   208 EILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPM 267
             E+LL  ++       P     +D+  S FTPDITP+ILAAH NNYEI+K+L+ +G ++P 
Sbjct:   113 ELLLNHKKPSGEKQVPPI--LLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPR 170

Query:   268 PHDVR 272
             PH+VR
Sbjct:   171 PHEVR 175

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C452 TRPC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
 Identities = 57/154 (37%), Positives = 82/154 (53%)

Query:   123 EEKIHVHGQPYVSE-NKGRTIFMMLDELKDQPEVF---NINCVDPLNRSSXXXXXXXXXX 178
             E ++ V  + Y+S   KG   +  +     + E++   NINC+DPL RS+          
Sbjct:    26 EAELSVEEKAYLSAVEKGD--YASVKHALQEAEIYYNININCMDPLGRSALLIAIENENL 83

Query:   179 XXXXXXXXXXXQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTP 238
                         V DALL+AI++E V AVE+LL + +       P     +D   S FTP
Sbjct:    84 EIMELLLSHCVYVGDALLYAIRKEVVGAVELLLNYRKPSGEKQVPTLM--MDTQFSEFTP 141

Query:   239 DITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
             DITP++LAAH NNYEI+K+L+ R  T+P PH +R
Sbjct:   142 DITPIMLAAHTNNYEIIKLLVQRRVTIPRPHQIR 175

GO:0005262 "calcium channel activity" evidence=IEA

GO:0034704 "calcium channel complex" evidence=IEA

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

UNIPROTKB|Q3MHB9 TRPC4 "TRPC4 protein" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 52/125 (41%), Positives = 74/125 (59%)

Query:   151 DQPEVF---NINCVDPLNRSSXXXXXXXXXXXXXXXXXXXXXQVKDALLHAIKEEYVEAV 207
             ++ E++   NINC+DPL R++                      V DALLHAI++E V AV
Sbjct:    53 EEAEIYFKININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAV 112

Query:   208 EILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPM 267
             E+LL  ++       P     +D+  S FTPDITP+ILAAH NNYEI+K+L+ +G ++P 
Sbjct:   113 ELLLNHKKPSGEKQVPPI--LLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPR 170

Query:   268 PHDVR 272
             PH+VR
Sbjct:   171 PHEVR 175

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C0Y0 TRPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 4.6e-19, P = 4.6e-19
 Identities = 58/153 (37%), Positives = 85/153 (55%)

Query:   120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSXXXXXXXXXXX 179
             L   EK +++    V +    T+   L+E +   ++ NINC+DPL R++           
Sbjct:    29 LSHSEKAYLNA---VEKGDYATVKKALEEAEIYFKI-NINCIDPLGRTALLIAIENENLE 84

Query:   180 XXXXXXXXXXQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD 239
                        V DALLHAI++E V AVE+LL  ++       P     +D+  S FTPD
Sbjct:    85 LIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKKPSGEKQVPPI--LLDKQFSEFTPD 142

Query:   240 ITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
             ITP+ILAAH NNYEI+K+L+ +G ++P PH+VR
Sbjct:   143 ITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVR 175

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NP71 TRPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 5.3e-19, P = 5.3e-19
 Identities = 58/153 (37%), Positives = 85/153 (55%)

Query:   120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSXXXXXXXXXXX 179
             L   EK +++    V +    T+   L+E +   ++ NINC+DPL R++           
Sbjct:    30 LSHSEKAYLNA---VEKGDYATVKKALEEAEIYFKI-NINCIDPLGRTALLIAIENENLE 85

Query:   180 XXXXXXXXXXQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD 239
                        V DALLHAI++E V AVE+LL  ++       P     +D+  S FTPD
Sbjct:    86 LIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKKPSGEKQVPPI--LLDKQFSEFTPD 143

Query:   240 ITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
             ITP+ILAAH NNYEI+K+L+ +G ++P PH+VR
Sbjct:   144 ITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVR 176

GO:0005901 "caveola" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0015279 "store-operated calcium channel activity" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0034704 "calcium channel complex" evidence=IEA

GO:0045296 "cadherin binding" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0070679 "inositol 1,4,5 trisphosphate binding" evidence=IEA

WB|WBGene00006615 trp-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 239 (89.2 bits), Expect = 5.9e-19, P = 5.9e-19
 Identities = 51/119 (42%), Positives = 69/119 (57%)

Query:   154 EVFNINCVDPLNRSSXXXXXXXXXXXXXXXXXXXXXQVKDALLHAIKEEYVEAVEILLEW 213
             E FNINC+DPL R++                     +  DA+L+AI EE VEAVEI++E 
Sbjct:    59 ETFNINCLDPLGRNALLIAIENENIEMIELLLDHNIETGDAILYAIGEENVEAVEIIVEH 118

Query:   214 EEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
              EK+           +   S+ FTPDITP++LAAH +NYE +K+ LD+  T+P PHDVR
Sbjct:   119 LEKMDKFDSERQGVEITEHSA-FTPDITPIVLAAHKDNYECIKLFLDKKGTVPHPHDVR 176

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O62852	TRPC5_RABIT	No assigned EC number	0.5086	0.4191	0.1170	yes	N/A
Q9UL62	TRPC5_HUMAN	No assigned EC number	0.5086	0.4191	0.1171	yes	N/A
Q9QX29	TRPC5_MOUSE	No assigned EC number	0.5086	0.4191	0.1169	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	272
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	6e-37
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-28
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-04

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score =  138 bits (349), Expect = 6e-37
 Identities = 70/162 (43%), Positives = 90/162 (55%), Gaps = 11/162 (6%)

Query: 108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRS 167
              + V A E  L  EEK  +   P        +++  L+E    P+  NINC D L RS
Sbjct: 2   GPLDIVPAEESPLSDEEKAFL---PAAERGDLASVYRDLEE----PKKLNINCPDRLGRS 54

Query: 168 SLI-AAIENENIELINILLEYN--IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 224
           +L  AAIENEN+EL  +LL  +    V D LLHAI  EYV+AVE +L           P 
Sbjct: 55  ALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPL 114

Query: 225 SWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP 266
              A D+ +S FTP IT L LAAH  NYEI+K+LL+RGA++P
Sbjct: 115 -ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP 155

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score =  114 bits (287), Expect = 1e-28
 Identities = 60/179 (33%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 19  RQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSL 78
           R    +    E  L+ +EK FL  AERGD A+V + L+E    P+  NINC D L RS+L
Sbjct: 1   RGPLDIVPAEESPLSDEEKAFLPAAERGDLASVYRDLEE----PKKLNINCPDRLGRSAL 56

Query: 79  I-AAIENENIELINILLEYN--IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVS 135
             AAIENEN+EL  +LL  +    V D LLHAI  EYV+AVE +L           P   
Sbjct: 57  FVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPL-- 114

Query: 136 ENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE--YNIQVK 192
                   +  D+   +              ++L  A   +N E++ +LLE   ++  +
Sbjct: 115 -------ELANDQYTSEFTP---------GITALHLAAHRQNYEIVKLLLERGASVPAR 157

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 20/100 (20%)

Query: 169 LIAAIENENIELINILLEYNIQV-----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
           L  A +N N+EL+ +LLE    V       AL  A +   +E V++LLE    ++     
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN----- 55

Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                     +      T L LAA   N EI+K+LL+ GA
Sbjct: 56  ----------AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 22/112 (19%)

Query: 159 NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 211
           N  D   R+ L  A  N ++E++ +LLE   ++  KD      L  A K  ++E V++LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 212 EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           E        G      A D+         TPL LAA   N +++K+LL  GA
Sbjct: 61  E-------KG--ADVNARDKD------GNTPLHLAARNGNLDVVKLLLKHGA 97

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 37/119 (31%)

Query: 78  LIAAIENENIELINILLEYNIQV-----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQP 132
           L  A +N N+EL+ +LLE    V       AL  A +   +E V++LLE           
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHG--------- 51

Query: 133 YVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV 191
                                   ++N  D    ++L  A  N N+E++ +LLE+   +
Sbjct: 52  -----------------------ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 46/158 (29%)

Query: 68  NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 120
           N  D   R+ L  A  N ++E++ +LLE   ++  KD      L  A K  ++E V++LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL 180
           E        G                          ++N  D    + L  A  N N+++
Sbjct: 61  E-------KGA-------------------------DVNARDKDGNTPLHLAARNGNLDV 88

Query: 181 INILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 211
           + +LL++  ++  +D      L  A K  ++E V++LL
Sbjct: 89  VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 22/110 (20%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
           ++N  D   R+ L  A +N ++E++ +LLE   ++  +D      L  A +   ++ V++
Sbjct: 32  DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKL 91

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILL 259
           LL+    +          A D+         TPL LAA   + E++K+LL
Sbjct: 92  LLKHGADV---------NARDKD------GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 39  FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI 98
             L A+ G+   V+ +L++  D      +N  D    ++L  A  N N+E++ +LLE+  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD------VNLGD--TDTALHLAARNGNLEIVKLLLEHGA 52

Query: 99  QVKD-------ALLHAIKEEYVEAVEILLEWEEKIHV 128
            V         AL  A +   +E V++LLE    I++
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 41/123 (33%)

Query: 104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDP 163
           L  A K   +E V++LLE    +          N G T                      
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV----------NLGDT---------------------- 28

Query: 164 LNRSSLIAAIENENIELINILLEYNIQVKD-------ALLHAIKEEYVEAVEILLEWEEK 216
              ++L  A  N N+E++ +LLE+   V         AL  A +   +E V++LLE    
Sbjct: 29  --DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Query: 217 IHV 219
           I++
Sbjct: 87  INL 89

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 45/154 (29%)

Query: 39  FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-- 96
             L A  G    V+ +L+   D      +N  D   R+ L  A +N ++E++ +LLE   
Sbjct: 11  LHLAASNGHLEVVKLLLENGAD------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 97  NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKD 151
           ++  +D      L  A +   ++ V++LL+       HG                     
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLK-------HG--------------------- 96

Query: 152 QPEVFNINCVDPLNRSSLIAAIENENIELINILL 185
                ++N  D   R+ L  A +N ++E++ +LL
Sbjct: 97  ----ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 241 TPLILAAHMNNYEILKILLDRGA 263
           TPL LAA   + E++K+LL+ GA
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	99.98
KOG4412|consensus	226		99.98
PHA02876	682	ankyrin repeat protein; Provisional	99.98
PHA02874	434	ankyrin repeat protein; Provisional	99.98
PHA02876	682	ankyrin repeat protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG0509|consensus	600		99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG0510|consensus	929		99.97
KOG4412|consensus	226		99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0510|consensus	929		99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG0508|consensus	615		99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG4177|consensus	1143		99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG4177|consensus	1143		99.94
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0508|consensus	615		99.93
KOG0509|consensus	600		99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0502|consensus	296		99.88
PHA02792	631	ankyrin-like protein; Provisional	99.87
KOG0505|consensus	527		99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG0507|consensus	854		99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0507|consensus	854		99.82
PHA02741	169	hypothetical protein; Provisional	99.82
KOG0502|consensus	296		99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.82
KOG3676|consensus	782		99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.8
KOG0512|consensus	228		99.79
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG0514|consensus	452		99.77
PHA02741	169	hypothetical protein; Provisional	99.77
KOG4369|consensus	2131		99.77
KOG4369|consensus	2131		99.76
KOG0505|consensus	527		99.75
PHA02736	154	Viral ankyrin protein; Provisional	99.75
KOG0514|consensus	452		99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG0195|consensus	448		99.66
KOG0195|consensus	448		99.64
KOG3676|consensus	782		99.62
KOG0512|consensus	228		99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.59
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.58
KOG1710|consensus	396		99.52
KOG4214|consensus	117		99.49
KOG4214|consensus	117		99.47
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.41
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.37
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.32
KOG0515|consensus	752		99.31
KOG1710|consensus	396		99.29
KOG3609|consensus	822		99.28
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.28
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.25
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.12
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.08
KOG0515|consensus	752		99.07
KOG3609|consensus	822		99.06
PF13606	30	Ank_3: Ankyrin repeat	99.04
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.99
PF13606	30	Ank_3: Ankyrin repeat	98.81
KOG0783|consensus	1267		98.73
KOG0818|consensus	669		98.67
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.59
KOG0783|consensus	1267		98.55
KOG0506|consensus	622		98.51
KOG0511|consensus	516		98.49
KOG0506|consensus	622		98.47
KOG0782|consensus	1004		98.44
KOG0705|consensus	749		98.39
KOG0705|consensus	749		98.37
KOG0818|consensus	669		98.26
KOG0782|consensus	1004		98.24
KOG0511|consensus	516		98.12
KOG0522|consensus	560		97.94
KOG0522|consensus	560		97.86
KOG0521|consensus	785		97.74
KOG2384|consensus	223		97.67
KOG0521|consensus	785		97.49
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.46
KOG2384|consensus	223		97.45
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.32
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.03
KOG0520|consensus	975		96.84
KOG2505|consensus	591		96.83
KOG2505|consensus	591		96.58
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.52
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.35
KOG0520|consensus	975		96.07
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.8
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.0
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.36

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=246.26  Aligned_cols=196  Identities=17%  Similarity=0.147  Sum_probs=149.1

Q ss_pred             CCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-----hHHHHHHHcCcHHHHHHHH
Q psy11714         46 GDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-----DALLHAIKEEYVEAVEILL  120 (272)
Q Consensus        46 g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----t~l~~A~~~~~~~~~~~Ll  120 (272)
                      ++.++++.|++.+      +  +..|..|.||||+|+..|+.+++++|+++|++++     ||||+|+..++.+++++|+
T Consensus        10 ~~~~~~~~Lis~~------a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791         10 KSKQLKSFLSSKD------A--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             CHHHHHHHHHhCC------C--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            4556666666654      3  3456667777777777777777777777766552     6777777777777777777


Q ss_pred             ccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCc-
Q psy11714        121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLN-RSSLIAAIENENIELINILLEYNIQV-  191 (272)
Q Consensus       121 ~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~-~t~L~~a~~~g~~~~~~~Ll~~g~~~-  191 (272)
                      ++|++++      .++..|.||||+|+..+...       .+++++.++..| .||||+|+..|+.+++++|++++.+. 
T Consensus        82 ~~Gadvn------~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~  155 (284)
T PHA02791         82 FSGMDDS------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF  155 (284)
T ss_pred             HCCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc
Confidence            7776666      45666777777776654432       246677777777 58999999999999999999987432 


Q ss_pred             -----hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCC
Q psy11714        192 -----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITP-LILAAHMNNYEILKILLDRGATL  265 (272)
Q Consensus       192 -----~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~-l~~A~~~~~~~iv~~Ll~~ga~~  265 (272)
                           .||||+|+..|+.+++++|+++|++++               .++..|.|| ||+|+..|+.++|++|+++||++
T Consensus       156 d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n---------------~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        156 DLAILLSCIHITIKNGHVDMMILLLDYMTSTN---------------TNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             ccccCccHHHHHHHcCCHHHHHHHHHCCCCCC---------------cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence                 589999999999999999999999998               677778876 99999999999999999999999


Q ss_pred             CCCCC
Q psy11714        266 PMPHD  270 (272)
Q Consensus       266 ~~~~~  270 (272)
                      |.+|.
T Consensus       221 n~~~~  225 (284)
T PHA02791        221 YSVNL  225 (284)
T ss_pred             ccCcc
Confidence            98874

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4e-34  Score=252.03  Aligned_cols=207  Identities=21%  Similarity=0.189  Sum_probs=187.5

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hhHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l~~A~  108 (272)
                      ...|+.|+..|+.+++++|++.|      +++|..+..|.||||+|+..|+.+++++|+++|+++       .||||.|+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g------~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~   76 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIG------INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAV   76 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCC------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHH
Confidence            45799999999999999999997      999999999999999999999999999999999876       37999999


Q ss_pred             HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC-------CccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        109 KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ-------PEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-------~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      ..|+.+++++|+++|+.++.     ..+..|.||||+|+..+..       ..|++++..+..|.||||+|+..|+.+++
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v  151 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFADD-----VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI  151 (413)
T ss_pred             HCCCHHHHHHHHHcCCcccc-----cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999876642     3456799999999987653       23789999999999999999999999999


Q ss_pred             HHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCC-CcHHHHHHHcCCHH
Q psy11714        182 NILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD-ITPLILAAHMNNYE  253 (272)
Q Consensus       182 ~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~A~~~~~~~  253 (272)
                      ++|+++|+++       .||||+|+..|+.+++++|+++|++++               ..+..| .||+|+|+..++.+
T Consensus       152 ~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n---------------~~~~~~~~t~l~~A~~~~~~~  216 (413)
T PHA02875        152 ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID---------------YFGKNGCVAALCYAIENNKID  216 (413)
T ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC---------------cCCCCCCchHHHHHHHcCCHH
Confidence            9999999987       599999999999999999999999998               455555 58999999999999


Q ss_pred             HHHHHHHCCCCCCCC
Q psy11714        254 ILKILLDRGATLPMP  268 (272)
Q Consensus       254 iv~~Ll~~ga~~~~~  268 (272)
                      ++++|+++|||++..
T Consensus       217 iv~~Ll~~gad~n~~  231 (413)
T PHA02875        217 IVRLFIKRGADCNIM  231 (413)
T ss_pred             HHHHHHHCCcCcchH
Confidence            999999999999865

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.9e-34  Score=256.11  Aligned_cols=213  Identities=27%  Similarity=0.315  Sum_probs=193.3

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHH-----HHHcCCHHHHHHHHHCCCCh-------
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIA-----AIENENIELINILLEYNIQV-------  100 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~-----A~~~~~~~~v~~Ll~~g~~~-------  100 (272)
                      ....++||.|+..|+.++++.|++.|      ++++..+..+.||||+     |+..++.+++++|+++|+++       
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~~g------~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g  106 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLDNG------ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG  106 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHHcC------CCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCC
Confidence            34567799999999999999999997      9999999999999999     99999999999999999997       


Q ss_pred             hhHHHHHH--HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcC--CC-------CccccccCCCCCCCCHH
Q psy11714        101 KDALLHAI--KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELK--DQ-------PEVFNINCVDPLNRSSL  169 (272)
Q Consensus       101 ~t~l~~A~--~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~--~~-------~~~~~~~~~d~~~~t~L  169 (272)
                      .||||+|+  ..++.+++++|+++|++++      ..+..|.||||.|+..+  ..       ..+++++.++..|.|||
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL  180 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANVN------IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPL  180 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCCC------ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHH
Confidence            37999999  9999999999999999988      67889999999999877  32       22788999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCc-------------hhHHHHHHHcCC--HHHHHHHHhcCccCCCCCCcchhhhhhcCCC
Q psy11714        170 IAAIENENIELINILLEYNIQV-------------KDALLHAIKEEY--VEAVEILLEWEEKIHVHGQPYSWEAVDRSSS  234 (272)
Q Consensus       170 ~~a~~~g~~~~~~~Ll~~g~~~-------------~t~l~~A~~~~~--~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~  234 (272)
                      |+|+..|+.+++++|+++|+++             .||||+|+..++  .+++++|+++|++++               .
T Consensus       181 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din---------------~  245 (480)
T PHA03100        181 HIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN---------------I  245 (480)
T ss_pred             HHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC---------------C
Confidence            9999999999999999999887             489999999999  999999999999998               6


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        235 TFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       235 ~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      +|..|.||||+|+..++.+++++|+++|||++..+..+
T Consensus       246 ~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g  283 (480)
T PHA03100        246 KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG  283 (480)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            77888999999999999999999999999998887653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-33  Score=247.23  Aligned_cols=222  Identities=16%  Similarity=0.199  Sum_probs=116.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEA  115 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~  115 (272)
                      .++|+.|+..|+.+++++|++.|      +++|..+..|.||||+|+..|+.+++++|+++|+++..   .+....+.++
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~G------a~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~---~~~~~~~~~~  106 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHG------ADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI---LPIPCIEKDM  106 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc---chhccCCHHH
Confidence            34455555555555555555554      55555555555555555555555555555554433200   0000000111


Q ss_pred             HHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy11714        116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENENIELINILLEYN  188 (272)
Q Consensus       116 ~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g  188 (272)
                      +++|+++|++++      .++..|.||||+|+..+...       .+++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       107 i~~ll~~g~d~n------~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  180 (434)
T PHA02874        107 IKTILDCGIDVN------IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG  180 (434)
T ss_pred             HHHHHHCcCCCC------CCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC
Confidence            111111111111      23344555555555543321       14455555555555555555555555555555555


Q ss_pred             CCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCC----CCCcchhhhh------------hcCCCCCCCCCcHHHH
Q psy11714        189 IQV-------KDALLHAIKEEYVEAVEILLEWEEKIHV----HGQPYSWEAV------------DRSSSTFTPDITPLIL  245 (272)
Q Consensus       189 ~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~----~~~~~~~~~~------------~~~~~~~~~g~t~l~~  245 (272)
                      +++       .||||+|+..|+.+++++|+++|++++.    +.+|++.+..            ...+.++..|.||||+
T Consensus       181 ~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~  260 (434)
T PHA02874        181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHH  260 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            544       3555555555555555555555555432    2233333321            1123678899999999


Q ss_pred             HHHcC-CHHHHHHHHHCCCCCCCCCCCC
Q psy11714        246 AAHMN-NYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       246 A~~~~-~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      |+..+ +.+++++|+++||+++..+..+
T Consensus       261 A~~~~~~~~iv~~Ll~~gad~n~~d~~g  288 (434)
T PHA02874        261 AINPPCDIDIIDILLYHKADISIKDNKG  288 (434)
T ss_pred             HHhcCCcHHHHHHHHHCcCCCCCCCCCC
Confidence            99876 7899999999999999988653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-32  Score=244.29  Aligned_cols=212  Identities=17%  Similarity=0.143  Sum_probs=168.6

Q ss_pred             ChhhhHHHHHHHcC---CHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCChh-------
Q psy11714         33 TPQEKRFLLVAERG---DCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENE-NIELINILLEYNIQVK-------  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~-------  101 (272)
                      ..+.++||.|+..|   +.++++.|++.|      +++|.++..|.||||+|+..+ +.+++++|+++|++++       
T Consensus        45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G------adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~  118 (471)
T PHA03095         45 EYGKTPLHLYLHYSSEKVKDIVRLLLEAG------ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGR  118 (471)
T ss_pred             CCCCCHHHHHHHhcCCChHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCC
Confidence            34567899999988   999999999997      999999999999999999999 5999999999999884       


Q ss_pred             hHHHHHH--HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC---------CccccccCCCCCCCCHHH
Q psy11714        102 DALLHAI--KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ---------PEVFNINCVDPLNRSSLI  170 (272)
Q Consensus       102 t~l~~A~--~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~---------~~~~~~~~~d~~~~t~L~  170 (272)
                      ||||+|+  ..++.+++++|+++|++++      ..+..|.||||+++.....         ..+++++..|..|.||||
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad~~------~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh  192 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGADVN------ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH  192 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCCCC------ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            7999998  4567899999999999988      5677788888887765422         125666666777888888


Q ss_pred             HHHHc--CCHHHHHHHHhCCCCc-------hhHHHHHHHcCCH--HHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCC
Q psy11714        171 AAIEN--ENIELINILLEYNIQV-------KDALLHAIKEEYV--EAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD  239 (272)
Q Consensus       171 ~a~~~--g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~--~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g  239 (272)
                      +++..  +..++++.|+++|+++       +||||+|+..++.  .+++.|+++|++++               .+|..|
T Consensus       193 ~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din---------------~~d~~g  257 (471)
T PHA03095        193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN---------------ARNRYG  257 (471)
T ss_pred             HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC---------------CcCCCC
Confidence            77764  5677778888887777       4788887777753  46677777777777               667778


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        240 ITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       240 ~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      .||||+|+..|+.+++++|+++||+++.++..
T Consensus       258 ~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~  289 (471)
T PHA03095        258 QTPLHYAAVFNNPRACRRLIALGADINAVSSD  289 (471)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence            88888888888888888888888888777643

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-32  Score=244.85  Aligned_cols=209  Identities=22%  Similarity=0.239  Sum_probs=177.1

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-----hhHHHHHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-----KDALLHAIK  109 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~t~l~~A~~  109 (272)
                      ..++||.|+..|+.++++.|++.|      +++|.+|..|.||||+|+..|+.++++.|++.+.+.     .+|++.|+.
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~g------advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~  110 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRG------HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFN  110 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHH
Confidence            345799999999999999999997      999999999999999999999999999999876544     358888887


Q ss_pred             cCcHHHHHHHH---------------------------------ccccccccCCCCccccCC-cccHHHHHHhcCCCC--
Q psy11714        110 EEYVEAVEILL---------------------------------EWEEKIHVHGQPYVSENK-GRTIFMMLDELKDQP--  153 (272)
Q Consensus       110 ~~~~~~~~~Ll---------------------------------~~g~~~~~~~~~~~~~~~-~~t~l~~~~~~~~~~--  153 (272)
                      .++.+++++|+                                 ++|++++      ..+.. |.||||+|+..+...  
T Consensus       111 ~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin------~~~~~~g~tpLh~A~~~~~~~iv  184 (477)
T PHA02878        111 NRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADIN------MKDRHKGNTALHYATENKDQRLT  184 (477)
T ss_pred             cCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCC------ccCCCCCCCHHHHHHhCCCHHHH
Confidence            77766555554                                 4455554      45555 999999999876532  


Q ss_pred             -----ccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHc-CCHHHHHHHHhcCccCCCC
Q psy11714        154 -----EVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKE-EYVEAVEILLEWEEKIHVH  220 (272)
Q Consensus       154 -----~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~  220 (272)
                           .+++++..|..|.||||+|+..|+.+++++|++.|+++       .||||+|+.. ++.+++++|+++|++++  
T Consensus       185 ~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn--  262 (477)
T PHA02878        185 ELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN--  262 (477)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC--
Confidence                 37899999999999999999999999999999999988       5999999975 68999999999999998  


Q ss_pred             CCcchhhhhhcCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        221 GQPYSWEAVDRSSSTFT-PDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       221 ~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                                   .++. .|.||||+|  .++.+++++|+++|||+|..+..+
T Consensus       263 -------------~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g  300 (477)
T PHA02878        263 -------------AKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYK  300 (477)
T ss_pred             -------------ccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCC
Confidence                         4443 799999999  467899999999999999988653

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=245.93  Aligned_cols=209  Identities=22%  Similarity=0.244  Sum_probs=193.2

Q ss_pred             ChhhhHHHH-----HHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCChh----
Q psy11714         33 TPQEKRFLL-----VAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAI--ENENIELINILLEYNIQVK----  101 (272)
Q Consensus        33 ~~~~~~l~~-----a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~----  101 (272)
                      ....++|+.     |+..|+.++++.|++.|      ++++..|..|.||||+|+  ..|+.+++++|+++|++++    
T Consensus        66 ~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g------a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~  139 (480)
T PHA03100         66 KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG------ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS  139 (480)
T ss_pred             ccCcCHHHHHHHHHHHhhchHHHHHHHHHCC------CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCC
Confidence            334577999     99999999999999997      899999999999999999  9999999999999999983    


Q ss_pred             ---hHHHHHHHcC--cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCC----
Q psy11714        102 ---DALLHAIKEE--YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLN----  165 (272)
Q Consensus       102 ---t~l~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~----  165 (272)
                         ||||+|+..+  +.+++++|+++|++++      .++..|.||||+|+..+...       .|++++..+..|    
T Consensus       140 ~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din------~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~  213 (480)
T PHA03100        140 DGENLLHLYLESNKIDLKILKLLIDKGVDIN------AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFT  213 (480)
T ss_pred             CCCcHHHHHHHcCCChHHHHHHHHHCCCCcc------cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHH
Confidence               7999999999  9999999999999998      67789999999999986532       268888888888    


Q ss_pred             --CCHHHHHHHcCC--HHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCC
Q psy11714        166 --RSSLIAAIENEN--IELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSS  234 (272)
Q Consensus       166 --~t~L~~a~~~g~--~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~  234 (272)
                        .||||+|+..|+  .+++++|+++|+++       .||||+|+..++.+++++|+++|++++               .
T Consensus       214 ~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n---------------~  278 (480)
T PHA03100        214 IFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN---------------L  278 (480)
T ss_pred             HHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------c
Confidence              899999999999  99999999999998       599999999999999999999999999               7


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy11714        235 TFTPDITPLILAAHMNNYEILKILLDRGATLPMP  268 (272)
Q Consensus       235 ~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~  268 (272)
                      ++..|.||+++|+..++.+++++|+++|++++..
T Consensus       279 ~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i  312 (480)
T PHA03100        279 VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI  312 (480)
T ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHH
Confidence            8899999999999999999999999999998753

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-32  Score=225.14  Aligned_cols=198  Identities=19%  Similarity=0.227  Sum_probs=168.7

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l  104 (272)
                      ...+.++||+|+..|+.++++.|++.|      ++++..+  |.||||+|+..|+.+++++|+++|++++       |||
T Consensus        27 D~~G~TpLh~Aa~~g~~eiv~~Ll~~g------a~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpL   98 (284)
T PHA02791         27 DVHGHSALYYAIADNNVRLVCTLLNAG------ALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTAL   98 (284)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCc------CCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            455778899999999999999999997      7777764  6899999999999999999999999883       899


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCc-ccHHHHHHhcCCCCcc-----ccccCCC-CCCCCHHHHHHHcCC
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKG-RTIFMMLDELKDQPEV-----FNINCVD-PLNRSSLIAAIENEN  177 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~-~t~l~~~~~~~~~~~~-----~~~~~~d-~~~~t~L~~a~~~g~  177 (272)
                      |+|+..++.+++++|+++|++++      .++..| .||||+|+..+.....     ...+..| ..|.||||+|+..|+
T Consensus        99 h~Aa~~g~~eivk~Ll~~gadin------~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~  172 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKKNWRLM------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGH  172 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcC------ccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCC
Confidence            99999999999999999999988      566666 5899999987654321     1122233 358999999999999


Q ss_pred             HHHHHHHHhCCCCc-------hh-HHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHc
Q psy11714        178 IELINILLEYNIQV-------KD-ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHM  249 (272)
Q Consensus       178 ~~~~~~Ll~~g~~~-------~t-~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  249 (272)
                      .+++++|+++|+++       .| |||+|+..|+.+++++|+++|++++               .+|.+ .++|      
T Consensus       173 ~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in---------------~~~~~-~~~l------  230 (284)
T PHA02791        173 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIY---------------SVNLE-NVLL------  230 (284)
T ss_pred             HHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc---------------cCccc-CccC------
Confidence            99999999999987       24 4999999999999999999999999               66663 4555      


Q ss_pred             CCHHHHHHHHHCCCCC
Q psy11714        250 NNYEILKILLDRGATL  265 (272)
Q Consensus       250 ~~~~iv~~Ll~~ga~~  265 (272)
                      ++.|++++||++.++.
T Consensus       231 ~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        231 DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             CCHHHHHHHHHhhhhh
Confidence            7889999999998875

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.5e-32  Score=238.06  Aligned_cols=170  Identities=17%  Similarity=0.190  Sum_probs=107.8

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCChh--------hH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENE--NIELINILLEYNIQVK--------DA  103 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~--------t~  103 (272)
                      .+.++||+|+..|+.++++.|++.|      +++|.+|..|.||||+|+..+  ..+++++|+++|++++        ||
T Consensus        71 ~G~TpLh~Aa~~g~~eiv~lLL~~G------Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         71 DGNYPLHIASKINNNRIVAMLLTHG------ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCc------CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence            3455566666666666666666665      666666666666666665543  2556666666666553        35


Q ss_pred             HHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC---------CccccccCCCCCCCCHHHHHHH
Q psy11714        104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ---------PEVFNINCVDPLNRSSLIAAIE  174 (272)
Q Consensus       104 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~---------~~~~~~~~~d~~~~t~L~~a~~  174 (272)
                      |+ |+..++.+++++|+++|++++      .++..|.||||+++.....         ..|++++.+|..|.||||+|+.
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad~~------~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~  217 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFEAR------IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCS  217 (446)
T ss_pred             HH-HHHCCChHHHHHHHhcccccc------ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            54 334455566666666665555      4566777777776654332         2267777777778888888777


Q ss_pred             cC--CHHHHHHHHhCCCCc-------hhHHHHHHHcCC-HHHHHHHHhcCccC
Q psy11714        175 NE--NIELINILLEYNIQV-------KDALLHAIKEEY-VEAVEILLEWEEKI  217 (272)
Q Consensus       175 ~g--~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~-~~~~~~Ll~~g~~~  217 (272)
                      .|  +.+++++|+. |+++       .||||+|+..++ .+++++|+++|+++
T Consensus       218 ~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        218 KTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             cCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            65  6777777774 6666       478887777766 46777777776543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.3e-31  Score=234.94  Aligned_cols=238  Identities=15%  Similarity=0.186  Sum_probs=188.2

Q ss_pred             CCCCchHHHHhhhhhccccccccc-cchhhh-ccChhhhHHHHHH--HcCCHHHHHHHHHccCCCCCCCCcccCCCCCCc
Q psy11714          1 MKQGDSKEELLGSVHNIARQDYCV-DAPVEV-ALTPQEKRFLLVA--ERGDCATVRKMLDELKDQPEVFNINCVDPLNRS   76 (272)
Q Consensus         1 ~~~~~s~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t   76 (272)
                      |.+.+|.+++++.-..+....... ...... ....+...||.++  ..++.++++.|++.|      +++|.+|..|.|
T Consensus         1 ~~~i~~~~~~~sl~~~~~~~n~~~~~~~l~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~G------advn~~d~~G~T   74 (446)
T PHA02946          1 MDNIMSAEYYLSLYAKYNSKNLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRG------YSPNETDDDGNY   74 (446)
T ss_pred             CchHHHHHHHHHHHHHHccCcHHHHHHHHhccCCCCCChHHHHHHHhcCCCHHHHHHHHHCc------CCCCccCCCCCC
Confidence            456677777777643333222111 101111 1122345677665  345788999999998      999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcC--cHHHHHHHHccccccccCCCCccccCCcccHHHHHH
Q psy11714         77 SLIAAIENENIELINILLEYNIQVK-------DALLHAIKEE--YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLD  147 (272)
Q Consensus        77 ~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~  147 (272)
                      |||+|+..|+.+++++|+++|++++       ||||+|+..+  ..+++++|+++|++++.     ..+..|.|||+.+.
T Consensus        75 pLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~-----~~d~~g~tpL~aa~  149 (446)
T PHA02946         75 PLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN-----SVDEEGCGPLLACT  149 (446)
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccc-----ccCCCCCcHHHHHH
Confidence            9999999999999999999999984       7999998765  47899999999999872     24788999998544


Q ss_pred             hcCCC-------CccccccCCCCCCCCHHHHHHHcCC--HHHHHHHHhCCCCc-------hhHHHHHHHcC--CHHHHHH
Q psy11714        148 ELKDQ-------PEVFNINCVDPLNRSSLIAAIENEN--IELINILLEYNIQV-------KDALLHAIKEE--YVEAVEI  209 (272)
Q Consensus       148 ~~~~~-------~~~~~~~~~d~~~~t~L~~a~~~g~--~~~~~~Ll~~g~~~-------~t~l~~A~~~~--~~~~~~~  209 (272)
                      . +..       ..+++++.+|..|.||||+|+..++  .+++++|+++|+++       +||||+|+..+  +.+++++
T Consensus       150 ~-~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~l  228 (446)
T PHA02946        150 D-PSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINL  228 (446)
T ss_pred             C-CChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHH
Confidence            3 221       2268999999999999999987554  68999999999998       59999999986  7899999


Q ss_pred             HHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC-HHHHHHHHHCCCCCC
Q psy11714        210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN-YEILKILLDRGATLP  266 (272)
Q Consensus       210 Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~-~~iv~~Ll~~ga~~~  266 (272)
                      |++ |++++               .+|..|.||||+|+..++ .+++++|+++|++++
T Consensus       229 Ll~-gadin---------------~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        229 LLP-STDVN---------------KQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             HHc-CCCCC---------------CCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC
Confidence            985 89998               789999999999999988 589999999998754

>PHA03095 ankyrin-like protein; Provisional

Probab=99.98  E-value=5.3e-31  Score=235.95  Aligned_cols=207  Identities=17%  Similarity=0.173  Sum_probs=186.4

Q ss_pred             ChhhhHHHHHHHcC-CHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCChh-------h
Q psy11714         33 TPQEKRFLLVAERG-DCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAI--ENENIELINILLEYNIQVK-------D  102 (272)
Q Consensus        33 ~~~~~~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~-------t  102 (272)
                      ..+.++||+|+..| ..++++.|++.|      +++|.++..|.||||+|+  ..++.+++++|+++|++++       |
T Consensus        81 ~~g~TpLh~A~~~~~~~~iv~lLl~~g------a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~t  154 (471)
T PHA03095         81 RCGFTPLHLYLYNATTLDVIKLLIKAG------ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMT  154 (471)
T ss_pred             CCCCCHHHHHHHcCCcHHHHHHHHHcC------CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            35678899999999 599999999997      999999999999999999  5568999999999999984       7


Q ss_pred             HHHHHHHcC--cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC---------CccccccCCCCCCCCHHHH
Q psy11714        103 ALLHAIKEE--YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ---------PEVFNINCVDPLNRSSLIA  171 (272)
Q Consensus       103 ~l~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~---------~~~~~~~~~d~~~~t~L~~  171 (272)
                      |||+|+..+  +.+++++|+++|++++      ..+..|.||||.++.....         ..+++++.+|..|.||||+
T Consensus       155 pL~~a~~~~~~~~~iv~~Ll~~g~~~~------~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~  228 (471)
T PHA03095        155 PLAVLLKSRNANVELLRLLIDAGADVY------AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHS  228 (471)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHcCCCCc------ccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            999998876  6899999999999988      4578899999998875321         2278999999999999999


Q ss_pred             HHHcCCH--HHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcH
Q psy11714        172 AIENENI--ELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITP  242 (272)
Q Consensus       172 a~~~g~~--~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~  242 (272)
                      |+..|..  .+++.|++.|+++       .||||+|+..|+.+++++|+++|++++               .++..|.||
T Consensus       229 Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n---------------~~~~~g~tp  293 (471)
T PHA03095        229 MATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN---------------AVSSDGNTP  293 (471)
T ss_pred             HHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc---------------ccCCCCCCH
Confidence            9999875  6889999999988       599999999999999999999999999               788999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        243 LILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       243 l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                      ||+|+..++.+++++|+++|++++
T Consensus       294 l~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        294 LSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHhCCCHH
Confidence            999999999999999999999874

>KOG4412|consensus

Probab=99.98  E-value=4e-32  Score=200.90  Aligned_cols=180  Identities=19%  Similarity=0.192  Sum_probs=150.6

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHH-CCCCh-------hhHHHHHHH
Q psy11714         39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDP-LNRSSLIAAIENENIELINILLE-YNIQV-------KDALLHAIK  109 (272)
Q Consensus        39 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~-~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~-------~t~l~~A~~  109 (272)
                      .+.+++......++.+++..+     --+|.++. +|+||||+||..|+.+++++|++ .+..+       .||||+|+.
T Consensus         7 ~~~~~~~~~~~kveel~~s~~-----kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    7 GKAICENCEEFKVEELIQSDP-----KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             HHHHHhhchHHHHHHHHhcCh-----hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            445555666667777777652     24555555 89999999999999999999994 44444       379999999


Q ss_pred             cCcHHHHHHHHcc-ccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy11714        110 EEYVEAVEILLEW-EEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYN  188 (272)
Q Consensus       110 ~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g  188 (272)
                      .|+.++|+-|+.+ |                                .++|..+..|.|+||+|+.+|..+|+++|++.|
T Consensus        82 ~g~~evVk~Ll~r~~--------------------------------advna~tn~G~T~LHyAagK~r~eIaqlLle~g  129 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSG--------------------------------ADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG  129 (226)
T ss_pred             cCcHHHHHHHhcCCC--------------------------------CCcceecCCCcceehhhhcCChhhHHHHHHhcC
Confidence            9999999999986 4                                456678888999999999999999999999999


Q ss_pred             CCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        189 IQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       189 ~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                      +.+       .||||.|+.-|..+++++|+..|+.+|               .+|++|.||||.|...|+.++..+|+++
T Consensus       130 a~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n---------------~qDk~G~TpL~~al~e~~~d~a~lLV~~  194 (226)
T KOG4412|consen  130 ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN---------------TQDKYGFTPLHHALAEGHPDVAVLLVRA  194 (226)
T ss_pred             CCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC---------------cccccCccHHHHHHhccCchHHHHHHHh
Confidence            888       499999999999999999999999998               7899999999999888899999999999


Q ss_pred             CCCCCCCCC
Q psy11714        262 GATLPMPHD  270 (272)
Q Consensus       262 ga~~~~~~~  270 (272)
                      ||+++..|+
T Consensus       195 gAd~~~edk  203 (226)
T KOG4412|consen  195 GADTDREDK  203 (226)
T ss_pred             ccceeeccc
Confidence            999887764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.1e-30  Score=243.25  Aligned_cols=207  Identities=22%  Similarity=0.276  Sum_probs=179.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCChh-------hHHHHHHH
Q psy11714         38 RFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI-ELINILLEYNIQVK-------DALLHAIK  109 (272)
Q Consensus        38 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~~-------t~l~~A~~  109 (272)
                      .|+.|+..++.+.++.+++.|      +++|..+..|.||||+|+..++. +++++|+++|++++       ||||+|+.
T Consensus       243 ~L~~ai~~~~~~~~~~Ll~~g------~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~  316 (682)
T PHA02876        243 SLLKAIRNEDLETSLLLYDAG------FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAK  316 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            344455555555555555555      78889999999999999999986 69999999999883       89999999


Q ss_pred             cC-cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC--------CccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        110 EE-YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ--------PEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       110 ~~-~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~--------~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      .| ..+++++|+..|++++      ..+..|.||||+|+..+..        ..+++++.+|..|.||||+|+..|+.++
T Consensus       317 ~g~~~~~v~~Ll~~gadin------~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~i  390 (682)
T PHA02876        317 NGYDTENIRTLIMLGADVN------AADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVI  390 (682)
T ss_pred             hCCCHHHHHHHHHcCCCCC------CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHH
Confidence            98 6899999999999998      6788999999999876432        2378999999999999999999999999


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCC-HHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcC-C
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEY-VEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN-N  251 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~-~  251 (272)
                      +++|+++|+++       .||||+|+..++ ..++++|+++|++++               .+|..|.||||+|+..+ +
T Consensus       391 v~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin---------------~~d~~G~TpLh~Aa~~~~~  455 (682)
T PHA02876        391 INTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN---------------SKNKDLSTPLHYACKKNCK  455 (682)
T ss_pred             HHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC---------------cCCCCCChHHHHHHHhCCc
Confidence            99999999998       599999987666 567899999999999               78999999999999877 6


Q ss_pred             HHHHHHHHHCCCCCCCCCCC
Q psy11714        252 YEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       252 ~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      .+++++|+++||+++..+..
T Consensus       456 ~~iv~lLl~~Gad~n~~d~~  475 (682)
T PHA02876        456 LDVIEMLLDNGADVNAINIQ  475 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCC
Confidence            89999999999999998865

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=9e-31  Score=231.96  Aligned_cols=206  Identities=20%  Similarity=0.291  Sum_probs=178.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIK  109 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~  109 (272)
                      ..|..|+..|+++.++.+++.+     +..++..+..|.||||.|+..|+.++|++|+++|++++       ||||.|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~-----~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~   77 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNK-----GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIK   77 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcC-----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            3589999999999999999876     37788888899999999999999999999999999984       69999999


Q ss_pred             cCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy11714        110 EEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI  189 (272)
Q Consensus       110 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~  189 (272)
                      .++.+++++|+++|+++......    ......+....     ..+.+++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        78 ~~~~~iv~~Ll~~g~~~~~~~~~----~~~~~~i~~ll-----~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ga  148 (434)
T PHA02874         78 IGAHDIIKLLIDNGVDTSILPIP----CIEKDMIKTIL-----DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA  148 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCcchhc----cCCHHHHHHHH-----HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCC
Confidence            99999999999999876521100    01111122221     2367889999999999999999999999999999999


Q ss_pred             Cc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy11714        190 QV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG  262 (272)
Q Consensus       190 ~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~g  262 (272)
                      ++       .||||+|+..++.+++++|+++|++++               ..+..|.||||+|+..|+.+++++|+++|
T Consensus       149 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n---------------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g  213 (434)
T PHA02874        149 DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN---------------VKDNNGESPLHNAAEYGDYACIKLLIDHG  213 (434)
T ss_pred             CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC---------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            88       599999999999999999999999998               67889999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy11714        263 ATLPMPHDV  271 (272)
Q Consensus       263 a~~~~~~~~  271 (272)
                      ++++..+.+
T Consensus       214 ~~i~~~~~~  222 (434)
T PHA02874        214 NHIMNKCKN  222 (434)
T ss_pred             CCCcCCCCC
Confidence            999887754

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2e-30  Score=241.53  Aligned_cols=213  Identities=20%  Similarity=0.211  Sum_probs=166.9

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~  108 (272)
                      .+.++.++..|+.++++.|++.|      +++|.+|..|.||||+|+..|+.++|++|+++|++++       ||||+|+
T Consensus       146 ~~~l~~~i~~~~~~i~k~Ll~~G------advn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~  219 (682)
T PHA02876        146 MKLIKERIQQDELLIAEMLLEGG------ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV  219 (682)
T ss_pred             hHHHHHHHHCCcHHHHHHHHhCC------CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHH
Confidence            45688889999999999999997      9999999999999999999999999999999999884       6999999


Q ss_pred             HcCcHHHHHHHHccccccccCC----------------------C-CccccCCcccHHHHHHhcCCC--------Ccccc
Q psy11714        109 KEEYVEAVEILLEWEEKIHVHG----------------------Q-PYVSENKGRTIFMMLDELKDQ--------PEVFN  157 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~g~~~~~~~----------------------~-~~~~~~~~~t~l~~~~~~~~~--------~~~~~  157 (272)
                      ..++.+++++|++++.+++...                      . ....+..|.||||+|+..+..        ..+++
T Consensus       220 ~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad  299 (682)
T PHA02876        220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD  299 (682)
T ss_pred             HcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC
Confidence            9888888888877666554211                      0 113456788999999887653        22678


Q ss_pred             ccCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCc-------hhHHHHHHHc-CCHHHHHHHHhcCccCCCCCCcchhhh
Q psy11714        158 INCVDPLNRSSLIAAIENE-NIELINILLEYNIQV-------KDALLHAIKE-EYVEAVEILLEWEEKIHVHGQPYSWEA  228 (272)
Q Consensus       158 ~~~~d~~~~t~L~~a~~~g-~~~~~~~Ll~~g~~~-------~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~~~~  228 (272)
                      ++.+|..|.||||+|+..| ..++++.|+..|+++       .||||+|+.. ++.+++++|+++|++++          
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin----------  369 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVN----------  369 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCc----------
Confidence            8888888999999999888 588888888888887       4788888774 46777888888888887          


Q ss_pred             hhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy11714        229 VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPH  269 (272)
Q Consensus       229 ~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~  269 (272)
                           .++..|.||||+|+..++.+++++|+++|++++..+
T Consensus       370 -----~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~  405 (682)
T PHA02876        370 -----ARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS  405 (682)
T ss_pred             -----cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence                 556666666666666666666666666666666554

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=232.11  Aligned_cols=215  Identities=15%  Similarity=0.236  Sum_probs=174.0

Q ss_pred             cCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCChh------hHHHHHHHcC-----
Q psy11714         45 RGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIEN--ENIELINILLEYNIQVK------DALLHAIKEE-----  111 (272)
Q Consensus        45 ~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~------t~l~~A~~~~-----  111 (272)
                      ..+.++++.|++.|      +++|.. ..|.||||.++..  ++.++|++|+++|++++      ||||.|+..+     
T Consensus        13 ~~~~~~v~~LL~~G------advN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~   85 (494)
T PHA02989         13 TVDKNALEFLLRTG------FDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSN   85 (494)
T ss_pred             cCcHHHHHHHHHcC------CCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchh
Confidence            47899999999997      999988 5688998765543  37899999999999985      7999887643     


Q ss_pred             -cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC----------Cccccc-cCCCCCCCCHHHHHHHc--CC
Q psy11714        112 -YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ----------PEVFNI-NCVDPLNRSSLIAAIEN--EN  177 (272)
Q Consensus       112 -~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~----------~~~~~~-~~~d~~~~t~L~~a~~~--g~  177 (272)
                       ..+++++|+++|++++      .++..|.|||+.|+.....          ..|+++ +.+|..|.||||+|+..  ++
T Consensus        86 ~~~~iv~~Ll~~Gadin------~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~  159 (494)
T PHA02989         86 KIKKIVKLLLKFGADIN------LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVK  159 (494)
T ss_pred             hHHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCC
Confidence             5789999999999998      6788899999987754321          237888 78999999999998754  68


Q ss_pred             HHHHHHHHhCCCCc--------hhHHHHHHHc----CCHHHHHHHHhcCccCCCCCC----cchhhhh------------
Q psy11714        178 IELINILLEYNIQV--------KDALLHAIKE----EYVEAVEILLEWEEKIHVHGQ----PYSWEAV------------  229 (272)
Q Consensus       178 ~~~~~~Ll~~g~~~--------~t~l~~A~~~----~~~~~~~~Ll~~g~~~~~~~~----~~~~~~~------------  229 (272)
                      .+++++|+++|+++        .||||+|+..    ++.+++++|+++|++++....    +++....            
T Consensus       160 ~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~i  239 (494)
T PHA02989        160 KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKV  239 (494)
T ss_pred             HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHH
Confidence            89999999999887        4899988765    489999999999999985432    2221110            


Q ss_pred             -------hcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        230 -------DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       230 -------~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                             -..+.+|..|.||||+|+..++.+++++|+++|||++..+.++
T Consensus       240 l~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G  289 (494)
T PHA02989        240 LNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDG  289 (494)
T ss_pred             HHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCC
Confidence                   1135678899999999999999999999999999999998654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=2e-30  Score=236.95  Aligned_cols=227  Identities=14%  Similarity=0.130  Sum_probs=178.7

Q ss_pred             hhhhHHHHHHH--cCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCC--HHHHHHHHHCCCChh-------h
Q psy11714         34 PQEKRFLLVAE--RGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN--IELINILLEYNIQVK-------D  102 (272)
Q Consensus        34 ~~~~~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~~~-------t  102 (272)
                      .+.++||.|+.  .++.++++.|++.|      +++|.+|..|.||||+|+..|+  .++|++|+++|++++       |
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~G------ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~T  249 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNG------VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMS  249 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            45678998764  46889999999997      9999999999999999999985  589999999999984       7


Q ss_pred             HHHHH-------------------------------------HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHH
Q psy11714        103 ALLHA-------------------------------------IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMM  145 (272)
Q Consensus       103 ~l~~A-------------------------------------~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~  145 (272)
                      |||+|                                     +..|+.+++++|+++|++++      .++..|+||||+
T Consensus       250 PLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN------~kD~~G~TPLH~  323 (764)
T PHA02716        250 PIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH------YKDSAGRTCLHQ  323 (764)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee------ccCCCCCCHHHH
Confidence            99865                                     34477889999999999988      788999999998


Q ss_pred             HHhcC--CC-------CccccccCCCCCCCCHHHHHHH--------------cCCHHHHHHHHhCCCCc-------hhHH
Q psy11714        146 LDELK--DQ-------PEVFNINCVDPLNRSSLIAAIE--------------NENIELINILLEYNIQV-------KDAL  195 (272)
Q Consensus       146 ~~~~~--~~-------~~~~~~~~~d~~~~t~L~~a~~--------------~g~~~~~~~Ll~~g~~~-------~t~l  195 (272)
                      |+...  ..       ..|++++.+|..|.||||+|+.              .++.+++++|+++|+++       .|||
T Consensus       324 Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPL  403 (764)
T PHA02716        324 YILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPL  403 (764)
T ss_pred             HHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChH
Confidence            76532  21       2378999999999999999875              36899999999999998       5999


Q ss_pred             HH----HHHcCCHHHHHHHHhcCccCCCC------------CCcc---hhh-----------------------------
Q psy11714        196 LH----AIKEEYVEAVEILLEWEEKIHVH------------GQPY---SWE-----------------------------  227 (272)
Q Consensus       196 ~~----A~~~~~~~~~~~Ll~~g~~~~~~------------~~~~---~~~-----------------------------  227 (272)
                      |.    |...++.+++++|++.|+.....            ..+.   +..                             
T Consensus       404 h~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~  483 (764)
T PHA02716        404 TSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCA  483 (764)
T ss_pred             HHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHH
Confidence            93    23457799999999987542110            0010   000                             


Q ss_pred             --hhhcCCCCCCCCCcHHHHHHHcCCH-----HHHHHHHHCCCCCCCCCCCC
Q psy11714        228 --AVDRSSSTFTPDITPLILAAHMNNY-----EILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       228 --~~~~~~~~~~~g~t~l~~A~~~~~~-----~iv~~Ll~~ga~~~~~~~~~  272 (272)
                        ..-..+..+..|.||||+|+..|+.     +++++|+++|||+|.++..+
T Consensus       484 ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G  535 (764)
T PHA02716        484 IIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNG  535 (764)
T ss_pred             HHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCC
Confidence              0011245678899999999999876     55699999999999998764

>KOG0509|consensus

Probab=99.97  E-value=4.2e-31  Score=229.16  Aligned_cols=187  Identities=20%  Similarity=0.234  Sum_probs=172.6

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHc-cCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------hHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDE-LKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK--------DALLH  106 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~l~~  106 (272)
                      ...+..|++.|+++.++.+++. +      ..++..|..|.|+||+|+.+++.+++++|+++|+++|        ||||+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g------~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEG------ESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcC------cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchH
Confidence            3448899999999999999998 5      8999999999999999999999999999999999996        79999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCCCCCCCCHHHHHHHcCCHH
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCVDPLNRSSLIAAIENENIE  179 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~d~~~~t~L~~a~~~g~~~  179 (272)
                      |++.|+..++.+|+++||+++      .+|.+|.+|+|+|+..++..-       +.+++.+|.+|+|||++|+.+|...
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt------~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~  192 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPT------LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFAL  192 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCc------eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccH
Confidence            999999999999999999999      899999999999999877644       6899999999999999999999988


Q ss_pred             HHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHc
Q psy11714        180 LINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHM  249 (272)
Q Consensus       180 ~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  249 (272)
                      .+..|+..|+.+        +||||+|+..|+.+++.+|++-|++.+               ..|..|.||+.+|.++
T Consensus       193 ~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d---------------~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  193 FVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLD---------------KTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCccc---------------ccccCCCCHHHHHHHh
Confidence            899999999888        699999999999999996666667777               6778899999999877

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=3.2e-30  Score=235.62  Aligned_cols=209  Identities=16%  Similarity=0.203  Sum_probs=175.8

Q ss_pred             cChhhhHHHHHHHcCC--HHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHH----------------------------
Q psy11714         32 LTPQEKRFLLVAERGD--CATVRKMLDELKDQPEVFNINCVDPLNRSSLIAA----------------------------   81 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~--~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A----------------------------   81 (272)
                      ...+.++||.|+..|+  .++++.|++.|      +++|.+|..|.||||+|                            
T Consensus       209 D~~G~TPLH~Aa~~g~~~~eIVklLLe~G------ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~  282 (764)
T PHA02716        209 NNHLITPLHTYLITGNVCASVIKKIIELG------GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIP  282 (764)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccch
Confidence            3456789999999995  48999999998      99999999999999975                            


Q ss_pred             ---------HHcCCHHHHHHHHHCCCChh-------hHHHHHHH--cCcHHHHHHHHccccccccCCCCccccCCcccHH
Q psy11714         82 ---------IENENIELINILLEYNIQVK-------DALLHAIK--EEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIF  143 (272)
Q Consensus        82 ---------~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~--~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l  143 (272)
                               +..|+.+++++|+++|++++       ||||+|+.  .++.+++++|+++|++++      .++..|.|||
T Consensus       283 ~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN------~kD~~G~TPL  356 (764)
T PHA02716        283 MILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN------EPDNIGNTVL  356 (764)
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc------cCCCCCCCHH
Confidence                     34577899999999999884       89999864  457899999999999998      7889999999


Q ss_pred             HHHHhcC--------------C-------CCccccccCCCCCCCCHHHHH----HHcCCHHHHHHHHhCCCC--------
Q psy11714        144 MMLDELK--------------D-------QPEVFNINCVDPLNRSSLIAA----IENENIELINILLEYNIQ--------  190 (272)
Q Consensus       144 ~~~~~~~--------------~-------~~~~~~~~~~d~~~~t~L~~a----~~~g~~~~~~~Ll~~g~~--------  190 (272)
                      |+++...              .       +..|++++.+|..|.||||.+    ...+..+++++|++.|+.        
T Consensus       357 H~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~  436 (764)
T PHA02716        357 HTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRIL  436 (764)
T ss_pred             HHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhh
Confidence            9976421              0       123789999999999999942    235678888888875420        


Q ss_pred             -----------------------------------------------------c-------hhHHHHHHHcCCH-----H
Q psy11714        191 -----------------------------------------------------V-------KDALLHAIKEEYV-----E  205 (272)
Q Consensus       191 -----------------------------------------------------~-------~t~l~~A~~~~~~-----~  205 (272)
                                                                           +       +||||+|+..|+.     +
T Consensus       437 q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e  516 (764)
T PHA02716        437 QDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMD  516 (764)
T ss_pred             hhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHH
Confidence                                                                 0       4999999999876     4


Q ss_pred             HHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCH-----HHHHHHHHCCCCCCC
Q psy11714        206 AVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNY-----EILKILLDRGATLPM  267 (272)
Q Consensus       206 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~-----~iv~~Ll~~ga~~~~  267 (272)
                      ++++|+++|++++               .++..|.||||+|+++|+.     ++|++|+++|++++.
T Consensus       517 ~~k~LL~~GADIN---------------~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~  568 (764)
T PHA02716        517 SFVYLLSIQYNIN---------------IPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDI  568 (764)
T ss_pred             HHHHHHhCCCCCc---------------ccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcch
Confidence            5699999999999               7899999999999999976     999999999999875

>KOG0510|consensus

Probab=99.97  E-value=1.4e-30  Score=230.47  Aligned_cols=216  Identities=20%  Similarity=0.174  Sum_probs=154.4

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------h-------
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------K-------  101 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~-------  101 (272)
                      ..++|.|+..|+.++++.|++.+      +++|..|..|.||||.||..++.|..+.|++.|+++       +       
T Consensus       122 ~aplh~A~~~~~~s~L~~Ll~~~------~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa  195 (929)
T KOG0510|consen  122 NAPLHLAADSGNYSCLKLLLDYG------ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAA  195 (929)
T ss_pred             cCchhhccccchHHHHHHHHHhc------CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHH
Confidence            45588888888888888888887      888888888888888888888888878888888887       1       


Q ss_pred             -------------------------------hHHHHHHHcCcHHHHHHHHccccccccCC---------CCccccCCccc
Q psy11714        102 -------------------------------DALLHAIKEEYVEAVEILLEWEEKIHVHG---------QPYVSENKGRT  141 (272)
Q Consensus       102 -------------------------------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~---------~~~~~~~~~~t  141 (272)
                                                     +|||.|+..|+.++++..+++|+.+....         -....|++|.|
T Consensus       196 ~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~t  275 (929)
T KOG0510|consen  196 RSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCT  275 (929)
T ss_pred             HhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCc
Confidence                                           35555555555555555555444333100         01234566777


Q ss_pred             HHHHHHhcCCCCc-------cccccCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCc--------hhHHHHHHHcCCHH
Q psy11714        142 IFMMLDELKDQPE-------VFNINCVDPLNRSSLIAAIENENIELINILLE-YNIQV--------KDALLHAIKEEYVE  205 (272)
Q Consensus       142 ~l~~~~~~~~~~~-------~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~-~g~~~--------~t~l~~A~~~~~~~  205 (272)
                      |||+|+..+....       |++++.++.++.||||.|+.+|++++|+.|++ .|.-.        .||||.|+..|+..
T Consensus       276 pLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~  355 (929)
T KOG0510|consen  276 PLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDR  355 (929)
T ss_pred             hHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHH
Confidence            7777777655432       56777777777777777777777777777776 33111        47777777777777


Q ss_pred             HHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy11714        206 AVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPH  269 (272)
Q Consensus       206 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~  269 (272)
                      +++.|+.+|+....            ....|..|.||||.|+.+|+..+|++|+++||++..++
T Consensus       356 v~qlLl~~GA~~~~------------~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n  407 (929)
T KOG0510|consen  356 VVQLLLNKGALFLN------------MSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKN  407 (929)
T ss_pred             HHHHHHhcChhhhc------------ccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecc
Confidence            77777777776652            01348899999999999999999999999999997655

>KOG4412|consensus

Probab=99.97  E-value=1.1e-30  Score=193.34  Aligned_cols=162  Identities=20%  Similarity=0.182  Sum_probs=149.3

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCChh-------hHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-NIQVK-------DALL  105 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~-------t~l~  105 (272)
                      +..++||+|+..|..+++..|+++.     +..+|.+|..|+||||.|+..|+.++|+.|+.+ |+|+|       ||||
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~-----nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LH  111 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQP-----NVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLH  111 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcC-----CCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceeh
Confidence            3456799999999999999999865     599999999999999999999999999999998 99995       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL  185 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll  185 (272)
                      ||+..|..+++++|+++|+.++                                .+|..|.||||-|+.-|..+++++|+
T Consensus       112 yAagK~r~eIaqlLle~ga~i~--------------------------------~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen  112 YAAGKGRLEIAQLLLEKGALIR--------------------------------IKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hhhcCChhhHHHHHHhcCCCCc--------------------------------ccccccCchhHHHHhccchhhHHHHH
Confidence            9999999999999999986654                                88999999999999999999999999


Q ss_pred             hCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHH
Q psy11714        186 EYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAH  248 (272)
Q Consensus       186 ~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  248 (272)
                      ..|+.+       +||||+|...|+.++...|+++|++++               ..|++| ||+..|+-
T Consensus       160 ~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~---------------~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  160 SQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTD---------------REDKEG-TALRIACN  213 (226)
T ss_pred             hcCCCCCcccccCccHHHHHHhccCchHHHHHHHhcccee---------------eccccC-chHHHHHH
Confidence            999888       599999999999999999999999998               678878 99888764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.7e-29  Score=225.83  Aligned_cols=203  Identities=18%  Similarity=0.246  Sum_probs=165.9

Q ss_pred             hhhHHHHHHHc--CCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcC------CHHHHHHHHHCCCChh-----
Q psy11714         35 QEKRFLLVAER--GDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENE------NIELINILLEYNIQVK-----  101 (272)
Q Consensus        35 ~~~~l~~a~~~--g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~------~~~~v~~Ll~~g~~~~-----  101 (272)
                      +.++|+.++..  ++.++++.|++.|      +++|.++ .+.||||.|+..+      +.+++++|+++|++++     
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~G------Advn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~  107 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDNG------ADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFN  107 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHcC------CCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCC
Confidence            34456554443  4689999999987      8998876 5689999887643      4789999999999884     


Q ss_pred             --hHHHHHHHc---CcHHHHHHHHcccccc-ccCCCCccccCCcccHHHHHHhcCCC---------CccccccC-CCCCC
Q psy11714        102 --DALLHAIKE---EYVEAVEILLEWEEKI-HVHGQPYVSENKGRTIFMMLDELKDQ---------PEVFNINC-VDPLN  165 (272)
Q Consensus       102 --t~l~~A~~~---~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~t~l~~~~~~~~~---------~~~~~~~~-~d~~~  165 (272)
                        ||||.|+..   ++.+++++|+++|+++ +      .++..|.||||+++.....         ..|++++. .+..|
T Consensus       108 g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~------~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g  181 (494)
T PHA02989        108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVND------VKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG  181 (494)
T ss_pred             CCcHHHHHHHhcccCcHHHHHHHHHCCCCccc------ccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccC
Confidence              799887654   5789999999999998 5      5778899999988754321         22678877 57789


Q ss_pred             CCHHHHHHHcC----CHHHHHHHHhCCCCc---------------------------------------------hhHHH
Q psy11714        166 RSSLIAAIENE----NIELINILLEYNIQV---------------------------------------------KDALL  196 (272)
Q Consensus       166 ~t~L~~a~~~g----~~~~~~~Ll~~g~~~---------------------------------------------~t~l~  196 (272)
                      .||||+|+..+    +.+++++|+++|+++                                             .||||
T Consensus       182 ~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~  261 (494)
T PHA02989        182 LTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLL  261 (494)
T ss_pred             CChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHH
Confidence            99999887654    789999999988764                                             38999


Q ss_pred             HHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy11714        197 HAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL  265 (272)
Q Consensus       197 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~  265 (272)
                      +|+..++.+++++|+++|++++               .++..|.||||+|+..++.+++++|++++...
T Consensus       262 ~Aa~~~~~~~v~~LL~~Gadin---------------~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        262 ISAKVDNYEAFNYLLKLGDDIY---------------NVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             HHHHhcCHHHHHHHHHcCCCcc---------------ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            9999999999999999999999               78899999999999999999999999988654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=226.89  Aligned_cols=197  Identities=14%  Similarity=0.198  Sum_probs=156.8

Q ss_pred             HHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCChh-------hHHHHHHHc
Q psy11714         43 AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIEN-----ENIELINILLEYNIQVK-------DALLHAIKE  110 (272)
Q Consensus        43 ~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~g~~~~-------t~l~~A~~~  110 (272)
                      ...++.++++.|++.|      +++|..|..|.||||.|+..     ++.+++++|+++|++++       ||||+|+..
T Consensus        46 ~~~~~~~iv~~Ll~~G------advn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~  119 (489)
T PHA02798         46 RDSPSTDIVKLFINLG------ANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSN  119 (489)
T ss_pred             CCCCCHHHHHHHHHCC------CCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHc
Confidence            3456899999999997      99999999999999998764     66899999999999984       799999887


Q ss_pred             C---cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCC---C-------CccccccCCC-CCCCCHHHHHHHc-
Q psy11714        111 E---YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKD---Q-------PEVFNINCVD-PLNRSSLIAAIEN-  175 (272)
Q Consensus       111 ~---~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~---~-------~~~~~~~~~d-~~~~t~L~~a~~~-  175 (272)
                      +   +.+++++|+++|++++      .++..|.||||+++..+.   .       ..|++++.++ ..|.||||.++.. 
T Consensus       120 ~~~~~~~iv~~Ll~~Gadvn------~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~  193 (489)
T PHA02798        120 GYINNLEILLFMIENGADTT------LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYN  193 (489)
T ss_pred             CCcChHHHHHHHHHcCCCcc------ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhc
Confidence            5   6899999999999998      788899999999888765   1       1267887774 5688999988764 


Q ss_pred             ---CCHHHHHHHHhCCCCc----------------------------------------------hhHHHHHHHcCCHHH
Q psy11714        176 ---ENIELINILLEYNIQV----------------------------------------------KDALLHAIKEEYVEA  206 (272)
Q Consensus       176 ---g~~~~~~~Ll~~g~~~----------------------------------------------~t~l~~A~~~~~~~~  206 (272)
                         ++.+++++|+++|+++                                              .||||+|+..++.++
T Consensus       194 ~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~  273 (489)
T PHA02798        194 IDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKI  273 (489)
T ss_pred             cccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHH
Confidence               4788999998888643                                              367777777777777


Q ss_pred             HHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        207 VEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       207 ~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                      +++|+++|++++               .++..|.||||+|+..++.++++.|+++|++++
T Consensus       274 v~~LL~~GAdin---------------~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        274 FEYLLQLGGDIN---------------IITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHHHHcCCccc---------------ccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            777777777777               566777777777777777777777777777665

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.2e-29  Score=220.87  Aligned_cols=177  Identities=19%  Similarity=0.176  Sum_probs=159.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHH
Q psy11714         74 NRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMML  146 (272)
Q Consensus        74 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~  146 (272)
                      .+++|+.|+..|+.+++++|+++|++++       ||||+|+..++.+++++|+++|++++      ..+..+.||||.|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~------~~~~~~~t~L~~A   75 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD------VKYPDIESELHDA   75 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------ccCCCcccHHHHH
Confidence            4689999999999999999999999884       79999999999999999999999887      5567889999999


Q ss_pred             HhcCCCCc-------cccc-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHH
Q psy11714        147 DELKDQPE-------VFNI-NCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILL  211 (272)
Q Consensus       147 ~~~~~~~~-------~~~~-~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll  211 (272)
                      +..+....       +... +..+..|.||||+|+..|+.+++++|+++|+++       .||||+|+..|+.+++++|+
T Consensus        76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         76 VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI  155 (413)
T ss_pred             HHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            98866433       2332 445678999999999999999999999999998       59999999999999999999


Q ss_pred             hcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        212 EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       212 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      ++|++++               .++..|.||||+|+..|+.+++++|+++||+++..+..
T Consensus       156 ~~g~~~~---------------~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~  200 (413)
T PHA02875        156 DHKACLD---------------IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN  200 (413)
T ss_pred             hcCCCCC---------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Confidence            9999998               78889999999999999999999999999999987754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.1e-28  Score=222.33  Aligned_cols=224  Identities=15%  Similarity=0.104  Sum_probs=177.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCChh-------------
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAI--ENENIELINILLEYNIQVK-------------  101 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~-------------  101 (272)
                      ..++.|+..|+.++++.|++.|      +++|.+|..|+||||+|+  ..|+.+++++|+++|++++             
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~G------adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~  178 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHG------FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYD  178 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcC------CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccc
Confidence            4567788899999999999998      999999999999999654  4689999999999999883             


Q ss_pred             --------hHHHHHHH-----------cCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC--------c
Q psy11714        102 --------DALLHAIK-----------EEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP--------E  154 (272)
Q Consensus       102 --------t~l~~A~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~--------~  154 (272)
                              ||||+|+.           .++.+++++|+++|++++      .++..|.||||+|+..+...        .
T Consensus       179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn------~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS------SIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc------cCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence                    99999986           458899999999999999      78899999999999887642        1


Q ss_pred             ccccc----CCCCCCCCHHHHHHHcC---------CHHHHHHHHhCCCCc--------------------------hhHH
Q psy11714        155 VFNIN----CVDPLNRSSLIAAIENE---------NIELINILLEYNIQV--------------------------KDAL  195 (272)
Q Consensus       155 ~~~~~----~~d~~~~t~L~~a~~~g---------~~~~~~~Ll~~g~~~--------------------------~t~l  195 (272)
                      +++.+    ..|..+.+++++|++.+         ..+++++|++.|++.                          .+++
T Consensus       253 g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (661)
T PHA02917        253 GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQ  332 (661)
T ss_pred             CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHH
Confidence            44443    45667888888888421         678999999999763                          1222


Q ss_pred             HH---HHHcCC--HHHHHHHHhcCccCCCC----------------------------------CCcchhhhhh------
Q psy11714        196 LH---AIKEEY--VEAVEILLEWEEKIHVH----------------------------------GQPYSWEAVD------  230 (272)
Q Consensus       196 ~~---A~~~~~--~~~~~~Ll~~g~~~~~~----------------------------------~~~~~~~~~~------  230 (272)
                      |.   ++..|.  .+++++|+++|++++..                                  .+|++.++..      
T Consensus       333 ~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~  412 (661)
T PHA02917        333 HILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYN  412 (661)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchh
Confidence            22   334554  55889999999887532                                  1255543211      


Q ss_pred             -------------------------------cCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        231 -------------------------------RSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       231 -------------------------------~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                                                     ..+.+|..|.||||+|+..++.+++++|+++||+++.++.++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G  485 (661)
T PHA02917        413 FYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNG  485 (661)
T ss_pred             hhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCC
Confidence                                           126778899999999999999999999999999999988653

>KOG0510|consensus

Probab=99.96  E-value=1.4e-28  Score=217.84  Aligned_cols=221  Identities=20%  Similarity=0.249  Sum_probs=189.1

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      -...+||+|+.....+.++.|++.|      ++++.++..+.+|+|+|+..+..++++.|+++|+|++       ||||.
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~g------ad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~  160 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSYG------ADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHL  160 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhcC------CCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhH
Confidence            3456799999999999999999998      9999999999999999999999999999999999995       89999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC-------C-----ccccccCCCCCCCCHHHHHHH
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ-------P-----EVFNINCVDPLNRSSLIAAIE  174 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-------~-----~~~~~~~~d~~~~t~L~~a~~  174 (272)
                      |+..++.+..+.|++.|+++.      ..+..|..|+|.|+..+.-       .     ....+|..+..+.||||.|+.
T Consensus       161 A~~~~~~E~~k~Li~~~a~~~------K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  161 AARKNKVEAKKELINKGADPC------KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVE  234 (929)
T ss_pred             HHhcChHHHHHHHHhcCCCCC------cccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhh
Confidence            999999998899999999987      5668888888888876431       1     246788888888888888888


Q ss_pred             cCCHHHHHHHHhCCCCc----------------------hhHHHHHHHcCCHHHHHHHHhcCccCCC----CCCcchhhh
Q psy11714        175 NENIELINILLEYNIQV----------------------KDALLHAIKEEYVEAVEILLEWEEKIHV----HGQPYSWEA  228 (272)
Q Consensus       175 ~g~~~~~~~Ll~~g~~~----------------------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~----~~~~~~~~~  228 (272)
                      .|+.++++..++.|+..                      .||||+|++.|+.+.++.|+.+|++++.    ..+|+|.++
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA  314 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAA  314 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHH
Confidence            88888888888876444                      3888888888888888888888888874    355777777


Q ss_pred             hh----------------cCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        229 VD----------------RSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       229 ~~----------------~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                      +.                ..+..|..|.||||+|++.|+.+++++|+++||...
T Consensus       315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            43                124567889999999999999999999999999877

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.6e-28  Score=209.15  Aligned_cols=181  Identities=15%  Similarity=0.185  Sum_probs=156.4

Q ss_pred             HHHHcCCHHHHHHHHHccCCCCCCCCcc------cCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCChh-----hHHHHH
Q psy11714         41 LVAERGDCATVRKMLDELKDQPEVFNIN------CVDPLNRSSLIAAIE--NENIELINILLEYNIQVK-----DALLHA  107 (272)
Q Consensus        41 ~a~~~g~~~~~~~ll~~~~~~~~~~~~n------~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~-----t~l~~A  107 (272)
                      .|+..+..++++.|++.|      +++|      .++..++|+||+++.  .|+.++|++|+++|++++     ||+|.|
T Consensus        83 ~~~~~~~k~~~~~l~s~~------~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A  156 (437)
T PHA02795         83 LFAYITYKDIISALVSKN------YMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRG  156 (437)
T ss_pred             HHhhcchHHHHHHHHhcc------cccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
Confidence            678888889999999987      8887      777889999999998  788999999999999984     699999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY  187 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~  187 (272)
                      +..++.+++++|+++|++.+.         .+                 +.+..+..+.+++|.|...++.+++++|+++
T Consensus       157 ~~~~~~eIVk~Lls~Ga~~~n---------~~-----------------~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~  210 (437)
T PHA02795        157 ICKKESSVVEFILNCGIPDEN---------DV-----------------KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY  210 (437)
T ss_pred             HHcCcHHHHHHHHhcCCcccc---------cc-----------------cchhhhhhccchhHHHHhcCHHHHHHHHHhC
Confidence            999999999999998875431         01                 1112224577999999999999999999999


Q ss_pred             CCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC--------H
Q psy11714        188 NIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN--------Y  252 (272)
Q Consensus       188 g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~--------~  252 (272)
                      |+++       .||||+|+..|+.+++++|+++|++++               .++..|.||||+|+..|+        .
T Consensus       211 GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN---------------~~d~~G~TpLh~Aa~~g~~~~~~~~~~  275 (437)
T PHA02795        211 IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN---------------AVMSNGYTCLDVAVDRGSVIARRETHL  275 (437)
T ss_pred             cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------------CcCCCCCCHHHHHHHcCCcccccccHH
Confidence            9999       599999999999999999999999999               788999999999999984        6


Q ss_pred             HHHHHHHHCCCCCCCC
Q psy11714        253 EILKILLDRGATLPMP  268 (272)
Q Consensus       253 ~iv~~Ll~~ga~~~~~  268 (272)
                      +++++|+++|++++.-
T Consensus       276 eIvelLL~~gadI~~~  291 (437)
T PHA02795        276 KILEILLREPLSIDCI  291 (437)
T ss_pred             HHHHHHHhCCCCCCch
Confidence            9999999999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.8e-27  Score=213.74  Aligned_cols=212  Identities=17%  Similarity=0.226  Sum_probs=172.5

Q ss_pred             CHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCChh-------hHHHHHHHc-----Cc
Q psy11714         47 DCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIEN--ENIELINILLEYNIQVK-------DALLHAIKE-----EY  112 (272)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~-------t~l~~A~~~-----~~  112 (272)
                      +.+.|+.|++.+       +++.. ..+.|+++.+...  ++.++|++|+++|++++       ||||.|+..     +.
T Consensus        17 ~~~~v~~ll~~~-------~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~   88 (489)
T PHA02798         17 KLSTVKLLIKSC-------NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHM   88 (489)
T ss_pred             cHHHHHHHHhcC-------Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhH
Confidence            467899999763       44444 3577887755544  47999999999999995       799998754     66


Q ss_pred             HHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC----------CccccccCCCCCCCCHHHHHHHcCC---HH
Q psy11714        113 VEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ----------PEVFNINCVDPLNRSSLIAAIENEN---IE  179 (272)
Q Consensus       113 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~----------~~~~~~~~~d~~~~t~L~~a~~~g~---~~  179 (272)
                      .+++++|+++|++++      .++..|.||||+|+..+..          ..|++++.+|..|.||||+|+..++   .+
T Consensus        89 ~~iv~~Ll~~GadiN------~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~  162 (489)
T PHA02798         89 LDIVKILIENGADIN------KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIE  162 (489)
T ss_pred             HHHHHHHHHCCCCCC------CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHH
Confidence            899999999999999      7889999999999986532          2379999999999999999999988   99


Q ss_pred             HHHHHHhCCCCc--------hhHHHHHHHc----CCHHHHHHHHhcCccCCCCC----Ccchh-------hh--------
Q psy11714        180 LINILLEYNIQV--------KDALLHAIKE----EYVEAVEILLEWEEKIHVHG----QPYSW-------EA--------  228 (272)
Q Consensus       180 ~~~~Ll~~g~~~--------~t~l~~A~~~----~~~~~~~~Ll~~g~~~~~~~----~~~~~-------~~--------  228 (272)
                      ++++|+++|+++        .||||.++..    ++.+++++|+++|++++...    .++..       ..        
T Consensus       163 vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~  242 (489)
T PHA02798        163 IIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNIL  242 (489)
T ss_pred             HHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHH
Confidence            999999999987        3899988654    48999999999999987532    12110       00        


Q ss_pred             -----hhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        229 -----VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       229 -----~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                           .-..+.+|..|.||||+|+.+++.+++++|+++|||++..+.++
T Consensus       243 ~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G  291 (489)
T PHA02798        243 DFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELG  291 (489)
T ss_pred             HHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCC
Confidence                 01245678899999999999999999999999999999988654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.8e-27  Score=213.30  Aligned_cols=207  Identities=22%  Similarity=0.220  Sum_probs=165.8

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcC
Q psy11714         39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEE  111 (272)
Q Consensus        39 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~  111 (272)
                      |..+....+.+.+...++.-...  .-..+.....+.||||.|+..|+.++|++|+++|++++       ||||+|+..|
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g   81 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHT--ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEP   81 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhh--hhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCc
Confidence            45555555554455555431000  11223345578999999999999999999999999984       7999999999


Q ss_pred             cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCC----------------------------------------
Q psy11714        112 YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKD----------------------------------------  151 (272)
Q Consensus       112 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~----------------------------------------  151 (272)
                      +.++++.|++.+...+.        ..+.++++.|+..+.                                        
T Consensus        82 ~~~~v~~Ll~~~~~~~~--------~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~L  153 (477)
T PHA02878         82 NKLGMKEMIRSINKCSV--------FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLL  153 (477)
T ss_pred             cHhHHHHHHHHHhcccc--------ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHH
Confidence            99999999997655431        234455555443321                                        


Q ss_pred             CCccccccCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCc
Q psy11714        152 QPEVFNINCVDPL-NRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQP  223 (272)
Q Consensus       152 ~~~~~~~~~~d~~-~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  223 (272)
                      ...|++++.++.. |.||||+|+..|+.+++++|+++|+++       .||||+|+..++.+++++|+++|++++     
T Consensus       154 l~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in-----  228 (477)
T PHA02878        154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD-----  228 (477)
T ss_pred             HHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-----
Confidence            0125788889988 999999999999999999999999998       599999999999999999999999999     


Q ss_pred             chhhhhhcCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC
Q psy11714        224 YSWEAVDRSSSTFTPDITPLILAAHM-NNYEILKILLDRGATLPMPHD  270 (272)
Q Consensus       224 ~~~~~~~~~~~~~~~g~t~l~~A~~~-~~~~iv~~Ll~~ga~~~~~~~  270 (272)
                                .++..|.||||+|+.. ++.+++++|+++|++++.++.
T Consensus       229 ----------~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        229 ----------ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             ----------CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence                      7889999999999976 689999999999999998864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=3e-27  Score=216.69  Aligned_cols=181  Identities=17%  Similarity=0.118  Sum_probs=151.3

Q ss_pred             ChhhhHHHHHHHc---CCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCH----HHHHHHHHCCC--Chh--
Q psy11714         33 TPQEKRFLLVAER---GDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI----ELINILLEYNI--QVK--  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~--~~~--  101 (272)
                      ..+.++||+|+..   |+.++++.||+.|      ++++.++..|.||||+|+..|+.    +++++|++++.  +++  
T Consensus        30 ~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g------a~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~  103 (661)
T PHA02917         30 QFKNNALHAYLFNEHCNNVEVVKLLLDSG------TNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF  103 (661)
T ss_pred             CCCCcHHHHHHHhhhcCcHHHHHHHHHCC------CCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc
Confidence            4556789987554   8899999999987      89999999999999999998884    45678887643  332  


Q ss_pred             -hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHH--HcCCH
Q psy11714        102 -DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAI--ENENI  178 (272)
Q Consensus       102 -t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~--~~g~~  178 (272)
                       ++++.|+..++.+++++|+++|++                                ++.+|..|+||||+|+  ..|+.
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gad--------------------------------in~~d~~g~T~L~~~~a~~~~~~  151 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFD--------------------------------LSVKCENHRSVIENYVMTDDPVP  151 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCC--------------------------------CCccCCCCccHHHHHHHccCCCH
Confidence             467778888899999999998755                                4578889999999654  57899


Q ss_pred             HHHHHHHhCCCCch---------------------hHHHHHHH-----------cCCHHHHHHHHhcCccCCCCCCcchh
Q psy11714        179 ELINILLEYNIQVK---------------------DALLHAIK-----------EEYVEAVEILLEWEEKIHVHGQPYSW  226 (272)
Q Consensus       179 ~~~~~Ll~~g~~~~---------------------t~l~~A~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~~~  226 (272)
                      +++++|+++|++++                     ||||+|+.           .++.+++++|+++|++++        
T Consensus       152 eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn--------  223 (661)
T PHA02917        152 EIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS--------  223 (661)
T ss_pred             HHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc--------
Confidence            99999999999872                     99999986           458999999999999999        


Q ss_pred             hhhhcCCCCCCCCCcHHHHHHHcCCH--HHHHHHHHCCCCCCC
Q psy11714        227 EAVDRSSSTFTPDITPLILAAHMNNY--EILKILLDRGATLPM  267 (272)
Q Consensus       227 ~~~~~~~~~~~~g~t~l~~A~~~~~~--~iv~~Ll~~ga~~~~  267 (272)
                             .++..|.||||+|+..|+.  ++|++|++ |++++.
T Consensus       224 -------~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        224 -------SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             -------cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence                   7899999999999999984  89999974 998764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.7e-27  Score=187.77  Aligned_cols=174  Identities=18%  Similarity=0.245  Sum_probs=147.2

Q ss_pred             cccccchhhhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCC
Q psy11714         21 DYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENE--NIELINILLEYNI   98 (272)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~   98 (272)
                      .|......+..++...++|+.|+..|+.+.++.|+..         +|..+..|.||||+|+..+  +.+++++|+++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~---------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ga   77 (209)
T PHA02859          7 EYDYNDFTDYLFYRYCNPLFYYVEKDDIEGVKKWIKF---------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGA   77 (209)
T ss_pred             ccccchhHHHHhhccCcHHHHHHHhCcHHHHHHHHHh---------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCC
Confidence            3444444455566677889999999999999999864         3567889999999999854  8999999999999


Q ss_pred             Chh--------hHHHHHHHc---CcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCC
Q psy11714         99 QVK--------DALLHAIKE---EYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRS  167 (272)
Q Consensus        99 ~~~--------t~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t  167 (272)
                      +++        ||||+|+..   ++.+++++|+++|++++                                .+|..|.|
T Consensus        78 dvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin--------------------------------~~d~~G~T  125 (209)
T PHA02859         78 DVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT--------------------------------EEDEDGKN  125 (209)
T ss_pred             CCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC--------------------------------CcCCCCCC
Confidence            984        799998754   47899999999886554                                77889999


Q ss_pred             HHHHHHH--cCCHHHHHHHHhCCCCc-------hhHHHH-HHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCC
Q psy11714        168 SLIAAIE--NENIELINILLEYNIQV-------KDALLH-AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT  237 (272)
Q Consensus       168 ~L~~a~~--~g~~~~~~~Ll~~g~~~-------~t~l~~-A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (272)
                      |||+|+.  .++.+++++|+++|+++       .||||. ++..++.+++++|+++|++++               .++.
T Consensus       126 pLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~---------------~~d~  190 (209)
T PHA02859        126 LLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN---------------ETNK  190 (209)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC---------------CCCC
Confidence            9999876  46899999999999998       599995 567889999999999999999               7889


Q ss_pred             CCCcHHHHHHHcC
Q psy11714        238 PDITPLILAAHMN  250 (272)
Q Consensus       238 ~g~t~l~~A~~~~  250 (272)
                      .|.|||++|+.++
T Consensus       191 ~g~tpl~la~~~~  203 (209)
T PHA02859        191 SGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCHHHHHhhhh
Confidence            9999999998764

>KOG0508|consensus

Probab=99.95  E-value=2.2e-28  Score=204.99  Aligned_cols=180  Identities=24%  Similarity=0.323  Sum_probs=158.5

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCC---CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------h
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPE---VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------D  102 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~---~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t  102 (272)
                      .++.++|..|++.|+.++|++|+++..-.++   ....+-..-.|.+||..|+.-||.++|+.|+++|+++|       |
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt  119 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST  119 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence            3455779999999999999999995421111   12334444568899999999999999999999999995       6


Q ss_pred             HHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHH
Q psy11714        103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELIN  182 (272)
Q Consensus       103 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~  182 (272)
                      ||..||..|+.+++++|+++|+|+                                +..|..|.|.|++||.+|+.+|++
T Consensus       120 PLraACfDG~leivKyLvE~gad~--------------------------------~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADP--------------------------------EIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCC--------------------------------cccccCCCeeEEeeeccCchHHHH
Confidence            999999999999999999998655                                477899999999999999999999


Q ss_pred             HHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHH
Q psy11714        183 ILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEIL  255 (272)
Q Consensus       183 ~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv  255 (272)
                      +|++.|+|+       +|+||.|+..|+.+++++|+++|+.++                +|..|.|||..|+..|+.++|
T Consensus       168 yLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~----------------~d~~GmtPL~~Aa~tG~~~iV  231 (615)
T KOG0508|consen  168 YLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID----------------VDGHGMTPLLLAAVTGHTDIV  231 (615)
T ss_pred             HHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee----------------ecCCCCchHHHHhhhcchHHH
Confidence            999999999       699999999999999999999999986                577899999999999999999


Q ss_pred             HHHHH
Q psy11714        256 KILLD  260 (272)
Q Consensus       256 ~~Ll~  260 (272)
                      .+|++
T Consensus       232 e~L~~  236 (615)
T KOG0508|consen  232 ERLLQ  236 (615)
T ss_pred             HHHhc
Confidence            99996

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.7e-27  Score=208.29  Aligned_cols=224  Identities=14%  Similarity=0.181  Sum_probs=165.8

Q ss_pred             hHHHH-HHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHH-cCCHHHHHHHHHCCCCh--------------
Q psy11714         37 KRFLL-VAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIE-NENIELINILLEYNIQV--------------  100 (272)
Q Consensus        37 ~~l~~-a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~~--------------  100 (272)
                      ..+++ |...|++++++.|++.|      +++|.+++.|.+|+++|+. .++++++++|+++|+++              
T Consensus        73 ~~~~~~~s~n~~lElvk~LI~~G------AdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~  146 (631)
T PHA02792         73 DIFEYLCSDNIDIELLKLLISKG------LEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQ  146 (631)
T ss_pred             cHHHHHHHhcccHHHHHHHHHcC------CCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhh
Confidence            34554 56679999999999997      9999999999999999966 69999999999999874              


Q ss_pred             -----------------------------hhHHHHHHHcC-------cHHHHHHHHccccccccCCCCccccCCcccHHH
Q psy11714        101 -----------------------------KDALLHAIKEE-------YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFM  144 (272)
Q Consensus       101 -----------------------------~t~l~~A~~~~-------~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~  144 (272)
                                                   +||||+|+..+       +.+++++|++||++++      .++..|.||||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~------~~d~~g~t~l~  220 (631)
T PHA02792        147 ITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR------YYTYREHTTLY  220 (631)
T ss_pred             cccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC------ccCCCCChHHH
Confidence                                         26999999999       8999999999999998      68888999999


Q ss_pred             HHHhcCCCCc-----------------c-----ccccC------CCCC-------CC-----------------------
Q psy11714        145 MLDELKDQPE-----------------V-----FNINC------VDPL-------NR-----------------------  166 (272)
Q Consensus       145 ~~~~~~~~~~-----------------~-----~~~~~------~d~~-------~~-----------------------  166 (272)
                      +++....+..                 +     .+...      .|.+       |.                       
T Consensus       221 ~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~  300 (631)
T PHA02792        221 YYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILK  300 (631)
T ss_pred             HHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHH
Confidence            9998763211                 0     00000      1100       00                       


Q ss_pred             -------CHHHHHHHcC--CHHHHHHHHhCCCCc-----hhHHHHHHHcCCHHHHHHHHhcCccCCCCC------Ccchh
Q psy11714        167 -------SSLIAAIENE--NIELINILLEYNIQV-----KDALLHAIKEEYVEAVEILLEWEEKIHVHG------QPYSW  226 (272)
Q Consensus       167 -------t~L~~a~~~g--~~~~~~~Ll~~g~~~-----~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~~~~  226 (272)
                             ..||....++  ..+++++|++.|++.     ..+++.|+..++.+++++|+++|++++...      .|+++
T Consensus       301 ~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~  380 (631)
T PHA02792        301 RYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFP  380 (631)
T ss_pred             HHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHH
Confidence                   1233333444  466777777777755     245666777777777777777777775422      23332


Q ss_pred             hhh-----------------hcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        227 EAV-----------------DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       227 ~~~-----------------~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      +..                 ...+.+|..|.||||+|+..++.+++++|+++||+++.++.++
T Consensus       381 A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G  443 (631)
T PHA02792        381 TLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYG  443 (631)
T ss_pred             HHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            110                 1234778899999999999999999999999999999988653

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.3e-26  Score=204.50  Aligned_cols=217  Identities=11%  Similarity=0.128  Sum_probs=155.5

Q ss_pred             ChhhhHHHHHHHcC---CHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCh-------
Q psy11714         33 TPQEKRFLLVAERG---DCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENE--NIELINILLEYNIQV-------  100 (272)
Q Consensus        33 ~~~~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~-------  100 (272)
                      ..+.++||+|+..|   +.++++.||+.|      ++++.+|..|.||||+|+..+  +.++|++|+++|++.       
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~G------Adin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~  112 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRG------VERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSN  112 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCC------CCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccc
Confidence            34678899999987   599999999998      999999999999999999866  799999999997643       


Q ss_pred             --hhHHHHHHH--cCcHHHHHHHHc-cccccccC-------------------------------CCCc--------ccc
Q psy11714        101 --KDALLHAIK--EEYVEAVEILLE-WEEKIHVH-------------------------------GQPY--------VSE  136 (272)
Q Consensus       101 --~t~l~~A~~--~~~~~~~~~Ll~-~g~~~~~~-------------------------------~~~~--------~~~  136 (272)
                        .+||+.++.  .++.+++++|+. .+++++..                               |...        ..+
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~  192 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYD  192 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccccc
Confidence              247776666  666777777774 44443321                               1110        012


Q ss_pred             CCcc-cHHHHHHhcC--C-----------CCccccccCCCCCCCCHHHH--HHHcCCHHHHHHHHh--------------
Q psy11714        137 NKGR-TIFMMLDELK--D-----------QPEVFNINCVDPLNRSSLIA--AIENENIELINILLE--------------  186 (272)
Q Consensus       137 ~~~~-t~l~~~~~~~--~-----------~~~~~~~~~~d~~~~t~L~~--a~~~g~~~~~~~Ll~--------------  186 (272)
                      ...+ |.|++.....  .           +..|+++|.+|..|.||||+  +...|+.+++++|++              
T Consensus       193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~  272 (672)
T PHA02730        193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQP  272 (672)
T ss_pred             CCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccch
Confidence            2222 3344232220  0           12278888888888888884  545667888888888              


Q ss_pred             ------------------CCCCch---------------------------h---------------------HHHHHHH
Q psy11714        187 ------------------YNIQVK---------------------------D---------------------ALLHAIK  200 (272)
Q Consensus       187 ------------------~g~~~~---------------------------t---------------------~l~~A~~  200 (272)
                                        +|+|..                           +                     .|+.-..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~  352 (672)
T PHA02730        273 YIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLH  352 (672)
T ss_pred             hhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHh
Confidence                              676661                           1                     3444444


Q ss_pred             cC---CHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHCCC--CCCCCCCC
Q psy11714        201 EE---YVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN----YEILKILLDRGA--TLPMPHDV  271 (272)
Q Consensus       201 ~~---~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~----~~iv~~Ll~~ga--~~~~~~~~  271 (272)
                      .+   +.+++++|+++|++++               .. ..|.||||+|+..++    .+++++|+++||  +++.++.+
T Consensus       353 ~~~~v~ieIvelLIs~GAdIN---------------~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~  416 (672)
T PHA02730        353 YGDMVSIPILRCMLDNGATMD---------------KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNN  416 (672)
T ss_pred             cCCcCcHHHHHHHHHCCCCCC---------------cC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccC
Confidence            33   5788888888888888               43 579999999998875    899999999998  58877654

>KOG4177|consensus

Probab=99.95  E-value=4.4e-27  Score=219.32  Aligned_cols=214  Identities=23%  Similarity=0.247  Sum_probs=177.2

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------------
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------------  101 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------  101 (272)
                      .-.+||.|+..|+++++..++..+      +.+|..+..|.||+|.|+..+..+++++|+++|+++.             
T Consensus       242 gl~~lh~a~~~g~~~i~~~l~~~g------a~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a  315 (1143)
T KOG4177|consen  242 GLTPLHVAAFMGHLDIVKLLLQHG------ASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIA  315 (1143)
T ss_pred             CccHHHHHHhccchhHHHHHHhcc------cccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhh
Confidence            346699999999999999999997      9999999999999999999999999999999998880             


Q ss_pred             ------------------------------------------------------------hHHHHHHHcCcHHHHHHHHc
Q psy11714        102 ------------------------------------------------------------DALLHAIKEEYVEAVEILLE  121 (272)
Q Consensus       102 ------------------------------------------------------------t~l~~A~~~~~~~~~~~Ll~  121 (272)
                                                                                  +|+|.|+..+..+++++++.
T Consensus       316 ~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~  395 (1143)
T KOG4177|consen  316 SRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLE  395 (1143)
T ss_pred             cccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhh
Confidence                                                                        47888888888888888888


Q ss_pred             cccccccCCC---------------------------CccccCCcccHHHHHHhcCCCCc--------cccccCCCCCCC
Q psy11714        122 WEEKIHVHGQ---------------------------PYVSENKGRTIFMMLDELKDQPE--------VFNINCVDPLNR  166 (272)
Q Consensus       122 ~g~~~~~~~~---------------------------~~~~~~~~~t~l~~~~~~~~~~~--------~~~~~~~d~~~~  166 (272)
                      +|++++..+.                           ...++..|.|++|+++..+...+        +.+++.+-..|.
T Consensus       396 ~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~  475 (1143)
T KOG4177|consen  396 AGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGF  475 (1143)
T ss_pred             ccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccC
Confidence            8888774321                           12234456777777776652211        467777777788


Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCc----------------------------------------hhHHHHHHHcCCHHH
Q psy11714        167 SSLIAAIENENIELINILLEYNIQV----------------------------------------KDALLHAIKEEYVEA  206 (272)
Q Consensus       167 t~L~~a~~~g~~~~~~~Ll~~g~~~----------------------------------------~t~l~~A~~~~~~~~  206 (272)
                      ||||+|+..|+.+++..|++.++..                                        +||||.|+..|+..+
T Consensus       476 T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~  555 (1143)
T KOG4177|consen  476 TPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDL  555 (1143)
T ss_pred             cchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchH
Confidence            8888888888877777777766333                                        489999999999999


Q ss_pred             HHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy11714        207 VEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPH  269 (272)
Q Consensus       207 ~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~  269 (272)
                      |++|+++|++++               .+++.|.||||.|+..|+.+++.+|+++||++|.-+
T Consensus       556 VkfLLe~gAdv~---------------ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  556 VKFLLEHGADVN---------------AKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             HHHhhhCCcccc---------------ccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc
Confidence            999999999999               778999999999999999999999999999999866

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3e-25  Score=177.33  Aligned_cols=154  Identities=14%  Similarity=0.185  Sum_probs=132.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCh----hhHHHHHHHcC--cHHHHHHHHccccccccCCCCccccCCcccHHHH
Q psy11714         72 PLNRSSLIAAIENENIELINILLEYNIQV----KDALLHAIKEE--YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMM  145 (272)
Q Consensus        72 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~t~l~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~  145 (272)
                      ..+.|||++|+..|+.++|+.|++.+...    .||||+|+..+  +.+++++|+++|++++                  
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn------------------   80 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN------------------   80 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC------------------
Confidence            45689999999999999999999864333    48999998754  8999999999987665                  


Q ss_pred             HHhcCCCCccccccCCC-CCCCCHHHHHHHc---CCHHHHHHHHhCCCCc-------hhHHHHHHH--cCCHHHHHHHHh
Q psy11714        146 LDELKDQPEVFNINCVD-PLNRSSLIAAIEN---ENIELINILLEYNIQV-------KDALLHAIK--EEYVEAVEILLE  212 (272)
Q Consensus       146 ~~~~~~~~~~~~~~~~d-~~~~t~L~~a~~~---g~~~~~~~Ll~~g~~~-------~t~l~~A~~--~~~~~~~~~Ll~  212 (272)
                                    .++ ..|.||||+|+..   ++.+++++|+++|+++       .||||+|+.  .++.+++++|++
T Consensus        81 --------------~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~  146 (209)
T PHA02859         81 --------------FKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID  146 (209)
T ss_pred             --------------ccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence                          554 4788999998753   4799999999999999       599999875  468999999999


Q ss_pred             cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHH-HHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        213 WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL-AAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       213 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~-A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      +|++++               .+|..|.||||. |+..++.+++++|+++|++++.+|.++
T Consensus       147 ~gadin---------------~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g  192 (209)
T PHA02859        147 SGVSFL---------------NKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSG  192 (209)
T ss_pred             cCCCcc---------------cccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            999999               788999999996 566789999999999999999988654

>KOG4177|consensus

Probab=99.94  E-value=8.4e-27  Score=217.47  Aligned_cols=206  Identities=19%  Similarity=0.239  Sum_probs=173.7

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      .....+++.|+..|..+.++.++.+|      +++|.....|.||||.|+..+++.++++++++|++++       ||+|
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~~g------a~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lh  445 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLEAG------ADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLH  445 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhhcc------CCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhh
Confidence            33455688888888888888888887      7788888888888888888888888888888887774       6888


Q ss_pred             HHHHcC-cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC--------------------------------
Q psy11714        106 HAIKEE-YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ--------------------------------  152 (272)
Q Consensus       106 ~A~~~~-~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~--------------------------------  152 (272)
                      +|+..+ ..+++..++..|++++      ....+|.||||+++..+..                                
T Consensus       446 vaa~~g~~~~~~~~l~~~g~~~n------~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  446 VAAKKGRYLQIARLLLQYGADPN------AVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             hhhhcccHhhhhhhHhhcCCCcc------hhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhh
Confidence            887777 6777777777777777      4556666666666554332                                


Q ss_pred             --------CccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccC
Q psy11714        153 --------PEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKI  217 (272)
Q Consensus       153 --------~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~  217 (272)
                              ..+++++.++.++.||||.|+.+|+.++|++|+++|+|+       .||||.|+..|+.+++.+|+++|+++
T Consensus       520 v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v  599 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV  599 (1143)
T ss_pred             HHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC
Confidence                    115788889999999999999999999999999999999       59999999999999999999999999


Q ss_pred             CCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy11714        218 HVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL  265 (272)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~  265 (272)
                      |               ..+.+|.|||++|+..|+++++++|+..|++.
T Consensus       600 n---------------a~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  600 N---------------AADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             C---------------cccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            9               78899999999999999999999999999983

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.9e-24  Score=194.62  Aligned_cols=215  Identities=14%  Similarity=0.177  Sum_probs=163.7

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcc-------cCCCCCC-cHHHHHH------HcCCHHHHHHHHHCCCC
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNIN-------CVDPLNR-SSLIAAI------ENENIELINILLEYNIQ   99 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n-------~~~~~g~-t~L~~A~------~~~~~~~v~~Ll~~g~~   99 (272)
                      .+..+++.+...++.++|+.|++.|      ++++       ..+..++ |.||+++      ..++.+++++|+++|++
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g------~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad  227 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSE------CYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS  227 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcC------CcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC
Confidence            3456789999999999999999998      6664       2444555 4566444      44689999999999999


Q ss_pred             hh-------hHHHH--HHHcCcHHHHHHHHc--------------------------------ccccccc-----C----
Q psy11714        100 VK-------DALLH--AIKEEYVEAVEILLE--------------------------------WEEKIHV-----H----  129 (272)
Q Consensus       100 ~~-------t~l~~--A~~~~~~~~~~~Ll~--------------------------------~g~~~~~-----~----  129 (272)
                      ++       ||||+  +...++.|++++|++                                +|++...     .    
T Consensus       228 IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  307 (672)
T PHA02730        228 IHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHT  307 (672)
T ss_pred             CCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCc
Confidence            96       89996  444567999999999                                6777653     0    


Q ss_pred             --CCC---ccccCCccc---------------------HHHHHHhcCC-C---------CccccccCCCCCCCCHHHHHH
Q psy11714        130 --GQP---YVSENKGRT---------------------IFMMLDELKD-Q---------PEVFNINCVDPLNRSSLIAAI  173 (272)
Q Consensus       130 --~~~---~~~~~~~~t---------------------~l~~~~~~~~-~---------~~~~~~~~~d~~~~t~L~~a~  173 (272)
                        ++.   ...+..|..                     .|+.-....+ +         ..|++++.. ..|.||||+|+
T Consensus       308 ~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa  386 (672)
T PHA02730        308 LIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYF  386 (672)
T ss_pred             chhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHH
Confidence              110   013333332                     4454455443 1         237899985 78999999999


Q ss_pred             HcCC----HHHHHHHHhCCCC--c-------hhHHHH---HHHcC---------CHHHHHHHHhcCccCCCCCCcchhhh
Q psy11714        174 ENEN----IELINILLEYNIQ--V-------KDALLH---AIKEE---------YVEAVEILLEWEEKIHVHGQPYSWEA  228 (272)
Q Consensus       174 ~~g~----~~~~~~Ll~~g~~--~-------~t~l~~---A~~~~---------~~~~~~~Ll~~g~~~~~~~~~~~~~~  228 (272)
                      ..++    .+++++|+++|++  +       .||||.   |...+         ..+++++|+++|++++          
T Consensus       387 ~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADIN----------  456 (672)
T PHA02730        387 VNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDID----------  456 (672)
T ss_pred             HHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchh----------
Confidence            8875    8999999999984  4       589984   33222         2357999999999999          


Q ss_pred             hhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy11714        229 VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD  270 (272)
Q Consensus       229 ~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~  270 (272)
                           .+|..|.||||+|+..++.+++++|+++||++|..+.
T Consensus       457 -----akD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        457 -----MIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             -----ccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence                 8899999999999999999999999999999999884

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=8.7e-25  Score=188.27  Aligned_cols=202  Identities=16%  Similarity=0.095  Sum_probs=162.0

Q ss_pred             hhhhhccccccccccchhhhccCh--hhhHHHHHHHcCCHHHH-HHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCH
Q psy11714         11 LGSVHNIARQDYCVDAPVEVALTP--QEKRFLLVAERGDCATV-RKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI   87 (272)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~a~~~g~~~~~-~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~   87 (272)
                      ++.++.....+..++...-...-+  --.++.......-.+++ .+++..|      .++|..+..|     +|+..+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~-----~~~~~~~k   90 (437)
T PHA02795         22 LSLVDDYKKHGLGVDCYVLEPVVDRKIFDRFLLEPICDPVDVLYDYFRIHR------DNIDQYIVDR-----LFAYITYK   90 (437)
T ss_pred             HHhhHHHHhcCCCcceeeechhhhHHHHHHHhhhccCCHHHHHHHHHHHcC------cchhhhhhhh-----HHhhcchH
Confidence            444555555554444332111111  11234445555666665 6677776      8998888777     99999999


Q ss_pred             HHHHHHHHCCCCh-------------hhHHHHHHH--cCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC
Q psy11714         88 ELINILLEYNIQV-------------KDALLHAIK--EEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ  152 (272)
Q Consensus        88 ~~v~~Ll~~g~~~-------------~t~l~~A~~--~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~  152 (272)
                      +++++|+.+|+++             +|+||+++.  .++.+++++|+++||+++                         
T Consensus        91 ~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn-------------------------  145 (437)
T PHA02795         91 DIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY-------------------------  145 (437)
T ss_pred             HHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC-------------------------
Confidence            9999999999995             379999999  899999999999998876                         


Q ss_pred             CccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------------hhHHHHHHHcCCHHHHHHHHhcCccCCC
Q psy11714        153 PEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------------KDALLHAIKEEYVEAVEILLEWEEKIHV  219 (272)
Q Consensus       153 ~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  219 (272)
                             .  ..+.||+|.|+..++.+++++|+++|++.             .+++|.|+..++.+++++|+++|++++ 
T Consensus       146 -------~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN-  215 (437)
T PHA02795        146 -------K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN-  215 (437)
T ss_pred             -------C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC-
Confidence                   2  23479999999999999999999999853             257788899999999999999999999 


Q ss_pred             CCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        220 HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                                    .++..|.||||+|+..|+.+++++|+++||+++.++.++
T Consensus       216 --------------~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G  254 (437)
T PHA02795        216 --------------QLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG  254 (437)
T ss_pred             --------------cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence                          789999999999999999999999999999999998654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=2.3e-24  Score=204.04  Aligned_cols=155  Identities=22%  Similarity=0.279  Sum_probs=141.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccH
Q psy11714         70 VDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTI  142 (272)
Q Consensus        70 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~  142 (272)
                      .+..+.++|+.|+..|+.++++.|++.|++++       ||||+|+..|+.+++++|+++|++                 
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-----------------  583 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-----------------  583 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-----------------
Confidence            33456789999999999999999999999884       799999999999999999998755                 


Q ss_pred             HHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-----hhHHHHHHHcCCHHHHHHHHhcCccC
Q psy11714        143 FMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-----KDALLHAIKEEYVEAVEILLEWEEKI  217 (272)
Q Consensus       143 l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-----~t~l~~A~~~~~~~~~~~Ll~~g~~~  217 (272)
                                     ++.+|..|.||||+|+..|+.+++++|+..++..     .++||.|+..|+.+++++|+++|+++
T Consensus       584 ---------------in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi  648 (823)
T PLN03192        584 ---------------VHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNV  648 (823)
T ss_pred             ---------------CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence                           4477889999999999999999999999887655     58999999999999999999999999


Q ss_pred             CCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        218 HVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      +               .+|..|.||||+|+..|+.+++++|+++||+++.++..
T Consensus       649 n---------------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~  687 (823)
T PLN03192        649 D---------------SEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD  687 (823)
T ss_pred             C---------------CCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCC
Confidence            9               78899999999999999999999999999999998854

>KOG0508|consensus

Probab=99.93  E-value=1.2e-25  Score=188.63  Aligned_cols=180  Identities=21%  Similarity=0.250  Sum_probs=150.3

Q ss_pred             HHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCChh---------------hH
Q psy11714         40 LLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE-YNIQVK---------------DA  103 (272)
Q Consensus        40 ~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~---------------t~  103 (272)
                      ..|++.|.+..+..|+...-.+.- ..+-.....|.|||..|+..||.++|++|++ .++++.               +|
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei-~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEI-ISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHH-HHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            366777777777776654210000 1122234678899999999999999999999 566662               48


Q ss_pred             HHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11714        104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI  183 (272)
Q Consensus       104 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~  183 (272)
                      |-.|+..|+.++|++|+++|+++|                                ....-..|||--||+-|+.+++++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN--------------------------------~tT~TNStPLraACfDG~leivKy  135 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVN--------------------------------DTTRTNSTPLRAACFDGHLEIVKY  135 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccc--------------------------------cccccCCccHHHHHhcchhHHHHH
Confidence            888999999999999999998876                                223345699999999999999999


Q ss_pred             HHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy11714        184 LLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILK  256 (272)
Q Consensus       184 Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~  256 (272)
                      |+++|+|+       .|+|++||.+|+.+++++|++.|+|++               .++..|+|+||.+++.|+.+++|
T Consensus       136 LvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn---------------~ks~kGNTALH~caEsG~vdivq  200 (615)
T KOG0508|consen  136 LVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN---------------AKSYKGNTALHDCAESGSVDIVQ  200 (615)
T ss_pred             HHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc---------------hhcccCchHHHhhhhcccHHHHH
Confidence            99999999       599999999999999999999999999               78899999999999999999999


Q ss_pred             HHHHCCCCCCC
Q psy11714        257 ILLDRGATLPM  267 (272)
Q Consensus       257 ~Ll~~ga~~~~  267 (272)
                      +|+++|+.+..
T Consensus       201 ~Ll~~ga~i~~  211 (615)
T KOG0508|consen  201 LLLKHGAKIDV  211 (615)
T ss_pred             HHHhCCceeee
Confidence            99999997653

>KOG0509|consensus

Probab=99.93  E-value=2.6e-25  Score=193.32  Aligned_cols=177  Identities=18%  Similarity=0.200  Sum_probs=159.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHH
Q psy11714         75 RSSLIAAIENENIELINILLEY-NIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMML  146 (272)
Q Consensus        75 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~  146 (272)
                      ...+..|++.|..+-|+.|++. |.+++       |+||+|+.+++.+++++|+++|+++|+     .-...+.||||+|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~-----~gG~l~stPLHWA  119 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNA-----IGGVLGSTPLHWA  119 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccc-----cCCCCCCCcchHH
Confidence            4567889999999999999998 88885       699999999999999999999999994     2237789999999


Q ss_pred             HhcCCC-------CccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHh
Q psy11714        147 DELKDQ-------PEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLE  212 (272)
Q Consensus       147 ~~~~~~-------~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~  212 (272)
                      +.++..       .+|++++.+|..|.+|||+|+.+|+.-++-+|+.+|+|+       +|||++|+.+|....+..|++
T Consensus       120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLK  199 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHH
Confidence            999875       348999999999999999999999999999999999888       599999999999888999999


Q ss_pred             cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy11714        213 WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD  270 (272)
Q Consensus       213 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~  270 (272)
                      .|+.+..              ..+.+|.||||+|+..|+..++++|++-|++.++.|.
T Consensus       200 f~a~~~~--------------~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~  243 (600)
T KOG0509|consen  200 FGASLLL--------------TDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNT  243 (600)
T ss_pred             hcccccc--------------cccccCCchHHHHHhcCCcceEehhhhcCCccccccc
Confidence            9999983              3358999999999999999999988888888887774

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=4.4e-23  Score=194.00  Aligned_cols=224  Identities=28%  Similarity=0.267  Sum_probs=165.4

Q ss_pred             hhhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHH-HHHHcCCHHHHHHHHHCCC--Ch-hhH
Q psy11714         28 VEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLI-AAIENENIELINILLEYNI--QV-KDA  103 (272)
Q Consensus        28 ~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~--~~-~t~  103 (272)
                      .+...++.+..|+.|++.|+.+.++.+++.++    +.++|..|..|+|||| .|+..++.+++++|+++|+  .. +||
T Consensus        10 ~~~~~~~~~~~~l~A~~~g~~~~v~~lL~~~~----~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~   85 (743)
T TIGR00870        10 EESPLSDEEKAFLPAAERGDLASVYRDLEEPK----KLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTL   85 (743)
T ss_pred             cCCCCCHHHHHHHHHHHcCCHHHHHHHhcccc----ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHH
Confidence            34456788899999999999999999999832    3899999999999999 8888999999999999995  22 589


Q ss_pred             HHHHHHcC---cHHHHHHHHccccccc----cCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCC-------
Q psy11714        104 LLHAIKEE---YVEAVEILLEWEEKIH----VHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVD-------  162 (272)
Q Consensus       104 l~~A~~~~---~~~~~~~Ll~~g~~~~----~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d-------  162 (272)
                      ||.|+..+   ...++..+...+.+.+    ...........|.||||+|+..++..       .|++++.++       
T Consensus        86 Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~  165 (743)
T TIGR00870        86 LHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK  165 (743)
T ss_pred             HHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc
Confidence            99998722   2233444444332110    00001122346899999999876532       256666542       


Q ss_pred             -------CCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcC---------CHHHHHHHHhcCccCCC
Q psy11714        163 -------PLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEE---------YVEAVEILLEWEEKIHV  219 (272)
Q Consensus       163 -------~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~---------~~~~~~~Ll~~g~~~~~  219 (272)
                             ..|.||||.|+..|+.+++++|++.|+|+       +||||+|+..+         ...+.+++++.++....
T Consensus       166 ~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~  245 (743)
T TIGR00870       166 SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD  245 (743)
T ss_pred             CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Confidence                   35889999999999999999999999888       69999998876         23456777777666531


Q ss_pred             CCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy11714        220 HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA  263 (272)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga  263 (272)
                              ..+.....|..|.||||+|+..|+.+++++|++.++
T Consensus       246 --------~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~  281 (743)
T TIGR00870       246 --------SKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKY  281 (743)
T ss_pred             --------hHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence                    112223568899999999999999999999999543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.1e-22  Score=192.73  Aligned_cols=160  Identities=22%  Similarity=0.281  Sum_probs=143.7

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHA  107 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A  107 (272)
                      ....|+.|+..|+.+.++.|++.|      +++|..|..|+||||+|+..|+.+++++|+++|++++       ||||+|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G------~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAK------LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA  598 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            356699999999999999999997      9999999999999999999999999999999999984       799999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY  187 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~  187 (272)
                      +..|+.+++++|++.++..+                                  ...+.++||.|+..|+.++++.|+++
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~----------------------------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~  644 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISD----------------------------------PHAAGDLLCTAAKRNDLTAMKELLKQ  644 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccC----------------------------------cccCchHHHHHHHhCCHHHHHHHHHC
Confidence            99999999999998654322                                  23567899999999999999999999


Q ss_pred             CCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCC-CcHHHHHHHc
Q psy11714        188 NIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD-ITPLILAAHM  249 (272)
Q Consensus       188 g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~A~~~  249 (272)
                      |+|+       +||||+|+..|+.+++++|+++|++++               ..+..| .||+.++...
T Consensus       645 Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~---------------~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        645 GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD---------------KANTDDDFSPTELRELL  699 (823)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC---------------CCCCCCCCCHHHHHHHH
Confidence            9998       599999999999999999999999999               566666 8898877543

>KOG0502|consensus

Probab=99.88  E-value=1.2e-22  Score=155.15  Aligned_cols=180  Identities=21%  Similarity=0.276  Sum_probs=134.8

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcC
Q psy11714         39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEE  111 (272)
Q Consensus        39 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~  111 (272)
                      +.-+...|+.+++.......+     --+...++.|.++++.++-.++...+..+|.+|...+       +|+.+++...
T Consensus        66 ~~~~~~s~nsd~~v~s~~~~~-----~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql  140 (296)
T KOG0502|consen   66 LTVAVRSGNSDVAVQSAQLDP-----DAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQL  140 (296)
T ss_pred             cchhhhcCCcHHHHHhhccCC-----CCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHH
Confidence            344555555555554444331     2223334456666666666666666666666655543       3556665555


Q ss_pred             cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc
Q psy11714        112 YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV  191 (272)
Q Consensus       112 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~  191 (272)
                      +.+.+-.+.+                                  ..+|.-|+.|.|||.||+.+|+.++|++|++.|+|+
T Consensus       141 ~L~~~~~~~~----------------------------------n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp  186 (296)
T KOG0502|consen  141 HLDVVDLLVN----------------------------------NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP  186 (296)
T ss_pred             HHHHHHHHhh----------------------------------ccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh
Confidence            5555555544                                  457788999999999999999999999999999999


Q ss_pred             -------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy11714        192 -------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT  264 (272)
Q Consensus       192 -------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~  264 (272)
                             .++|..|+..|+.++|++|+.++.|+|               ..|-.|.|||-+|++-++.++++.|+..||+
T Consensus       187 ~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN---------------vyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd  251 (296)
T KOG0502|consen  187 DALGKYRESALSLATRGGYTDIVELLLTREVDVN---------------VYDWNGGTPLLYAVRGNHVKCVESLLNSGAD  251 (296)
T ss_pred             hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc---------------eeccCCCceeeeeecCChHHHHHHHHhcCCC
Confidence                   589999999999999999999999999               6778899999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy11714        265 LPMPHDVR  272 (272)
Q Consensus       265 ~~~~~~~~  272 (272)
                      ++.-++++
T Consensus       252 ~t~e~dsG  259 (296)
T KOG0502|consen  252 VTQEDDSG  259 (296)
T ss_pred             cccccccC
Confidence            99888754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.3e-20  Score=168.33  Aligned_cols=206  Identities=13%  Similarity=0.124  Sum_probs=164.3

Q ss_pred             cChhhhHHHHHHHcC-------CHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCC---C
Q psy11714         32 LTPQEKRFLLVAERG-------DCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENE--NIELINILLEYNI---Q   99 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g-------~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~---~   99 (272)
                      ...+.++||+|+..+       +.++++.||+.|      ++++.+|..|.||||+|+.+.  +.+++++|++.--   +
T Consensus       172 ~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g------~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        172 DRMGKTVLYYYIITRSQDGYATSLDVINYLISHE------KEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC------CCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence            344678899999999       899999999998      999999999999999999999  7899999986311   0


Q ss_pred             -------------------h-----------------------------------------hhHHHHHHHcC--cHHHHH
Q psy11714        100 -------------------V-----------------------------------------KDALLHAIKEE--YVEAVE  117 (272)
Q Consensus       100 -------------------~-----------------------------------------~t~l~~A~~~~--~~~~~~  117 (272)
                                         +                                         +.-||.=...+  +.++++
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                               1                                         01344334444  678999


Q ss_pred             HHHccccccccCCCCccccCCcccHHHHHHhcCCC-------CccccccCCCCCC--CCHHHHHHHcCCH---HHHHHHH
Q psy11714        118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ-------PEVFNINCVDPLN--RSSLIAAIENENI---ELINILL  185 (272)
Q Consensus       118 ~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-------~~~~~~~~~d~~~--~t~L~~a~~~g~~---~~~~~Ll  185 (272)
                      +|+++|+++.        ......+++.|+..+..       ..|++++.+|..|  .||||+|+.....   +++++|+
T Consensus       326 ~LId~Ga~~~--------r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLI  397 (631)
T PHA02792        326 CMIDEGATLY--------RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCK  397 (631)
T ss_pred             HHHHCCCccc--------cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHH
Confidence            9999998764        12244567777655432       3378999988775  6999998876654   4688999


Q ss_pred             hCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHH----------
Q psy11714        186 EYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAH----------  248 (272)
Q Consensus       186 ~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~----------  248 (272)
                      ++|+++       .||||+|+..++.+++++|+++|++++               .++..|.|||++|+.          
T Consensus       398 s~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN---------------~kD~~G~TpL~~A~~~~~~~~~~i~  462 (631)
T PHA02792        398 PYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN---------------ITTKYGSTCIGICVILAHACIPEIA  462 (631)
T ss_pred             hcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC---------------CcCCCCCCHHHHHHHHHhcccHHHH
Confidence            999998       499999999999999999999999999               789999999999976          


Q ss_pred             cCCHHHHHHHHHCCCCCC
Q psy11714        249 MNNYEILKILLDRGATLP  266 (272)
Q Consensus       249 ~~~~~iv~~Ll~~ga~~~  266 (272)
                      ....+++++|+++|.++.
T Consensus       463 ~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        463 ELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHHHHhcCCChh
Confidence            223678999999998764

>KOG0505|consensus

Probab=99.86  E-value=2.8e-21  Score=165.06  Aligned_cols=204  Identities=22%  Similarity=0.256  Sum_probs=140.8

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~  108 (272)
                      ...+..|+..|+.+.+..++..|      +.+|..+.+|.|+||-|+.-.+.+||++|+++|++++       ||||.|+
T Consensus        41 sa~~l~A~~~~d~~ev~~ll~~g------a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaa  114 (527)
T KOG0505|consen   41 SAVFLEACSRGDLEEVRKLLNRG------ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAA  114 (527)
T ss_pred             hHHHHhccccccHHHHHHHhccC------CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhc
Confidence            44588899999999999999997      8889999999999999999999999999999999994       7999999


Q ss_pred             HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCC---HHHHHHHH
Q psy11714        109 KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN---IELINILL  185 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~---~~~~~~Ll  185 (272)
                      .+++..++++|+.+|+++-..      +..|..|.-.+........  -...++..|-+ +-.+-..-.   .+-+...+
T Consensus       115 scg~~~i~~~li~~gA~~~av------Nsdg~~P~dl~e~ea~~~~--l~~~~~r~gi~-iea~R~~~e~~ml~D~~q~l  185 (527)
T KOG0505|consen  115 SCGYLNIVEYLIQHGANLLAV------NSDGNMPYDLAEDEATLDV--LETEMARQGID-IEAARKAEEQTMLDDARQWL  185 (527)
T ss_pred             ccccHHHHHHHHHhhhhhhhc------cCCCCCccccccCcchhHH--HHHHHHHhccc-HHHHhhhhHHHHHHHHHHHH
Confidence            999999999999999988732      2223222222111000000  00000011111 111110000   11223333


Q ss_pred             hCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy11714        186 EYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKIL  258 (272)
Q Consensus       186 ~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  258 (272)
                      ..|.+.       .|.||.|+..|+.++.++|+..|.+++               .+|.+|.||||.|+.+|..+++++|
T Consensus       186 ~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~---------------~~D~dgWtPlHAAA~Wg~~~~~elL  250 (527)
T KOG0505|consen  186 NAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVN---------------IKDYDGWTPLHAAAHWGQEDACELL  250 (527)
T ss_pred             hccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcc---------------cccccCCCcccHHHHhhhHhHHHHH
Confidence            455444       477777888888888888888777777               6777778888888888888888888


Q ss_pred             HHCCCCCCCCC
Q psy11714        259 LDRGATLPMPH  269 (272)
Q Consensus       259 l~~ga~~~~~~  269 (272)
                      +++|++++...
T Consensus       251 ~~~ga~~d~~t  261 (527)
T KOG0505|consen  251 VEHGADMDAKT  261 (527)
T ss_pred             HHhhcccchhh
Confidence            88888777654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=9.3e-21  Score=146.05  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             ccCCCCCCCCHHHHHHHcCCHHH---HHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHh-cCccCCCCCCcch
Q psy11714        158 INCVDPLNRSSLIAAIENENIEL---INILLEYNIQV--------KDALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYS  225 (272)
Q Consensus       158 ~~~~d~~~~t~L~~a~~~g~~~~---~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~  225 (272)
                      ++.+|..|+||||+|+.+|+.++   +++|+++|+++        +||||+|+..++.+++++|+. .|++++       
T Consensus        50 ~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-------  122 (166)
T PHA02743         50 LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-------  122 (166)
T ss_pred             hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-------
Confidence            44678889999999999887554   78999999876        489999999999999999995 799998       


Q ss_pred             hhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy11714        226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD  270 (272)
Q Consensus       226 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~  270 (272)
                              .++..|.||||+|+..++.+++++|+++||+++.|+-
T Consensus       123 --------~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743        123 --------AINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             --------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence                    7889999999999999999999999999999999974

>KOG0507|consensus

Probab=99.85  E-value=4.4e-21  Score=169.47  Aligned_cols=214  Identities=21%  Similarity=0.171  Sum_probs=163.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCC-------CCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hh
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQ-------PEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KD  102 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~-------~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t  102 (272)
                      +.+..|+..|+.+.+..+|+..+-+       +.....|..|.+|.|.||.|+..|+..++++|+++.+-+       .+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            3477888888888888888753222       112456777788888888888888888888888876443       25


Q ss_pred             HHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCCCCCCCCHHHHHHHc
Q psy11714        103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCVDPLNRSSLIAAIEN  175 (272)
Q Consensus       103 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~d~~~~t~L~~a~~~  175 (272)
                      |||+|++.|+.+++++++.++..+|      ..+..+.||||.++..++...       +.+.-.++..+.|+|..|++.
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~n------a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf  158 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILN------AVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRF  158 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCC------cccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHh
Confidence            8888888888888888888775555      566778888888887655433       567777888888888888888


Q ss_pred             CCHHHHHHHHhCCCCc---------------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCC
Q psy11714        176 ENIELINILLEYNIQV---------------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI  240 (272)
Q Consensus       176 g~~~~~~~Ll~~g~~~---------------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  240 (272)
                      |..++++.|++...+.               -+|||.|+.+|+.++++.|++.|.++|.                -....
T Consensus       159 gr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~----------------~t~~g  222 (854)
T KOG0507|consen  159 GRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY----------------TTEDG  222 (854)
T ss_pred             hhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc----------------ccccc
Confidence            8888888888763222               2688888888888888888888888873                33567


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        241 TPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       241 t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      |+||.|+..|..++|++|++-|.+....+.|+
T Consensus       223 talheaalcgk~evvr~ll~~gin~h~~n~~~  254 (854)
T KOG0507|consen  223 TALHEAALCGKAEVVRFLLEIGINTHIKNQHG  254 (854)
T ss_pred             hhhhhHhhcCcchhhhHHHhhccccccccccc
Confidence            88998888888999999998888888887763

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.6e-19  Score=149.98  Aligned_cols=142  Identities=15%  Similarity=0.100  Sum_probs=115.6

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCC----CCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVD----PLNRSSLIAAIENENIELINILLEYNIQVK-------  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------  101 (272)
                      ......|+.|+..|+.++++.|++.|      +++|.++    ..|.||||+|+..++.+++++|+++|++++       
T Consensus        31 ~~~~~lL~~A~~~~~~eivk~LL~~G------AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         31 ICIANILYSSIKFHYTDIIDAILKLG------ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             CCCCHHHHHHHHcCCHHHHHHHHHCC------CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            34456789999999999999999998      9999874    589999999999999999999999999884       


Q ss_pred             -hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        102 -DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       102 -t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                       ||||+|+..++.+++++|+++|++++                                .+|..|.||||+|+..++.++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin--------------------------------~kd~~G~TpL~~A~~~~~~~~  152 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADIN--------------------------------IQTNDMVTPIELALMICNNFL  152 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCC--------------------------------CCCCCCCCHHHHHHHhCChhH
Confidence             69999999999999999999986655                                667777888888887777777


Q ss_pred             HHHHHhCCCCc--hhHHHHHHHcCCHHHHHHHHhcCc
Q psy11714        181 INILLEYNIQV--KDALLHAIKEEYVEAVEILLEWEE  215 (272)
Q Consensus       181 ~~~Ll~~g~~~--~t~l~~A~~~~~~~~~~~Ll~~g~  215 (272)
                      +..+...+.+.  .+|++++   ++.+++++|++++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        153 AFMICDNEISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             HHHhcCCcccccccChhhhh---ccHHHHHHHHHHHH
Confidence            76665544333  4566654   35777788887776

>KOG0507|consensus

Probab=99.82  E-value=4e-20  Score=163.48  Aligned_cols=199  Identities=20%  Similarity=0.132  Sum_probs=170.6

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      ..-+.||.|+..|+.++++.|++..      +.++.+|..|.+|||+|++.|+.+++++|+.++..+|       ||||.
T Consensus        48 ~gfTalhha~Lng~~~is~llle~e------a~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYE------ALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHL  121 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcch------hhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccch
Confidence            4457799999999999999999986      8888899999999999999999999999999986664       79999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc---------------cccccCCCCCCCCHHHH
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE---------------VFNINCVDPLNRSSLIA  171 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~---------------~~~~~~~d~~~~t~L~~  171 (272)
                      |++.++.+++.+|+.+|++..      ..+..+.|++-.|+..+....               ......++-.+.+|||.
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~------i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHl  195 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPF------IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHL  195 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCcc------ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcch
Confidence            999999999999999998876      788999999999988754322               11233455668899999


Q ss_pred             HHHcCCHHHHHHHHhCCCCc------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHH
Q psy11714        172 AIENENIELINILLEYNIQV------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL  245 (272)
Q Consensus       172 a~~~g~~~~~~~Ll~~g~~~------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~  245 (272)
                      |+.+|+.++++.|++.|.++      .|+||.|+..|..+++.+|++-|.+.+               .++..|.|+|.+
T Consensus       196 aakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~gin~h---------------~~n~~~qtaldi  260 (854)
T KOG0507|consen  196 AAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIGINTH---------------IKNQHGQTALDI  260 (854)
T ss_pred             hhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhccccc---------------cccccchHHHHH
Confidence            99999999999999999999      499999999999999999999999998               788999999987


Q ss_pred             HHHcC---CHHHHHHHH
Q psy11714        246 AAHMN---NYEILKILL  259 (272)
Q Consensus       246 A~~~~---~~~iv~~Ll  259 (272)
                      -....   ..+++-++.
T Consensus       261 l~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  261 IIDLQENRRYEIAGAVK  277 (854)
T ss_pred             HHhcchhhhhhhhhhhh
Confidence            76543   344444444

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=2.8e-19  Score=138.33  Aligned_cols=95  Identities=22%  Similarity=0.226  Sum_probs=78.9

Q ss_pred             ccccCCCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHh-cCccCCCCCC
Q psy11714        156 FNINCVDPLNRSSLIAAIENEN----IELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLE-WEEKIHVHGQ  222 (272)
Q Consensus       156 ~~~~~~d~~~~t~L~~a~~~g~----~~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~  222 (272)
                      .+++.+|..|.||||+|+..|+    .+++++|+++|+++        +||||+|+..++.+++++|++ .|++++    
T Consensus        51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~----  126 (169)
T PHA02741         51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH----  126 (169)
T ss_pred             hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----
Confidence            3455777788888888888887    47788888888776        478888888999999999997 588888    


Q ss_pred             cchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy11714        223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL  265 (272)
Q Consensus       223 ~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~  265 (272)
                                 .++..|.||||+|+..++.+++++|++.++..
T Consensus       127 -----------~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        127 -----------FCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             -----------cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                       67889999999999999999999999887654

>KOG0502|consensus

Probab=99.82  E-value=1.2e-20  Score=144.24  Aligned_cols=181  Identities=18%  Similarity=0.226  Sum_probs=152.1

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-----hhHHHHHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-----KDALLHAIK  109 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~t~l~~A~~  109 (272)
                      +-+.++-++-.|..+.++..|..+      ...|..+-.+.+|+.+++...+.+.+..+.+.-.+-     -|||.+|+.
T Consensus        96 g~~~~~v~ap~~s~~k~sttltN~------~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa  169 (296)
T KOG0502|consen   96 GWSALLVAAPCGSVDKVSTTLTNG------ARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAA  169 (296)
T ss_pred             hhhhhhhcCCCCCcceeeeeeccc------ccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHh
Confidence            445677888888888888888886      788888889999999999998988888877654332     389999999


Q ss_pred             cCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy11714        110 EEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI  189 (272)
Q Consensus       110 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~  189 (272)
                      +|+.++|++|++.|++++                                ...++..++|.+|++.|-.+||++|++++.
T Consensus       170 ~G~i~vV~fLL~~GAdp~--------------------------------~lgk~resALsLAt~ggytdiV~lLL~r~v  217 (296)
T KOG0502|consen  170 KGHIPVVQFLLNSGADPD--------------------------------ALGKYRESALSLATRGGYTDIVELLLTREV  217 (296)
T ss_pred             cCchHHHHHHHHcCCChh--------------------------------hhhhhhhhhHhHHhcCChHHHHHHHHhcCC
Confidence            999999999999887665                                445677789999999999999999999998


Q ss_pred             Cc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy11714        190 QV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG  262 (272)
Q Consensus       190 ~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~g  262 (272)
                      |+       .|||.+|++.++..+++.|+..|++++               ..+..|.+++.+|+..|+. +|+..+++-
T Consensus       218 dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t---------------~e~dsGy~~mdlAValGyr-~Vqqvie~h  281 (296)
T KOG0502|consen  218 DVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT---------------QEDDSGYWIMDLAVALGYR-IVQQVIEKH  281 (296)
T ss_pred             CcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc---------------cccccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence            88       399999999999999999999999998               6788899999999999976 888888877


Q ss_pred             CCCCCCC
Q psy11714        263 ATLPMPH  269 (272)
Q Consensus       263 a~~~~~~  269 (272)
                      +.++.++
T Consensus       282 ~lkl~Q~  288 (296)
T KOG0502|consen  282 ALKLCQD  288 (296)
T ss_pred             HHHHhhc
Confidence            7665544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=2.6e-19  Score=138.02  Aligned_cols=122  Identities=12%  Similarity=0.139  Sum_probs=76.1

Q ss_pred             ChhhhHHHHHHHcCCHHH----HHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHH---HHHHHHCCCChh----
Q psy11714         33 TPQEKRFLLVAERGDCAT----VRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL---INILLEYNIQVK----  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~----~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~g~~~~----  101 (272)
                      ......|+.|++.|+++.    ++.|++.+      ..++..|..|+||||+|+..|+.+.   +++|+++|++++    
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g------~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~   91 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDG------HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAREL   91 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcc------hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCC
Confidence            344556788888888743    33445554      6677777788888888887776543   566666666552    


Q ss_pred             ----hHHHHHHHcCcHHHHHHHHc-cccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcC
Q psy11714        102 ----DALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE  176 (272)
Q Consensus       102 ----t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g  176 (272)
                          ||||+|+..++.+++++|++ .|++                                ++.++..|.||||+|+..+
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad--------------------------------~~~~d~~g~tpL~~A~~~~  139 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCRQLGVN--------------------------------LGAINYQHETAYHIAYKMR  139 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccCCC--------------------------------ccCcCCCCCCHHHHHHHcC
Confidence                56666666666666666663 4433                                3345556666666666666


Q ss_pred             CHHHHHHHHhCCCCch
Q psy11714        177 NIELINILLEYNIQVK  192 (272)
Q Consensus       177 ~~~~~~~Ll~~g~~~~  192 (272)
                      +.+++++|+++|++++
T Consensus       140 ~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743        140 DRRMMEILRANGAVCD  155 (166)
T ss_pred             CHHHHHHHHHcCCCCC
Confidence            6666666666665553

>KOG3676|consensus

Probab=99.81  E-value=3.3e-19  Score=159.33  Aligned_cols=199  Identities=21%  Similarity=0.263  Sum_probs=160.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCC---CCCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCh----------
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQ---PEVFNINCVDPLNRSSLIAAIEN---ENIELINILLEYNIQV----------  100 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~---~~~~~~n~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~----------  100 (272)
                      ..+..+...+.++....++..+...   .-..+++.+...|.|.||.|..+   ++.+++..|++.-..+          
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5577788888888887777765211   11267788888999999999984   5679999999854333          


Q ss_pred             --hhHHHHHHHcCcHHHHHHHHccccccccC--CCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcC
Q psy11714        101 --KDALLHAIKEEYVEAVEILLEWEEKIHVH--GQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE  176 (272)
Q Consensus       101 --~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g  176 (272)
                        .||||+|+.+.+.++|++|++.|||++++  |..+.++..+.+-           +.++..-.-..|+.||.+|+..+
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~r-----------k~T~Y~G~~YfGEyPLSfAAC~n  251 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASR-----------KSTNYTGYFYFGEYPLSFAACTN  251 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccc-----------cccCCcceeeeccCchHHHHHcC
Confidence              48999999999999999999999999964  4444444332111           11233233457999999999999


Q ss_pred             CHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCcc--CCCCCCcchhhhhhcCCCCCCCCCcHHHHHH
Q psy11714        177 NIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEK--IHVHGQPYSWEAVDRSSSTFTPDITPLILAA  247 (272)
Q Consensus       177 ~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  247 (272)
                      +++|+++|+++|||+       ||.||..+.....+|.++++++|++  ..               ..|.+|.|||.+|+
T Consensus       252 q~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~---------------v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  252 QPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEH---------------VRNNQGLTPLTLAA  316 (782)
T ss_pred             CHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccc---------------ccccCCCChHHHHH
Confidence            999999999999999       7999999999999999999999998  54               78899999999999


Q ss_pred             HcCCHHHHHHHHHC
Q psy11714        248 HMNNYEILKILLDR  261 (272)
Q Consensus       248 ~~~~~~iv~~Ll~~  261 (272)
                      +.|+.+|++.+++.
T Consensus       317 klGk~emf~~ile~  330 (782)
T KOG3676|consen  317 KLGKKEMFQHILER  330 (782)
T ss_pred             HhhhHHHHHHHHHh
Confidence            99999999999998

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=6.2e-19  Score=146.48  Aligned_cols=140  Identities=16%  Similarity=0.206  Sum_probs=115.0

Q ss_pred             cCCCCCCc-HHHHHHHcCCHHHHHHHHHCCCChhh-----------HHHHHHHcCcHHHHHHHHccccccccCCCCcccc
Q psy11714         69 CVDPLNRS-SLIAAIENENIELINILLEYNIQVKD-----------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSE  136 (272)
Q Consensus        69 ~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~t-----------~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  136 (272)
                      .+|..|.| +|+.|+..|+.+++++|+++|++++.           |||+|+..++.+++++|+++|++++         
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN---------   97 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN---------   97 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC---------
Confidence            36677775 56667777899999999999999999           7999999999999999999886655         


Q ss_pred             CCcccHHHHHHhcCCCCccccccCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHH
Q psy11714        137 NKGRTIFMMLDELKDQPEVFNINCV-DPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVE  208 (272)
Q Consensus       137 ~~~~t~l~~~~~~~~~~~~~~~~~~-d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~  208 (272)
                                             .+ +..|.||||+|+..|+.+++++|+++|+++       .||||+|+..++.+++.
T Consensus        98 -----------------------~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~  154 (300)
T PHA02884         98 -----------------------RYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAF  154 (300)
T ss_pred             -----------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHH
Confidence                                   54 457999999999999999999999999998       49999999988888876


Q ss_pred             HHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy11714        209 ILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA  263 (272)
Q Consensus       209 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga  263 (272)
                      ++...  .                  .+..+.+|++.+   ++.+++++|++|++
T Consensus       155 ~~~~~--~------------------~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        155 MICDN--E------------------ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             HhcCC--c------------------ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            55432  2                  234567888865   36899999999988

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=2.1e-19  Score=136.98  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=84.2

Q ss_pred             CCCCCCCCHHHHHHHcCCH---HHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHh-cCccCCCCCCcchhh
Q psy11714        160 CVDPLNRSSLIAAIENENI---ELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYSWE  227 (272)
Q Consensus       160 ~~d~~~~t~L~~a~~~g~~---~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~  227 (272)
                      .+|..|.||||+|+..|..   +++++|++.|+++        +||||+|+..++.+++++|+. .|++++         
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n---------  120 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME---------  120 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc---------
Confidence            4567899999999999886   4689999999887        599999999999999999998 499998         


Q ss_pred             hhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy11714        228 AVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPM  267 (272)
Q Consensus       228 ~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~  267 (272)
                            .++..|.||||+|+..++.+++++|+++||+++.
T Consensus       121 ------~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736        121 ------ILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             ------cccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence                  7889999999999999999999999999999863

>KOG0512|consensus

Probab=99.79  E-value=1.4e-18  Score=128.42  Aligned_cols=103  Identities=19%  Similarity=0.181  Sum_probs=89.4

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~  108 (272)
                      ...+.+|+..+.+..|+.||+..     .-.+|.+|.+|+||||-|+..||.+||..|+..|++++       ||||.||
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~-----an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAc  138 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEK-----ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSAC  138 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhc-----cccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhh
Confidence            45588999999999999999987     36799999999999999999999999999999999994       7999999


Q ss_pred             HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhc
Q psy11714        109 KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDEL  149 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~  149 (272)
                      ..++.+++-+|+++|++++      ....+..||||+++..
T Consensus       139 kWnN~~va~~LLqhgaDVn------A~t~g~ltpLhlaa~~  173 (228)
T KOG0512|consen  139 KWNNFEVAGRLLQHGADVN------AQTKGLLTPLHLAAGN  173 (228)
T ss_pred             cccchhHHHHHHhccCccc------ccccccchhhHHhhcc
Confidence            9999999999999998887      3445555555555543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.78  E-value=1.3e-18  Score=163.84  Aligned_cols=169  Identities=21%  Similarity=0.168  Sum_probs=139.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC--CCChh-------hHHH-HHHHcCcHHHHHHHHccccccccCCCCccccCCcccH
Q psy11714         73 LNRSSLIAAIENENIELINILLEY--NIQVK-------DALL-HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTI  142 (272)
Q Consensus        73 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~-------t~l~-~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~  142 (272)
                      .+...|+.|+..|+.+.++.+++.  +.+++       |||| .|+..++.+++++|+++|+          ++..|.||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----------~~~~G~T~   85 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----------RGAVGDTL   85 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----------CCCcChHH
Confidence            456899999999999999999998  77775       7999 8888899999999999774          46689999


Q ss_pred             HHHHHhcCC--CCc--------ccc------c----cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-----------
Q psy11714        143 FMMLDELKD--QPE--------VFN------I----NCVDPLNRSSLIAAIENENIELINILLEYNIQV-----------  191 (272)
Q Consensus       143 l~~~~~~~~--~~~--------~~~------~----~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-----------  191 (272)
                      ||.|+....  ...        ..+      .    ......|.||||+|+..|+.+++++|+++|+++           
T Consensus        86 Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~  165 (743)
T TIGR00870        86 LHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK  165 (743)
T ss_pred             HHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc
Confidence            999987311  100        000      1    112346999999999999999999999999887           


Q ss_pred             ----------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcC---------CH
Q psy11714        192 ----------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN---------NY  252 (272)
Q Consensus       192 ----------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~---------~~  252 (272)
                                .+||+.|+..++.+++++|+++|++++               .+|..|.||||+|+..+         ..
T Consensus       166 ~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin---------------~~d~~g~T~Lh~A~~~~~~~~~~~~l~~  230 (743)
T TIGR00870       166 SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL---------------TADSLGNTLLHLLVMENEFKAEYEELSC  230 (743)
T ss_pred             CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh---------------hHhhhhhHHHHHHHhhhhhhHHHHHHHH
Confidence                      379999999999999999999999998               78889999999999886         34


Q ss_pred             HHHHHHHHCCCCCC
Q psy11714        253 EILKILLDRGATLP  266 (272)
Q Consensus       253 ~iv~~Ll~~ga~~~  266 (272)
                      .+.+++++.+++..
T Consensus       231 ~~~~~l~~ll~~~~  244 (743)
T TIGR00870       231 QMYNFALSLLDKLR  244 (743)
T ss_pred             HHHHHHHHHHhccC
Confidence            57778887777653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=2.2e-18  Score=118.95  Aligned_cols=86  Identities=35%  Similarity=0.439  Sum_probs=80.1

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCch---hHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHH
Q psy11714        169 LIAAIENENIELINILLEYNIQVK---DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL  245 (272)
Q Consensus       169 L~~a~~~g~~~~~~~Ll~~g~~~~---t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~  245 (272)
                      ||+|+..|+.+++++|++.+.+++   ||||+|+..|+.+++++|+++|++++               .++..|.||||+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~~~~---------------~~~~~g~t~L~~   65 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINLGNTALHYAAENGNLEIVKLLLENGADIN---------------SQDKNGNTALHY   65 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTSSSBHHHHHHHTTTHHHHHHHHHTTTCTT----------------BSTTSSBHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhccccc---------------ccCCCCCCHHHH
Confidence            799999999999999999998885   99999999999999999999999999               778899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCC
Q psy11714        246 AAHMNNYEILKILLDRGATLPMPH  269 (272)
Q Consensus       246 A~~~~~~~iv~~Ll~~ga~~~~~~  269 (272)
                      |+.+++.+++++|+++|++++..|
T Consensus        66 A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   66 AAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcC
Confidence            999999999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514|consensus

Probab=99.77  E-value=1.4e-18  Score=142.17  Aligned_cols=149  Identities=23%  Similarity=0.309  Sum_probs=117.8

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-Ch-------hhHHHHHHHc-----CcHHHHHHHHccccccccCCC
Q psy11714         65 FNINCVDPLNRSSLIAAIENENIELINILLEYNI-QV-------KDALLHAIKE-----EYVEAVEILLEWEEKIHVHGQ  131 (272)
Q Consensus        65 ~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~-------~t~l~~A~~~-----~~~~~~~~Ll~~g~~~~~~~~  131 (272)
                      +-+|..|.+|.|+|||++.++++++|+.||+.|. ++       .||+++++..     .+.++|+-|...         
T Consensus       259 yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---------  329 (452)
T KOG0514|consen  259 YVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM---------  329 (452)
T ss_pred             HHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc---------
Confidence            3456777777777777777777777777777764 33       1455555332     234455555443         


Q ss_pred             CccccCCcccHHHHHHhcCCCCccccccCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCC
Q psy11714        132 PYVSENKGRTIFMMLDELKDQPEVFNINCVD-PLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEY  203 (272)
Q Consensus       132 ~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d-~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~  203 (272)
                                              .++|.+. ..|.|+|.+|+..|+.++++.|+.+|+|+       .|+|++|+.+|+
T Consensus       330 ------------------------gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGh  385 (452)
T KOG0514|consen  330 ------------------------GDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGH  385 (452)
T ss_pred             ------------------------cCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhCh
Confidence                                    4667765 47999999999999999999999999999       499999999999


Q ss_pred             HHHHHHHHhc-CccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        204 VEAVEILLEW-EEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       204 ~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                      .|++++|+.. ++|+.               ..|..|-|+|.+|...|+.+|.-+|+.+
T Consensus       386 kEivklLLA~p~cd~s---------------LtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  386 KEIVKLLLAVPSCDIS---------------LTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHHHHHhccCcccce---------------eecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999974 67776               6788999999999999999999999976

>PHA02741 hypothetical protein; Provisional

Probab=99.77  E-value=5.7e-18  Score=131.02  Aligned_cols=125  Identities=21%  Similarity=0.241  Sum_probs=93.0

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCC----HHHHHHHHHCCCChh-------
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN----IELINILLEYNIQVK-------  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~-------  101 (272)
                      ....++||+|++.|+.++++.++........+++++.+|..|.||||+|+..|+    .+++++|+++|++++       
T Consensus        19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g   98 (169)
T PHA02741         19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG   98 (169)
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence            345677889999999988888754210000026788888888899999888888    578888888887763       


Q ss_pred             -hHHHHHHHcCcHHHHHHHHc-cccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHH
Q psy11714        102 -DALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIE  179 (272)
Q Consensus       102 -t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~  179 (272)
                       ||||+|+..++.+++++|+. .|+                                +++.+|..|.||||+|+..++.+
T Consensus        99 ~TpLh~A~~~~~~~iv~~Ll~~~g~--------------------------------~~~~~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741         99 DTALHLAAHRRDHDLAEWLCCQPGI--------------------------------DLHFCNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCC--------------------------------CCCcCCCCCCCHHHHHHHCCCHH
Confidence             68888888888888888886 354                                34466778888888888888888


Q ss_pred             HHHHHHhCCC
Q psy11714        180 LINILLEYNI  189 (272)
Q Consensus       180 ~~~~Ll~~g~  189 (272)
                      ++++|+++++
T Consensus       147 iv~~L~~~~~  156 (169)
T PHA02741        147 MMQILREIVA  156 (169)
T ss_pred             HHHHHHHHHH
Confidence            8888877543

>KOG4369|consensus

Probab=99.77  E-value=2.4e-19  Score=163.76  Aligned_cols=206  Identities=20%  Similarity=0.155  Sum_probs=168.0

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------hHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK--------DALLHA  107 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~l~~A  107 (272)
                      ...|-.|+..|+-+.+..|+.+|      +++..+|+.|.+||..|+..||..+|+.|+.+.+++.        |+|.+|
T Consensus       758 ~t~LT~acaggh~e~vellv~rg------aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRG------ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhc------ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence            45688999999999999999998      9999999999999999999999999999999999883        689999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCC--CCCCCHHHHHHHcCCH
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVD--PLNRSSLIAAIENENI  178 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d--~~~~t~L~~a~~~g~~  178 (272)
                      |..|+.++|++||.+|++=.      .++-...|||-++..-+.+.       .|..+|.+.  +.|-.||.+|...|+.
T Consensus       832 csggr~~vvelLl~~ganke------hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~  905 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKE------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ  905 (2131)
T ss_pred             cCCCcchHHHHHHHhhcccc------ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc
Confidence            99999999999999888755      45666777777766544332       244455543  4677888888888888


Q ss_pred             HHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcC
Q psy11714        179 ELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN  250 (272)
Q Consensus       179 ~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  250 (272)
                      +.++.|++.|-|+        +|+|-.|+..|+.+++.+|+...+++.               .+.+.|.|||+-++..|
T Consensus       906 ~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anve---------------hRaktgltplme~AsgG  970 (2131)
T KOG4369|consen  906 AATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVE---------------HRAKTGLTPLMEMASGG  970 (2131)
T ss_pred             HHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhh---------------hhcccCCcccchhhcCC
Confidence            8888888888776        578888888888888888888777776               56677888888888888


Q ss_pred             CHHHHHHHHHCCCCCCCC
Q psy11714        251 NYEILKILLDRGATLPMP  268 (272)
Q Consensus       251 ~~~iv~~Ll~~ga~~~~~  268 (272)
                      ..++=++|+..|||.|+.
T Consensus       971 yvdvg~~li~~gad~nas  988 (2131)
T KOG4369|consen  971 YVDVGNLLIAAGADTNAS  988 (2131)
T ss_pred             ccccchhhhhcccccccC
Confidence            888888888888887764

>KOG4369|consensus

Probab=99.76  E-value=4.8e-19  Score=161.77  Aligned_cols=225  Identities=18%  Similarity=0.212  Sum_probs=188.7

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hhHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCV-DPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHA  107 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l~~A  107 (272)
                      -.+|..|+-.|+..+|+-|++..      +++... |.++.|+|.+||..|+.++|++||.+|++-       .|||..|
T Consensus       791 f~plImaatagh~tvV~~llk~h------a~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla  864 (2131)
T KOG4369|consen  791 FVPLIMAATAGHITVVQDLLKAH------ADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLA  864 (2131)
T ss_pred             chhhhhhcccCchHHHHHHHhhh------hhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhh
Confidence            34588999999999999999986      777654 558899999999999999999999999876       2799999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCC-CCCCCCHHHHHHHcCCHH
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCV-DPLNRSSLIAAIENENIE  179 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~-d~~~~t~L~~a~~~g~~~  179 (272)
                      ...|..++++.|+.+|+.|+.+    .-...|.+||+++.-+++.+.       +.++|.. ..+.+|+|-+|+..|..+
T Consensus       865 ~Sggy~~iI~~llS~GseInSr----tgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~e  940 (2131)
T KOG4369|consen  865 RSGGYTKIIHALLSSGSEINSR----TGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPE  940 (2131)
T ss_pred             cCcchHHHHHHHhhcccccccc----cccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcch
Confidence            9999999999999999988832    123678999999988866433       6777764 467889999999999999


Q ss_pred             HHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhh-------------hh-------cC
Q psy11714        180 LINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA-------------VD-------RS  232 (272)
Q Consensus       180 ~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~-------------~~-------~~  232 (272)
                      ++.+||.+.+++       -|||+-++..|.+++-++||..|+|.+..-.+.-|..             +.       -.
T Consensus       941 vv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv 1020 (2131)
T KOG4369|consen  941 VVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATV 1020 (2131)
T ss_pred             HHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccce
Confidence            999999999888       3899999999999999999999999985322222211             11       13


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy11714        233 SSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD  270 (272)
Q Consensus       233 ~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~  270 (272)
                      +-+++.|.|+|.+|+.-|++..+.+|++++||++..|-
T Consensus      1021 ~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdn 1058 (2131)
T KOG4369|consen 1021 RVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDN 1058 (2131)
T ss_pred             ecccCCCCcccchhccCCccccchHHhhcccChhhhhc
Confidence            45688999999999999999999999999999998763

>KOG0505|consensus

Probab=99.75  E-value=2.5e-18  Score=147.13  Aligned_cols=192  Identities=16%  Similarity=0.138  Sum_probs=147.2

Q ss_pred             hhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------h
Q psy11714         29 EVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------K  101 (272)
Q Consensus        29 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~  101 (272)
                      .....+..+.||.++...+.++|+++++.|      +++|..|+.|+||||.|+..||..++++|+++|+++       +
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~g------a~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~  140 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENG------ANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGN  140 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhc------CCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCC
Confidence            344556778899999999999999999998      999999999999999999999999999999999887       2


Q ss_pred             hHHHHHHHcCcHHHHHHHH-ccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        102 DALLHAIKEEYVEAVEILL-EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      .|...+-..-..++...-. ..|+++++     .+.....+.|+-+..+..  .|...+..+..|.|+||.|+..|-.++
T Consensus       141 ~P~dl~e~ea~~~~l~~~~~r~gi~iea-----~R~~~e~~ml~D~~q~l~--~G~~~d~~~~rG~T~lHvAaa~Gy~e~  213 (527)
T KOG0505|consen  141 MPYDLAEDEATLDVLETEMARQGIDIEA-----ARKAEEQTMLDDARQWLN--AGAELDARHARGATALHVAAANGYTEV  213 (527)
T ss_pred             CccccccCcchhHHHHHHHHHhcccHHH-----HhhhhHHHHHHHHHHHHh--ccccccccccccchHHHHHHhhhHHHH
Confidence            3444333222222222211 12222221     122233344444333322  355666777779999999999999999


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHH
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAH  248 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  248 (272)
                      .++|+++|.++       +||||.|+..|..+++++|+++|++.+               .....|.||+.+|..
T Consensus       214 ~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d---------------~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  214 AALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMD---------------AKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccc---------------hhhhcCCCCccchhh
Confidence            99999999888       699999999999999999999999999               778889999998865

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=4.4e-18  Score=129.74  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=93.1

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC--------------CChhhHHHHHHHcCcH---HHHHHHHcccccccc
Q psy11714         66 NINCVDPLNRSSLIAAIENENIELINILLEYN--------------IQVKDALLHAIKEEYV---EAVEILLEWEEKIHV  128 (272)
Q Consensus        66 ~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--------------~~~~t~l~~A~~~~~~---~~~~~Ll~~g~~~~~  128 (272)
                      ..+.+|..|.||||+|+..|+.  ++++...+              .+-.||||+|+..++.   +++++|+++|++++ 
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin-   85 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN-   85 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc-
Confidence            3456778899999999999983  33332221              1124799999988876   46888999876544 


Q ss_pred             CCCCccccCCcccHHHHHHhcCCCCccccccCCC-CCCCCHHHHHHHcCCHHHHHHHHh-CCCCc-------hhHHHHHH
Q psy11714        129 HGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD-PLNRSSLIAAIENENIELINILLE-YNIQV-------KDALLHAI  199 (272)
Q Consensus       129 ~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d-~~~~t~L~~a~~~g~~~~~~~Ll~-~g~~~-------~t~l~~A~  199 (272)
                                                     .++ ..|.||||+|+..|+.+++++|+. .|+++       .||||+|+
T Consensus        86 -------------------------------~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~  134 (154)
T PHA02736         86 -------------------------------GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC  134 (154)
T ss_pred             -------------------------------ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH
Confidence                                           666 489999999999999999999997 48887       58999999


Q ss_pred             HcCCHHHHHHHHhcCccCC
Q psy11714        200 KEEYVEAVEILLEWEEKIH  218 (272)
Q Consensus       200 ~~~~~~~~~~Ll~~g~~~~  218 (272)
                      ..++.+++++|+.+|++.+
T Consensus       135 ~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        135 ERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HcCCHHHHHHHHHcCCCCC
Confidence            9999999999999998765

>KOG0514|consensus

Probab=99.71  E-value=6e-17  Score=132.66  Aligned_cols=148  Identities=18%  Similarity=0.243  Sum_probs=130.0

Q ss_pred             hhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCC-Ch--
Q psy11714         29 EVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIEN-----ENIELINILLEYNI-QV--  100 (272)
Q Consensus        29 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~g~-~~--  100 (272)
                      ....+.+.+.|||++.-+|+++|+.||+.|     -+++|..+.-|+||+++++..     .+.++|..|.+-|- +.  
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSg-----vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKA  336 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSG-----VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKA  336 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccC-----cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhh
Confidence            355677888999999999999999999999     499999999999999998864     46788998887752 22  


Q ss_pred             ----hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcC
Q psy11714        101 ----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE  176 (272)
Q Consensus       101 ----~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g  176 (272)
                          +|+|++|+..|+.++|+.||..|+++                                |.+|.+|.|+|.+|+..|
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdV--------------------------------NiQDdDGSTALMCA~EHG  384 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADV--------------------------------NIQDDDGSTALMCAAEHG  384 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCC--------------------------------ccccCCccHHHhhhhhhC
Confidence                48999999999999999999987654                                588999999999999999


Q ss_pred             CHHHHHHHHh-CCCCc-------hhHHHHHHHcCCHHHHHHHHhc
Q psy11714        177 NIELINILLE-YNIQV-------KDALLHAIKEEYVEAVEILLEW  213 (272)
Q Consensus       177 ~~~~~~~Ll~-~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~  213 (272)
                      +.+|+++|+. .++|+       .|+|.+|-..|+.++.-+|..+
T Consensus       385 hkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  385 HKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999997 46777       5999999999999999998876

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=3.1e-16  Score=108.08  Aligned_cols=46  Identities=35%  Similarity=0.449  Sum_probs=23.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCChh---hHHHHHHHcCcHHHHHHHHccc
Q psy11714         78 LIAAIENENIELINILLEYNIQVK---DALLHAIKEEYVEAVEILLEWE  123 (272)
Q Consensus        78 L~~A~~~~~~~~v~~Ll~~g~~~~---t~l~~A~~~~~~~~~~~Ll~~g  123 (272)
                      ||+|+..|+.+++++|++.|.+++   ||||+|+..|+.+++++|+++|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g   49 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINLGNTALHYAAENGNLEIVKLLLENG   49 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTSSSBHHHHHHHTTTHHHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            344555555555555555444443   4555555555555555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.66  E-value=7.9e-17  Score=128.38  Aligned_cols=140  Identities=20%  Similarity=0.168  Sum_probs=113.4

Q ss_pred             HHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHH
Q psy11714         42 VAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVE  114 (272)
Q Consensus        42 a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~  114 (272)
                      -++.|+.-.|+.+|+..     .-++|.-|..|.+|||+|+..||..+++.|+..|+.+|       ||||.|+..|+.+
T Consensus         7 wcregna~qvrlwld~t-----ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDT-----EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhhcCCeEEEEEEecCc-----ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHH
Confidence            34556655666667665     27888899999999999999999999999999999995       7999999999999


Q ss_pred             HHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---
Q psy11714        115 AVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV---  191 (272)
Q Consensus       115 ~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~---  191 (272)
                      +|..|++..+                                ++|..++.|+||||+||+.|...+++-|++.|+-+   
T Consensus        82 ivqkll~~ka--------------------------------dvnavnehgntplhyacfwgydqiaedli~~ga~v~ic  129 (448)
T KOG0195|consen   82 IVQKLLSRKA--------------------------------DVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNIC  129 (448)
T ss_pred             HHHHHHHHhc--------------------------------ccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeec
Confidence            9999999764                                45688899999999999999999999999999887   


Q ss_pred             ----hhHHHHHHHcCCHHHHHHHHhcCccCC
Q psy11714        192 ----KDALLHAIKEEYVEAVEILLEWEEKIH  218 (272)
Q Consensus       192 ----~t~l~~A~~~~~~~~~~~Ll~~g~~~~  218 (272)
                          .|||..|.-.-...+.+..-++|.+++
T Consensus       130 nk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  130 NKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             ccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence                377776643323333344445677765

>KOG0195|consensus

Probab=99.64  E-value=5.2e-16  Score=123.76  Aligned_cols=102  Identities=21%  Similarity=0.224  Sum_probs=96.5

Q ss_pred             ccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhh
Q psy11714        156 FNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA  228 (272)
Q Consensus       156 ~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  228 (272)
                      .+.|.-|..|.+|||||++.|+..+++.|+.+|+-+       .||||.|+.+|+.++|+.|+++.+|+|          
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvn----------   94 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN----------   94 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccc----------
Confidence            577888999999999999999999999999999888       499999999999999999999999999          


Q ss_pred             hhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        229 VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       229 ~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                           ..+..|.||||+||-.|.-.+++=|+..||.++.-|+|+
T Consensus        95 -----avnehgntplhyacfwgydqiaedli~~ga~v~icnk~g  133 (448)
T KOG0195|consen   95 -----AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKG  133 (448)
T ss_pred             -----hhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCC
Confidence                 789999999999999999999999999999999988875

>KOG3676|consensus

Probab=99.62  E-value=1.1e-14  Score=130.79  Aligned_cols=181  Identities=20%  Similarity=0.131  Sum_probs=136.6

Q ss_pred             ChhhhHHHHHHH---cCCHHHHHHHHHccCCCCCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------
Q psy11714         33 TPQEKRFLLVAE---RGDCATVRKMLDELKDQPEVFNINC-VDPLNRSSLIAAIENENIELINILLEYNIQVK-------  101 (272)
Q Consensus        33 ~~~~~~l~~a~~---~g~~~~~~~ll~~~~~~~~~~~~n~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------  101 (272)
                      ..+++.||.|..   .+.-+++..||+..++..  -++-. ....|.||||.|+.+.+.++|.+|++.|+|++       
T Consensus       141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~li--nd~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F  218 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLI--NDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF  218 (782)
T ss_pred             chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHh--hhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc
Confidence            446788998877   345578899998764221  11112 23479999999999999999999999999993       


Q ss_pred             -----------------------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccc
Q psy11714        102 -----------------------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNI  158 (272)
Q Consensus       102 -----------------------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~  158 (272)
                                             .||.+|+..++.+++++|+++|||                                +
T Consensus       219 F~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd--------------------------------~  266 (782)
T KOG3676|consen  219 FCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD--------------------------------P  266 (782)
T ss_pred             cCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC--------------------------------C
Confidence                                   299999999999999999998755                                5


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--c-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhh
Q psy11714        159 NCVDPLNRSSLIAAIENENIELINILLEYNIQ--V-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV  229 (272)
Q Consensus       159 ~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~--~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  229 (272)
                      +.+|+.|+|.||..+..-..++..+++++|++  .       -|||..|+..|..++++.+++.....+-.-.|...++.
T Consensus       267 ~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslY  346 (782)
T KOG3676|consen  267 NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLY  346 (782)
T ss_pred             CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccc
Confidence            58999999999999999889999999999999  3       39999999999999999999985444322333333333


Q ss_pred             hcCCCCCC-CCCcHHHHHH
Q psy11714        230 DRSSSTFT-PDITPLILAA  247 (272)
Q Consensus       230 ~~~~~~~~-~g~t~l~~A~  247 (272)
                      +....... +..+.|.+.+
T Consensus       347 pL~~iDT~~n~~SvLeivv  365 (782)
T KOG3676|consen  347 PLNSIDTIGNENSVLEIVV  365 (782)
T ss_pred             cchhcccccchhhhhhhhh
Confidence            33222211 3445555554

>KOG0512|consensus

Probab=99.61  E-value=5.6e-15  Score=109.43  Aligned_cols=127  Identities=19%  Similarity=0.117  Sum_probs=101.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCh-h-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHh
Q psy11714         77 SLIAAIENENIELINILLEYNIQV-K-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDE  148 (272)
Q Consensus        77 ~L~~A~~~~~~~~v~~Ll~~g~~~-~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~  148 (272)
                      .+.+|+..+...-|+.||+..++. |       ||||.|+.+|+.+|++.|+..|++                       
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-----------------------  122 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-----------------------  122 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-----------------------
Confidence            466788889999999999887766 2       799999999999999999887755                       


Q ss_pred             cCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHH-HHHHH-hcCccCCC
Q psy11714        149 LKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEA-VEILL-EWEEKIHV  219 (272)
Q Consensus       149 ~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~-~~~Ll-~~g~~~~~  219 (272)
                               .+.+...|.||||.||..++.+++-.|+++|+|+       .||||.|+...+... +.+|+ ..+.++. 
T Consensus       123 ---------~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg-  192 (228)
T KOG0512|consen  123 ---------KEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG-  192 (228)
T ss_pred             ---------cccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh-
Confidence                     4477888999999999999999999999999999       489999987776544 44444 4555554 


Q ss_pred             CCCcchhhhhhcCCCCCCCCCcHHHHHHHcC
Q psy11714        220 HGQPYSWEAVDRSSSTFTPDITPLILAAHMN  250 (272)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  250 (272)
                                    .++..+.||+.+|-+.+
T Consensus       193 --------------~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  193 --------------LKNNLEETAFDIARRTS  209 (228)
T ss_pred             --------------hhcCccchHHHHHHHhh
Confidence                          56777899999987654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.59  E-value=4.5e-14  Score=102.85  Aligned_cols=81  Identities=26%  Similarity=0.397  Sum_probs=36.6

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~  108 (272)
                      .++|+.|+..|+.+.++.+++.+      .+.+.++..|.|||++|+..++.+++++|++.|++++       ||+|+|+
T Consensus         8 ~t~l~~a~~~~~~~~i~~li~~~------~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           8 RTPLHLAASNGHLEVVKLLLENG------ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcC------CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            34444444444444444444443      3334444444444444444444444444444443221       3444444


Q ss_pred             HcCcHHHHHHHHcc
Q psy11714        109 KEEYVEAVEILLEW  122 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~  122 (272)
                      ..++.+++++|+++
T Consensus        82 ~~~~~~~~~~L~~~   95 (126)
T cd00204          82 RNGNLDVVKLLLKH   95 (126)
T ss_pred             HcCcHHHHHHHHHc
Confidence            44444444444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.58  E-value=4.6e-14  Score=102.80  Aligned_cols=85  Identities=29%  Similarity=0.424  Sum_probs=73.4

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcC
Q psy11714        160 CVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRS  232 (272)
Q Consensus       160 ~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  232 (272)
                      ..+..|.+|+|.|+..+..+++++|+..|+++       .||+|+|+..++.+++++|+++|.+++              
T Consensus        35 ~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~--------------  100 (126)
T cd00204          35 AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN--------------  100 (126)
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc--------------
Confidence            45667888999999999999999999888554       489999999999999999999987777              


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy11714        233 SSTFTPDITPLILAAHMNNYEILKILL  259 (272)
Q Consensus       233 ~~~~~~g~t~l~~A~~~~~~~iv~~Ll  259 (272)
                       ..+..+.||+++|...++.+++++|+
T Consensus       101 -~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204         101 -ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence             67788999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG1710|consensus

Probab=99.52  E-value=9.2e-14  Score=110.85  Aligned_cols=115  Identities=22%  Similarity=0.302  Sum_probs=101.8

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------hH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK--------DA  103 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~  103 (272)
                      .+..+++|..++..++.+-+..||+.-      -++|.+|.+|.|+|..|+.+|+.++|++||+.|+|+|        ||
T Consensus         9 ld~~~~~Lle~i~Kndt~~a~~LLs~v------r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTp   82 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEAALALLSTV------RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTP   82 (396)
T ss_pred             ccchhhHHHHHHccCcHHHHHHHHHHh------hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccH
Confidence            445677899999999999999999974      6789999999999999999999999999999999996        79


Q ss_pred             HHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11714        104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI  183 (272)
Q Consensus       104 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~  183 (272)
                      ||+|+.+|+.++.++|++.|+.                                +...++-|+|+-..|++-|+-++|..
T Consensus        83 LmFAALSGn~dvcrllldaGa~--------------------------------~~~vNsvgrTAaqmAAFVG~H~CV~i  130 (396)
T KOG1710|consen   83 LMFAALSGNQDVCRLLLDAGAR--------------------------------MYLVNSVGRTAAQMAAFVGHHECVAI  130 (396)
T ss_pred             HHHHHHcCCchHHHHHHhccCc--------------------------------cccccchhhhHHHHHHHhcchHHHHH
Confidence            9999999999999999998765                                44677788888888888888777665


Q ss_pred             H
Q psy11714        184 L  184 (272)
Q Consensus       184 L  184 (272)
                      +
T Consensus       131 I  131 (396)
T KOG1710|consen  131 I  131 (396)
T ss_pred             H
Confidence            5

>KOG4214|consensus

Probab=99.49  E-value=1.6e-13  Score=91.14  Aligned_cols=86  Identities=22%  Similarity=0.290  Sum_probs=79.2

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCc------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCC
Q psy11714        167 SSLIAAIENENIELINILLEYNIQV------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI  240 (272)
Q Consensus       167 t~L~~a~~~g~~~~~~~Ll~~g~~~------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  240 (272)
                      ..+.|++.+|..+-|+..+..|.++      ++|||+|+..|..++++||+..|++++               .+|+.|-
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~---------------~kDKygI   68 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQ---------------DKDKYGI   68 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccC---------------CccccCC
Confidence            4567899999999999999999777      699999999999999999999999999               8999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy11714        241 TPLILAAHMNNYEILKILLDRGATLPM  267 (272)
Q Consensus       241 t~l~~A~~~~~~~iv~~Ll~~ga~~~~  267 (272)
                      |||.-|+..|+.++|++|+++||+-..
T Consensus        69 TPLLsAvwEGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   69 TPLLSAVWEGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             cHHHHHHHHhhHHHHHHHHHcCcccce
Confidence            999999999999999999999998554

>KOG4214|consensus

Probab=99.47  E-value=1.9e-13  Score=90.75  Aligned_cols=84  Identities=19%  Similarity=0.289  Sum_probs=76.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIK  109 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~  109 (272)
                      ..+.+++..|.++.|+.....|      .++|..- .|++|||+|+-.|..+++++|+..|++++       |||-.|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g------~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG------LNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc------ccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHH
Confidence            4588999999999999999997      7887764 79999999999999999999999999995       79999999


Q ss_pred             cCcHHHHHHHHccccccc
Q psy11714        110 EEYVEAVEILLEWEEKIH  127 (272)
Q Consensus       110 ~~~~~~~~~Ll~~g~~~~  127 (272)
                      .|+.++|++|+++|++-.
T Consensus        77 EGH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRT   94 (117)
T ss_pred             HhhHHHHHHHHHcCcccc
Confidence            999999999999998754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.41  E-value=3e-12  Score=102.96  Aligned_cols=116  Identities=30%  Similarity=0.302  Sum_probs=104.1

Q ss_pred             hhhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCC--
Q psy11714        100 VKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN--  177 (272)
Q Consensus       100 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~--  177 (272)
                      ..++++.++..+...++++++..|++                                ++.++..|.||||+|+..++  
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------~~~~~~~g~t~l~~a~~~~~~~  120 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGAD--------------------------------VNAKDADGDTPLHLAALNGNPP  120 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCC--------------------------------cccccCCCCcHHHHHHhcCCcc
Confidence            35788999999999998888887654                                45888999999999999999  


Q ss_pred             ---HHHHHHHHhCCC--Cc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHH
Q psy11714        178 ---IELINILLEYNI--QV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLI  244 (272)
Q Consensus       178 ---~~~~~~Ll~~g~--~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~  244 (272)
                         .+++++|++.|+  +.        +||||+|+..|+.++++.|++.|++++               ..+..|.|+++
T Consensus       121 ~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~---------------~~~~~g~t~l~  185 (235)
T COG0666         121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN---------------SRNSYGVTALD  185 (235)
T ss_pred             cchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc---------------ccccCCCcchh
Confidence               999999999999  34        699999999999999999999999998               66889999999


Q ss_pred             HHHHcCCHHHHHHHHHCC
Q psy11714        245 LAAHMNNYEILKILLDRG  262 (272)
Q Consensus       245 ~A~~~~~~~iv~~Ll~~g  262 (272)
                      .|+..++.++++.++..|
T Consensus       186 ~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         186 PAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hhcccchHHHHHHHHhcC
Confidence            999999999999999976

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.37  E-value=7.8e-12  Score=100.53  Aligned_cols=115  Identities=28%  Similarity=0.313  Sum_probs=91.1

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC--Ch--------
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN-----IELINILLEYNI--QV--------  100 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~--~~--------  100 (272)
                      ...++.++..++.+.+..++..+      ++++.++..|.||||+|+..++     .++++.|++.|+  +.        
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          74 RLPLHSAASKGDDKIVKLLLASG------ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCHHHHHHHcCcHHHHHHHHHcC------CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            45577888888888888888876      7778888888888888888888     888888888888  33        


Q ss_pred             hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      +||||+|+..|+.+++++|++.|++++                                ..+..|.|++++|+..++.++
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~--------------------------------~~~~~g~t~l~~a~~~~~~~~  195 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPN--------------------------------SRNSYGVTALDPAAKNGRIEL  195 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCc--------------------------------ccccCCCcchhhhcccchHHH
Confidence            378888888888888888888765543                                457788888888888888888


Q ss_pred             HHHHHhCC
Q psy11714        181 INILLEYN  188 (272)
Q Consensus       181 ~~~Ll~~g  188 (272)
                      ++.++..+
T Consensus       196 ~~~l~~~~  203 (235)
T COG0666         196 VKLLLDKG  203 (235)
T ss_pred             HHHHHhcC
Confidence            88888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=2.1e-12  Score=79.97  Aligned_cols=53  Identities=34%  Similarity=0.423  Sum_probs=44.0

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy11714        192 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILL  259 (272)
Q Consensus       192 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll  259 (272)
                      .|+||+|+..|+.+++++|+++|++++               .+|..|.||||+|+..|+.+++++|+
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din---------------~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADIN---------------AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT----------------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCC---------------CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            378999999999999999999999998               67899999999999999999999996

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.32  E-value=1.1e-11  Score=114.99  Aligned_cols=89  Identities=22%  Similarity=0.163  Sum_probs=82.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCC
Q psy11714        167 SSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD  239 (272)
Q Consensus       167 t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g  239 (272)
                      +.|+.|+..|+.++++.|++.|+++       +||||+|+..|+.+++++|+++|++++               .+|..|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn---------------~~d~~G  148 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT---------------LLDKDG  148 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC---------------CCCCCC
Confidence            4588999999999999999999988       599999999999999999999999999               788999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-------CCCCCCCCC
Q psy11714        240 ITPLILAAHMNNYEILKILLDR-------GATLPMPHD  270 (272)
Q Consensus       240 ~t~l~~A~~~~~~~iv~~Ll~~-------ga~~~~~~~  270 (272)
                      .||||+|+..++.+++++|+++       |++++..+.
T Consensus       149 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~  186 (664)
T PTZ00322        149 KTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSF  186 (664)
T ss_pred             CCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCcccc
Confidence            9999999999999999999999       888876653

>KOG0515|consensus

Probab=99.31  E-value=1.1e-11  Score=106.54  Aligned_cols=103  Identities=22%  Similarity=0.282  Sum_probs=74.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCh-------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcC
Q psy11714         78 LIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELK  150 (272)
Q Consensus        78 L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~  150 (272)
                      |.-|+..|-+++|+-.+..--|+       -|+||-|+..|+.+||++|++.|+++                        
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV------------------------  609 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV------------------------  609 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc------------------------
Confidence            33466667777777776655444       26777777777777888888776554                        


Q ss_pred             CCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--------hhHHHHH--HHcCCHHHHHHHHh
Q psy11714        151 DQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV--------KDALLHA--IKEEYVEAVEILLE  212 (272)
Q Consensus       151 ~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~--------~t~l~~A--~~~~~~~~~~~Ll~  212 (272)
                              |..|.+|+||||+|+.+++..+|+.|++.|+-+        .|+...+  ...|+..+.+||..
T Consensus       610 --------Na~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  610 --------NAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             --------cCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence                    477888999999999999999999999988776        3555443  34677788888763

>KOG1710|consensus

Probab=99.29  E-value=3.1e-11  Score=96.58  Aligned_cols=114  Identities=27%  Similarity=0.281  Sum_probs=100.0

Q ss_pred             ChhhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCH
Q psy11714         99 QVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI  178 (272)
Q Consensus        99 ~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~  178 (272)
                      ++..||.-++..+..+-+.-|++.                                .-++|.+|..|+++|..|++.|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~--------------------------------vr~vn~~D~sGMs~LahAaykGnl   58 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST--------------------------------VRQVNQRDPSGMSVLAHAAYKGNL   58 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH--------------------------------hhhhhccCCCcccHHHHHHhcCcH
Confidence            345677778888887777777762                                134778999999999999999999


Q ss_pred             HHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcC
Q psy11714        179 ELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN  250 (272)
Q Consensus       179 ~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  250 (272)
                      +.+++|++.|+|+        .|||++|+..|+.++.++|++-|+...               ..++-|.|+-.+|+--|
T Consensus        59 ~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~---------------~vNsvgrTAaqmAAFVG  123 (396)
T KOG1710|consen   59 TLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMY---------------LVNSVGRTAAQMAAFVG  123 (396)
T ss_pred             HHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccc---------------cccchhhhHHHHHHHhc
Confidence            9999999999999        499999999999999999999999998               78889999999999999


Q ss_pred             CHHHHHHHH
Q psy11714        251 NYEILKILL  259 (272)
Q Consensus       251 ~~~iv~~Ll  259 (272)
                      +++.|..+-
T Consensus       124 ~H~CV~iIN  132 (396)
T KOG1710|consen  124 HHECVAIIN  132 (396)
T ss_pred             chHHHHHHh
Confidence            999988764

>KOG3609|consensus

Probab=99.28  E-value=1.4e-11  Score=111.60  Aligned_cols=137  Identities=46%  Similarity=0.645  Sum_probs=114.2

Q ss_pred             HHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHH
Q psy11714        103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELIN  182 (272)
Q Consensus       103 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~  182 (272)
                      -+-.|+..|+...|+..++.....                            ..++|..|.-|+++|++|+.+.+.++++
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~----------------------------~lninc~d~lGr~al~iai~nenle~~e   79 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVS----------------------------KLNINCRDPLGRLALHIAIDNENLELQE   79 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhcccc----------------------------ccchhccChHhhhceecccccccHHHHH
Confidence            345678888888888888743321                            2678999999999999999999999999


Q ss_pred             HHHhCCCCchhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy11714        183 ILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG  262 (272)
Q Consensus       183 ~Ll~~g~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~g  262 (272)
                      +|++.......+|.+|+..|..+.++.++.+-........     +.+........+.||+.+||+.+++|++++|+.+|
T Consensus        80 LLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~-----~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg  154 (822)
T KOG3609|consen   80 LLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLER-----SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRG  154 (822)
T ss_pred             HHhcCccccchHHHHHHHHHHHHHHHHHHhcccccchhcc-----ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcC
Confidence            9999999999999999999999999999987544431111     33334456677899999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy11714        263 ATLPMPHDVR  272 (272)
Q Consensus       263 a~~~~~~~~~  272 (272)
                      +.+..||+||
T Consensus       155 ~~i~~PH~~~  164 (822)
T KOG3609|consen  155 HCIPIPHDIR  164 (822)
T ss_pred             CCCCCCcccc
Confidence            9999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.28  E-value=2.2e-11  Score=113.07  Aligned_cols=98  Identities=21%  Similarity=0.275  Sum_probs=84.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIK  109 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~  109 (272)
                      ..|+.|+..|+.+.++.|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++       ||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G------adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG------ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            3588999999999999999997      9999999999999999999999999999999999984       89999999


Q ss_pred             cCcHHHHHHHHcc-------ccccccCCCCccccCCcccHHHHH
Q psy11714        110 EEYVEAVEILLEW-------EEKIHVHGQPYVSENKGRTIFMML  146 (272)
Q Consensus       110 ~~~~~~~~~Ll~~-------g~~~~~~~~~~~~~~~~~t~l~~~  146 (272)
                      .++.+++++|+.+       |++++      ..+..|.+|+...
T Consensus       158 ~g~~~iv~~Ll~~~~~~~~~ga~~~------~~~~~g~~~~~~~  195 (664)
T PTZ00322        158 NGFREVVQLLSRHSQCHFELGANAK------PDSFTGKPPSLED  195 (664)
T ss_pred             CCcHHHHHHHHhCCCcccccCCCCC------ccccCCCCccchh
Confidence            9999999999998       55554      3444455555443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.25  E-value=2.1e-11  Score=75.43  Aligned_cols=52  Identities=29%  Similarity=0.405  Sum_probs=42.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL   94 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll   94 (272)
                      ++||+|+..|+.+++++|++.+      .++|.+|..|.||||+|+..|+.+++++||
T Consensus         3 t~lh~A~~~g~~~~~~~Ll~~~------~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    3 TPLHWAARSGNLEIVKLLLEHG------ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             BHHHHHHHTT-HHHHHHHHHTT------SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5699999999999999999997      899999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.12  E-value=9.3e-11  Score=73.02  Aligned_cols=44  Identities=20%  Similarity=0.230  Sum_probs=26.4

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHH
Q psy11714         64 VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHA  107 (272)
Q Consensus        64 ~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A  107 (272)
                      +.++|.+|..|.||||+|+..|+.+++++|++.|++++       ||+|+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            38888999999999999999888888888888887773       566665

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.08  E-value=1.4e-10  Score=72.16  Aligned_cols=48  Identities=27%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             HHhcC-ccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        210 LLEWE-EKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       210 Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      |+++| ++++               .+|..|.||||+|+.+|+.+++++|+++|++++.+|..+
T Consensus         1 LL~~~~~~~n---------------~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G   49 (56)
T PF13857_consen    1 LLEHGPADVN---------------AQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDG   49 (56)
T ss_dssp             -----T--TT------------------TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS
T ss_pred             CCccCcCCCc---------------CcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCC
Confidence            56667 6666               789999999999999999999999999999999998753

>KOG0515|consensus

Probab=99.07  E-value=4.5e-10  Score=96.80  Aligned_cols=82  Identities=27%  Similarity=0.334  Sum_probs=67.8

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCc
Q psy11714        169 LIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDIT  241 (272)
Q Consensus       169 L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t  241 (272)
                      |--|+..|.+++|+-.+..--|+       -|+||-|+..|+.++|+||+++|+++|               ..|.+|.|
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN---------------a~DSdGWT  618 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN---------------AADSDGWT  618 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc---------------CccCCCCc
Confidence            33466788888888777655555       389999999999999999999999988               78888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC
Q psy11714        242 PLILAAHMNNYEILKILLDRGATL  265 (272)
Q Consensus       242 ~l~~A~~~~~~~iv~~Ll~~ga~~  265 (272)
                      |||+|+..++.-|++.|+++||.+
T Consensus       619 PLHCAASCNnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  619 PLHCAASCNNVPMCKQLVESGAAV  642 (752)
T ss_pred             hhhhhhhcCchHHHHHHHhccceE
Confidence            999999988999999999998865

>KOG3609|consensus

Probab=99.06  E-value=9.7e-10  Score=99.88  Aligned_cols=140  Identities=35%  Similarity=0.377  Sum_probs=115.9

Q ss_pred             hhhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHH
Q psy11714         28 VEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHA  107 (272)
Q Consensus        28 ~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A  107 (272)
                      .....+++++.+..|++.|+...|+..++....  ...++|..|.-|+++|+.|+.+.+.+++++|++++.....+|.+|
T Consensus        18 ~~~~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~--~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~a   95 (822)
T KOG3609|consen   18 VDADLNEGEKGFLLAHENGDVPLVAKALEYKAV--SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLA   95 (822)
T ss_pred             cccccchhhHHHHHHHHcCChHHHHHHHHhccc--cccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHH
Confidence            456678889999999999999999999997643  237899999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY  187 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~  187 (272)
                      +..+..++|+.++.+......         .+.             .+......-.-+-|||.+||..++.||++.|+.+
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~---------~~~-------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPY---------LER-------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             HHHHHHHHHHHHHhcccccch---------hcc-------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            999999999999997533220         000             0111122234577999999999999999999999


Q ss_pred             CCCc
Q psy11714        188 NIQV  191 (272)
Q Consensus       188 g~~~  191 (272)
                      |+.+
T Consensus       154 g~~i  157 (822)
T KOG3609|consen  154 GHCI  157 (822)
T ss_pred             CCCC
Confidence            9888

>PF13606 Ank_3: Ankyrin repeat

Probab=99.04  E-value=3.4e-10  Score=60.52  Aligned_cols=30  Identities=47%  Similarity=0.563  Sum_probs=28.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy11714        238 PDITPLILAAHMNNYEILKILLDRGATLPM  267 (272)
Q Consensus       238 ~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~  267 (272)
                      .|.||||+|+..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            389999999999999999999999999984

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.99  E-value=7.7e-10  Score=60.85  Aligned_cols=33  Identities=33%  Similarity=0.474  Sum_probs=31.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy11714        238 PDITPLILAAHMNNYEILKILLDRGATLPMPHD  270 (272)
Q Consensus       238 ~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~  270 (272)
                      .|.||||+|+.+++.+++++|+++||+++.+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            389999999999999999999999999999875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.81  E-value=6.9e-09  Score=55.42  Aligned_cols=29  Identities=34%  Similarity=0.421  Sum_probs=25.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCChh
Q psy11714         73 LNRSSLIAAIENENIELINILLEYNIQVK  101 (272)
Q Consensus        73 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  101 (272)
                      +|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999998875

>KOG0783|consensus

Probab=98.73  E-value=5.7e-09  Score=94.53  Aligned_cols=77  Identities=22%  Similarity=0.334  Sum_probs=72.7

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCC
Q psy11714         67 INCVDPLNRSSLIAAIENENIELINILLEYNIQVK--------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENK  138 (272)
Q Consensus        67 ~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  138 (272)
                      .|.+|.+|+|+||.++..+..++++|||++|+++.        ||||.|+..|+.+++-+|+.+|+...      .+|++
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~------i~Dke  118 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR------IKDKE  118 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceE------Eeccc
Confidence            67899999999999999999999999999999993        89999999999999999999998887      89999


Q ss_pred             cccHHHHHHhc
Q psy11714        139 GRTIFMMLDEL  149 (272)
Q Consensus       139 ~~t~l~~~~~~  149 (272)
                      |.+||++.+..
T Consensus       119 glsplq~~~r~  129 (1267)
T KOG0783|consen  119 GLSPLQFLSRV  129 (1267)
T ss_pred             CCCHHHHHhhc
Confidence            99999998884

>KOG0818|consensus

Probab=98.67  E-value=1.2e-07  Score=81.51  Aligned_cols=91  Identities=20%  Similarity=0.230  Sum_probs=82.0

Q ss_pred             ccccCCCCCCCCH------HHHHHHcCCHHHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCC
Q psy11714        156 FNINCVDPLNRSS------LIAAIENENIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHG  221 (272)
Q Consensus       156 ~~~~~~d~~~~t~------L~~a~~~g~~~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  221 (272)
                      .....+|.+|.++      ||.+++.|+.+++--|+..|+++        +||||.|+..|+...+++|+-+|+|+.   
T Consensus       118 ~~~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~---  194 (669)
T KOG0818|consen  118 HRLPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG---  194 (669)
T ss_pred             ccCCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC---
Confidence            3456677777665      89999999999999999999999        599999999999999999999999999   


Q ss_pred             CcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       222 ~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                                  ..|..|.||+.+|-..|+.++..-|++.
T Consensus       195 ------------a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  195 ------------AQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             ------------CCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence                        8899999999999999999998888764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.59  E-value=8.3e-08  Score=52.61  Aligned_cols=29  Identities=14%  Similarity=0.268  Sum_probs=24.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCChh
Q psy11714         73 LNRSSLIAAIENENIELINILLEYNIQVK  101 (272)
Q Consensus        73 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  101 (272)
                      +|.||||+|+..|+.+++++|+++|++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            47888888888888888888888888874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.55  E-value=4e-08  Score=89.22  Aligned_cols=76  Identities=22%  Similarity=0.298  Sum_probs=71.3

Q ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhh
Q psy11714        158 INCVDPLNRSSLIAAIENENIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV  229 (272)
Q Consensus       158 ~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  229 (272)
                      .|.+|..|+|+||+++..+..+++++|+++|+|+        .||||.|+..|+++++-.|+++|+.+.           
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~-----------  113 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR-----------  113 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceE-----------
Confidence            6788999999999999999999999999999999        599999999999999999999999888           


Q ss_pred             hcCCCCCCCCCcHHHHHHH
Q psy11714        230 DRSSSTFTPDITPLILAAH  248 (272)
Q Consensus       230 ~~~~~~~~~g~t~l~~A~~  248 (272)
                          .+|++|..||...++
T Consensus       114 ----i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  114 ----IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ----EecccCCCHHHHHhh
Confidence                789999999987765

>KOG0506|consensus

Probab=98.51  E-value=1.4e-07  Score=80.75  Aligned_cols=89  Identities=20%  Similarity=0.271  Sum_probs=67.5

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEA  115 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~  115 (272)
                      ...+.+|+..||+..++++.-+|      .+++.+|.+.+|+||.|+..|+.+++++|++.                   
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g------~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~-------------------  561 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQG------MDLETKDYDDRTALHVAAAEGHVEVVKFLLNA-------------------  561 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhc------ccccccccccchhheeecccCceeHHHHHHHH-------------------
Confidence            34477888888888888888876      88888888888888888888887777777753                   


Q ss_pred             HHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11714        116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY  187 (272)
Q Consensus       116 ~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~  187 (272)
                            .                                ..+++.+|.+|+|||.-|...++.+++++|-+.
T Consensus       562 ------~--------------------------------kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  562 ------C--------------------------------KVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             ------H--------------------------------cCCCChhhccCCCcchHhHhcCcHHHHHHHHHH
Confidence                  0                                144667778888888888888888888877654

>KOG0511|consensus

Probab=98.49  E-value=3.4e-07  Score=76.34  Aligned_cols=75  Identities=24%  Similarity=0.317  Sum_probs=63.2

Q ss_pred             cccccccccchhhhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714         17 IARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY   96 (272)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   96 (272)
                      +-.++|..+.|.....   -..|.+|++.|+++.+++|++.|      .++|.+|.+..+||.+|+..||.++|++||++
T Consensus        21 mD~~~~~~s~~~~~~~---f~elceacR~GD~d~v~~LVetg------vnVN~vD~fD~spL~lAsLcGHe~vvklLLen   91 (516)
T KOG0511|consen   21 MDLQDYKPSVPLKKVP---FGELCEACRAGDVDRVRYLVETG------VNVNAVDRFDSSPLYLASLCGHEDVVKLLLEN   91 (516)
T ss_pred             cchhhcCcccccccCc---hHHHHHHhhcccHHHHHHHHHhC------CCcchhhcccccHHHHHHHcCcHHHHHHHHHc
Confidence            3455666666643322   34599999999999999999987      99999999999999999999999999999999


Q ss_pred             CCCh
Q psy11714         97 NIQV  100 (272)
Q Consensus        97 g~~~  100 (272)
                      |+--
T Consensus        92 GAiC   95 (516)
T KOG0511|consen   92 GAIC   95 (516)
T ss_pred             CCcc
Confidence            9754

>KOG0506|consensus

Probab=98.47  E-value=1.8e-07  Score=80.00  Aligned_cols=86  Identities=22%  Similarity=0.201  Sum_probs=77.4

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHh-cCccCCCCCCcchhhhhhcCCC
Q psy11714        163 PLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYSWEAVDRSSS  234 (272)
Q Consensus       163 ~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~~  234 (272)
                      ..+..++.+|++.|....++-+.-.|.|+       +|+||.|+..|+.+++++|++ .+.+++               .
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~---------------~  568 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPD---------------P  568 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCC---------------h
Confidence            34567899999999999999998888888       699999999999999999997 577777               8


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy11714        235 TFTPDITPLILAAHMNNYEILKILLDRGA  263 (272)
Q Consensus       235 ~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga  263 (272)
                      +|.+|.|||.-|.+.++.+++++|-+..-
T Consensus       569 kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  569 KDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            89999999999999999999999987655

>KOG0782|consensus

Probab=98.44  E-value=2.6e-06  Score=74.68  Aligned_cols=115  Identities=15%  Similarity=0.086  Sum_probs=94.7

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh---------hhHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV---------KDALL  105 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------~t~l~  105 (272)
                      ..+.+..|+..+|+-.++.....|      -.+-.++..-+|.||+|+..|+-++|+++|+||..-         .|+||
T Consensus       866 iseeil~av~~~D~~klqE~h~~g------g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lh  939 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLNG------GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALH  939 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhcC------CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHH
Confidence            345588999999988888777776      566678888899999999999999999999998543         48999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL  185 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll  185 (272)
                      -|+..++..+..+|++.|+.+.                                ..|..|.||-.-|-..|..+..-||-
T Consensus       940 kaa~~~~r~vc~~lvdagasl~--------------------------------ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  940 KAACQRNRAVCQLLVDAGASLR--------------------------------KTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHHhcchHHHHHHHhcchhhe--------------------------------ecccCCCChHHHHHhcCCchHHHHHh
Confidence            9999999999999999887654                                44667778888887788888877776


Q ss_pred             hC
Q psy11714        186 EY  187 (272)
Q Consensus       186 ~~  187 (272)
                      ++
T Consensus       988 ~r  989 (1004)
T KOG0782|consen  988 SR  989 (1004)
T ss_pred             hh
Confidence            54

>KOG0705|consensus

Probab=98.39  E-value=1.1e-06  Score=77.09  Aligned_cols=87  Identities=25%  Similarity=0.377  Sum_probs=72.0

Q ss_pred             HHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11714        104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI  183 (272)
Q Consensus       104 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~  183 (272)
                      |-.|....++..+-+|+.||-...                            .+...-+.+|+|+||+||..|++.+.++
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e----------------------------~~~t~~~~~grt~LHLa~~~gnVvl~QL  679 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREE----------------------------VNETCGEGDGRTALHLAARKGNVVLAQL  679 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchh----------------------------hhccccCCCCcchhhhhhhhcchhHHHH
Confidence            445666666777777777775443                            3445567789999999999999999999


Q ss_pred             HHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCC
Q psy11714        184 LLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIH  218 (272)
Q Consensus       184 Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~  218 (272)
                      |+-+|+|+       +|+|.||-..|..+++++|+.+|+.-+
T Consensus       680 LiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  680 LIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            99999999       799999999999999999999997654

>KOG0705|consensus

Probab=98.37  E-value=1.6e-06  Score=76.08  Aligned_cols=93  Identities=23%  Similarity=0.310  Sum_probs=78.1

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hhHHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALL  105 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l~  105 (272)
                      .+-...|..|+...|+..+..||..|-.+  ..+-..-+..|+|+||+|+..|+..+.++|+=+|+|+       +|+|.
T Consensus       622 ~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~--e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  622 EPLGQQLLRAVAAEDLQTAILLLAHGSRE--EVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALF  699 (749)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhccCch--hhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhh
Confidence            44456799999999999999999987322  1333344557899999999999999999999999998       58999


Q ss_pred             HHHHcCcHHHHHHHHccccccc
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIH  127 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~  127 (272)
                      ||-..|..+|+..|+.+|..-+
T Consensus       700 yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hHhhcccHHHHHHHHHcCCCcc
Confidence            9999999999999999986544

>KOG0818|consensus

Probab=98.26  E-value=4.5e-06  Score=72.03  Aligned_cols=82  Identities=20%  Similarity=0.163  Sum_probs=74.7

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDP-LNRSSLIAAIENENIELINILLEYNIQVK-------DALLHA  107 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A  107 (272)
                      ..+||..++.|+.++--+||..|      ++.|..+. .|.||||.|+..|...=+++|+-+|+|+.       ||+.+|
T Consensus       134 srQLhasvRt~nlet~LRll~lG------A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~A  207 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLG------AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYA  207 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcc------cccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHH
Confidence            45699999999999999999998      99999888 59999999999999999999999999994       799999


Q ss_pred             HHcCcHHHHHHHHccc
Q psy11714        108 IKEEYVEAVEILLEWE  123 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g  123 (272)
                      -..|+-++.+.|++.-
T Consensus       208 R~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  208 RQGGHHELAERLVEIQ  223 (669)
T ss_pred             HhcCchHHHHHHHHHH
Confidence            9999999988888743

>KOG0782|consensus

Probab=98.24  E-value=4e-06  Score=73.57  Aligned_cols=93  Identities=18%  Similarity=0.125  Sum_probs=83.8

Q ss_pred             cccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcch
Q psy11714        155 VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV---------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYS  225 (272)
Q Consensus       155 ~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~---------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~  225 (272)
                      |.++-.++.+-.+.||+|+..|+-++|+|++++|...         .|+||.|+..++..+..+|++-|+.+.       
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~-------  961 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLR-------  961 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe-------
Confidence            4555567778899999999999999999999999654         699999999999999999999999988       


Q ss_pred             hhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy11714        226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG  262 (272)
Q Consensus       226 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~g  262 (272)
                              ..|..|.||-.-|-+-|..+++-||-++.
T Consensus       962 --------ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  962 --------KTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             --------ecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence                    78999999999999999999999998764

>KOG0511|consensus

Probab=98.12  E-value=5.9e-06  Score=69.15  Aligned_cols=59  Identities=27%  Similarity=0.361  Sum_probs=54.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        193 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       193 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                      --|..||+.|+.+.+++|++.|.++|               ..|.+...||.+|+.-||.++||+|+++||-+.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN---------------~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVN---------------AVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcc---------------hhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            45678999999999999999999999               889999999999999999999999999999654

>KOG0522|consensus

Probab=97.94  E-value=2.9e-05  Score=67.78  Aligned_cols=58  Identities=24%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             ccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhc
Q psy11714        156 FNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEW  213 (272)
Q Consensus       156 ~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~  213 (272)
                      ..++.+|..|+||||+|+..|+...++.|+..|+++       +++||.|+..|+.+++..++.+
T Consensus        46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            457788999999999999999999999999999988       6999999999999988777765

>KOG0522|consensus

Probab=97.86  E-value=4.2e-05  Score=66.83  Aligned_cols=80  Identities=21%  Similarity=0.212  Sum_probs=65.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHhCC--CCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCC
Q psy11714        167 SSLIAAIENENIELINILLEYN--IQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT  237 (272)
Q Consensus       167 t~L~~a~~~g~~~~~~~Ll~~g--~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (272)
                      -|+|++......+-...++...  ..+       +||||+|+..|+.+.++.|+..|+++.               .+|.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~---------------~kN~   86 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS---------------IKNN   86 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc---------------cccc
Confidence            4588988887766655433221  111       799999999999999999999999998               7899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        238 PDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       238 ~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                      .|.+|||.|+..|+.+++..++.+
T Consensus        87 ~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   87 EGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccccHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999888877754

>KOG0521|consensus

Probab=97.74  E-value=5.1e-05  Score=71.31  Aligned_cols=82  Identities=21%  Similarity=0.211  Sum_probs=72.1

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCC
Q psy11714        163 PLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSST  235 (272)
Q Consensus       163 ~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  235 (272)
                      ..|.++||.|+..|..-++++|++.|+++       ++|+|.+...|+...+..|+++|++.+               ..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~---------------a~  718 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN---------------AF  718 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc---------------cc
Confidence            46889999999999999999999999998       699999999999999999999999998               78


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHH
Q psy11714        236 FTPDITPLILAAHMNNYEILKILL  259 (272)
Q Consensus       236 ~~~g~t~l~~A~~~~~~~iv~~Ll  259 (272)
                      +.+|.+|+++|....+.+++-++.
T Consensus       719 ~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  719 DPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             CccCcchhhHHhhhccccHHHHHh
Confidence            889999999997666655555544

>KOG2384|consensus

Probab=97.67  E-value=0.00022  Score=54.43  Aligned_cols=58  Identities=29%  Similarity=0.193  Sum_probs=53.2

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCh-------hhHHHHHHHcCcHHHHHHHHcc
Q psy11714         65 FNINCVDPLNRSSLIAAIENENIELINILLEYN-IQV-------KDALLHAIKEEYVEAVEILLEW  122 (272)
Q Consensus        65 ~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~-------~t~l~~A~~~~~~~~~~~Ll~~  122 (272)
                      .++|.+|.+|.|+|++|+..|..+.+.+|+.+| +.+       .+++.+|-..|..++++.|-++
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            689999999999999999999999999999999 666       3688999999999999999885

>KOG0521|consensus

Probab=97.49  E-value=0.00018  Score=67.69  Aligned_cols=77  Identities=23%  Similarity=0.304  Sum_probs=59.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHH
Q psy11714         73 LNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMM  145 (272)
Q Consensus        73 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~  145 (272)
                      .|.|+||.|+..+...++++|+++|++++       +|+|.+...|+...+.+|+++|++.                   
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-------------------  715 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-------------------  715 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccc-------------------
Confidence            57888888888888888888888888884       6888888888888888888877554                   


Q ss_pred             HHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        146 LDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       146 ~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                                   +..+..|.+++++|....+.+++
T Consensus       716 -------------~a~~~~~~~~l~~a~~~~~~d~~  738 (785)
T KOG0521|consen  716 -------------NAFDPDGKLPLDIAMEAANADIV  738 (785)
T ss_pred             -------------cccCccCcchhhHHhhhccccHH
Confidence                         46667777777777655444433

>smart00248 ANK ankyrin repeats

Probab=97.46  E-value=0.00029  Score=36.06  Aligned_cols=28  Identities=50%  Similarity=0.733  Sum_probs=26.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        239 DITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       239 g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                      |.||+|+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6899999999999999999999999875

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2384|consensus

Probab=97.45  E-value=0.00053  Score=52.39  Aligned_cols=62  Identities=27%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             ccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCc-------hhHHHHHHHcCCHHHHHHHHhcCccC
Q psy11714        156 FNINCVDPLNRSSLIAAIENENIELINILLEYN-IQV-------KDALLHAIKEEYVEAVEILLEWEEKI  217 (272)
Q Consensus       156 ~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g-~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~  217 (272)
                      .++|.+|..|.|++..|+..|+.+.+.+|+.+| +.+       .+++.+|-..|..+++..|.+.-.+-
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            578999999999999999999999999999999 666       58999999999999999999874443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.32  E-value=0.0035  Score=49.39  Aligned_cols=123  Identities=23%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccc
Q psy11714         77 SLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF  156 (272)
Q Consensus        77 ~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~  156 (272)
                      .|.-|+...+.+-+.-++...-+-.+++-+|+..+..+++-+|+++                                 .
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA~~Am~~si~~~K~dva~~lls~---------------------------------f  202 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDAHQAMWLSIGNAKEDVALYLLSK---------------------------------F  202 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHHHHHHHHHhcccHHHHHHHHHhh---------------------------------c
Confidence            3455666666666666655544445788888888888888888873                                 1


Q ss_pred             cccCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCchhHHHHHHHcCCHHHHHHHHhcC-ccCCCCCCcchhhhhhcCCC
Q psy11714        157 NINCVDPLNRSSLIAAIENENIELINILLE-YNIQVKDALLHAIKEEYVEAVEILLEWE-EKIHVHGQPYSWEAVDRSSS  234 (272)
Q Consensus       157 ~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~-~g~~~~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~~  234 (272)
                      .+...|        +|.......-++++++ +|++             ..++++.+++| +++|..-            .
T Consensus       203 ~ft~~d--------v~~~~~~~ydieY~LS~h~a~-------------~kvL~~Fi~~Glv~vN~~F------------~  249 (284)
T PF06128_consen  203 NFTKQD--------VASMEKELYDIEYLLSEHSAS-------------YKVLEYFINRGLVDVNKKF------------Q  249 (284)
T ss_pred             ceecch--------hhhcCcchhhHHHHHhhcCCc-------------HHHHHHHHhccccccchhh------------h
Confidence            111111        1111112234455553 4555             55667777777 4554211            3


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy11714        235 TFTPDITPLILAAHMNNYEILKILLDRGATL  265 (272)
Q Consensus       235 ~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~  265 (272)
                      +-..|.|-|.-|.++++.+++.+|+++||-.
T Consensus       250 ~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  250 KVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             ccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            3456899999999999999999999999943

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00248 ANK ankyrin repeats

Probab=97.03  E-value=0.0013  Score=33.48  Aligned_cols=27  Identities=33%  Similarity=0.577  Sum_probs=21.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCh
Q psy11714         74 NRSSLIAAIENENIELINILLEYNIQV  100 (272)
Q Consensus        74 g~t~L~~A~~~~~~~~v~~Ll~~g~~~  100 (272)
                      |.||||+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            668888888888888888888887754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0520|consensus

Probab=96.84  E-value=0.0059  Score=57.97  Aligned_cols=106  Identities=17%  Similarity=0.081  Sum_probs=70.7

Q ss_pred             hhHHHHHHHcCcHHHHHHHHcc-ccccccCCCCccccCCcccHHHHHHhcCCC-------CccccccCCCCCCCCHHHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEW-EEKIHVHGQPYVSENKGRTIFMMLDELKDQ-------PEVFNINCVDPLNRSSLIAA  172 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-------~~~~~~~~~d~~~~t~L~~a  172 (272)
                      .+-+|+++..+..-.++.+++- |....      ..+.++.-.+|+.+..+..       ..+..++.+|..|+||||||
T Consensus       575 ~lllhL~a~~lyawLie~~~e~~~~~~~------eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  575 MLLLHLLAELLYAWLIEKVIEWAGSGDL------ELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             hHHHHHHHHHhHHHHHHHHhcccccCch------hhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            3677888877777777777774 22211      3455666666663333221       12577899999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCch-------------hHHHHHHHcCCHHHHHHHHh
Q psy11714        173 IENENIELINILLEYNIQVK-------------DALLHAIKEEYVEAVEILLE  212 (272)
Q Consensus       173 ~~~g~~~~~~~Ll~~g~~~~-------------t~l~~A~~~~~~~~~~~Ll~  212 (272)
                      +..|+..++..|++.|++..             |+--.|-..|+..+..+|-+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            99999999999999888762             44444445555555555444

>KOG2505|consensus

Probab=96.83  E-value=0.002  Score=56.26  Aligned_cols=58  Identities=21%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             cCCHHHHHHHHhCCCCc-------------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCc
Q psy11714        175 NENIELINILLEYNIQV-------------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDIT  241 (272)
Q Consensus       175 ~g~~~~~~~Ll~~g~~~-------------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t  241 (272)
                      ...+..+++|.+++.+.             .|+||+|+..|...++.+|++.|+|+.               .+|..|.|
T Consensus       401 ~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~---------------~kd~~Grt  465 (591)
T KOG2505|consen  401 KPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS---------------TKDGAGRT  465 (591)
T ss_pred             cCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch---------------hcccCCCC
Confidence            34477889999988776             499999999999999999999999998               88999999


Q ss_pred             HHHHHH
Q psy11714        242 PLILAA  247 (272)
Q Consensus       242 ~l~~A~  247 (272)
                      |+.++.
T Consensus       466 py~ls~  471 (591)
T KOG2505|consen  466 PYSLSA  471 (591)
T ss_pred             cccccc
Confidence            999887

>KOG2505|consensus

Probab=96.58  E-value=0.0022  Score=55.99  Aligned_cols=56  Identities=20%  Similarity=0.138  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHCCCChh-------------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHH
Q psy11714         85 ENIELINILLEYNIQVK-------------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMML  146 (272)
Q Consensus        85 ~~~~~v~~Ll~~g~~~~-------------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~  146 (272)
                      .-+..+++|.+++++.|             |+||+|+..|...+|.+||+.|+++.      .+|..|+||..++
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~------~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS------TKDGAGRTPYSLS  470 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch------hcccCCCCccccc
Confidence            34788999999988773             79999999999999999999886655      4455555555443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.52  E-value=0.088  Score=40.40  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=89.2

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC--CChhhHHHHHHHcCcHHHH
Q psy11714         39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYN--IQVKDALLHAIKEEYVEAV  116 (272)
Q Consensus        39 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~t~l~~A~~~~~~~~~  116 (272)
                      |..|+..+-+.+++++-+..       .-  .-...++.+..||...+.++|+|+-+.=  .++.+-+..|....+.++.
T Consensus        50 l~HAVk~nmL~ILqkyke~L-------~~--~~~~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDL-------EN--ERYLNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHh-------hc--chhHHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHH
Confidence            44566677777777766653       10  1134567788899999999999984421  2334567778777776652


Q ss_pred             H----HHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCch
Q psy11714        117 E----ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK  192 (272)
Q Consensus       117 ~----~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~~  192 (272)
                      .    ++.++..+-           .+..|..+                   -..-|..|+.+|-.+.+...+++|.+++
T Consensus       121 slGY~l~~~~~~~~-----------~~~d~~~l-------------------l~~hl~~a~~kgll~F~letlkygg~~~  170 (192)
T PF03158_consen  121 SLGYKLLFNRMMSE-----------HNEDPTSL-------------------LTQHLEKAAAKGLLPFVLETLKYGGNVD  170 (192)
T ss_pred             HHHHHHHHhhcccc-----------cccCHHHH-------------------HHHHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            2    122211000           00000000                   1134788999999999999999999997


Q ss_pred             -hHHHHHHHcCCHHHHHHHHh
Q psy11714        193 -DALLHAIKEEYVEAVEILLE  212 (272)
Q Consensus       193 -t~l~~A~~~~~~~~~~~Ll~  212 (272)
                       ++|..|+..+++.++.+++.
T Consensus       171 ~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  171 IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHhhHHHHHHHhhc
Confidence             99999999999999998875

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.35  E-value=0.29  Score=37.65  Aligned_cols=127  Identities=16%  Similarity=0.140  Sum_probs=87.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCC----ChhhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCC
Q psy11714         76 SSLIAAIENENIELINILLEYNI----QVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKD  151 (272)
Q Consensus        76 t~L~~A~~~~~~~~v~~Ll~~g~----~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~  151 (272)
                      ..|.-|+..+-+.+++..-+...    ..++-+-.||...+.++|+|+-++   .         ..              
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~~~~~q~LFElAC~~qkydiV~WI~qn---L---------~i--------------  101 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENERYLNQELFELACEEQKYDIVKWIGQN---L---------HI--------------  101 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcchhHHHHHHHHHHHHccccHHHHHhhc---c---------CC--------------
Confidence            45667888888888876644322    234567889999999999999552   1         11              


Q ss_pred             CCccccccCCCCCCCCHHHHHHHcCCHHHH----HHHHhC-----CCCc----hhHHHHHHHcCCHHHHHHHHhcCccCC
Q psy11714        152 QPEVFNINCVDPLNRSSLIAAIENENIELI----NILLEY-----NIQV----KDALLHAIKEEYVEAVEILLEWEEKIH  218 (272)
Q Consensus       152 ~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~----~~Ll~~-----g~~~----~t~l~~A~~~~~~~~~~~Ll~~g~~~~  218 (272)
                                 .+-.+.+.+|....+.+..    +++.++     +.|+    ..-|..|+..|....+.-.+++|.+++
T Consensus       102 -----------~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~  170 (192)
T PF03158_consen  102 -----------YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD  170 (192)
T ss_pred             -----------CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc
Confidence                       1222334455554444321    222233     3333    356778999999999999999998876


Q ss_pred             CCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy11714        219 VHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD  260 (272)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~  260 (272)
                                           .+.|..|+.+++..++.+++.
T Consensus       171 ---------------------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  171 ---------------------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             ---------------------HHHHHHHHHhhHHHHHHHhhc
Confidence                                 599999999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG0520|consensus

Probab=96.07  E-value=0.0074  Score=57.35  Aligned_cols=119  Identities=13%  Similarity=-0.055  Sum_probs=64.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHc-cCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hhHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDE-LKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHA  107 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l~~A  107 (272)
                      ...+|.++..+....+..+++- +      .....-|..|.-++|.|+..|..-.+.+..=.|..+       .||||+|
T Consensus       575 ~lllhL~a~~lyawLie~~~e~~~------~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  575 MLLLHLLAELLYAWLIEKVIEWAG------SGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             hHHHHHHHHHhHHHHHHHHhcccc------cCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            4456667777777777777764 3      334444555555666644444322222222233222       3677777


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE  186 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~  186 (272)
                      +..|+..++..|++-|++..+                          .+++......|.|+-.+|-..|+..+.-+|-+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~--------------------------~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGA--------------------------VTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhcccccc--------------------------ccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            777777777777765554432                          13344444456666666666666555555543

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.80  E-value=0.025  Score=37.19  Aligned_cols=47  Identities=38%  Similarity=0.352  Sum_probs=31.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHHHHHHHcc
Q psy11714         76 SSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEW  122 (272)
Q Consensus        76 t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~~~~Ll~~  122 (272)
                      ..+..|+.+|+.++++.+++.+.....++..|+...+-+++++|+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHHh
Confidence            45677777777777777776554335667777777777777777763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.00  E-value=0.17  Score=40.25  Aligned_cols=48  Identities=8%  Similarity=0.116  Sum_probs=35.9

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY   96 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   96 (272)
                      +..|..|+-.-+.+.+..+....             ..-.+++-+++.++..+++-+|+..
T Consensus       154 ~isledAV~AsN~~~i~~~VtdK-------------kdA~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  154 DISLEDAVKASNYEEISNLVTDK-------------KDAHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             cccHHHHHhhcCHHHHHHHhcch-------------HHHHHHHHHHhcccHHHHHHHHHhh
Confidence            34477788888888877766543             2345788999988899999999874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.92  E-value=0.077  Score=34.84  Aligned_cols=48  Identities=38%  Similarity=0.363  Sum_probs=42.8

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCchhHHHHHHHcCCHHHHHHHHhc
Q psy11714        166 RSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEW  213 (272)
Q Consensus       166 ~t~L~~a~~~g~~~~~~~Ll~~g~~~~t~l~~A~~~~~~~~~~~Ll~~  213 (272)
                      ...+..|+..|+.++++..++.+......+..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHHh
Confidence            456899999999999999998775557889999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.36  E-value=1.4  Score=39.42  Aligned_cols=169  Identities=17%  Similarity=0.079  Sum_probs=100.9

Q ss_pred             ccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHc
Q psy11714         31 ALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKE  110 (272)
Q Consensus        31 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~  110 (272)
                      .....+-.+..|+..++.+.+..++...     ....+.....|.....+--..|.++++   |+.-.|+++=+..|...
T Consensus       260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~-----~ll~~i~~~~~~~i~~fL~~~G~~e~A---L~~~~D~~~rFeLAl~l  331 (443)
T PF04053_consen  260 ELDLSELEFKTAVLRGDFEEVLRMIAAS-----NLLPNIPKDQGQSIARFLEKKGYPELA---LQFVTDPDHRFELALQL  331 (443)
T ss_dssp             E--HHHHHHHHHHHTT-HHH-----HHH-----HTGGG--HHHHHHHHHHHHHTT-HHHH---HHHSS-HHHHHHHHHHC
T ss_pred             EECHHHHHHHHHHHcCChhhhhhhhhhh-----hhcccCChhHHHHHHHHHHHCCCHHHH---HhhcCChHHHhHHHHhc
Confidence            3445667789999999999988888743     133333334465666666667777665   33345677788999999


Q ss_pred             CcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy11714        111 EYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQ  190 (272)
Q Consensus       111 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~  190 (272)
                      |+.+.+.-+.....+.                                    ..+...-..|...|+.++++.=..+..|
T Consensus       332 g~L~~A~~~a~~~~~~------------------------------------~~W~~Lg~~AL~~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  332 GNLDIALEIAKELDDP------------------------------------EKWKQLGDEALRQGNIELAEECYQKAKD  375 (443)
T ss_dssp             T-HHHHHHHCCCCSTH------------------------------------HHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred             CCHHHHHHHHHhcCcH------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence            9998877766521000                                    0122223457778999999998888889


Q ss_pred             chhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC-HHHHHHHHHCC
Q psy11714        191 VKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN-YEILKILLDRG  262 (272)
Q Consensus       191 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~-~~iv~~Ll~~g  262 (272)
                      ....+......|+.+-++.|.+.-..                   .+.-..+++.+...|+ .+.+++|.+.|
T Consensus       376 ~~~L~lLy~~~g~~~~L~kl~~~a~~-------------------~~~~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  376 FSGLLLLYSSTGDREKLSKLAKIAEE-------------------RGDINIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH-------------------TT-HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             ccccHHHHHHhCCHHHHHHHHHHHHH-------------------ccCHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            88888888888888888887753211                   1122455666655554 66778777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2rfa_A	232	Transient receptor potential cation channel subfa	3e-10
2rfa_A	232	Transient receptor potential cation channel subfa	9e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-06
2etb_A	256	Transient receptor potential cation channel subfam	7e-06
2etb_A	256	Transient receptor potential cation channel subfam	7e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 61/212 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           +         + L  A    ++ ++  LL+   +  V +      L  A +  + E  + 
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+       +                            +N     +++ L  A    + 
Sbjct: 66  LLQ-------NK-------------------------AKVNAKAKDDQTPLHCAARIGHT 93

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR 231
            ++ +LLE   N  +        L  A +E +VE V  LLE E              + +
Sbjct: 94  NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ---------ACMTK 144

Query: 232 SSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                    TPL +AA      + ++LL+R A
Sbjct: 145 K------GFTPLHVAAKYGKVRVAELLLERDA 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 5e-15
 Identities = 44/212 (20%), Positives = 69/212 (32%), Gaps = 61/212 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEYNIQV--KD-----ALLHAIKEEYVEAVEI 118
           + N  +    + L  A    + E+   LL+   +V  K       L  A +  +   V++
Sbjct: 39  SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LLE       +                           N N       + L  A    ++
Sbjct: 99  LLE-------NN-------------------------ANPNLATTAGHTPLHIAAREGHV 126

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR 231
           E +  LLE   +           L  A K   V   E+LLE +             A  +
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---------NAAGK 177

Query: 232 SSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +        TPL +A H NN +I+K+LL RG 
Sbjct: 178 NGL------TPLHVAVHHNNLDIVKLLLPRGG 203

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 61/212 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            +N     +++ L  A    +  ++ +LLE   N  +        L  A +E +VE V  
Sbjct: 72  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LLE                                   +  C+     + L  A +   +
Sbjct: 132 LLE-------KEA-------------------------SQACMTKKGFTPLHVAAKYGKV 159

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR 231
            +  +LLE   +           L  A+    ++ V++LL      H         +   
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---------SPAW 210

Query: 232 SSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +        TPL +AA  N  E+ + LL  G 
Sbjct: 211 N------GYTPLHIAAKQNQVEVARSLLQYGG 236

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 61/212 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           + N       + L  A+ + N++++ +LL    +           L  A K+  VE    
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+       +G                          + N       + L  A +  + 
Sbjct: 231 LLQ-------YG-------------------------GSANAESVQGVTPLHLAAQEGHA 258

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR 231
           E++ +LL    N  + +      L    +E +V   ++L++    +         +A  R
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV---------DATTR 309

Query: 232 SSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                    TPL +A+H  N +++K LL   A
Sbjct: 310 M------GYTPLHVASHYGNIKLVKFLLQHQA 335

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 44/220 (20%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           N N       + L  A    ++E +  LLE   +           L  A K   V   E+
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF--------NINCVDPLNRSSLI 170
           LLE +   +  G        G T   +     +  ++         + +       + L 
Sbjct: 165 LLERDAHPNAAG------KNGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217

Query: 171 AAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
            A +   +E+   LL+Y  +   +       L  A +E + E V +LL   ++ + +   
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS--KQANGNLGN 275

Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
            S               TPL L A   +  +  +L+  G 
Sbjct: 276 KSGL-------------TPLHLVAQEGHVPVADVLIKHGV 302

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.8 bits (159), Expect = 4e-12
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 48/222 (21%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           + +       + L  A +   +E+   LL+Y  +   +       L  A +E + E V +
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263

Query: 119 LLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKDQPEV--------FNINCVDPLNRSSL 169
           LL              +    G T   ++ + +    V          ++    +  + L
Sbjct: 264 LLS-------KQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPL 315

Query: 170 IAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG- 221
             A    NI+L+  LL++  ++  K       L  A ++ + + V +LL+       +G 
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-------NGA 368

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
            P     V    +T      PL +A  +    +  +L     
Sbjct: 369 SP---NEVSSDGTT------PLAIAKRLGYISVTDVLKVVTD 401

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 2e-14
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 58/213 (27%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            ++  + L ++ L  A+      ++ +L+    +    D     A   A +      +  
Sbjct: 38  ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+          P                        ++   +    ++L  A+  E  
Sbjct: 98  LLD-------SAAPGTL---------------------DLEARNYDGLTALHVAVNTECQ 129

Query: 179 ELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
           E + +LLE   +I   D       L+HA++   +  V++LL+       HG   +  A  
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-------HGA--NVNAQM 180

Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
            S S      + L  A+      +++ L+  GA
Sbjct: 181 YSGS------SALHSASGRGLLPLVRTLVRSGA 207

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 82/225 (36%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVE 114
           +   +D   +++   A E+ +   +  LL+       +++ ++     AL  A+  E  E
Sbjct: 71  SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130

Query: 115 AVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN-RSSLIAAI 173
            V++LLE        G                          +I+ VD  + RS LI A+
Sbjct: 131 TVQLLLE-------RGA-------------------------DIDAVDIKSGRSPLIHAV 158

Query: 174 ENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSW 226
           EN ++ ++ +LL++  N+  +      AL  A     +  V  L+         G     
Sbjct: 159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-------SG----- 206

Query: 227 EAVDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDRGA 263
                       D         TPL++A      +IL+    R A
Sbjct: 207 -----------ADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 68/219 (31%)

Query: 67  INCVDPLNRSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEA 115
               D    + L  A+   N+  ++ L+         + + +      L  A+       
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN 175
           V +L+         G                          +   +D   +++   A E+
Sbjct: 62  VRLLVT-------AGA-------------------------SPMALDRHGQTAAHLACEH 89

Query: 176 ENIELINILLEY------NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 224
            +   +  LL+       +++ ++     AL  A+  E  E V++LLE    I       
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 149

Query: 225 SWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                           +PLI A   N+  ++++LL  GA
Sbjct: 150 GR--------------SPLIHAVENNSLSMVQLLLQHGA 174

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 26/121 (21%)

Query: 158 INCVDPLNRSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEA 206
               D    + L  A+   N+  ++ L+         + + +      L  A+       
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 207 VEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP 266
           V +L+         G   S  A+DR   T         LA    +   L+ LLD  A   
Sbjct: 62  VRLLVT-------AGA--SPMALDRHGQT------AAHLACEHRSPTCLRALLDSAAPGT 106

Query: 267 M 267
           +
Sbjct: 107 L 107

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 78/221 (35%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVE 117
           + N  D + R+ L AA+  +   +  IL+     ++  +       L+ A +      +E
Sbjct: 50  DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
            L+                                    ++N VD L +S+L  A    N
Sbjct: 110 DLIN-------SHA-------------------------DVNAVDDLGKSALHWAAAVNN 137

Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
           ++   +LL+   N  +++      L  A +E   E  ++LL+       H          
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-------HF--------- 181

Query: 231 RSSSTFTPDI--------TPLILAAHMNNYEILKILLDRGA 263
                   +          P  +A    +++I+++L +   
Sbjct: 182 -------ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.6 bits (156), Expect = 3e-12
 Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 60/210 (28%)

Query: 68  NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 120
           N  D    ++L  A      +    LLE   +  ++D      L  A+  +     +IL+
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78

Query: 121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL 180
                   +                           +++       + LI A       +
Sbjct: 79  R-------NRAT------------------------DLDARMHDGTTPLILAARLAVEGM 107

Query: 181 INILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
           +  L+    ++   D     AL  A     V+A  +LL+       +G   + +  +   
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-------NGA--NKDMQNNR- 157

Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
                + TPL LAA   +YE  K+LLD  A
Sbjct: 158 -----EETPLFLAAREGSYETAKVLLDHFA 182

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.4 bits (114), Expect = 9e-07
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 39/137 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           ++N VD L +S+L  A    N++   +LL+   N  +++      L  A +E   E  ++
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+       H                           N +  D ++R     A E  + 
Sbjct: 177 LLD-------HFA-------------------------NRDITDHMDRLPRDIAQERMHH 204

Query: 179 ELINILLEYNIQVKDAL 195
           +++ +L EYN+     L
Sbjct: 205 DIVRLLDEYNLVRSPQL 221

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD---ALLHAIKEEYVEAVEILL 120
           +    +    ++L  A +   ++    L        +      +  A+     + V  L+
Sbjct: 45  SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALV 104

Query: 121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEV--FNINCVDPLNRSSLIAAIE--NE 176
           E         +      +G+    +L+E  D+ EV     +      +++L   +    E
Sbjct: 105 E-------GAK-----ERGQMPESLLNE-CDEREVNEIGSHVKHCKGQTALHWCVGLGPE 151

Query: 177 NIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV 229
            +E+I IL++   +   KD      L+ A++    EA++++++              +  
Sbjct: 152 YLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS--KSS--LRLDYA 207

Query: 230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           ++         + L  A  +N  ++    ++ G 
Sbjct: 208 NKQ------GNSHLHWAILINWEDVAMRFVEMGI 235

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 45/214 (21%)

Query: 66  NINCVDPLNRSSLIAAIE--NENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAV 116
             +      +++L   +    E +E+I IL++   +   KD      L+ A++    EA+
Sbjct: 130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREAL 189

Query: 117 EILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE 176
           +++++                                    ++  +    S L  AI   
Sbjct: 190 DLMMDTVPS--KSSL-------------------------RLDYANKQGNSHLHWAILIN 222

Query: 177 NIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV 229
             ++    +E   ++ ++D      L  +++   V   + LL+  +   +   PY     
Sbjct: 223 WEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTT 282

Query: 230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                     +  +  AA  +  E+L++L ++  
Sbjct: 283 --VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 51/222 (22%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY-NIQVKDALLHAIKEEYVEAVEILLEWEE 124
             +      +  +  A+     +L+  L+E    + +       + +  E  EI      
Sbjct: 78  VHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSH--- 132

Query: 125 KIHVHGQPYVSENKGRTIFMM-LDELKDQPEVF--------NINCVDPLNRSSLIAAIEN 175
                    V   KG+T     +    +  E+         +    D  + + L+ A+E 
Sbjct: 133 ---------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF 183

Query: 176 ENIELINILLEY-------NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
            N E ++++++         +   +      L  AI   + +     +E    +      
Sbjct: 184 RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV------ 237

Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
                 D           PL L+       + K LL +    
Sbjct: 238 ---NMEDNE------HTVPLYLSVRAAMVLLTKELLQKTDVF 270

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 9e-10
 Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 66/216 (30%)

Query: 58  LKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKE 110
           + D P++ N    D  N   +  A      + +  L+E   +  +++     AL  A K 
Sbjct: 5   MTDFPKL-NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 111 EYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLI 170
             V+  + L          G+                           +      +  + 
Sbjct: 64  GCVDTAKYLAS-------VGE-------------------------VHSLWH--GQKPIH 89

Query: 171 AAIENENIELINILLEY-NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV 229
            A+     +L+  L+E    + +       + +  E  EI        H  GQ       
Sbjct: 90  LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGS---HVKHCKGQ------- 139

Query: 230 DRSSSTFTPDITPLILAAHMNNY--EILKILLDRGA 263
                      T L     +     E++KIL+  GA
Sbjct: 140 -----------TALHWCVGLGPEYLEMIKILVQLGA 164

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 33/161 (20%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            ++  +    S L  AI     ++    +E   ++ ++D      L  +++   V   + 
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+  +   +   PY   + G T+                     +    + AA +    
Sbjct: 263 LLQKTDVFLIQACPY---HNGTTV----------------LPDRVVWLDFVPAAADPSKQ 303

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
           E++ +L E    +           +   K+       + L 
Sbjct: 304 EVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 61/211 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD---ALLHAIKEEYVEAVEILL 120
           +    D    S+   AI + N+ L+  LL       + +    L  A   E  + V+ILL
Sbjct: 23  DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82

Query: 121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL 180
                    G                          + +  D    ++L  A+++ N++ 
Sbjct: 83  F-------SGL-------------------------DDSQFDDKGNTALYYAVDSGNMQT 110

Query: 181 INILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRS 232
           + + ++    +          +  HA+    V  V   L                     
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-------EI------PSTFD 157

Query: 233 SSTFTPDITPLILAAHMNNYEILKILLDRGA 263
            +     ++ + +     + +++ +LLD   
Sbjct: 158 LAI---LLSCIHITIKNGHVDMMILLLDYMT 185

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 22/215 (10%), Positives = 68/215 (31%), Gaps = 73/215 (33%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
           + +  D    ++L  A+++ N++ + + ++    +          +  HA+    V  V 
Sbjct: 87  DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
             L                    +                           +   I+N +
Sbjct: 147 YFLS-------EIPSTFDLAILLS--------------------------CIHITIKNGH 173

Query: 178 IELINILLEY--NIQVKD-----ALLH-AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV 229
           ++++ +LL+Y  +    +       +  AI  + +E ++ L +       +         
Sbjct: 174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-------YD-------- 218

Query: 230 DRSSSTFTPDI-TPLILAAHMNNYEILKILLDRGA 263
                    +I +  +    +++ EI K+++++  
Sbjct: 219 --------INIYSANLENVLLDDAEIAKMIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 23/100 (23%)

Query: 170 IAAIENENIELINILLE-YNIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
           ++ I     + +   L   +    D     A  +AI +  V  V  LL            
Sbjct: 4   LSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK------ 57

Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                ++        +  PL  AA + + +I+KILL  G 
Sbjct: 58  ---NLLE--------NEFPLHQAATLEDTKIVKILLFSGL 86

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 47/222 (21%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           N        RS L AA E  ++++ ++L++   NI          L+ A +  ++EAV+ 
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 119 LLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKDQPEV---------FNINCVDPLNRSS 168
           L++        G      + +G T   +  + K   EV          ++NC D    + 
Sbjct: 63  LIK-------AGALVDPKDAEGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTP 114

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           +I A E ++++L+ +LL    +I ++D      L  A     V+  EILL          
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-------AK 167

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 AV+    +      PL +AA  N Y+ + + L R +
Sbjct: 168 --CDLHAVNIHGDS------PLHIAARENRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 47/222 (21%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           NI+      R+ L+ A EN ++E +  L++    +  KD      L  A K+ + E V+ 
Sbjct: 36  NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95

Query: 119 LLEWEEKIHVHGQPYVSE--NKGRTIFMMLDELKDQPEVF--------NINCVDPLNRSS 168
           LL        +GQ  V+   + G T  M+        ++         +IN  D      
Sbjct: 96  LLS-------NGQMDVNCQDDGGWTP-MIWATEYKHVDLVKLLLSKGSDINIRDNEENIC 147

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           L  A  +  +++  ILL    ++   +      L  A +E   + V + L  +  +    
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV---- 203

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                   ++   T      PL  A+  +       +     
Sbjct: 204 -----TLKNKEGET------PLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.9 bits (123), Expect = 9e-08
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 22/115 (19%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
           N        RS L AA E  ++++ ++L++   NI          L+ A +  ++EAV+ 
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT 264
           L++    +         +  D   ST       L LAA   +YE+++ LL  G  
Sbjct: 63  LIKAGALV---------DPKDAEGST------CLHLAAKKGHYEVVQYLLSNGQM 102

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.1 bits (165), Expect = 5e-13
 Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 52/243 (21%)

Query: 40  LLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--N 97
           L  A  G+   +  +L  L       N +  D    + L  A     + ++ +LL++  +
Sbjct: 29  LEAARSGNEEKLMALLTPLN-----VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 98  IQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKD 151
           +  KD      L +A    + E  E+LL+       HG      +    T        K+
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLK-------HGACVNAMDLWQFTPLHEAAS-KN 135

Query: 152 QPEVF--------NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEY 203
           + EV         +   V+   +S++  A   E  E +    + +     +LL A +E  
Sbjct: 136 RVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH-----SLLQAAREAD 190

Query: 204 VEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAA---HMNNYEILKILLD 260
           +  V+  L       +           +   +     T L  A    H    ++ ++LL 
Sbjct: 191 LAKVKKTLA------LEI------INFKQPQS---HETALHCAVASLHPKRKQVAELLLR 235

Query: 261 RGA 263
           +GA
Sbjct: 236 KGA 238

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 43/215 (20%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            +N +D    + L  A     +E+ ++LL +  +  + +     A+  A   E  E +  
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY 175

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN--- 175
             +    +         E     +   L                  + ++L  A+ +   
Sbjct: 176 EFKGHSLLQ-----AAREADLAKVKKTLALEII------NFKQPQSHETALHCAVASLHP 224

Query: 176 ENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA 228
           +  ++  +LL    N+  K+      L  A +  + + +E+L +   K+          A
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM---------NA 275

Query: 229 VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +D          T L  AA   + +  ++LL  G+
Sbjct: 276 LDSL------GQTALHRAALAGHLQTCRLLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 36/216 (16%), Positives = 59/216 (27%), Gaps = 64/216 (29%)

Query: 66  NINCVDPLNRSSL-IAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVE 117
                    +  L  AA      +L+ +L     N    D      L  A     V  V+
Sbjct: 16  KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
           +LL+       HG                          +++  D      L  A    +
Sbjct: 76  LLLQ-------HG-------------------------ADVHAKDKGGLVPLHNACSYGH 103

Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYSWEAV 229
            E+  +LL++   +   D      L  A  +  VE   +LL        HG  P     V
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS-------HGADP---TLV 153

Query: 230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
           +    +       + +A      E L       + L
Sbjct: 154 NCHGKS------AVDMAPTPELRERLTYEFKGHSLL 183

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 46/229 (20%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           +         +  + A    +++L+ + L    ++   D     A + A     V+A++ 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 119 LLEW----EEKIHVHGQPYVSENKGRTIFM---------MLDELKDQPEVFNINCVDPLN 165
           L +       +             G T  M         +L  L D+    ++N  D + 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA-DVNACDNMG 182

Query: 166 RSSLIAAIENENI----ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWE 214
           R++LI A+ + +      + ++LL++  ++ V+       L+ A++++++  V+ LLE +
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE-Q 241

Query: 215 EKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           E I +          D          T L+LA  +   +I ++L  RGA
Sbjct: 242 EHIEI-------NDTDSD------GKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 53/206 (25%)

Query: 74  NRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEK 125
           +   LI A++NE+++L+  LLE   N+  ++       L +A++    + VE+LL     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR---- 60

Query: 126 IHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL 185
              HG                          +         +  + A    +++L+ + L
Sbjct: 61  ---HGA-------------------------DPVLRKKNGATPFLLAAIAGSVKLLKLFL 92

Query: 186 EY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTP 238
               ++   D     A + A     V+A++ L +    +++  +    +   R       
Sbjct: 93  SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA--- 149

Query: 239 DITPLILAAHMNNYEILKILLD-RGA 263
             T L+ AA   + E+LKILLD  GA
Sbjct: 150 --TALMDAAEKGHVEVLKILLDEMGA 173

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 45/228 (19%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            ++  + L +++L  A        +  L      + V +     AL  A +        +
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 119 LLE-------WEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF--------NINCVDP 163
           LL+            ++      + +       +  +   + E           +   + 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156

Query: 164 LNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEE 215
              + L  A+ +++ E++ +L +   ++   +       L  A++ +    +E+LL+   
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

Query: 216 KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                       A            TPL  A    N  + ++L   GA
Sbjct: 217 DPT---------ARMYG------GRTPLGSALLRPNPILARLLRAHGA 249

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 78/228 (34%)

Query: 67  INCVDPLNRSSLIAAIENENIELINILLEY-----NIQVKD-----ALLHAIKEEYVEAV 116
              V     ++L  A+ +++   ++ LL +      + +++     AL  A        V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 117 EILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE 176
           E L          G                           +   +    ++L  A    
Sbjct: 62  EKLYA-------AGA-------------------------GVLVAERGGHTALHLACRVR 89

Query: 177 NIELINILLEY----NIQVKD-----------------ALLHAIKEEYVEAVEILLEWEE 215
                 +LL+          D                 A + +      E      +W  
Sbjct: 90  AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

Query: 216 KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           ++         EA +          TPL +A    + E++++L D GA
Sbjct: 150 QL---------EAENYD------GHTPLHVAVIHKDAEMVRLLRDAGA 182

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 20/225 (8%), Positives = 62/225 (27%), Gaps = 55/225 (24%)

Query: 9   ELL---GSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVF 65
            +L      H     D  +    +           + ++           ++ +      
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL----- 149

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
            +   +    + L  A+ +++ E++ +L +   ++   +       L  A++ +    +E
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
           +LL+        G                          +        R+ L +A+   N
Sbjct: 210 LLLK-------AGA-------------------------DPTARMYGGRTPLGSALLRPN 237

Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEE 215
             L  +L  +                 +  +   +  +   E+++
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.9 bits (149), Expect = 4e-11
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 64/214 (29%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVE 117
           + N  D + R+ L AA+  +   +  IL+     ++  +       L+ A +      +E
Sbjct: 82  DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
            L+                                    ++N VD L +S+L  A    N
Sbjct: 142 DLIN-------SHA-------------------------DVNAVDDLGKSALHWAAAVNN 169

Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYSWEAV 229
           ++   +LL+   N  +++      L  A +E   E  ++LL+       H       +  
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-------HFANR---DIT 219

Query: 230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           D        D  P  +A    +++I+++L     
Sbjct: 220 DHM------DRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.8 bits (146), Expect = 8e-11
 Identities = 46/236 (19%), Positives = 79/236 (33%), Gaps = 61/236 (25%)

Query: 66  NINCVD-----PL--------NRSSLIAAIENENIELINILLEY-----NIQVKD---AL 104
           ++N        PL           +  +  E +   +I+  +       N   +    AL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 105 LHAIKEEYVEAVEILLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKDQPEVF------- 156
             A +    +A + LLE             + +N GRT         D   VF       
Sbjct: 62  HLAARYSRSDAAKRLLE-------ASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNR 113

Query: 157 --NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAV 207
             +++       + LI A       ++  L+    ++   D     AL  A     V+A 
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173

Query: 208 EILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
            +LL+       +G   + +  +        + TPL LAA   +YE  K+LLD  A
Sbjct: 174 VVLLK-------NGA--NKDMQNNR------EETPLFLAAREGSYETAKVLLDHFA 214

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.8 bits (146), Expect = 8e-11
 Identities = 31/218 (14%), Positives = 66/218 (30%), Gaps = 70/218 (32%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
           ++   D  N + L  A  N  I+L+   +     +           L  A ++ ++  V 
Sbjct: 34  DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
            L++       +G                          + + +D    S +  A +  +
Sbjct: 94  QLMK-------YGA-------------------------DPSLIDGEGCSCIHLAAQFGH 121

Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEY-VEAVEILLEW----EEKIHVHGQPYS 225
             ++  L+    ++ + D      L+ A    + V+   +LL +          H     
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN--- 178

Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                          T L  A    N  ++ +LL+ GA
Sbjct: 179 ---------------TALHWAVLAGNTTVISLLLEAGA 201

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 4e-10
 Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 63/214 (29%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLE--YNIQVKD-----ALLHAIKEEYVEAVEI 118
           ++  +D  +   ++ A +    E    L+E  Y+++  D      L  A     ++ V+ 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDP-LNRSSLIAAIENEN 177
            +         G                           ++ +   LN + L  A    +
Sbjct: 61  YIS-------KG-------------------------AIVDQLGGDLNSTPLHWATRQGH 88

Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
           + ++  L++Y  +  + D      +  A +  +   V  L+         GQ    + +D
Sbjct: 89  LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA-------KGQ--DVDMMD 139

Query: 231 RSSSTFTPDITPLILAAHMNNY-EILKILLDRGA 263
           ++        TPL+ AA+  +  +  ++LL    
Sbjct: 140 QNGM------TPLMWAAYRTHSVDPTRLLLTFNV 167

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 34/206 (16%), Positives = 65/206 (31%), Gaps = 55/206 (26%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           +IN  +    ++L  A  ++N++++  L+E   NI   D      L  A    Y++  E 
Sbjct: 65  DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           L+         G                          ++  V+    + L  A E    
Sbjct: 125 LIS-------QGA-------------------------HVGAVNSEGDTPLDIAEEEAME 152

Query: 179 ELINILLEYN-IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT 237
           EL+   +    + ++ A     +    +A + L                    +S  T  
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND---------VRHAKSGGT-- 201

Query: 238 PDITPLILAAHMNNYEILKILLDRGA 263
                L +AA     E+LK+L+    
Sbjct: 202 ----ALHVAAAKGYTEVLKLLIQARY 223

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 46/218 (21%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           NIN  D      L AA     +++   L+    ++   +      L  A +E   E ++ 
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF-----NINCVDPLNRSSLIAAI 173
            +   + + +       E            L+D  +       N         ++L  A 
Sbjct: 158 EVN-RQGVDIEAARKEEERIM---------LRDARQWLNSGHINDVRHAKSGGTALHVAA 207

Query: 174 ENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYS 225
                E++ +L++   ++ +KD      L  A      EA  IL+E       +      
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-------NLCDM-- 258

Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
            EAV++         T   +A       + ++   +  
Sbjct: 259 -EAVNKV------GQTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 21/112 (18%)

Query: 158 INCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD----ALLHAIKEEYVEAVEILL 211
           +   D   + +        +   +   +      +VK       L A      E V  LL
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 212 EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           E    I+           +         +T L  A   +N +++K L++ GA
Sbjct: 61  ERGADIN---------YANVD------GLTALHQACIDDNVDMVKFLVENGA 97

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 39/122 (31%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
                       L A     + E +  LLE   +I   +     AL  A  ++ V+ V+ 
Sbjct: 33  KTKVKFDDGAVFLAACSSG-DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDR 261
           L+E       +G                 +I         PL  AA     +I + L+ +
Sbjct: 92  LVE-------NG----------------ANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128

Query: 262 GA 263
           GA
Sbjct: 129 GA 130

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 65/213 (30%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            +N +   + S L  A    ++  + ILL++   +          L +A      + V +
Sbjct: 84  AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 143

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+    +         E+   +                           +  A    ++
Sbjct: 144 LLQHGASVQ-------PESDLAS--------------------------PIHEAARRGHV 170

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA-VD 230
           E +N L+ Y  NI  K       L  A + +    V+ LLE        G      A V+
Sbjct: 171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-------SG------ADVN 217

Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +         +PL       + E+  +L+D GA
Sbjct: 218 QGKG----QDSPLHAVVRTASEELACLLMDFGA 246

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.9 bits (141), Expect = 5e-10
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 62/211 (29%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
             + V   + S +  A  + +   +  L+     + +        L  A    ++  V+I
Sbjct: 53  MGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI 110

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+       HG                           +N V     + L  A  + + 
Sbjct: 111 LLK-------HGA-------------------------QVNGVTADWHTPLFNACVSGSW 138

Query: 179 ELINILLEY--NIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRS 232
           + +N+LL++  ++Q +      +  A +  +VE V  L+ +   I         +     
Sbjct: 139 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI---------DHKISH 189

Query: 233 SSTFTPDITPLILAAHMNNYEILKILLDRGA 263
             T      PL LA        +K LL+ GA
Sbjct: 190 LGT------PLYLACENQQRACVKKLLESGA 214

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 26/213 (12%), Positives = 59/213 (27%), Gaps = 66/213 (30%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD------ALLHAIKEEYVEAVEIL 119
           ++  +D   +  +  +      +   I L  N  + D       +  A    +  ++  L
Sbjct: 20  HMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNL 78

Query: 120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIE 179
           +         G                         + +N +   + S L  A    ++ 
Sbjct: 79  IS-------QG-------------------------WAVNIITADHVSPLHEACLGGHLS 106

Query: 180 LINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHV--HGQPYSWEAVD 230
            + ILL++   +          L +A      + V +LL+    +               
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-------- 158

Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                     +P+  AA   + E +  L+  G 
Sbjct: 159 ----------SPIHEAARRGHVECVNSLIAYGG 181

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 60/210 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD----ALLHAIKEEYVEAVEIL 119
            +N V     + L  A  + + + +N+LL++  ++Q +      +  A +  +VE V  L
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSL 176

Query: 120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIE 179
           +        +G                          NI+       + L  A EN+   
Sbjct: 177 IA-------YGG-------------------------NIDHKISHLGTPLYLACENQQRA 204

Query: 180 LINILLEYNIQV-KD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
            +  LLE    V +       L   ++    E   +L+++             +A +   
Sbjct: 205 CVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADT---------QAKNAE- 254

Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
                   P+ L     +      L   GA
Sbjct: 255 -----GKRPVELVPP-ESPLAQLFLEREGA 278

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 43/221 (19%), Positives = 76/221 (34%), Gaps = 64/221 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY-----NIQVKD-----ALLHAIKE---EY 112
           +    +   RS+L  A  N +  ++  +L       +I+  D     AL+        + 
Sbjct: 191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250

Query: 113 VEAVEILLEWEEKIHVHGQPYVSE--NKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLI 170
           V + ++L+E   K+   G         KGRT                          +L 
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRT--------------------------ALH 284

Query: 171 AAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
            A +  N+ ++  L+     N   +D      ++ A +E  +E V  L++        G 
Sbjct: 285 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-------QG- 336

Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
             S EAVD +      D T   LA   N++ I+ I      
Sbjct: 337 -ASVEAVDAT------DHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 39/228 (17%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD------ALLHAIKEEYVEAVEIL 119
                +P +   L       +  +   +   ++ + D       L         E  E L
Sbjct: 86  IPTEPEPESPIKLHTEAAG-SYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDL 144

Query: 120 LEWEEKIHVHGQPYVSE--NKGRTIFMMLDELKDQPEVF--------NINCVDPLNRSSL 169
           +  E K  +     V+       T  M+      +  +         +    +   RS+L
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVL-ARRRRLVAYLMKAGADPTIYNKSERSAL 203

Query: 170 IAAIENENIELINILLEY-----NIQVKD-----ALLHAIKE---EYVEAVEILLEWEEK 216
             A  N +  ++  +L       +I+  D     AL+        + V + ++L+E   K
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263

Query: 217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILL-DRGA 263
           +   G     ++            T L  AA ++N  I+K L+ ++G+
Sbjct: 264 VDYDGAARK-DSEKYKGR------TALHYAAQVSNMPIVKYLVGEKGS 304

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 68/223 (30%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           ++N +D    + L+ A+      L+  L++   +  + +     AL  A        +  
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 217

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           +L          +                         +I  +D    ++L+    NE  
Sbjct: 218 MLN-------STKLKG----------------------DIEELDRNGMTALMIVAHNEGR 248

Query: 179 EL-------------INILLEYNIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVH 220
           +              ++         +      AL +A +   +  V+ L+  E+  +  
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG-EKGSNK- 306

Query: 221 GQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 +  D          TP++LAA     E++  L+ +GA
Sbjct: 307 ------DKQDED------GKTPIMLAAQEGRIEVVMYLIQQGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 30/225 (13%), Positives = 60/225 (26%), Gaps = 56/225 (24%)

Query: 52  RKMLDELKDQPEVFN------INCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALL 105
           R+M++     P + N       +     ++ SL+ A  +  I+     L++         
Sbjct: 9   RRMINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY--SLYPNP 66

Query: 106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN 165
                      +           + Q                              +P +
Sbjct: 67  QGYGNGNDFLGDFNHT-------NLQ-------------------------IPTEPEPES 94

Query: 166 RSSLIAAIENENIELINILLEYNIQVKD------ALLHAIKEEYVEAVEILLEWEEKIHV 219
              L       +  +   +   ++ + D       L         E  E L+  E K  +
Sbjct: 95  PIKLHTEAAG-SYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 153

Query: 220 -HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
             G      A+D        + TPL+LA       ++  L+  GA
Sbjct: 154 AAGA--DVNAMDCD------ENTPLMLAVLARRRRLVAYLMKAGA 190

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 51/221 (23%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD----------ALLHAIKEEYV 113
            ++    +  ++L  A   +N+E   +L+E    +  +           AL  A+  + V
Sbjct: 29  EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88

Query: 114 EAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAI 173
             V  LL         G   VS                    +  + +       L  A 
Sbjct: 89  NLVRALLA-------RG-ASVSARA-----------TGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 174 ENENIELINILLEY--NIQVKD-----ALLHAI----KEEYVEAVEILLEWEEKIHVHGQ 222
              + E++ +L+E+  +I+ +D      L   I    K    +   +LL ++   H+   
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                             TP  LA    N  + + L+ +  
Sbjct: 190 ELVPNNQGL---------TPFKLAGVEGNIVMFQHLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 25/105 (23%)

Query: 170 IAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           +AA EN +++ ++ LL++    +  +      AL  A   + +EA  +L+E         
Sbjct: 9   LAAKEN-DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME-------AA 60

Query: 222 ---QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                    +            T L +A    N  +++ LL RGA
Sbjct: 61  PELVFEPMTSELYE------GQTALHIAVINQNVNLVRALLARGA 99

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 27/221 (12%), Positives = 65/221 (29%), Gaps = 72/221 (32%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            +N  + L ++ L  A+     E+   LL    + +++D      L  A ++  + +V +
Sbjct: 37  FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 96

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           L +                                    +   +    + L  A  +  +
Sbjct: 97  LTQ-------SC-------------------TTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 179 ELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
            ++ +L+    ++  ++      AL  A+  +  + V +LL+        G         
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-------CG--------- 174

Query: 231 RSSSTFTPDI--------TPLILAAHMNNYEILKILLDRGA 263
                   D+        +P  L     +  I + L     
Sbjct: 175 -------ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 70/213 (32%)

Query: 75  RSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEAVEILLEWE 123
            S L  AI +E   L   ++         +  ++      L  A+     E  E LL   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-- 66

Query: 124 EKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI 183
                 G                          +    D    + L  A E   +  + +
Sbjct: 67  -----AGC-------------------------DPELRDFRGNTPLHLACEQGCLASVGV 96

Query: 184 LLEY--------NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
           L +          ++  +      L  A    Y+  VE+L+     ++            
Sbjct: 97  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR---- 152

Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                     T L LA  + N +++ +LL  GA
Sbjct: 153 ----------TALHLAVDLQNPDLVSLLLKCGA 175

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 47/181 (25%)

Query: 43  AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQV 100
            E+G  A+V  +            +   +    + L  A  +  + ++ +L+    ++  
Sbjct: 86  CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145

Query: 101 KD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE 154
           ++      AL  A+  +  + V +LL+        G                        
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLK-------CG------------------------ 174

Query: 155 VFNINCVDPLNRSSLIAAIENENIELINILLEY-------NIQVKDALLHAIKEEYVEAV 207
             ++N V     S         +  +   L +          + +D   +  + E+ E  
Sbjct: 175 -ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

Query: 208 E 208
           E
Sbjct: 234 E 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 26/117 (22%)

Query: 166 RSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEAVEILLEWE 214
            S L  AI +E   L   ++         +  ++      L  A+     E  E LL   
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-- 66

Query: 215 EKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV 271
                 G     E  D   +T      PL LA        + +L     T  +   +
Sbjct: 67  -----AG--CDPELRDFRGNT------PLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 56.2 bits (137), Expect = 7e-10
 Identities = 46/218 (21%), Positives = 70/218 (32%), Gaps = 77/218 (35%)

Query: 65  FNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVE 117
           F  N  D  NR+ L+ A        I+ L+E    ++ KD     AL+ A+K   +   E
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
            LL         G                          N+N  D   ++ L+ +I    
Sbjct: 86  KLLS-------KGS-------------------------NVNTKDFSGKTPLMWSIIFGY 113

Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
            E+   LLE+  N+  ++      L+ A K    E V+ LLE        G         
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-------LG--------- 157

Query: 231 RSSSTFTPDI--------TPLILAAHMNNYEILKILLD 260
                   DI        T    A      E++KI  +
Sbjct: 158 -------ADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 50.1 bits (121), Expect = 9e-08
 Identities = 40/195 (20%), Positives = 64/195 (32%), Gaps = 75/195 (38%)

Query: 89  LINILLEYNIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIF 143
            IN  L++    +D      L+ A       A++ L+E       +              
Sbjct: 19  SINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVE-------NF------------- 58

Query: 144 MMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALL 196
                         +   D    ++LI A++N  + +   LL    N+  KD      L+
Sbjct: 59  ------------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106

Query: 197 HAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAH 248
            +I   Y E    LLE       HG                 ++        TPLI+A+ 
Sbjct: 107 WSIIFGYSEMSYFLLE-------HG----------------ANVNDRNLEGETPLIVASK 143

Query: 249 MNNYEILKILLDRGA 263
               EI+K LL+ GA
Sbjct: 144 YGRSEIVKKLLELGA 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 61/204 (29%)

Query: 74  NRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKI 126
           N  S+        +  +   +E    I   D      L+ A     +  VE LL+     
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ----- 57

Query: 127 HVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE 186
             +G                          +   +     S+L  A      +++ +LL+
Sbjct: 58  --NGA-------------------------DPQLLGKGRESALSLACSKGYTDIVKMLLD 90

Query: 187 Y--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD 239
              ++   D      LL+A+   +V+ V++LLE                   S       
Sbjct: 91  CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP---------TIETDSGYN---- 137

Query: 240 ITPLILAAHMNNYEILKILLDRGA 263
              + LA  +    + +++     
Sbjct: 138 --SMDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 46/161 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            IN  D    + L+ A  +  I ++  LL+   + Q+       AL  A  + Y + V++
Sbjct: 28  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+        G                          ++N  D    + L+ A+   ++
Sbjct: 88  LLD-------CGV-------------------------DVNEYDWNGGTPLLYAVHGNHV 115

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
           + + +LLE   +  ++      ++  A+   Y    +++  
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 60/198 (30%)

Query: 78  LIAAIENENIELINILLEYNIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 133
            +   ++ +             V          A ++   +A+  LLE            
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE------------ 66

Query: 134 VSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQV 191
                 R                +++ VD   R++L+      + + + +L E   ++  
Sbjct: 67  -----DR----------------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105

Query: 192 KD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL 245
           +D      AL  A      E VE L+E    I         E  D          T L L
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADI---------EVEDERGL------TALEL 150

Query: 246 AAHMNNYEILKILLDRGA 263
           A  +         +  G 
Sbjct: 151 AREILKTTPKGNPMQFGR 168

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 67/210 (31%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
           +++ VD   R++L+      + + + +L E   ++  +D      AL  A      E VE
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
            L+E        G                          +I   D    ++L  A E   
Sbjct: 129 ALVE-------LGA-------------------------DIEVEDERGLTALELAREILK 156

Query: 178 IELINILLEY--NIQVKD--ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
                  +++   I ++    +L     EY E  EI+ +        G+           
Sbjct: 157 TTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK-----RGKGK----------- 200

Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
                      L    +  +   +     A
Sbjct: 201 -------DVEYLVRWKDGGDCEWVKGVHVA 223

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 23/152 (15%)

Query: 66  NINCVDPLN-RSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVE 117
           +++  D     ++L  A      E++  L+E   +I+V+D     AL  A +        
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 161

Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
             +++  +I             + I ++  ++ +  EV  I       +         + 
Sbjct: 162 NPMQFGRRI----------GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDG 211

Query: 178 IELINILLEY--NIQVKD---ALLHAIKEEYV 204
            +   +   +      KD    L +A+ E  +
Sbjct: 212 GDCEWVKGVHVAEDVAKDYEDGLEYAVAESVI 243

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 59/199 (29%)

Query: 78  LIAAIENENIELINILLEY--NIQVKDAL----LHAIKEEYVEAVEILLEWEEKIHVHGQ 131
           L +A    ++E +  LL+   N+  ++      L  +K    E    LL         G 
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL-------RGA 61

Query: 132 PYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NI 189
                                    N +  D    + +  A     ++ +  LLE+  ++
Sbjct: 62  -------------------------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96

Query: 190 QVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLI 244
            ++D      L  A KE ++  VE L++       H    +    +          T   
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVK-------HTAS-NVGHRNHKGD------TACD 142

Query: 245 LAAHMNNYEILKILLDRGA 263
           LA      E++ ++   GA
Sbjct: 143 LARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.4 bits (109), Expect = 2e-06
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 39/123 (31%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
           N+N  +   R++L       N E+   LL    N  +KD      +  A +  +++ ++ 
Sbjct: 30  NVNAQNGFGRTALQVMKLG-NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDR 261
           LLE               A          D+         PL LAA   +  +++ L+  
Sbjct: 89  LLE-------FQ------A----------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

Query: 262 GAT 264
            A+
Sbjct: 126 TAS 128

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.3 bits (106), Expect = 6e-06
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 48/162 (29%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           N+N  +   R++L       N E+   LL    N  +KD      +  A +  +++ ++ 
Sbjct: 30  NVNAQNGFGRTALQVMKLG-NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LLE                                   ++N  D      L  A +  ++
Sbjct: 89  LLE-------FQ-------------------------ADVNIEDNEGNLPLHLAAKEGHL 116

Query: 179 ELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLE 212
            ++  L+++   N+  ++     A   A      E V ++  
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 27/213 (12%), Positives = 49/213 (23%), Gaps = 63/213 (29%)

Query: 74  NRSSLIAAIENENIELINILLEYNIQVKD----------ALLHAIKEEYVEAVEILLEWE 123
              ++ AA      E    L E   + K+           L +   E   +    L+   
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-- 63

Query: 124 EKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN------EN 177
                 G                          +I        +      +         
Sbjct: 64  -----KG-------------------------ADIKSRTKEGTTLFFPLFQGGGNDITGT 93

Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
            EL  I LE   +I          +   I   +V+  E++  ++      G        D
Sbjct: 94  TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL--LIKD 151

Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +        +T L           LK++ D   
Sbjct: 152 KW------GLTALEFVKRCQKPIALKMMEDYIK 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 48/221 (21%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD--------ALLHAIKEEYVEA 115
            +   D   R  L  ++  +  E+ + LL    N+ + D            A     +E 
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87

Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF--------NINCVDPLNRS 167
           V+ L +   K  ++       N+G T   +    K   EV         ++   D  N+ 
Sbjct: 88  VKSLYDRPLKPDLN----KITNQGVTCLHLAVG-KKWFEVSQFLIENGASVRIKDKFNQI 142

Query: 168 SLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHV 219
            L  A    +++LI +L       +  +D      L HA+ E + +A  +L+E       
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE------K 196

Query: 220 HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
           +G    ++ VD              +A +    ++ K  L+
Sbjct: 197 YGA--EYDLVDNK------GAKAEDVALN---EQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.3 bits (124), Expect = 6e-08
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 66/204 (32%)

Query: 79  IAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQ 131
            A +ENE  ++  +L      +  KD      L  ++  +  E    LL          +
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-------KME 60

Query: 132 PYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN---RSSLIAAIENENIELINILLEY- 187
                                    N+N  D  +    +    A    N+E++  L +  
Sbjct: 61  -------------------------NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 188 ---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD 239
              ++          L  A+ +++ E  + L+E       +G   S    D+ +      
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-------NG--ASVRIKDKFNQI---- 142

Query: 240 ITPLILAAHMNNYEILKILLDRGA 263
             PL  AA + + +++++L   G 
Sbjct: 143 --PLHRAASVGSLKLIELLCGLGK 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 53.2 bits (129), Expect = 8e-09
 Identities = 34/206 (16%), Positives = 75/206 (36%), Gaps = 66/206 (32%)

Query: 78  LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 130
           L AA + +  ++  IL +    +   D      L  A+    +E  + L++        G
Sbjct: 10  LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-------RG 62

Query: 131 QPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--- 187
                                     +IN  + ++ S  + A      E++  +L++   
Sbjct: 63  -------------------------ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97

Query: 188 NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITP 242
           ++   +     AL+ A ++ +++ V++LLE        G+    +  +    T       
Sbjct: 98  DLNKHNRYGGNALIPAAEKGHIDNVKLLLE-------DGRE-DIDFQNDFGYT------A 143

Query: 243 LILAAHMNNY-----EILKILLDRGA 263
           LI A  +        +I+K+L++ GA
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGA 169

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 66/214 (30%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            ++ VD    + L  A+ N +IE+   L++   +I +++       L+A  +   E +  
Sbjct: 31  QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAY 90

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           +L+       H  P                        ++N  +    ++LI A E  +I
Sbjct: 91  MLK-------HATP------------------------DLNKHNRYGGNALIPAAEKGHI 119

Query: 179 ELINILLEY---NIQVKD-----ALLHAI-----KEEYVEAVEILLEWEEKIHVHGQPYS 225
           + + +LLE    +I  ++     AL+ A+      + Y + V++L+E             
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-------- 171

Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILL 259
               D S        T +  A      EI KIL 
Sbjct: 172 -SIKDNSGR------TAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 24/145 (16%), Positives = 61/145 (42%), Gaps = 29/145 (20%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVE 117
           +IN  + ++ S  + A      E++  +L++   ++   +     AL+ A ++ +++ V+
Sbjct: 64  DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 118 ILLEWEEKIHVHGQPYVSE--NKGRTIFMM----LDELKDQPEVF--------NINCVDP 163
           +LLE        G+  +    + G T  +      +  +   ++         + +  D 
Sbjct: 124 LLLE-------DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN 176

Query: 164 LNRSSLIAAIENENIELINILLEYN 188
             R+++  A +    E+  IL +YN
Sbjct: 177 SGRTAMDYANQKGYTEISKILAQYN 201

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 28/198 (14%), Positives = 53/198 (26%), Gaps = 60/198 (30%)

Query: 78  LIAAIENENIELINILLEYNIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 133
            +   ++ +             V          A ++   +A+  LL          +  
Sbjct: 18  YLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL--------EDR-- 67

Query: 134 VSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQV 191
                                  +++ VD   R++L+      + + + +L E   ++  
Sbjct: 68  -----------------------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104

Query: 192 KD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL 245
           +D      AL  A      E VE L+E    I         E  D          T L L
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADI---------EVEDERGL------TALEL 149

Query: 246 AAHMNNYEILKILLDRGA 263
           A  +         +  G 
Sbjct: 150 AREILKTTPKGNPMQFGR 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 62/205 (30%)

Query: 74  NRSSLIAAIENENIELINILLEYN---IQVKD-----ALLHAIKEEYVEAVEILLEWEEK 125
           +  S+        ++ +   L      +   D      L+ A     +E V  LLE    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---- 57

Query: 126 IHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL 185
               G                          + + +     S+L  A      +++ +LL
Sbjct: 58  ---WGA-------------------------DPHILAKERESALSLASTGGYTDIVGLLL 89

Query: 186 EY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTP 238
           E   +I + D      LL+A++  +V+ VE LL     +              S      
Sbjct: 90  ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL---------TTEADSGY---- 136

Query: 239 DITPLILAAHMNNYEILKILLDRGA 263
             TP+ LA  +   ++ +++ +   
Sbjct: 137 --TPMDLAVALGYRKVQQVIENHIL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.1 bits (121), Expect = 5e-08
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 63/204 (30%)

Query: 75  RSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKI 126
              L+ A +  ++E +  L      N +  +      L  A     V  VE LL+     
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----- 63

Query: 127 HVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE 186
             HG                          +++  D      L  A    + E+  +L++
Sbjct: 64  --HGA-------------------------DVHAKDKGGLVPLHNACSYGHYEVAELLVK 96

Query: 187 Y--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD 239
           +   + V D      L  A  +   E  ++LL+       HG        +R  +     
Sbjct: 97  HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-------HGA--DPTKKNRDGN----- 142

Query: 240 ITPLILAAHMNNYEILKILLDRGA 263
            TPL L     + +I  +L    A
Sbjct: 143 -TPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.3 bits (106), Expect = 7e-06
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 45/160 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           N   ++    + L  A     + ++  LL++  ++  KD      L +A    + E  E+
Sbjct: 34  NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           L++       HG                           +N  D    + L  A      
Sbjct: 94  LVK-------HGA-------------------------VVNVADLWKFTPLHEAAAKGKY 121

Query: 179 ELINILLEY--NIQVKDAL----LHAIKEEYVEAVEILLE 212
           E+  +LL++  +   K+      L  +K+   +  ++L  
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 26/201 (12%), Positives = 56/201 (27%), Gaps = 62/201 (30%)

Query: 78  LIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVH 129
           +       N   + + L+    ++   D      L  A +E     VE+L+         
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-------R 61

Query: 130 GQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-- 187
           G                           IN ++  + + L  A  + + +++  LL+Y  
Sbjct: 62  GA-------------------------RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96

Query: 188 NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITP 242
           +I   +      L +A      +  E L+        +G        ++          P
Sbjct: 97  DINAVNEHGNVPLHYACFWGQDQVAEDLVA-------NGA--LVSICNKYGEM------P 141

Query: 243 LILAAHMNNYEILKILLDRGA 263
           +  A       + +     G 
Sbjct: 142 VDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 59/173 (34%)

Query: 101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINC 160
            D +    +E    AV + L+       + +                         ++N 
Sbjct: 6   MDDIFTQCREGNAVAVRLWLD-------NTEN------------------------DLNQ 34

Query: 161 VDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEW 213
            D    S L  A       ++ +L+     I V +      L  A    + + V+ LL++
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94

Query: 214 EEKIHV---HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +  I+    HG                    PL  A      ++ + L+  GA
Sbjct: 95  KADINAVNEHGN------------------VPLHYACFWGQDQVAEDLVANGA 129

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 46/161 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           ++N  D    S L  A       ++ +L+     I V +      L  A    + + V+ 
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+       +                           +IN V+      L  A      
Sbjct: 91  LLQ-------YK-------------------------ADINAVNEHGNVPLHYACFWGQD 118

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
           ++   L+     + + +      +  A         E   +
Sbjct: 119 QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 26/208 (12%), Positives = 60/208 (28%), Gaps = 57/208 (27%)

Query: 66  NINCVDPLNRSSLIAAIENENIELI--NILLEYNIQVKDALLHAIKEEYVEAVEILLEWE 123
           +I  +  ++ ++           LI  N + E    + + L  A K   +  +   L+  
Sbjct: 37  DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD-- 94

Query: 124 EKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI 183
                +                            +N +D    ++L  A    + +++ +
Sbjct: 95  -----NR-------------------------VGVNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 184 LLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSST 235
           L       +  ++     AL  A  + Y + V++LL         G     +  +     
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-------KGA--RTDLRNIEKKL 175

Query: 236 FTPDITPLILAAHMNNYEILKILLDRGA 263
                    +A +     +LK      A
Sbjct: 176 ------AFDMATNAACASLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 29/170 (17%)

Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDEL--KDQPEVFNINC 160
            +  A+        + L          G      +   T +                +  
Sbjct: 15  KVFRALYTFEPRTPDELYI------EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68

Query: 161 VDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEW 213
                 + L  A +  N+  +   L+    +   D     AL  A    + + VE+L   
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT- 127

Query: 214 EEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +  I +          ++         T L  AA     +I+++LL +GA
Sbjct: 128 QPNIEL-------NQQNKL------GDTALHAAAWKGYADIVQLLLAKGA 164

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 46/220 (20%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
                D  +R++L  A    + E++  LL+    +  KD      L  A      E V+ 
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF--------NINCVDPLNRSSLI 170
           LL         G    + N+     +     K++ E+         N +  D  + +++ 
Sbjct: 92  LLV-------KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144

Query: 171 AAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
            A    N+++++ILL Y  +  ++D      L  A  EE VE  + L+     I++  + 
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK- 203

Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                          + TPL +A       ++   L  G 
Sbjct: 204 --------------EEKTPLQVAK--GGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 24/114 (21%)

Query: 159 NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 211
            CV   N      A   +  EL   +L         D     AL  A    + E VE LL
Sbjct: 3   GCVS--NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 212 EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
           +    +            D +        +PL +AA     EI+K LL +GA +
Sbjct: 61  QLGVPV---------NDKDDA------GWSPLHIAASAGXDEIVKALLVKGAHV 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 22/114 (19%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
           ++N  D    + L  A  N ++E++ +LL+   ++   D      L  A    ++E VE+
Sbjct: 39  DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           LL+       +G      A D          TPL LAA   + EI+++LL  GA
Sbjct: 99  LLK-------NGA--DVNANDME------GHTPLHLAAMFGHLEIVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.0 bits (108), Expect = 4e-06
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 61/196 (31%)

Query: 78  LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 130
           L+ A      + + IL+    ++  +D      L  A    ++E VE+LL+       +G
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-------NG 70

Query: 131 QPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--N 188
                                     ++N VD    + L  A    ++E++ +LL+   +
Sbjct: 71  A-------------------------DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105

Query: 189 IQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPL 243
           +   D      L  A    ++E VE+LL+    +          A D+   T        
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV---------NAQDKFGKT------AF 150

Query: 244 ILAAHMNNYEILKILL 259
            ++    N ++ +IL 
Sbjct: 151 DISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.7 bits (102), Expect = 2e-05
 Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 46/161 (28%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           ++N  D    + L  A  N ++E++ +LL+   ++   D      L  A    ++E VE+
Sbjct: 39  DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+       +G                          ++N  D    + L  A    ++
Sbjct: 99  LLK-------NGA-------------------------DVNANDMEGHTPLHLAAMFGHL 126

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
           E++ +LL+   ++  +D     A   +I     +  EIL +
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.2 bits (98), Expect = 7e-05
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 22/102 (21%)

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           L+ A      + + IL+    ++  +D      L  A    ++E VE+LL+    +    
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV---- 73

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 AVD +       +TPL LAA   + EI+++LL  GA
Sbjct: 74  -----NAVDHA------GMTPLRLAALFGHLEIVEVLLKNGA 104

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 22/117 (18%)

Query: 165 NRSSLIAAIENENIELINILLEY---------NIQVKD------ALLHA---IKEEYVEA 206
           +R S+  A+   N + +  LL +         + + KD       LL A   +     + 
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 207 VEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           + +LL+   K           A    S       T L +A    N  ++ +L++ GA
Sbjct: 73  IALLLDVARKTDS--LKQFVNASYTDSYYK--GQTALHIAIERRNMTLVTLLVENGA 125

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 69/278 (24%)

Query: 31  ALTPQEKRF-----LLVAERGDCATVRKMLDELKDQPE-VFNINCVDP-LNRSSLIAAIE 83
           A     + +          + +C  +  +L  L+   + + +    DP   ++ L+ A+ 
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 84  NE---NIELINILLEY-----------NIQVKD-------ALLHAIKEEYVEAVEILLEW 122
           N      + I +LL+            N    D       AL  AI+   +  V +L+E 
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE- 122

Query: 123 EEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELIN 182
                 +G    +   G           D  +              L  A     + ++ 
Sbjct: 123 ------NGADVQAAANG-----------DFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165

Query: 183 ILLEY-----NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIH-------VHGQPYS 225
            LL+      +I  +D      L   ++                         +H     
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225

Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
            E  +R        +TPL LAA      +L  +L R  
Sbjct: 226 EEITNRK------GLTPLALAASSGKIGVLAYILQREI 257

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.0 bits (108), Expect = 2e-06
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 22/114 (19%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
           ++N  D   R+ L  A  N ++E++ +LLE   ++  KD      L  A +  ++E V++
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           LLE    +          A D++        TPL LAA   + E++K+LL+ GA
Sbjct: 87  LLEAGADV---------NAKDKNGR------TPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.5 bits (104), Expect = 6e-06
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           L  A  N ++E++ +LLE   ++  KD      L  A +  ++E V++LLE    +    
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---- 61

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 A D++        TPL LAA   + E++K+LL+ GA
Sbjct: 62  -----NAKDKN------GRTPLHLAARNGHLEVVKLLLEAGA 92

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 76/202 (37%)

Query: 78  LIAAIENENIELINILLEYNIQV-KD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQ 131
           L+ A      + + IL+        D      L  A +  +    E+LL         G 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-------AGV 58

Query: 132 PYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NI 189
                                    + +    ++R+ L  A    +  ++ +LL++  ++
Sbjct: 59  -------------------------SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93

Query: 190 QVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI---- 240
             KD     AL  A +  + E VE+L++       +G                 D+    
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIK-------YG----------------ADVHTQS 130

Query: 241 ----TPLILAAHMNNYEILKIL 258
               T   ++    N ++ +IL
Sbjct: 131 KFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 47/159 (29%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
                D L  S L  A +  +     +LL    +   +       L  A  E +   VE+
Sbjct: 27  PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+       HG                          ++N  D L  ++L  A E+ + 
Sbjct: 86  LLK-------HGA-------------------------DVNAKDMLKMTALHWATEHNHQ 113

Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEIL 210
           E++ +L++Y  ++  +      A   +I     +  EIL
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.7 bits (107), Expect = 5e-06
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 55/168 (32%)

Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
            LL A +    + V IL+        +G P+ ++  G +                     
Sbjct: 5   KLLEAARAGQDDEVRILMA-------NGAPFTTDWLGTS--------------------- 36

Query: 163 PLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEE 215
           PL+    +AA    +     +LL    +   +       L  A  E +   VE+LL+   
Sbjct: 37  PLH----LAAQYG-HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK--- 88

Query: 216 KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
               HG      A D          T L  A   N+ E++++L+  GA
Sbjct: 89  ----HGA--DVNAKDMLKM------TALHWATEHNHQEVVELLIKYGA 124

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 23/114 (20%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
            +   +PL  + L+ +      +L+  ++    +  + +     AL +A+   + E V+ 
Sbjct: 30  RVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           L++        G   +  A D          TPL  AA  NN ++ K L++ GA
Sbjct: 89  LVQ-------FG--VNVNAADSD------GWTPLHCAASCNNVQVCKFLVESGA 127

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 21/202 (10%), Positives = 53/202 (26%), Gaps = 57/202 (28%)

Query: 75  RSSLIAAIENENIELINILLEY--NIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHV 128
           + SL         +  +  + +   ++        LL +  E   + V+ ++        
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY------- 58

Query: 129 HGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY- 187
                                       + +  +    ++L  A+   + E++  L+++ 
Sbjct: 59  EVD-------------------------DPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93

Query: 188 -NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDIT 241
            N+   D      L  A     V+  + L+E    +          A+  S    T    
Sbjct: 94  VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV---------FAMTYSDM-QTA--A 141

Query: 242 PLILAAHMNNYEILKILLDRGA 263
                      +  + L     
Sbjct: 142 DKCEEMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 28/208 (13%), Positives = 64/208 (30%), Gaps = 65/208 (31%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
            +   +PL  + L+ +      +L+  ++    +  + +     AL +A+   + E V+ 
Sbjct: 30  RVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           L++        G                          N+N  D    + L  A    N+
Sbjct: 89  LVQ-------FGV-------------------------NVNAADSDGWTPLHCAASCNNV 116

Query: 179 ELINILLEY--NIQVKD--------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA 228
           ++   L+E    +                 ++E Y +  + L   +EK+           
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM---------GI 167

Query: 229 VDRSSSTFTPDITPLILAAHMNNYEILK 256
           +++        I  L      N+ E+  
Sbjct: 168 MNKG------VIYALWDYEPQNDDELPM 189

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.0 bits (105), Expect = 5e-06
 Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 24/115 (20%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 208
           + N ++   R  +   +   + ++  +LL +       D       +  A +E +++ + 
Sbjct: 37  DPNALNRFGRRPIQVMMMG-SAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

Query: 209 ILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +L     ++         +  D           P+ LA    + +I + L     
Sbjct: 96  VLHRAGARL---------DVCDAWGRL------PVDLAEEQGHRDIARYLHAATG 135

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.0 bits (105), Expect = 6e-06
 Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 24/115 (20%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 208
           N N  +   R  +   +   +  +  +LL +       D       +  A +E +++ + 
Sbjct: 37  NPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

Query: 209 ILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           +L     ++         +  D           P+ LA  + + ++ + L     
Sbjct: 96  VLHRAGARL---------DVRDAWGRL------PVDLAEELGHRDVARYLRAAAG 135

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 79/249 (31%)

Query: 40  LLVAERGDCATVRKMLDELKDQPEVF-----NINCVDPLNRSSLIAAIENENIELINILL 94
           +L  + G  A +  +L   KD                    S+L  AIE  +++ + +L+
Sbjct: 51  VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV 110

Query: 95  EY--NIQVKD------------------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYV 134
           E   ++ ++                    L  A   +  + V  LLE       +     
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE-------NPHQPA 163

Query: 135 SENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDA 194
                                 ++   D L  + L A +   +          N     A
Sbjct: 164 ----------------------SLEATDSLGNTVLHALVMIAD----------NSPENSA 191

Query: 195 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEI 254
           L+  + +  ++    L    +           E  +         +TPL LAA     EI
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLE---------EISNHQ------GLTPLKLAAKEGKIEI 236

Query: 255 LKILLDRGA 263
            + +L R  
Sbjct: 237 FRHILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 71/210 (33%)

Query: 74  NRSSLIAAIENENIELINILLEY----------NIQVKD-----ALLHAIKEEY---VEA 115
           +R  L + +     E +  LLEY          +   +       L+ A+          
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN 175
           +  LL+ ++                        L +               S+L  AIE 
Sbjct: 62  IMPLLQIDKDSGN-----------------PKPLVNA----QCTDEFYQGHSALHIAIEK 100

Query: 176 ENIELINILLEY--NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
            +++ + +L+E   ++ ++                       + H     Y  E      
Sbjct: 101 RSLQCVKLLVENGADVHLRAC-----------------GRFFQKHQGTCFYFGE------ 137

Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
                   PL LAA    ++++  LL+   
Sbjct: 138 -------LPLSLAACTKQWDVVTYLLENPH 160

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.6 bits (104), Expect = 8e-06
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 24/103 (23%)

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           L  A    +I  +  LL+   +  VKD      L  A    +++ VE+LL+       H 
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-------HK 66

Query: 222 QPYSWEA-VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 A V+ +      + +PL  AA   + +I+K+LL  GA
Sbjct: 67  ------ALVNTTGYQ---NDSPLHDAAKNGHVDIVKLLLSYGA 100

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.9 bits (97), Expect = 7e-05
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 22/114 (19%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
           + N  D    + L  A  + +++++ +LL++   +          L  A K  +V+ V++
Sbjct: 35  DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           LL        +G   S  AV+           P+      +   +L +     +
Sbjct: 95  LLS-------YGA--SRNAVNIFGLR------PVDYTDDESMKSLLLLPEKNES 133

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 70/210 (33%)

Query: 74  NRSSLIAAIENENIELINILLEY------NIQVKD---------ALLHA---IKEEYVEA 115
           NR  L   +   + + +  LL +       +  ++          L  A   +     + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN 175
           + ILL+  EK     +   S                         V    +++L  AIE 
Sbjct: 65  IPILLDIAEKTGNMREFINS---------------------PFRDVYYRGQTALHIAIER 103

Query: 176 ENIELINILLEY--NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
                + +L+E   ++  +                   + E      G+           
Sbjct: 104 RCKHYVELLVEKGADVHAQA-----------RGRFFQPKDEGGYFYFGE----------- 141

Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
                   PL LAA  N   I+  L + G 
Sbjct: 142 -------LPLSLAACTNQPHIVHYLTENGH 164

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 34/250 (13%), Positives = 66/250 (26%), Gaps = 80/250 (32%)

Query: 40  LLVAERGDCATVRKMLDELKDQPEVF-----NINCVDPLNRSSLIAAIENENIELINILL 94
           LL    G   T+  +LD  +    +          V    +++L  AIE      + +L+
Sbjct: 54  LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113

Query: 95  EY--NIQVKD-------------------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 133
           E   ++  +                     L  A        V  L E       +G   
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE-------NGHKQ 166

Query: 134 VSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD 193
                                  ++   D    + L A +   +    N   ++  ++ D
Sbjct: 167 A----------------------DLRRQDSRGNTVLHALVAIADNTRENT--KFVTKMYD 202

Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
            LL          +      E  ++  G                   +PL++AA      
Sbjct: 203 LLL-----IKCAKLFPDTNLEALLNNDGL------------------SPLMMAAKTGKIG 239

Query: 254 ILKILLDRGA 263
           I + ++ R  
Sbjct: 240 IFQHIIRREI 249

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 22/102 (21%)

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           L  A +N + E +  LL    ++  +       L  A K  + E V++LL         G
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-------KG 65

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 A  +  +T      P  LA    ++EI+K+L  +GA
Sbjct: 66  A--DVNARSKDGNT------PEHLAKKNGHHEIVKLLDAKGA 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.6 bits (99), Expect = 3e-05
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 22/102 (21%)

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           L+ A      + + IL+    ++  KD      L  A    ++E VE+LL+       +G
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-------NG 70

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 AVD          TPL LAA + + EI ++LL  GA
Sbjct: 71  A--DVNAVDAI------GFTPLHLAAFIGHLEIAEVLLKHGA 104

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 5e-05
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 70/184 (38%)

Query: 91  NILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELK 150
           +    +   +   LL A +    + V IL+        +G                    
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMA-------NGA------------------- 38

Query: 151 DQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEY 203
                 ++N  D    + L  A  + ++E++ +LL+   ++   D      L  A    +
Sbjct: 39  ------DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92

Query: 204 VEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAHMNNYEIL 255
           +E  E+LL+       HG                 D+        T   ++    N ++ 
Sbjct: 93  LEIAEVLLK-------HG----------------ADVNAQDKFGKTAFDISIGNGNEDLA 129

Query: 256 KILL 259
           +IL 
Sbjct: 130 EILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 39/130 (30%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           ++N  D    + L  A  + ++E++ +LL+   ++   D      L  A    ++E  E+
Sbjct: 39  DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
           LL+       HG                          ++N  D   +++   +I N N 
Sbjct: 99  LLK-------HGA-------------------------DVNAQDKFGKTAFDISIGNGNE 126

Query: 179 ELINILLEYN 188
           +L  IL + N
Sbjct: 127 DLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 46/149 (30%)

Query: 78  LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 130
           L+ A      + + IL+    ++  KD      L  A    ++E VE+LL+       +G
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-------NG 70

Query: 131 QPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--N 188
                                     ++N VD +  + L  A    ++E+  +LL++  +
Sbjct: 71  A-------------------------DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105

Query: 189 IQVKD-----ALLHAIKEEYVEAVEILLE 212
           +  +D     A   +I     +  EIL +
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.4 bits (96), Expect = 4e-05
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 22/105 (20%)

Query: 166 RSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIH 218
           R+ L  A  N ++E++ +LLE   ++  KD      L  A +  ++E V++LLE    + 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV- 61

Query: 219 VHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                    A D++  T      PL LAA   + E++K+LL+ GA
Sbjct: 62  --------NAKDKNGRT------PLHLAARNGHLEVVKLLLEAGA 92

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 52/236 (22%)

Query: 49  ATVRKMLDELKDQ--PEVFNIN-CVDPLNRSSLIAAIENENIELINILLEY--NIQVKD- 102
            +   +L E+ D       N+N  VD    + L       N+EL+  L+++  N    D 
Sbjct: 103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 162

Query: 103 ----ALLHAIKE---EYVEAVEILLEWEEKIHVHGQPYVSE--NKGRTIF---MMLDELK 150
                L+ A+K          E LL+       +  P +    +  RTI    ++   + 
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLD-------YLYPCLILEDSMNRTILHHIIITSGMT 215

Query: 151 DQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEIL 210
                             L+  I  +    I           +      K+  +E +++ 
Sbjct: 216 GCSAAAKYYL------DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 211 LEWEEKIHV---HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 ++    +G                   T L +AA + N  I+  LLD GA
Sbjct: 270 WIIANMLNAQDSNGD------------------TCLNIAARLGNISIVDALLDYGA 307

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.8 bits (97), Expect = 6e-05
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 22/102 (21%)

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
            + A++N +++ +   +    ++          L +A     +E +E LL     I    
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI---- 66

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                 A D+        ITPL+ A +  +   +K+LL +GA
Sbjct: 67  -----NAPDKH------HITPLLSAVYEGHVSCVKLLLSKGA 97

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 25/117 (21%)

Query: 157 NINCVDPLNRS---SLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEA 206
           +         +    L+ A     +E++   ++   +    +     AL +AI       
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI 69

Query: 207 VEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           V+ L+         G   +  + D          TPL  AA  N+  I   L+  GA
Sbjct: 70  VDFLIT-------AGA--NVNSPDSH------GWTPLHCAASCNDTVICMALVQHGA 111

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 25/220 (11%), Positives = 57/220 (25%), Gaps = 68/220 (30%)

Query: 66  NINCVDPLNRS---SLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEA 115
           +         +    L+ A     +E++   ++   +    +     AL +AI       
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI 69

Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN 175
           V+ L+         G                          N+N  D    + L  A   
Sbjct: 70  VDFLIT-------AGA-------------------------NVNSPDSHGWTPLHCAASC 97

Query: 176 ENIELINILLEY--NIQVKD------ALLHA--IKEEYVEAVEILLEWEEKIHVHGQPYS 225
            +  +   L+++   I          A       +E Y +    L + E+ +        
Sbjct: 98  NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-------- 149

Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
              ++      +  +  L   +     + L        T+
Sbjct: 150 -GLMN------SGAVYALWDYS-AEFGDELSFREGESVTV 181

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 23/111 (20%)

Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
           + N  D    S +  A     ++ + +L+E+  ++ V D      +  A++E +   V  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
           L                   D    T      PL LA      +++ IL  
Sbjct: 120 LAA-------ESDL---HRRDARGLT------PLELALQRGAQDLVDILQG 154

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 172 AIENENIELINILLEY--NIQVKD--ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWE 227
              + +    + L+    ++       LL A +    + V IL+     +          
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---------A 51

Query: 228 AVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
           A D++        TPL LAA   + E++K+LL+ GA
Sbjct: 52  AKDKN------GSTPLHLAARNGHLEVVKLLLEAGA 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.36

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-36  Score=252.41  Aligned_cols=216  Identities=20%  Similarity=0.220  Sum_probs=191.9

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      .+.++|++|+..|+.+++++|++.|      ++++.++..|.||||+|+..|+.+++++|+++|++++       ||||+
T Consensus        38 ~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  111 (285)
T 1wdy_A           38 GGWTPLHNAVQMSREDIVELLLRHG------ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME  111 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC------CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHH
Confidence            3467899999999999999999997      8999999999999999999999999999999999884       79999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCC----ccccCCcccHHHHHHhcCCCC-------c-cccccCCCCCCCCHHHHHHH
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQP----YVSENKGRTIFMMLDELKDQP-------E-VFNINCVDPLNRSSLIAAIE  174 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~----~~~~~~~~t~l~~~~~~~~~~-------~-~~~~~~~d~~~~t~L~~a~~  174 (272)
                      |+..++.+++++|+++|++++.....    ...+..|.|||++|+..+...       . +.+++.+|..|.||||+|+.
T Consensus       112 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  191 (285)
T 1wdy_A          112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL  191 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            99999999999999999988732211    011677899999999876532       1 67889999999999999999


Q ss_pred             cCC----HHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHh-cCccCCCCCCcchhhhhhcCCCCCCCCCcH
Q psy11714        175 NEN----IELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYSWEAVDRSSSTFTPDITP  242 (272)
Q Consensus       175 ~g~----~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~  242 (272)
                      .++    .+++++|+++|+++       .||||+|+..++.+++++|++ .|++++               .++..|.||
T Consensus       192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~---------------~~~~~g~t~  256 (285)
T 1wdy_A          192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN---------------DTDSDGKTA  256 (285)
T ss_dssp             CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT---------------CCCTTSCCH
T ss_pred             ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc---------------ccCCCCCcH
Confidence            999    99999999999888       599999999999999999999 899998               788999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy11714        243 LILAAHMNNYEILKILLDRGATLPMPHD  270 (272)
Q Consensus       243 l~~A~~~~~~~iv~~Ll~~ga~~~~~~~  270 (272)
                      ||+|+..++.+++++|+++||+++.+|.
T Consensus       257 l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          257 LLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999999999999885

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.8e-37  Score=254.16  Aligned_cols=218  Identities=14%  Similarity=0.092  Sum_probs=179.1

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCC---cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------h
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFN---INCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------D  102 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~---~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t  102 (272)
                      ..+.++||+|+..|+.+++++|++.+      .+   +|.++..|.||||+|+..|+.+++++|+++|++++       |
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLGFS------AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHH------TTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcC------CCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            45678899999999999999999987      55   88999999999999999999999999999999984       7


Q ss_pred             HHHHHHHcCcHHHHHHHHccccccccCCCC-------ccccCCcccHHHHHHhcCCC--------CccccccCCCCCCCC
Q psy11714        103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQP-------YVSENKGRTIFMMLDELKDQ--------PEVFNINCVDPLNRS  167 (272)
Q Consensus       103 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-------~~~~~~~~t~l~~~~~~~~~--------~~~~~~~~~d~~~~t  167 (272)
                      |||+|+..++.+++++|+++|++.......       ......+.++++.+......        ..+.+++.++..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            999999999999999999998876522111       11123344555554443211        124678899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCC
Q psy11714        168 SLIAAIENENIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD  239 (272)
Q Consensus       168 ~L~~a~~~g~~~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g  239 (272)
                      |||+|+..|+.+++++|+++|+++        .||||+|+..++.+++++|+++|++++               .++..|
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~---------------~~d~~g  225 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT---------------ARMYGG  225 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc---------------ccccCC
Confidence            999999999999999999999887        499999999999999999999999999               788999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        240 ITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       240 ~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      .||||+|+..++.+++++|+++||+++.++..
T Consensus       226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  257 (282)
T 1oy3_D          226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGD  257 (282)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--
T ss_pred             CCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCc
Confidence            99999999999999999999999999998864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.4e-36  Score=257.82  Aligned_cols=208  Identities=20%  Similarity=0.255  Sum_probs=147.6

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCChh-----------
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDP-LNRSSLIAAIENENIELINILLEYNIQVK-----------  101 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------  101 (272)
                      ...+.|+.|+..|++++|+.||+.|      +++|.++. .|+||||+|+..|+.++|++|+++|++++           
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~G------advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~   97 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGG------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFI   97 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCC------CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhH
Confidence            3567899999999999999999997      99998876 59999999999999999999999998761           


Q ss_pred             -----------------------------hHHHHHHHcCcHHHHHHHHccccccccCCCC----ccccCCcccHHHHHHh
Q psy11714        102 -----------------------------DALLHAIKEEYVEAVEILLEWEEKIHVHGQP----YVSENKGRTIFMMLDE  148 (272)
Q Consensus       102 -----------------------------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----~~~~~~~~t~l~~~~~  148 (272)
                                                   ||||+|+..++.+++++|+++|++++.....    ...+..|.||||+|+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~  177 (337)
T 4g8k_A           98 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  177 (337)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred             HHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH
Confidence                                         5888888888888888888888877643221    2234567777777766


Q ss_pred             cCCCC--------c-------------------------------------cccccCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11714        149 LKDQP--------E-------------------------------------VFNINCVDPLNRSSLIAAIENENIELINI  183 (272)
Q Consensus       149 ~~~~~--------~-------------------------------------~~~~~~~d~~~~t~L~~a~~~g~~~~~~~  183 (272)
                      .+...        .                                     +++++.+|..|.||||+|+..|+.++++.
T Consensus       178 ~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~  257 (337)
T 4g8k_A          178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  257 (337)
T ss_dssp             HTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence            53321        0                                     34555556666666666666666666666


Q ss_pred             HHhC-CCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHH
Q psy11714        184 LLEY-NIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEIL  255 (272)
Q Consensus       184 Ll~~-g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv  255 (272)
                      |++. |+++       .||||+|+..|+.+++++|+++|++++                    ..+|||+|+..++.++|
T Consensus       258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n--------------------~~~~L~~A~~~~~~~iv  317 (337)
T 4g8k_A          258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD--------------------CGDLVMTARRNYDHSLV  317 (337)
T ss_dssp             HHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST--------------------TCCHHHHHHHTTCHHHH
T ss_pred             HHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--------------------CCCHHHHHHHcCCHHHH
Confidence            6653 4555       366666666666666666666666655                    23577777777777777


Q ss_pred             HHHHHCCCCCCC
Q psy11714        256 KILLDRGATLPM  267 (272)
Q Consensus       256 ~~Ll~~ga~~~~  267 (272)
                      ++|+++||++|.
T Consensus       318 ~~Ll~~GA~~d~  329 (337)
T 4g8k_A          318 KVLLSHGAKEDF  329 (337)
T ss_dssp             HHHHHTTCCC--
T ss_pred             HHHHHCcCCCCC
Confidence            777777777665

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.3e-36  Score=257.25  Aligned_cols=210  Identities=17%  Similarity=0.154  Sum_probs=151.7

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~  108 (272)
                      .++|+.|+..|+.+.++.++...     +.+++.+|..|.||||+|+..|+.+++++|+++|++++       ||||+|+
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPL-----NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTT-----TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhc-----CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            34466666666666666655543     25555555566666666666666666666666665552       4666666


Q ss_pred             HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------ccccc----------------------
Q psy11714        109 KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNIN----------------------  159 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~----------------------  159 (272)
                      ..|+.+++++|+++|++++      ..+..|.||||+|+..+....       +.+++                      
T Consensus       100 ~~g~~~iv~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~  173 (351)
T 3utm_A          100 SYGHYEVTELLLKHGACVN------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL  173 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Confidence            6666666666666655555      445555566666555433211       22222                      


Q ss_pred             --------------------------------CCCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCc-------hhHHHH
Q psy11714        160 --------------------------------CVDPLNRSSLIAAIEN---ENIELINILLEYNIQV-------KDALLH  197 (272)
Q Consensus       160 --------------------------------~~d~~~~t~L~~a~~~---g~~~~~~~Ll~~g~~~-------~t~l~~  197 (272)
                                                      ..+..|.||||+|+..   +..+++++|++.|+++       .||||+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  253 (351)
T 3utm_A          174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV  253 (351)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             HhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHH
Confidence                                            2456788999999998   5689999999999988       499999


Q ss_pred             HHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        198 AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       198 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      |+..|+.+++++|+++|++++               .+|..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus       254 A~~~g~~~~v~~Ll~~ga~~n---------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~  312 (351)
T 3utm_A          254 AAERAHNDVMEVLHKHGAKMN---------------ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ  312 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCHHHHHHHHHCCCCCC---------------CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC
Confidence            999999999999999999999               78899999999999999999999999999999998864

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.7e-37  Score=264.90  Aligned_cols=215  Identities=15%  Similarity=0.139  Sum_probs=191.8

Q ss_pred             ccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-----hhHHH
Q psy11714         31 ALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-----KDALL  105 (272)
Q Consensus        31 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~t~l~  105 (272)
                      ....+.++||+|+..|+.+++++|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|+++     .||||
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~   89 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETG------VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIH   89 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHH
Confidence            3455678899999999999999999997      999999999999999999999999999999999877     47999


Q ss_pred             HHHHcCcHHHHHHHHcc----ccccccC----C-------CCccccCCcccHHHHHHhcC--CCCc-------cccccCC
Q psy11714        106 HAIKEEYVEAVEILLEW----EEKIHVH----G-------QPYVSENKGRTIFMMLDELK--DQPE-------VFNINCV  161 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~----g~~~~~~----~-------~~~~~~~~~~t~l~~~~~~~--~~~~-------~~~~~~~  161 (272)
                      +|+..++.+++++|+++    |++++..    .       .....+..|.||||+|+..+  ....       +++++.+
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~  169 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK  169 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence            99999999999999998    6555510    0       00126678999999999987  3322       6899999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----c-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhh
Q psy11714        162 DPLNRSSLIAAIENENIELINILLEYNIQ-----V-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV  229 (272)
Q Consensus       162 d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~-----~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  229 (272)
                      |..|.||||+|+..|+.+++++|+++|++     +       .||||+|+..|+.+++++|+++|++++           
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~-----------  238 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-----------  238 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT-----------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----------
Confidence            99999999999999999999999999988     5       599999999999999999999999999           


Q ss_pred             hcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       230 ~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                          .+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       239 ----~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          239 ----MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             ----CCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred             ----CCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence                788999999999999999999999999998753

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.8e-37  Score=254.65  Aligned_cols=212  Identities=19%  Similarity=0.219  Sum_probs=184.7

Q ss_pred             hhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------
Q psy11714         29 EVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------  101 (272)
Q Consensus        29 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------  101 (272)
                      ......+.++|++|+..|+.++++.|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++       
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~  126 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQG------WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH  126 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTT------CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence            344455678899999999999999999997      9999999999999999999999999999999999884       


Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIE  174 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~  174 (272)
                      ||||+|+..++.+++++|+++|++++       .+..|.||||+|+..+...       .+.+++.+|..|.||||+|+.
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~-------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~  199 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGASVQ-------PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE  199 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSS-------CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            79999999999999999999998876       2445999999999876532       268899999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCc------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHH
Q psy11714        175 NENIELINILLEYNIQV------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAH  248 (272)
Q Consensus       175 ~g~~~~~~~Ll~~g~~~------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  248 (272)
                      .|+.+++++|+++|+++      .||||+|+..++.+++++|+++|++++               .+|..|.||||+|+ 
T Consensus       200 ~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~---------------~~d~~g~t~l~~A~-  263 (285)
T 3d9h_A          200 NQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQ---------------AKNAEGKRPVELVP-  263 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCGGGGSC-
T ss_pred             cCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------------CcCCCCCCHHHHhc-
Confidence            99999999999999988      599999999999999999999999999               78999999999999 


Q ss_pred             cCCHHHHHHHHHC-CCCCCCCCC
Q psy11714        249 MNNYEILKILLDR-GATLPMPHD  270 (272)
Q Consensus       249 ~~~~~iv~~Ll~~-ga~~~~~~~  270 (272)
                       ++.+++++|+++ |++++.|.+
T Consensus       264 -~~~~~~~~Ll~~~~a~l~~~~P  285 (285)
T 3d9h_A          264 -PESPLAQLFLEREGASLPKPKP  285 (285)
T ss_dssp             -TTSHHHHHHHHHC---------
T ss_pred             -CccHHHHHHHHhhccCCCCCCC
Confidence             456999999999 999888754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-35  Score=245.68  Aligned_cols=211  Identities=19%  Similarity=0.258  Sum_probs=192.5

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCV-DPLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      ++.++|+.|+..|+.+.+++|++.+      .+++.. +..|.||||+|+..|+.+++++|+++|++++       ||||
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   77 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGG------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            4567899999999999999999997      888888 7789999999999999999999999999884       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCC----------CCCCCCH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCV----------DPLNRSS  168 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~----------d~~~~t~  168 (272)
                      +|+..|+.+++++|+++|++++      ..+..|.|||++|+..+....       +.+++..          +..|.||
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~  151 (285)
T 1wdy_A           78 LAAIAGSVKLLKLFLSKGADVN------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  151 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence            9999999999999999999988      678899999999998765422       5666665          7889999


Q ss_pred             HHHHHHcCCHHHHHHHHhC-CCCc-------hhHHHHHHHcCC----HHHHHHHHhcCccCCCCCCcchhhhhhcCCCCC
Q psy11714        169 LIAAIENENIELINILLEY-NIQV-------KDALLHAIKEEY----VEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTF  236 (272)
Q Consensus       169 L~~a~~~g~~~~~~~Ll~~-g~~~-------~t~l~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  236 (272)
                      ||+|+..|+.+++++|++. |+++       .||||+|+..++    .+++++|+++|++++               .++
T Consensus       152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~---------------~~~  216 (285)
T 1wdy_A          152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN---------------VRG  216 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS---------------CCC
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC---------------CcC
Confidence            9999999999999999987 8887       599999999999    999999999999999               788


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC
Q psy11714        237 TPDITPLILAAHMNNYEILKILLD-RGATLPMPHDV  271 (272)
Q Consensus       237 ~~g~t~l~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~  271 (272)
                      ..|.||||+|+..++.+++++|++ +|++++..+..
T Consensus       217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~  252 (285)
T 1wdy_A          217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  252 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCC
Confidence            899999999999999999999999 89999998754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.4e-36  Score=245.51  Aligned_cols=205  Identities=19%  Similarity=0.180  Sum_probs=186.3

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHA  107 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A  107 (272)
                      ...+|+.|+..|+.+.+++++..+     ...++..+..|.||||+|+..|+.+++++|+++|++++       ||||+|
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHC-----GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhc-----hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH
Confidence            345699999999999999999987     36678889999999999999999999999999999884       799999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      +..++.+++++|+++|++++      ..+..|.||||+|+..+...       .+.+++.++..|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  154 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHVN------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM  154 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHcCHHHHHHHHHHcCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            99999999999999999988      67788999999999876532       267888999999999999999999999


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      +++|+++|+++       .||||+|+..++.+++++|+++|++++               .++..|.|||++|+..++.+
T Consensus       155 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~t~l~~A~~~~~~~  219 (231)
T 3aji_A          155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY---------------IENKEEKTPLQVAKGGLGLI  219 (231)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC---------------CCCTTSCCHHHHSCHHHHHH
T ss_pred             HHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC---------------CCCCCCCCHHHHHHhhHHHH
Confidence            99999999888       599999999999999999999999998               78889999999999999999


Q ss_pred             HHHHHHHCCCCC
Q psy11714        254 ILKILLDRGATL  265 (272)
Q Consensus       254 iv~~Ll~~ga~~  265 (272)
                      ++++|+++|+++
T Consensus       220 i~~lL~~~~a~i  231 (231)
T 3aji_A          220 LKRLAEGEEASM  231 (231)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHccccccC
Confidence            999999999874

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.8e-36  Score=246.69  Aligned_cols=209  Identities=18%  Similarity=0.177  Sum_probs=158.8

Q ss_pred             cChhhhHHHHHHHcC-------------CHHHHHHHHHccCCCCCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy11714         32 LTPQEKRFLLVAERG-------------DCATVRKMLDELKDQPEVFNINC-VDPLNRSSLIAAIENENIELINILLEYN   97 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g-------------~~~~~~~ll~~~~~~~~~~~~n~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   97 (272)
                      ...+.++||.|+..|             +.++++.|++.|      .+++. .|..|.||||+|+..|+.+++++|+++|
T Consensus         7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   80 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG------ASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS   80 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            345678899999977             899999999998      66654 5889999999999999999999999999


Q ss_pred             CChh-------hHHHHHHHcCcHHHHHHHHcccc-ccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCCC
Q psy11714         98 IQVK-------DALLHAIKEEYVEAVEILLEWEE-KIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCVD  162 (272)
Q Consensus        98 ~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~d  162 (272)
                      ++++       ||||+|+..++.+++++|+++|+ +++      ..+..|.||||+|+..+....       +.+++.+|
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d  154 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD------ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD  154 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTT------CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc------ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC
Confidence            9984       89999999999999999999887 666      677899999999998866433       68899999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCC
Q psy11714        163 PLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSST  235 (272)
Q Consensus       163 ~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  235 (272)
                      ..|.||||+|+..|+.+++++|+++|+++       .||||+|+..++.+++++|+++|++++               .+
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---------------~~  219 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD---------------IT  219 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------CC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc---------------cc
Confidence            99999999999999999999999999998       599999999999999999999999999               78


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy11714        236 FTPDITPLILAAHMNNYEILKILLDRGATLPM  267 (272)
Q Consensus       236 ~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~  267 (272)
                      |..|.||+++|+.+|+.+++++|.+..-.+..
T Consensus       220 d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~~~  251 (253)
T 1yyh_A          220 DHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH  251 (253)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHC-------
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhhhccc
Confidence            89999999999999999999999987655443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=261.97  Aligned_cols=208  Identities=18%  Similarity=0.223  Sum_probs=125.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIK  109 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~  109 (272)
                      ++|+.|+..|+.+++++|++.+      ++++..+..|.||||+|+..|+.+++++|+++|++++       ||||+|+.
T Consensus       148 t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  221 (437)
T 1n11_A          148 TPLHVAAKYGKVRVAELLLERD------AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK  221 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT------CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence            3444444444444444444443      4444444444444444444444444444444444431       34555555


Q ss_pred             cCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC-------CccccccCCCCCCCCHHHHHHHcCCHHHHH
Q psy11714        110 EEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ-------PEVFNINCVDPLNRSSLIAAIENENIELIN  182 (272)
Q Consensus       110 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-------~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~  182 (272)
                      .++.+++++|+++|++++      ..+..|.||||+|+..+..       ..+.+++..+..|.||||+|+..|+.++++
T Consensus       222 ~~~~~~~~~Ll~~g~~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  295 (437)
T 1n11_A          222 QNQVEVARSLLQYGGSAN------AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD  295 (437)
T ss_dssp             TTCHHHHHHHHHTTCCTT------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC------CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            555555555555444444      3445555666665554332       124555556666666666666666666666


Q ss_pred             HHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHH
Q psy11714        183 ILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEIL  255 (272)
Q Consensus       183 ~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv  255 (272)
                      +|+++|+++       .||||+|+..|+.+++++|+++|++++               .++..|.||||+|+..|+.++|
T Consensus       296 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n---------------~~~~~g~t~L~~A~~~g~~~iv  360 (437)
T 1n11_A          296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN---------------AKTKLGYSPLHQAAQQGHTDIV  360 (437)
T ss_dssp             HHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC---------------CCCCCCCCHHHHHHHCChHHHH
Confidence            666666555       366666666666666666666666666               7788999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCC
Q psy11714        256 KILLDRGATLPMPHDV  271 (272)
Q Consensus       256 ~~Ll~~ga~~~~~~~~  271 (272)
                      ++|+++||+++..+..
T Consensus       361 ~~Ll~~ga~~~~~~~~  376 (437)
T 1n11_A          361 TLLLKNGASPNEVSSD  376 (437)
T ss_dssp             HHHHHTTCCSCCCCSS
T ss_pred             HHHHHCcCCCCCCCCC
Confidence            9999999999988754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=246.46  Aligned_cols=217  Identities=14%  Similarity=0.045  Sum_probs=167.1

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCC-----CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh------
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQP-----EVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK------  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~-----~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------  101 (272)
                      ....+.||+|+..|+.+.+..++..++...     ....++.+|..|.||||+|+..|+.+++++|+++|++++      
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g   92 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH   92 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            456778999999999988888776643210     013467788999999999999999999999999999884      


Q ss_pred             -hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCCCCCCCCHHHHHH
Q psy11714        102 -DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCVDPLNRSSLIAAI  173 (272)
Q Consensus       102 -t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~d~~~~t~L~~a~  173 (272)
                       ||||+|+..|+.+++++|+++|++++      .++..|.||||+|+..+....       +.+++.. ..|.||||+|+
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~  165 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHGAQVN------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAA  165 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSS------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHH
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHH
Confidence             89999999999999999999999988      678899999999998765322       4566544 45999999999


Q ss_pred             HcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHH
Q psy11714        174 ENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILA  246 (272)
Q Consensus       174 ~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  246 (272)
                      ..|+.+++++|+++|+++       .||||+|+..++.+++++|+++|++++               . +..|.||||+|
T Consensus       166 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~-~~~g~t~L~~A  229 (285)
T 3d9h_A          166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---------------Q-GKGQDSPLHAV  229 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---------------C-CBTTBCHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC---------------C-CCCCCCHHHHH
Confidence            999999999999999988       499999999999999999999999987               3 67899999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        247 AHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       247 ~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      +..++.+++++|+++|++++.+|..+
T Consensus       230 ~~~~~~~~v~~Ll~~gad~~~~d~~g  255 (285)
T 3d9h_A          230 VRTASEELACLLMDFGADTQAKNAEG  255 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            99999999999999999999988653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.6e-35  Score=236.52  Aligned_cols=191  Identities=15%  Similarity=0.217  Sum_probs=133.5

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHc---cCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDE---LKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------  101 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~---~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------  101 (272)
                      ...+.++||+|+..|+.+++++|++.   .     +.+++.+|..|.||||+|+..|+.+++++|+++|++++       
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQG-----GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHT-----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            35567889999999999999999972   2     38999999999999999999999999999999999984       


Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      ||||+|+..++.+++++|+++++...                            .+++..+..|.||||+|+..|+.+++
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~  132 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGT----------------------------LDLEARNYDGLTALHVAVNTECQETV  132 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTS----------------------------CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcc----------------------------ccccccCcCCCcHHHHHHHcCCHHHH
Confidence            79999999999999999999876321                            23344445555555555555555555


Q ss_pred             HHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        182 NILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       182 ~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      ++|+++|+++        .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..++.+
T Consensus       133 ~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------~~~~~g~t~L~~A~~~~~~~  197 (241)
T 1k1a_A          133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN---------------AQMYSGSSALHSASGRGLLP  197 (241)
T ss_dssp             HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CBCTTSCBHHHHHHHHTCHH
T ss_pred             HHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---------------CcCCCCCCHHHHHHHcCCHH
Confidence            5555555444        255555555555555555555555555               44445555555555555555


Q ss_pred             HHHHHHHCCCCCCCCCC
Q psy11714        254 ILKILLDRGATLPMPHD  270 (272)
Q Consensus       254 iv~~Ll~~ga~~~~~~~  270 (272)
                      ++++|+++|++++.+|.
T Consensus       198 ~v~~Ll~~ga~~~~~~~  214 (241)
T 1k1a_A          198 LVRTLVRSGADSSLKNC  214 (241)
T ss_dssp             HHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHhcCCCCCCcCC
Confidence            55555555555555443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.8e-35  Score=258.12  Aligned_cols=227  Identities=19%  Similarity=0.211  Sum_probs=184.1

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      ..+.++|+.|+..|+.+++++|++.|      +++|..+..|.||||+|+..|+.+++++|+++|++++       ||||
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g------~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRG------ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTT------CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            34567799999999999999999987      8889999999999999999999999999999998873       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCCCCCCCCHHHHHHHcCCH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCVDPLNRSSLIAAIENENI  178 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~d~~~~t~L~~a~~~g~~  178 (272)
                      +|+..|+.+++++|+++|++++      ..+..|.||||+|+..+....       +.+.+..+..|.||||+|+..|+.
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~  159 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNANPN------LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV  159 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTT------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHhCCCCCC------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence            9999999999999999998887      667788888888887765422       456677778888888888888888


Q ss_pred             HHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCC----CCcchhhhhh--------------cCC
Q psy11714        179 ELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVH----GQPYSWEAVD--------------RSS  233 (272)
Q Consensus       179 ~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~----~~~~~~~~~~--------------~~~  233 (272)
                      +++++|+++|+++       .||||+|+..++.+++++|+++|++++..    .+++++++..              ..+
T Consensus       160 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  239 (437)
T 1n11_A          160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN  239 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            8888888888776       47888888888888888888888877642    3455554421              124


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        234 STFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       234 ~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus       240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  277 (437)
T 1n11_A          240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS  277 (437)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCC
Confidence            56778899999999999999999999999999887754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-34  Score=234.74  Aligned_cols=175  Identities=21%  Similarity=0.248  Sum_probs=121.6

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l  104 (272)
                      ...+.++|+.|+..|+.+++++|++.|      ++++..+..|.||||+|+..|+.+++++|+++|++++       |||
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAG------ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcC------CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            345678899999999999999999997      9999999999999999999999999999999998873       799


Q ss_pred             HHHHHcCcHHHHHHHHccc-cccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcC
Q psy11714        105 LHAIKEEYVEAVEILLEWE-EKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENE  176 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g  176 (272)
                      |+|+..++.+++++|+++| ++++      ..+..|.|||++|+..+...       .+.+++.++..|.||||+|+..|
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVN------CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcc------cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence            9999999999999999987 4544      33444445555544433211       13444444444555555555555


Q ss_pred             CHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCC
Q psy11714        177 NIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIH  218 (272)
Q Consensus       177 ~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~  218 (272)
                      +.+++++|+++|+++       .||||+|+..++.+++++|+++|++++
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC
Confidence            555555555544444       245555555555555555555554444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-34  Score=247.46  Aligned_cols=185  Identities=19%  Similarity=0.217  Sum_probs=156.0

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCC---------------------------CCCCCcccCCCCCCcHHHHHHHcCCH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQ---------------------------PEVFNINCVDPLNRSSLIAAIENENI   87 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~---------------------------~~~~~~n~~~~~g~t~L~~A~~~~~~   87 (272)
                      +.++||+|+..|+.++++.||+.|-.-                           ..+.+++..|..|.||||+|+..|+.
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence            457899999999999999999986110                           00134667788899999999999999


Q ss_pred             HHHHHHHHCCCChh-----------------hHHHHHHHcCcHHHHHHHHc-cccccccCC-------------------
Q psy11714         88 ELINILLEYNIQVK-----------------DALLHAIKEEYVEAVEILLE-WEEKIHVHG-------------------  130 (272)
Q Consensus        88 ~~v~~Ll~~g~~~~-----------------t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~-------------------  130 (272)
                      +++++|+++|++++                 ||||+|+..|+.+++++|++ .|++++...                   
T Consensus       139 ~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~  218 (337)
T 4g8k_A          139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  218 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred             HHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence            99999999998873                 79999999999999999995 588887421                   


Q ss_pred             -----------C-CccccCCcccHHHHHHhcCCCC--------ccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy11714        131 -----------Q-PYVSENKGRTIFMMLDELKDQP--------EVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQ  190 (272)
Q Consensus       131 -----------~-~~~~~~~~~t~l~~~~~~~~~~--------~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~  190 (272)
                                 . ...++..|.||||+++..+...        .+.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  298 (337)
T 4g8k_A          219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  298 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence                       1 1234567899999999876532        2678999999999999999999999999999999999


Q ss_pred             c--hhHHHHHHHcCCHHHHHHHHhcCccCCC
Q psy11714        191 V--KDALLHAIKEEYVEAVEILLEWEEKIHV  219 (272)
Q Consensus       191 ~--~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  219 (272)
                      +  .+||++|+..++.+++++|+++||++|.
T Consensus       299 ~n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          299 TDCGDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             STTCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            8  5899999999999999999999999984

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-35  Score=248.12  Aligned_cols=198  Identities=17%  Similarity=0.169  Sum_probs=158.0

Q ss_pred             cCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-----hHHHHHHHcCcHHHHHHH
Q psy11714         45 RGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-----DALLHAIKEEYVEAVEIL  119 (272)
Q Consensus        45 ~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----t~l~~A~~~~~~~~~~~L  119 (272)
                      ..+.+.+..+|..+       ++|.+|..|.||||+|+..|+.+++++|+++|++++     ||||+|+..|+.+++++|
T Consensus         9 ~~~~~~v~~lL~~~-------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            9 TWKSKQLKSFLSSK-------DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GCCHHHHHHHHHST-------TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH
T ss_pred             hcCHHHHHHHHHhC-------CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            44555555666553       356667777777777777777777777777776663     577777777777777777


Q ss_pred             HccccccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCCCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCc
Q psy11714        120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCVDPLN-RSSLIAAIENENIELINILLEYNIQV  191 (272)
Q Consensus       120 l~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~d~~~-~t~L~~a~~~g~~~~~~~Ll~~g~~~  191 (272)
                      +++|++++      .++..|.||||+|+..+....       +++++.++..| .||||+|+..|+.+++++|+++|++.
T Consensus        82 l~~ga~~~------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           82 LFSGLDDS------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             HHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             HHCCCCCC------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            77777766      456667777777776654321       57778888889 89999999999999999999999877


Q ss_pred             ------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCC
Q psy11714        192 ------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITP-LILAAHMNNYEILKILLDRGAT  264 (272)
Q Consensus       192 ------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~-l~~A~~~~~~~iv~~Ll~~ga~  264 (272)
                            .||||+|+..|+.+++++|+++|++++               .++..|.|| ||+|+..++.+++++|+++||+
T Consensus       156 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n---------------~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad  220 (285)
T 3kea_A          156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN---------------TNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN  220 (285)
T ss_dssp             CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC---------------TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred             ccccCCccHHHHHHHcChHHHHHHHHHcCCCCC---------------cccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence                  599999999999999999999999999               788899998 9999999999999999999999


Q ss_pred             CCCCCC
Q psy11714        265 LPMPHD  270 (272)
Q Consensus       265 ~~~~~~  270 (272)
                      ++.++.
T Consensus       221 ~~~~~~  226 (285)
T 3kea_A          221 IYSANL  226 (285)
T ss_dssp             STTTTG
T ss_pred             CCCCCh
Confidence            998863

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.4e-35  Score=236.39  Aligned_cols=209  Identities=16%  Similarity=0.204  Sum_probs=187.0

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------hHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK--------DAL  104 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~l  104 (272)
                      ....++|+.|+..|+.+.+++|++.|      ++++.++..|.||||+|+..|+.+++++|+++|.+++        |||
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELVEAG------YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             cccchHHHHHHHcCChHHHHHHHHcC------CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            34456699999999999999999997      9999999999999999999999999999999998773        799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcCC
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENEN  177 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g~  177 (272)
                      |+|+..++.+++++|+++|++++      ..+..|.|||++|+..+...       .+.+++..+..|.||||+|+..+.
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADPS------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCc------ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence            99999999999999999999988      67889999999999876532       267899999999999999997766


Q ss_pred             -HHHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHH
Q psy11714        178 -IELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAH  248 (272)
Q Consensus       178 -~~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  248 (272)
                       .+++++|++.|+++        .||||+|+..++.+++++|+++|++++               .++..|.|||++|+.
T Consensus       155 ~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------~~~~~g~t~l~~A~~  219 (240)
T 3eu9_A          155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD---------------AQNIKGESALDLAKQ  219 (240)
T ss_dssp             SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT---------------CBCTTSCBHHHHHHH
T ss_pred             hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---------------CcCCCCCCHHHHHHH
Confidence             89999999999888        389999999999999999999999998               788999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC
Q psy11714        249 MNNYEILKILLDRGATLPMP  268 (272)
Q Consensus       249 ~~~~~iv~~Ll~~ga~~~~~  268 (272)
                      .++.+++++|+++|++....
T Consensus       220 ~~~~~~v~~L~~~~~~~~~~  239 (240)
T 3eu9_A          220 RKNVWMINHLQEARQAKGYD  239 (240)
T ss_dssp             TTCHHHHHHHHHHC------
T ss_pred             cCcHHHHHHHHHhhhccCcC
Confidence            99999999999999987543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.1e-35  Score=252.73  Aligned_cols=206  Identities=16%  Similarity=0.182  Sum_probs=182.6

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHH--------HccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh---
Q psy11714         33 TPQEKRFLLVAERGDCATVRKML--------DELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK---  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll--------~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---  101 (272)
                      ..+.++||+|+..|+.++++.|+        +.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++   
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g------a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~  196 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG------ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN  196 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC------CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence            34678899999999998887776        565      9999999999999999999999999999999999884   


Q ss_pred             ----hHHHHHHHcCcHHHHHHHHccc---cccccCCCCccccCCcccHHHHHHhcCCCC----------ccccccC----
Q psy11714        102 ----DALLHAIKEEYVEAVEILLEWE---EKIHVHGQPYVSENKGRTIFMMLDELKDQP----------EVFNINC----  160 (272)
Q Consensus       102 ----t~l~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~----------~~~~~~~----  160 (272)
                          ||||+|+..|+.+++++|++++   ++++      ..+..|.||||+|+..+...          .+.+++.    
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  270 (373)
T 2fo1_E          197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIE------ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  270 (373)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS------CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCccccChh------hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc
Confidence                7999999999999999999998   6777      67889999999999875311          1455554    


Q ss_pred             ----CCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhh
Q psy11714        161 ----VDPLNRSSLIAAIENENIELINILLEYN-IQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA  228 (272)
Q Consensus       161 ----~d~~~~t~L~~a~~~g~~~~~~~Ll~~g-~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  228 (272)
                          .|..|.||||+|+..|+.+++++|+++| +++       .||||+|+..|+.+++++|+++|++++          
T Consensus       271 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~----------  340 (373)
T 2fo1_E          271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----------  340 (373)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----------
T ss_pred             ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------
Confidence                6779999999999999999999999875 777       599999999999999999999999999          


Q ss_pred             hhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy11714        229 VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL  265 (272)
Q Consensus       229 ~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~  265 (272)
                           .+|..|.||||+|+.+|+.+++++|+++|++.
T Consensus       341 -----~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          341 -----AVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             -----CCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             -----CCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence                 78899999999999999999999999999863

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.5e-34  Score=228.87  Aligned_cols=186  Identities=17%  Similarity=0.136  Sum_probs=161.9

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCh--------hhHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYN--IQV--------KDALL  105 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~--------~t~l~  105 (272)
                      .++|+.|+..|+.+.++.|++.+     ....+..|..|.||||+|+..|+.+++++|+++|  .++        .||||
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~   77 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSK-----PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH   77 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHC-----GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcC-----ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHH
Confidence            45799999999999999999998     2444558899999999999999999999999999  444        37999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL  185 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll  185 (272)
                      +|+..++.+++++|+++|+.                              .+++..+..|.||||+|+..|+.+++++|+
T Consensus        78 ~A~~~~~~~~~~~Ll~~g~~------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  127 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDRPLK------------------------------PDLNKITNQGVTCLHLAVGKKWFEVSQFLI  127 (228)
T ss_dssp             HHHHHCCHHHHHHHHSSSSC------------------------------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCC------------------------------cccccCCcCCCCHHHHHHHcCCHhHHHHHH
Confidence            99999999999999998733                              235567788899999999999999999999


Q ss_pred             hCCCCc-------hhHHHHHHHcCCHHHHHHHHhcC-ccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy11714        186 EYNIQV-------KDALLHAIKEEYVEAVEILLEWE-EKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKI  257 (272)
Q Consensus       186 ~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~  257 (272)
                      ++|+++       .||||+|+..++.+++++|+++| ++++               .++..|.||||+|+..++.+++++
T Consensus       128 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---------------~~d~~g~t~L~~A~~~~~~~~v~~  192 (228)
T 2dzn_A          128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN---------------WQDKQGWTPLFHALAEGHGDAAVL  192 (228)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC---------------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc---------------CcCCCCCCHHHHHHHcCCHHHHHH
Confidence            998887       48999999999999999999988 8887               678889999999999999999999


Q ss_pred             HH-HCCCCCCCCCCC
Q psy11714        258 LL-DRGATLPMPHDV  271 (272)
Q Consensus       258 Ll-~~ga~~~~~~~~  271 (272)
                      |+ ++|++++.+|..
T Consensus       193 Ll~~~ga~~~~~~~~  207 (228)
T 2dzn_A          193 LVEKYGAEYDLVDNK  207 (228)
T ss_dssp             HHHHHCCCSCCBCTT
T ss_pred             HHHhcCCCCCccCCC
Confidence            99 889999888754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.4e-35  Score=239.83  Aligned_cols=186  Identities=23%  Similarity=0.219  Sum_probs=139.0

Q ss_pred             CcccCCCCCCcHHHHHHHcC-------------CHHHHHHHHHCCCCh--------hhHHHHHHHcCcHHHHHHHHcccc
Q psy11714         66 NINCVDPLNRSSLIAAIENE-------------NIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEE  124 (272)
Q Consensus        66 ~~n~~~~~g~t~L~~A~~~~-------------~~~~v~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~  124 (272)
                      ++|.+|..|.||||+|+..|             +.+++++|+++|+++        .||||+|+..|+.+++++|+++|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            67889999999999999977             899999999999887        379999999999999999999999


Q ss_pred             ccccCCCCccccCCcccHHHHHHhcCCCCc-------c-ccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-----
Q psy11714        125 KIHVHGQPYVSENKGRTIFMMLDELKDQPE-------V-FNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-----  191 (272)
Q Consensus       125 ~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~-~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-----  191 (272)
                      +++      .++..|.||||+|+..+....       + .+++..+..|.||||+|+..|+.+++++|+++|+++     
T Consensus        82 ~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~  155 (253)
T 1yyh_A           82 DAN------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD  155 (253)
T ss_dssp             CTT------CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT
T ss_pred             CCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCC
Confidence            998      678899999999998765322       3 378899999999999999999999999999999988     


Q ss_pred             --hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy11714        192 --KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPH  269 (272)
Q Consensus       192 --~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~  269 (272)
                        .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       156 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d  220 (253)
T 1yyh_A          156 LGKSALHWAAAVNNVDAAVVLLKNGANKD---------------MQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  220 (253)
T ss_dssp             TSCBHHHHHHHHTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence              599999999999999999999999999               788899999999999999999999999999999988


Q ss_pred             CCC
Q psy11714        270 DVR  272 (272)
Q Consensus       270 ~~~  272 (272)
                      .++
T Consensus       221 ~~g  223 (253)
T 1yyh_A          221 HMD  223 (253)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.3e-33  Score=226.92  Aligned_cols=183  Identities=21%  Similarity=0.250  Sum_probs=167.4

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-Ch-------hhHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI-QV-------KDAL  104 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~-------~t~l  104 (272)
                      ....++|++|+..|+.+++++|++.|      ++++.++..|.||||+|+..|+.+++++|+++|. ++       .|||
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L   96 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLEAS------ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL   96 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHH
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHH
Confidence            45677899999999999999999997      8999999999999999999999999999999886 44       3799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL  184 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~L  184 (272)
                      |+|+..++.+++++|+++|+++                                +.+|..|.||||+|+..|+.+++++|
T Consensus        97 ~~A~~~~~~~~~~~Ll~~g~~~--------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~L  144 (223)
T 2f8y_A           97 ILAARLAVEGMLEDLINSHADV--------------------------------NAVDDLGKSALHWAAAVNNVDAAVVL  144 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT--------------------------------TCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHcCCCC--------------------------------cCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999987554                                46788899999999999999999999


Q ss_pred             HhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy11714        185 LEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKI  257 (272)
Q Consensus       185 l~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~  257 (272)
                      +++|+++       .||||+|+..++.+++++|+++|++++               .++..|.|||++|+..++.+++++
T Consensus       145 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~t~l~~A~~~~~~~i~~~  209 (223)
T 2f8y_A          145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD---------------ITDHMDRLPRDIAQERMHHDIVRL  209 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------CCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc---------------cccccCCCHHHHHHHhcchHHHHH
Confidence            9999988       599999999999999999999999998               788899999999999999999999


Q ss_pred             HHHCCCCCCCC
Q psy11714        258 LLDRGATLPMP  268 (272)
Q Consensus       258 Ll~~ga~~~~~  268 (272)
                      |+++|+....+
T Consensus       210 L~~~g~~~~~~  220 (223)
T 2f8y_A          210 LDEYNLVRSPQ  220 (223)
T ss_dssp             HHHTTCSSCC-
T ss_pred             HHHcCCCcccc
Confidence            99999976543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-33  Score=236.75  Aligned_cols=200  Identities=19%  Similarity=0.184  Sum_probs=155.5

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      ...++|+.|+..|+.+.+++|++.|      +++|..|..|.||||+|+..|+.+++++|+++|++++       ||||+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  112 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERG------ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA  112 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHC------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcC------CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            4567899999999999999999997      9999999999999999999999999999999999984       79999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc--------c-----------------------
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE--------V-----------------------  155 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~--------~-----------------------  155 (272)
                      |+..|+.+++++|+++|++++      ..+..|.|||++|+..+....        +                       
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVG------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN  186 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCC------CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHh
Confidence            999999999999999998887      566777788877654321100        0                       


Q ss_pred             ---ccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcch
Q psy11714        156 ---FNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYS  225 (272)
Q Consensus       156 ---~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~  225 (272)
                         ......+..|.||||+|+..|+.+++++|+++|+++       .||||+|+..|+.+++++|+++|++++       
T Consensus       187 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-------  259 (299)
T 1s70_B          187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-------  259 (299)
T ss_dssp             HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-------
T ss_pred             ccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC-------
Confidence               112234556777777777777777777777777776       377777777777777777777777777       


Q ss_pred             hhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       226 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                              .+|..|.||||+|+... .++++.|++.
T Consensus       260 --------~~d~~g~t~l~~A~~~~-~~~l~~l~~~  286 (299)
T 1s70_B          260 --------AVNKVGQTAFDVADEDI-LGYLEELQKK  286 (299)
T ss_dssp             --------CCCTTSCCTTTSCCSGG-GHHHHHHHHH
T ss_pred             --------CcCCCCCCHHHHHHHHH-HHHHHHHHHH
Confidence                    66777777777776543 4444444443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-34  Score=236.54  Aligned_cols=212  Identities=18%  Similarity=0.163  Sum_probs=148.6

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCC--CCCCcccCCCCCCcHHHHHHHcCCH-HHHHHHHHCCCChh-------hH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQP--EVFNINCVDPLNRSSLIAAIENENI-ELINILLEYNIQVK-------DA  103 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~--~~~~~n~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~~-------t~  103 (272)
                      ...++|+.|+..|+.++|++||+.+....  ....++..+..|.|||+.|+..++. .++++|++.|++++       ||
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~Tp   89 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSP   89 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCH
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            34577999999999999999999873110  0123567788899999999987764 58899999999984       79


Q ss_pred             HHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcC
Q psy11714        104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENE  176 (272)
Q Consensus       104 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g  176 (272)
                      ||+|+..|+.+++++|+++|++++      .++..|.||++.++......       .+++++.+|..|.||||+|+..|
T Consensus        90 Lh~A~~~g~~~~v~~Ll~~~a~~~------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           90 LHVAALHGRADLIPLLLKHGANAG------ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCCTT------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCcC------ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            999999999999999999999988      67888999999998876532       26889999999999999999999


Q ss_pred             CHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHc
Q psy11714        177 NIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHM  249 (272)
Q Consensus       177 ~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  249 (272)
                      +.+++++|+++|+++       .||||+|+..|+.+++++|+++|++++               .+|..|.||||+|+++
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~---------------~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ---------------VLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC---------------CCCTTSCCSGGGSCTT
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC---------------CcCCCCCCHHHHHHhC
Confidence            999999999999998       599999999999999999999999998               7889999999999888


Q ss_pred             CC-HHHHHHHHHCCCCCC
Q psy11714        250 NN-YEILKILLDRGATLP  266 (272)
Q Consensus       250 ~~-~~iv~~Ll~~ga~~~  266 (272)
                      ++ .+++++|.+.++.++
T Consensus       229 ~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          229 SKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             CHHHHHTTC---------
T ss_pred             CcHHHHHHHHHHhchhhh
Confidence            75 456666666666554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.7e-33  Score=237.67  Aligned_cols=209  Identities=16%  Similarity=0.133  Sum_probs=183.3

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      ..+.++||+|+..|+.+++++|++.|      ++++.+|..|.||||+|+..|+.+++++|+++|++++       ||||
T Consensus        56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~  129 (351)
T 3utm_A           56 GRKSTPLHLAAGYNRVRIVQLLLQHG------ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH  129 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            44578899999999999999999997      9999999999999999999999999999999999984       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCC------------------------------------------------CCccccC
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHG------------------------------------------------QPYVSEN  137 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~------------------------------------------------~~~~~~~  137 (272)
                      +|+..++.+++++|+++|++++...                                                ..+..+.
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  209 (351)
T 3utm_A          130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ  209 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC
Confidence            9999999999999999999877422                                                1123446


Q ss_pred             CcccHHHHHHhcCCC----------CccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHH
Q psy11714        138 KGRTIFMMLDELKDQ----------PEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIK  200 (272)
Q Consensus       138 ~~~t~l~~~~~~~~~----------~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~  200 (272)
                      .+.||||+|+.....          ..+.+++.+|..|.||||+|+..|+.+++++|+++|+++       +||||+|+.
T Consensus       210 ~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL  289 (351)
T ss_dssp             TCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            788999999987432          126889999999999999999999999999999999998       599999999


Q ss_pred             cCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        201 EEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       201 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                      .++.+++++|+++|++++               .++..|.||+++|    ..+++++|.+.+....
T Consensus       290 ~~~~~~v~~Ll~~gad~~---------------~~~~~g~tal~~a----~~~~~~~l~~~~~~~~  336 (351)
T 3utm_A          290 AGHLQTCRLLLSYGSDPS---------------IISLQGFTAAQMG----NEAVQQILSESTPMRT  336 (351)
T ss_dssp             HTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHS----CHHHHHHHHHC-----
T ss_pred             cCcHHHHHHHHHcCCCCC---------------CcCCCCCChhhhh----hHHHHHHHHhcccccc
Confidence            999999999999999999               7889999999998    6789999998876543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.4e-33  Score=220.83  Aligned_cols=178  Identities=22%  Similarity=0.281  Sum_probs=164.2

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      ...++|+.|+..|+.+.++.++..+     +.++|..|..|.||||+|+..|+.+++++|+++|++++       ||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDT-----TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY   78 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCT-----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcC-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            4567799999999999999999998     37999999999999999999999999999999999984       79999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE  186 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~  186 (272)
                      |+..++.+++++|++++                               +.+++..+..|.||||+|+..|+.+++++|++
T Consensus        79 A~~~~~~~~~~~Ll~~~-------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  127 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHA-------------------------------TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE  127 (201)
T ss_dssp             HHHTTCHHHHHHHHHHS-------------------------------CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcc-------------------------------CcccccccCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999542                               14566788899999999999999999999999


Q ss_pred             CC-CCc-------hhHHHHHHHcCC-----HHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        187 YN-IQV-------KDALLHAIKEEY-----VEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       187 ~g-~~~-------~t~l~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      +| +++       .||||+|+..++     .+++++|+++|++++               .++..|.||||+|+..|+.+
T Consensus       128 ~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~t~l~~A~~~~~~~  192 (201)
T 3hra_A          128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS---------------IKDNSGRTAMDYANQKGYTE  192 (201)
T ss_dssp             HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHHTCHH
T ss_pred             cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC---------------ccCCCCCCHHHHHHHcCCHh
Confidence            98 776       599999999998     999999999999999               78899999999999999999


Q ss_pred             HHHHHHHCC
Q psy11714        254 ILKILLDRG  262 (272)
Q Consensus       254 iv~~Ll~~g  262 (272)
                      ++++|+++|
T Consensus       193 ~~~~Ll~~G  201 (201)
T 3hra_A          193 ISKILAQYN  201 (201)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHhcC
Confidence            999999987

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.1e-33  Score=214.34  Aligned_cols=157  Identities=27%  Similarity=0.364  Sum_probs=115.7

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      +-.++|+.|++.|+.++|+.||+.|      +++|.+|..|.||||+|+..++.+++++|+++|++++       ||||+
T Consensus         3 dlg~~L~~Aa~~G~~~~v~~Ll~~G------advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~   76 (169)
T 4gpm_A            3 ELGKRLIEAAENGNKDRVKDLIENG------ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH   76 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHH
Confidence            4456799999999999999999997      9999999999999999999999999988888877763       45555


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE  186 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~  186 (272)
                      |+..|+.+++++|+++|+++                                +.+|..|+||||+|              
T Consensus        77 A~~~g~~~~v~~Ll~~gadv--------------------------------n~~d~~G~TpLh~A--------------  110 (169)
T 4gpm_A           77 AAENGHKEVVKLLISKGADV--------------------------------NAKDSDGRTPLHHA--------------  110 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHH--------------
T ss_pred             HHHcCCHHHHHHHHHCcCCC--------------------------------CCCCCCCCCHHHHH--------------
Confidence            55555555555555554332                                24455555555555              


Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        187 YNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       187 ~g~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                                  +..|+.+++++|+++|++++               .+|..|.||||+|+.+|+.+++++|+++||++.
T Consensus       111 ------------~~~g~~~~v~~Ll~~gad~~---------------~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          111 ------------AENGHKEVVKLLISKGADVN---------------TSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             ------------HHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             ------------HHcCCHHHHHHHHHcCCCcc---------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence                        55556666677777777777               678889999999999999999999999999987


Q ss_pred             CCC
Q psy11714        267 MPH  269 (272)
Q Consensus       267 ~~~  269 (272)
                      --+
T Consensus       164 ~~~  166 (169)
T 4gpm_A          164 HHH  166 (169)
T ss_dssp             ---
T ss_pred             CCC
Confidence            543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.9e-34  Score=247.67  Aligned_cols=209  Identities=19%  Similarity=0.190  Sum_probs=182.5

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHH--------HCCCChh--
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVD-PLNRSSLIAAIENENIELINILL--------EYNIQVK--  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~-~~g~t~L~~A~~~~~~~~v~~Ll--------~~g~~~~--  101 (272)
                      ....++||.|+..+. ++++.|+.        .++|.+| ..|.||||+|+..|+.+++++|+        ++|++++  
T Consensus        92 ~~g~t~L~~Aa~~~~-~~~~~L~~--------~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~  162 (373)
T 2fo1_E           92 PESPIKLHTEAAGSY-AITEPITR--------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM  162 (373)
T ss_dssp             --CCCHHHHHHHSSS-CCCSCCST--------TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCccHHHHHhcCCc-hHHHHhcc--------ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence            345677999999654 66665542        5677888 68999999999999988877776        7899884  


Q ss_pred             -----hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------c---ccccCCCCCCC
Q psy11714        102 -----DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------V---FNINCVDPLNR  166 (272)
Q Consensus       102 -----t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~---~~~~~~d~~~~  166 (272)
                           ||||+|+..|+.+++++|+++|++++      .++..|.||||+|+..+....       +   .+++..|..|.
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~  236 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMKAGADPT------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM  236 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHCCCCCc------ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCC
Confidence                 79999999999999999999999998      678899999999998765322       3   68899999999


Q ss_pred             CHHHHHHHcC---CHHHHHHHHhCCCCc---------------hhHHHHHHHcCCHHHHHHHHhcC-ccCCCCCCcchhh
Q psy11714        167 SSLIAAIENE---NIELINILLEYNIQV---------------KDALLHAIKEEYVEAVEILLEWE-EKIHVHGQPYSWE  227 (272)
Q Consensus       167 t~L~~a~~~g---~~~~~~~Ll~~g~~~---------------~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~  227 (272)
                      ||||+|+..+   +.+++++|+++|+++               .||||+|+..|+.+++++|+++| ++++         
T Consensus       237 t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n---------  307 (373)
T 2fo1_E          237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD---------  307 (373)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT---------
T ss_pred             CHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc---------
Confidence            9999999998   899999999999876               38999999999999999999886 9998         


Q ss_pred             hhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        228 AVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       228 ~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                            .+|..|.||||+|+..|+.++|++|+++|++++..|..
T Consensus       308 ------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~  345 (373)
T 2fo1_E          308 ------KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT  345 (373)
T ss_dssp             ------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSS
T ss_pred             ------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCC
Confidence                  78899999999999999999999999999999998864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.2e-34  Score=232.62  Aligned_cols=191  Identities=15%  Similarity=0.144  Sum_probs=168.8

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      ..+.++||+|+..|+.++++.|++.+...  +.++|.++..|.||||+|+..|+.+++++|+++|++++       ||||
T Consensus         6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            6 EDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             -CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCchhHHHHHcCChhHHHHHHHHhhcc--HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            34567799999999999999999876211  24789999999999999999999999999999999884       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL  185 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll  185 (272)
                      +|+..++.+++++|+++|++...                          ...++..+..|.||||+|+..|+.+++++|+
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~--------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  137 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHL--------------------------HSILKATNYNGHTCLHLASIHGYLGIVELLV  137 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSS--------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcccchhH--------------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999998875431                          1235677889999999999999999999999


Q ss_pred             hCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy11714        186 EYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKI  257 (272)
Q Consensus       186 ~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~  257 (272)
                      ++|+++        .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..++.+++++
T Consensus       138 ~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~tpl~~A~~~~~~~~~~~  202 (236)
T 1ikn_D          138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN---------------RVTYQGYSPYQLTWGRPSTRIQQQ  202 (236)
T ss_dssp             HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC---------------CCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred             HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------cccCCCCCHHHHHHccCchHHHHH
Confidence            999887        499999999999999999999999999               788999999999999999999999


Q ss_pred             HHHCCCCCC
Q psy11714        258 LLDRGATLP  266 (272)
Q Consensus       258 Ll~~ga~~~  266 (272)
                      |+++||++.
T Consensus       203 Ll~~ga~~~  211 (236)
T 1ikn_D          203 LGQLTLENL  211 (236)
T ss_dssp             HHTTSCGGG
T ss_pred             HHHcchhhh
Confidence            999999765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.9e-33  Score=230.85  Aligned_cols=198  Identities=19%  Similarity=0.168  Sum_probs=164.6

Q ss_pred             hhHHHHHHHcCCHH----HHHHHHHccCCCCCCCCccc----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCh----
Q psy11714         36 EKRFLLVAERGDCA----TVRKMLDELKDQPEVFNINC----VDPLNRSSLIAAIEN---ENIELINILLEYNIQV----  100 (272)
Q Consensus        36 ~~~l~~a~~~g~~~----~~~~ll~~~~~~~~~~~~n~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~----  100 (272)
                      .++|+.|+..|+.+    +++++++.+      +++|.    +|..|.||||+|+..   |+.+++++|+++|+++    
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g------~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   76 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYLRWNS------KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK   76 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHT------CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHcC------CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh
Confidence            46799999999998    456666676      89998    899999999999999   9999999999987643    


Q ss_pred             --------------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCC
Q psy11714        101 --------------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNR  166 (272)
Q Consensus       101 --------------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~  166 (272)
                                    .||||+|+..|+.+++++|+++|++++.      ++..+..+             .+.+..+..|.
T Consensus        77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~~~~-------------~~~~~~~~~g~  137 (256)
T 2etb_A           77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL------RACGRFFQ-------------KHQGTCFYFGE  137 (256)
T ss_dssp             CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCCSGGGS-------------CCSSSCCCSCS
T ss_pred             hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cccccccc-------------ccccccccCCC
Confidence                          3899999999999999999999988872      22222110             22334455699


Q ss_pred             CHHHHHHHcCCHHHHHHHHh---CCCCc-------hhHHHHHHH--cCCHH-------HHHHHHhcCccCCCCCCcchhh
Q psy11714        167 SSLIAAIENENIELINILLE---YNIQV-------KDALLHAIK--EEYVE-------AVEILLEWEEKIHVHGQPYSWE  227 (272)
Q Consensus       167 t~L~~a~~~g~~~~~~~Ll~---~g~~~-------~t~l~~A~~--~~~~~-------~~~~Ll~~g~~~~~~~~~~~~~  227 (272)
                      ||||+|+..|+.+++++|++   +|+++       .||||+|+.  .++.+       ++++|+++|++++...      
T Consensus       138 tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~------  211 (256)
T 2etb_A          138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV------  211 (256)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC------
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc------
Confidence            99999999999999999999   99988       599999999  88888       9999999999993100      


Q ss_pred             hhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        228 AVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       228 ~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                        ...+.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       212 --~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          212 --QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             --CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --ccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence              0011788999999999999999999999999998653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.4e-33  Score=231.52  Aligned_cols=211  Identities=17%  Similarity=0.174  Sum_probs=165.4

Q ss_pred             ccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCC----
Q psy11714         31 ALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNIN----CVDPLNRSSLIAAIEN---ENIELINILLEYNIQ----   99 (272)
Q Consensus        31 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~----   99 (272)
                      ......++|+.|+..|+.+.++.|++.+...  +.+++    ..+..|.||||+|+..   |+.+++++|+++|++    
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRS--KKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHS--CCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhc--ccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            3455678899999999999999998743100  25554    3578999999999987   999999999998753    


Q ss_pred             --------------hhhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCC
Q psy11714        100 --------------VKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN  165 (272)
Q Consensus       100 --------------~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~  165 (272)
                                    -.||||+|+..|+.+++++|+++|++++.      ++..+.            ....+....+..|
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~~------------~~~~~~~~~~~~g  148 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA------AANGDF------------FKKTKGRPGFYFG  148 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CBCSGG------------GSSCSSSCCCCSC
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc------cccccc------------cccccccccccCC
Confidence                          24899999999999999999999998873      222210            0012344556689


Q ss_pred             CCHHHHHHHcCCHHHHHHHHh---CCCCc-------hhHHHHHHHcCC---------HHHHHHHHhcCccCCCCCCcchh
Q psy11714        166 RSSLIAAIENENIELINILLE---YNIQV-------KDALLHAIKEEY---------VEAVEILLEWEEKIHVHGQPYSW  226 (272)
Q Consensus       166 ~t~L~~a~~~g~~~~~~~Ll~---~g~~~-------~t~l~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~~~~  226 (272)
                      .||||+|+..|+.+++++|++   +|+++       +||||+|+..++         .+++++|+++|++++...     
T Consensus       149 ~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~-----  223 (273)
T 2pnn_A          149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL-----  223 (273)
T ss_dssp             BSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc-----
Confidence            999999999999999999999   89988       599999999988         899999999999987210     


Q ss_pred             hhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCC
Q psy11714        227 EAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA-TLPMPH  269 (272)
Q Consensus       227 ~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga-~~~~~~  269 (272)
                         ...+.++..|.||||+|+..|+.+++++|+++|| |+....
T Consensus       224 ---~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~  264 (273)
T 2pnn_A          224 ---KLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRH  264 (273)
T ss_dssp             ---CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------
T ss_pred             ---ccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhh
Confidence               1112478899999999999999999999999999 766554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-33  Score=235.37  Aligned_cols=200  Identities=18%  Similarity=0.226  Sum_probs=175.3

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l  104 (272)
                      ...+.++||+|+..|+.++++.|++.|      +++|..+  |.||||+|+..|+.+++++|+++|++++       |||
T Consensus        28 d~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L   99 (285)
T 3kea_A           28 DVHGHSASYYAIADNNVRLVCTLLNAG------ALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL   99 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTT------GGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCC------CCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH
Confidence            355678899999999999999999997      8888874  8999999999999999999999999984       799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCc-ccHHHHHHhcCCCCc-------cccccCCCC-CCCCHHHHHHHc
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKG-RTIFMMLDELKDQPE-------VFNINCVDP-LNRSSLIAAIEN  175 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~-~t~l~~~~~~~~~~~-------~~~~~~~d~-~~~t~L~~a~~~  175 (272)
                      |+|+..|+.+++++|+++|++++      .++..| .||||+|+..+....       +.+.  .+. .|.||||+|+..
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga~~~------~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~g~t~L~~A~~~  171 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNWRLM------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKN  171 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGGG------GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT--CCCSTHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCC------ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc--ccccCCccHHHHHHHc
Confidence            99999999999999999999998      677777 799999998765322       2333  333 899999999999


Q ss_pred             CCHHHHHHHHhCCCCc-------hhH-HHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHH
Q psy11714        176 ENIELINILLEYNIQV-------KDA-LLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAA  247 (272)
Q Consensus       176 g~~~~~~~Ll~~g~~~-------~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  247 (272)
                      |+.+++++|+++|+++       .|| ||+|+..++.+++++|+++|++++               ..+       +.|+
T Consensus       172 g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~---------------~~~-------~~a~  229 (285)
T 3kea_A          172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY---------------SAN-------LENV  229 (285)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST---------------TTT-------GGGG
T ss_pred             ChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC---------------CCC-------hhhh
Confidence            9999999999999887       376 999999999999999999999998               333       2557


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCC
Q psy11714        248 HMNNYEILKILLDRGATLPMPH  269 (272)
Q Consensus       248 ~~~~~~iv~~Ll~~ga~~~~~~  269 (272)
                      ..|+.+++++|+++|++++...
T Consensus       230 ~~~~~~iv~~Ll~~g~~~~~~~  251 (285)
T 3kea_A          230 LLDDAEIAKMIIEKHVEYKSDS  251 (285)
T ss_dssp             TTTCHHHHHHHHHHHHHHTTCT
T ss_pred             hcCCHHHHHHHHHcCCCCCCcc
Confidence            7899999999999999877543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.6e-32  Score=219.23  Aligned_cols=174  Identities=21%  Similarity=0.214  Sum_probs=157.4

Q ss_pred             CCHHHHHHHHHccCCCCCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHH
Q psy11714         46 GDCATVRKMLDELKDQPEVFNINCV-DPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVE  117 (272)
Q Consensus        46 g~~~~~~~ll~~~~~~~~~~~~n~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~  117 (272)
                      |+.+++++|++.|      .+++.. |..|.||||+|+..|+.+++++|+++|++++       ||||+|+..++.++++
T Consensus         2 g~~~~i~~Ll~~g------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   75 (223)
T 2f8y_A            2 DAPAVISDFIYQG------ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ   75 (223)
T ss_dssp             ---CCEETTEETT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHcC------CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            5677788888887      777665 7899999999999999999999999999884       7999999999999999


Q ss_pred             HHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc------
Q psy11714        118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV------  191 (272)
Q Consensus       118 ~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~------  191 (272)
                      +|+++++                               .+++..+..|.||||+|+..|+.+++++|+++|+++      
T Consensus        76 ~Ll~~~~-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  124 (223)
T 2f8y_A           76 ILIRNRA-------------------------------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL  124 (223)
T ss_dssp             HHHHBTT-------------------------------SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT
T ss_pred             HHHHcCC-------------------------------CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCC
Confidence            9999764                               245677889999999999999999999999999988      


Q ss_pred             -hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q psy11714        192 -KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD  270 (272)
Q Consensus       192 -~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~  270 (272)
                       .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..++.+++++|+++|++++.++.
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  189 (223)
T 2f8y_A          125 GKSALHWAAAVNNVDAAVVLLKNGANKD---------------MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH  189 (223)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCC---------------CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc
Confidence             599999999999999999999999998               7788999999999999999999999999999999876


Q ss_pred             C
Q psy11714        271 V  271 (272)
Q Consensus       271 ~  271 (272)
                      .
T Consensus       190 ~  190 (223)
T 2f8y_A          190 M  190 (223)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-31  Score=216.26  Aligned_cols=180  Identities=19%  Similarity=0.196  Sum_probs=164.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCh--------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHH
Q psy11714         72 PLNRSSLIAAIENENIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIF  143 (272)
Q Consensus        72 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l  143 (272)
                      ..+.+||+.|+..|+.+.++.|++.+...        .||||+|+..|+.+++++|+++|++++      .++..|.|||
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~L   77 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPL   77 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC------CCCTTSCCHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC------CcCCCCCCHH
Confidence            45789999999999999999999876543        489999999999999999999999988      6788999999


Q ss_pred             HHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHH
Q psy11714        144 MMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEI  209 (272)
Q Consensus       144 ~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~  209 (272)
                      |+|+..+...       .+.+++.++..|.||||+|+..|+.+++++|+++|+++       .||||+|+..++.+++++
T Consensus        78 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  157 (231)
T 3aji_A           78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI  157 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            9999876532       26889999999999999999999999999999999987       599999999999999999


Q ss_pred             HHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       210 Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      |+++|++++               .++..|.||||+|+..++.+++++|+++|++++.++.++
T Consensus       158 Ll~~g~~~~---------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  205 (231)
T 3aji_A          158 LLFYKASTN---------------IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE  205 (231)
T ss_dssp             HHHTTCCSC---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             HHhcCCCcc---------------ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            999999998               778899999999999999999999999999999988653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=230.93  Aligned_cols=173  Identities=16%  Similarity=0.138  Sum_probs=129.7

Q ss_pred             hhhhHHHHHHHcCCHH-HHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         34 PQEKRFLLVAERGDCA-TVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~-~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      ...++|+.|+..++.+ .++.|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++       ||++
T Consensus        51 ~~~t~L~~a~~~~~~~~~v~~Ll~~G------advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~  124 (269)
T 4b93_B           51 EFCHPLCQCPKCAPAQKRLAKVPASG------LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLH  124 (269)
T ss_dssp             ------------------------CC------CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHHCC------CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccc
Confidence            3456789999887765 678888887      9999999999999999999999999999999999884       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc-------cccccCCCCCCCCHHHHHHHcCCH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE-------VFNINCVDPLNRSSLIAAIENENI  178 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~-------~~~~~~~d~~~~t~L~~a~~~g~~  178 (272)
                      +|+..++.+++++|+++|++++      .++..|.||||+|+..+....       +++++.++..|.||||+|+..|+.
T Consensus       125 ~a~~~~~~~~~~~Ll~~g~~~n------~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~  198 (269)
T 4b93_B          125 LACQQGHFQVVKCLLDSNAKPN------KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV  198 (269)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSC------CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             cccccChHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCH
Confidence            9999999999999999999998      678999999999999876433       789999999999999999999999


Q ss_pred             HHHHHHHhCCCCc-------hhHHHHHHHcCC-HHHHHHHHhcCccCC
Q psy11714        179 ELINILLEYNIQV-------KDALLHAIKEEY-VEAVEILLEWEEKIH  218 (272)
Q Consensus       179 ~~~~~Ll~~g~~~-------~t~l~~A~~~~~-~~~~~~Ll~~g~~~~  218 (272)
                      +++++|+++|+|+       +||||+|+.+++ .+++++|...++.++
T Consensus       199 ~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            9999999999998       599999998776 455666666665554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.98  E-value=1.5e-32  Score=236.63  Aligned_cols=184  Identities=15%  Similarity=0.113  Sum_probs=161.8

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccC
Q psy11714         65 FNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSEN  137 (272)
Q Consensus        65 ~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  137 (272)
                      .+.+..|..|.||||+|+..|+.++|++|+++|++++       ||||+|+..|+.+++++|+++|++++        ..
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------~~   82 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--------LW   82 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC--------CB
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc--------cc
Confidence            6777888999999999999999999999999999984       79999999999999999999998654        35


Q ss_pred             CcccHHHHHHhcCCCCc-----------cccccC-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHhC
Q psy11714        138 KGRTIFMMLDELKDQPE-----------VFNINC-----------------VDPLNRSSLIAAIENE--NIELINILLEY  187 (272)
Q Consensus       138 ~~~t~l~~~~~~~~~~~-----------~~~~~~-----------------~d~~~~t~L~~a~~~g--~~~~~~~Ll~~  187 (272)
                      .|.||||+|+..+....           +.+++.                 .|..|.||||+|+..|  +.+++++|+++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            79999999998765322           233333                 7889999999999999  99999999999


Q ss_pred             CCCc-------hhHHHHHHHcCCHHHHHHHHhcCcc-----CCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHH
Q psy11714        188 NIQV-------KDALLHAIKEEYVEAVEILLEWEEK-----IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEIL  255 (272)
Q Consensus       188 g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv  255 (272)
                      |+++       .||||+|+..|+.+++++|+++|++     ++               ..+..|.||||+|+..|+.++|
T Consensus       163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~---------------~~~~~g~t~L~~A~~~g~~~~v  227 (364)
T 3ljn_A          163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD---------------YANKQGNSHLHWAILINWEDVA  227 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT---------------CCCTTCCCTTHHHHTTTCHHHH
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc---------------ccCCCCCcHHHHHHHcCCHHHH
Confidence            9998       5999999999999999999999998     76               7788999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCC
Q psy11714        256 KILLDRGATLPMPHDV  271 (272)
Q Consensus       256 ~~Ll~~ga~~~~~~~~  271 (272)
                      ++|+++|++++..|..
T Consensus       228 ~~Ll~~gad~~~~d~~  243 (364)
T 3ljn_A          228 MRFVEMGIDVNMEDNE  243 (364)
T ss_dssp             HHHHTTTCCTTCCCTT
T ss_pred             HHHHHcCCCCCCCCCC
Confidence            9999999999998864

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.98  E-value=4.6e-32  Score=220.09  Aligned_cols=178  Identities=24%  Similarity=0.254  Sum_probs=160.1

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC----Ch-------h
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI----QV-------K  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~-------~  101 (272)
                      ..+.++|++|+..|+.+++++|++.|      ++++.++..|.||||+|+..|+.+++++|+++|.    ++       .
T Consensus        44 ~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  117 (241)
T 1k1a_A           44 NLRQTPLHLAVITTLPSVVRLLVTAG------ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL  117 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSC
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHcC------CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCC
Confidence            44677899999999999999999997      9999999999999999999999999999999987    44       3


Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCC-CCCCCHHHHHHHcCCHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD-PLNRSSLIAAIENENIEL  180 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d-~~~~t~L~~a~~~g~~~~  180 (272)
                      ||||+|+..++.+++++|+++|++++                                ..+ ..|.||||+|+..|+.++
T Consensus       118 t~L~~A~~~~~~~~~~~Ll~~g~~~~--------------------------------~~~~~~g~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A          118 TALHVAVNTECQETVQLLLERGADID--------------------------------AVDIKSGRSPLIHAVENNSLSM  165 (241)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTT--------------------------------CCCTTTCCCHHHHHHHTTCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcc--------------------------------cccccCCCcHHHHHHHcCCHHH
Confidence            79999999999999999999886654                                555 679999999999999999


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      +++|+++|+++       .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..|+.+
T Consensus       166 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~tpl~~A~~~~~~~  230 (241)
T 1k1a_A          166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS---------------LKNCHNDTPLMVARSRRVID  230 (241)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT---------------CCCTTSCCTTTTCSSHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC---------------CcCCCCCCHHHHHHhcCcHH
Confidence            99999999998       599999999999999999999999998               78899999999999999999


Q ss_pred             HHHHHHHCCC
Q psy11714        254 ILKILLDRGA  263 (272)
Q Consensus       254 iv~~Ll~~ga  263 (272)
                      +++.|.++++
T Consensus       231 i~~~l~~~~a  240 (241)
T 1k1a_A          231 ILRGKATRPA  240 (241)
T ss_dssp             HHTC------
T ss_pred             HHhhhccCCC
Confidence            9999999886

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=5.8e-33  Score=228.31  Aligned_cols=202  Identities=16%  Similarity=0.164  Sum_probs=163.2

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHH----ccCCCCCCCCcccCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCCh---
Q psy11714         35 QEKRFLLVAERGDCATVRKMLD----ELKDQPEVFNINCVD----PLNRSSLIAAI---ENENIELINILLEYNIQV---  100 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~----~~~~~~~~~~~n~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~~---  100 (272)
                      ..++|+.|+..|+.+.++.+++    .+      .+++..+    ..|.||||+|+   ..|+.+++++|+++|+++   
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~------~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHK------KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHT------CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence            4567999999999997666665    65      7777665    67999999999   679999999999987531   


Q ss_pred             ---------------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCC
Q psy11714        101 ---------------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN  165 (272)
Q Consensus       101 ---------------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~  165 (272)
                                     .||||+|+..|+.+++++|+++|++++.      .+.++            .....+.+..+..|
T Consensus        79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~------------~~~~~~~~~~~~~g  140 (260)
T 3jxi_A           79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA------QARGR------------FFQPKDEGGYFYFG  140 (260)
T ss_dssp             HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCEEC------------CCSSSCCCCSCCSC
T ss_pred             HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc------ccccc------------ccCcccccccccCC
Confidence                           4899999999999999999999988873      11110            00112233444789


Q ss_pred             CCHHHHHHHcCCHHHHHHHHh---CCCCc-------hhHHHHHHHcCC---------HHHHHHHHhcCccCCCCCCcchh
Q psy11714        166 RSSLIAAIENENIELINILLE---YNIQV-------KDALLHAIKEEY---------VEAVEILLEWEEKIHVHGQPYSW  226 (272)
Q Consensus       166 ~t~L~~a~~~g~~~~~~~Ll~---~g~~~-------~t~l~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~~~~  226 (272)
                      .||||+|+..|+.+++++|++   +|+++       +||||+|+..++         .+++++|+++|++++..      
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~------  214 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD------  214 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc------
Confidence            999999999999999999999   89988       599999998887         79999999999998521      


Q ss_pred             hhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy11714        227 EAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMP  268 (272)
Q Consensus       227 ~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~  268 (272)
                        ....+.++..|.||||+|+..|+.+++++|+++|++...+
T Consensus       215 --~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          215 --TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             --CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred             --cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccc
Confidence              0111267899999999999999999999999999876544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=3.3e-30  Score=208.77  Aligned_cols=168  Identities=16%  Similarity=0.168  Sum_probs=148.3

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCh-------hhHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYN-IQV-------KDAL  104 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~-------~t~l  104 (272)
                      ..+.++|+.|+..|+.+++++|++.|      ++++.++..|.||||+|+..|+.+++++|+++| .++       .|||
T Consensus        42 ~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  115 (237)
T 3b7b_A           42 EDQRTPLMEAAENNHLEAVKYLIKAG------ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM  115 (237)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTT------CCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCC------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHH
Confidence            34567899999999999999999997      899999999999999999999999999999998 566       3799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC-------CccccccCCCCCCCCHHHHHHHcCC
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ-------PEVFNINCVDPLNRSSLIAAIENEN  177 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-------~~~~~~~~~d~~~~t~L~~a~~~g~  177 (272)
                      |+|+..++.+++++|+++|++++      .++..|.||||+|+..+..       ..+.+++.+|..|.||||+|+..|+
T Consensus       116 ~~A~~~~~~~~~~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  189 (237)
T 3b7b_A          116 IWATEYKHVDLVKLLLSKGSDIN------IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR  189 (237)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCC------ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            99999999999999999999988      6788999999999987653       2368999999999999999999999


Q ss_pred             HHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHh
Q psy11714        178 IELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLE  212 (272)
Q Consensus       178 ~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~  212 (272)
                      .+++++|+++|+++       .|||++|+..++.+.+..|++
T Consensus       190 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998       377777777776655555443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=2.2e-30  Score=214.85  Aligned_cols=158  Identities=20%  Similarity=0.169  Sum_probs=142.3

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---h-------hhHHHHHHHcCcHHHHHHHHccccccccCCCCcccc
Q psy11714         67 INCVDPLNRSSLIAAIENENIELINILLEYNIQ---V-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSE  136 (272)
Q Consensus        67 ~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  136 (272)
                      ++.+|..|.||||+|+..|+.+++++|+++|++   +       .||||+|+..|+.+++++|+++|++++         
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---------   72 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---------   72 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---------
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence            467889999999999999999999999999887   4       389999999999999999999886554         


Q ss_pred             CCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--------------------------
Q psy11714        137 NKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQ--------------------------  190 (272)
Q Consensus       137 ~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~--------------------------  190 (272)
                                             .+|..|.||||+|+..|+.+++++|+++|++                          
T Consensus        73 -----------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (282)
T 1oy3_D           73 -----------------------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA  129 (282)
T ss_dssp             -----------------------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------
T ss_pred             -----------------------CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhh
Confidence                                   6778899999999999999999999988754                          


Q ss_pred             ---------------------c-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCC-CCCCc
Q psy11714        191 ---------------------V-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTF-TPDIT  241 (272)
Q Consensus       191 ---------------------~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~t  241 (272)
                                           +       .||||+|+..|+.+++++|+++|++++               ..+ ..|.|
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------~~~~~~g~t  194 (282)
T 1oy3_D          130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN---------------KPEPTCGRT  194 (282)
T ss_dssp             --------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT---------------CCCTTTCCC
T ss_pred             hccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC---------------CCCCCCCcC
Confidence                                 1       489999999999999999999999998               455 45999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        242 PLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       242 ~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      |||+|+..|+.+++++|+++|++++.++..
T Consensus       195 pL~~A~~~~~~~~v~~Ll~~gad~~~~d~~  224 (282)
T 1oy3_D          195 PLHLAVEAQAASVLELLLKAGADPTARMYG  224 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccccC
Confidence            999999999999999999999999998854

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=4.7e-30  Score=207.69  Aligned_cols=185  Identities=15%  Similarity=0.145  Sum_probs=164.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCc
Q psy11714         67 INCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKG  139 (272)
Q Consensus        67 ~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  139 (272)
                      ++..|.+|.|+|+.|+..|+.+++++|++.|++++       ||||+|+..++.+++++|+++|++++.     ..+..+
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----~~~~~~   76 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ-----LGGDLN   76 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----CBTTTT
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh-----hcCCcC
Confidence            45678889999999999999999999999999984       699999999999999999999988762     334568


Q ss_pred             ccHHHHHHhcCCCCc-------cccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCC-H
Q psy11714        140 RTIFMMLDELKDQPE-------VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEY-V  204 (272)
Q Consensus       140 ~t~l~~~~~~~~~~~-------~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~-~  204 (272)
                      .|||++|+..+....       +.+++..+..|.||||+|+..|+.+++++|+++|+++       .||||+|+..+. .
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV  156 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence            999999998765322       6788999999999999999999999999999999888       499999996665 8


Q ss_pred             HHHHHHHhcCccCCCCCCcchhhhhhcCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        205 EAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT-PDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       205 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      +++++|+++|++++               ..+. .|.||||+|+..++.+++++|+++|++++..+..
T Consensus       157 ~~~~~L~~~~~~~~---------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  209 (240)
T 3eu9_A          157 DPTRLLLTFNVSVN---------------LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK  209 (240)
T ss_dssp             TTHHHHHHTTCCTT---------------CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTT
T ss_pred             HHHHHHHhcCCCcc---------------hhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            99999999999998               4554 8999999999999999999999999999988754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=1e-29  Score=204.66  Aligned_cols=175  Identities=17%  Similarity=0.200  Sum_probs=156.0

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCC--CChh-------h
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINC-VDPLNRSSLIAAIENENIELINILLEYN--IQVK-------D  102 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~-------t  102 (272)
                      ..+.++|++|+..|+.++++.|++.+.    ..+++. .+..|.||||+|+..|+.+++++|+++|  ++++       |
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t  109 (228)
T 2dzn_A           34 QDGRIPLHWSVSFQAHEITSFLLSKME----NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT  109 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTCT----TCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccc----cccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCC
Confidence            456778999999999999999999862    255666 7889999999999999999999999998  6663       7


Q ss_pred             HHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHH
Q psy11714        103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELIN  182 (272)
Q Consensus       103 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~  182 (272)
                      |||+|+..++.+++++|+++|++                                ++.+|..|.||||+|+..|+.++++
T Consensus       110 ~L~~A~~~~~~~~~~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A          110 CLHLAVGKKWFEVSQFLIENGAS--------------------------------VRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC--------------------------------SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHhHHHHHHHcCCC--------------------------------ccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999998755                                4477889999999999999999999


Q ss_pred             HHHhCC-CCc-------hhHHHHHHHcCCHHHHHHHH-hcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        183 ILLEYN-IQV-------KDALLHAIKEEYVEAVEILL-EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       183 ~Ll~~g-~~~-------~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      +|+++| +++       +||||+|+..++.+++++|+ ++|++++               .+|..|.||+++|+..   +
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~---------------~~~~~g~t~l~~A~~~---~  219 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD---------------LVDNKGAKAEDVALNE---Q  219 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC---------------CBCTTSCBGGGGCSST---T
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC---------------ccCCCCCcHHHHHHHH---H
Confidence            999999 776       59999999999999999999 8999999               7889999999999754   6


Q ss_pred             HHHHHHHC
Q psy11714        254 ILKILLDR  261 (272)
Q Consensus       254 iv~~Ll~~  261 (272)
                      ++++|+++
T Consensus       220 ~~~~l~~~  227 (228)
T 2dzn_A          220 VKKFFLNN  227 (228)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            77777764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=5.2e-30  Score=201.39  Aligned_cols=150  Identities=26%  Similarity=0.228  Sum_probs=138.9

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCC
Q psy11714         66 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENK  138 (272)
Q Consensus        66 ~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  138 (272)
                      .+|.+|..|.||||+|+..|+.+++++|+++|++++       ||||+|+..++.+++++|+++|+++            
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------   94 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV------------   94 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC------------
Confidence            456788999999999999999999999999998874       7999999999999999999987554            


Q ss_pred             cccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHH
Q psy11714        139 GRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILL  211 (272)
Q Consensus       139 ~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll  211 (272)
                                          +.+|..|.||||+|+..|+.+++++|+++|+++       .||||+|+..++.+++++|+
T Consensus        95 --------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  154 (192)
T 2rfm_A           95 --------------------NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL  154 (192)
T ss_dssp             --------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             --------------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                467889999999999999999999999999988       59999999999999999999


Q ss_pred             hcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy11714        212 EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG  262 (272)
Q Consensus       212 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~g  262 (272)
                      ++|++++               .++..|.||||+|+..++.+++++|+++|
T Consensus       155 ~~ga~~~---------------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          155 ELGADIS---------------ARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HTTCCTT---------------CBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HCCCCCC---------------CcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999998               78899999999999999999999999876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3.5e-30  Score=213.95  Aligned_cols=174  Identities=20%  Similarity=0.245  Sum_probs=156.1

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-Chh-------hHHHHHH--
Q psy11714         39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI-QVK-------DALLHAI--  108 (272)
Q Consensus        39 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~-------t~l~~A~--  108 (272)
                      ++.|+..|+.+.++.++..+.    ...+|.+|..|.||||+|+..|+.+++++|+++|+ +++       ||||+|+  
T Consensus        80 l~~a~~~~~~~~~~~l~~~~~----~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           80 AHPELVRRHLVTFRAMSARLL----DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             CCHHHHHHHHHHHHHHCHHHH----HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             CCHHHHHHHHHHHHHHHHHHH----hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            467788889999999988751    13488999999999999999999999999999998 663       7999999  


Q ss_pred             ---HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11714        109 ---KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL  185 (272)
Q Consensus       109 ---~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll  185 (272)
                         ..++.+++++|+++|+.                                .+..+..|.||||+|+..|+.+++++|+
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll  203 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNI--------------------------------NAKASQAGQTALMLAVSHGRVDVVKALL  203 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCT--------------------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCC--------------------------------ccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence               66889999999998744                                3466788999999999999999999999


Q ss_pred             hCCCCc-------hhHHHHHHHcCCHHHHHHHHh-cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy11714        186 EYNIQV-------KDALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKI  257 (272)
Q Consensus       186 ~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~  257 (272)
                      ++|+++       .||||+|+..|+.+++++|++ .|++++               .+|..|.||||+|+..|+.+++++
T Consensus       204 ~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~---------------~~d~~g~TpL~~A~~~g~~~iv~~  268 (276)
T 4hbd_A          204 ACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS---------------LTDRDGSTALMVALDAGQSEIASM  268 (276)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT---------------CCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc---------------CcCCCCCCHHHHHHHcCCHHHHHH
Confidence            999998       599999999999999999999 899999               788999999999999999999999


Q ss_pred             HHHCCC
Q psy11714        258 LLDRGA  263 (272)
Q Consensus       258 Ll~~ga  263 (272)
                      |++++.
T Consensus       269 Ll~~~~  274 (276)
T 4hbd_A          269 LYSRMN  274 (276)
T ss_dssp             HHHHCC
T ss_pred             HHhccC
Confidence            999863

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=1.6e-28  Score=198.25  Aligned_cols=152  Identities=22%  Similarity=0.219  Sum_probs=139.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHC-CCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHH
Q psy11714         73 LNRSSLIAAIENENIELINILLEY-NIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFM  144 (272)
Q Consensus        73 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~  144 (272)
                      .|.||||+|+..|+.+++++|++. |++++       ||||+|+..|+.+++++|+++|+++..                
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----------------   65 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF----------------   65 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG----------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc----------------
Confidence            488999999999999999999998 88884       799999999999999999999987641                


Q ss_pred             HHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--------------------hhHHHHHHHcCCH
Q psy11714        145 MLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV--------------------KDALLHAIKEEYV  204 (272)
Q Consensus       145 ~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~--------------------~t~l~~A~~~~~~  204 (272)
                                 ...+..|..|.||||+|+..|+.+++++|+++|+++                    .||||+|+..|+.
T Consensus        66 -----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  134 (232)
T 2rfa_A           66 -----------EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE  134 (232)
T ss_dssp             -----------CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH
T ss_pred             -----------ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH
Confidence                       334677889999999999999999999999999876                    4899999999999


Q ss_pred             HHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCCC
Q psy11714        205 EAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEIL----KILLDRGATLP  266 (272)
Q Consensus       205 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv----~~Ll~~ga~~~  266 (272)
                      +++++|+++|++++               .+|..|.||||+|+..++.+++    ++|+++|++++
T Consensus       135 ~~v~~Ll~~ga~~~---------------~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          135 EIVRLLIEHGADIR---------------AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             HHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHHHHCCCCCC---------------CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            99999999999999               7889999999999999999988    99999999884

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.6e-29  Score=191.03  Aligned_cols=150  Identities=21%  Similarity=0.263  Sum_probs=100.7

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHA  107 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A  107 (272)
                      ..++|+.|+..|+.+.+++|++.+      .+++.++..|.||||+|+. |+.+++++|+++|++++       ||||+|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNN------VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDA   77 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSC------CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCC------CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            456677777777777777777765      7777777777777777776 77777777776666552       355555


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY  187 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~  187 (272)
                      +..++.+++++|+++|+++                                +.+|..|.                     
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~--------------------------------~~~~~~g~---------------------  104 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADV--------------------------------NIEDNEGN---------------------  104 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCT--------------------------------TCCCTTSC---------------------
T ss_pred             HHcCCHHHHHHHHHcCCCC--------------------------------CCcCCCCC---------------------
Confidence            5555555555555444322                                23344444                     


Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHhcCcc-CCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy11714        188 NIQVKDALLHAIKEEYVEAVEILLEWEEK-IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT  264 (272)
Q Consensus       188 g~~~~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~  264 (272)
                           ||||+|+..++.+++++|+++|++ ++               .++..|.||||+|+..++.+++++|+++|||
T Consensus       105 -----t~L~~A~~~~~~~~v~~Ll~~g~~~~~---------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          105 -----LPLHLAAKEGHLRVVEFLVKHTASNVG---------------HRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             -----CHHHHHHHTTCHHHHHHHHHHSCCCTT---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             -----CHHHHHHHcCCHHHHHHHHHccCCCCC---------------CcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence                 455555555666666666666665 35               6778899999999999999999999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=5.4e-30  Score=207.68  Aligned_cols=156  Identities=21%  Similarity=0.147  Sum_probs=137.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHCCC----Ch-------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccC
Q psy11714         69 CVDPLNRSSLIAAIENENIELINILLEYNI----QV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSEN  137 (272)
Q Consensus        69 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  137 (272)
                      .+|..|.||||+|+..|+.+++++|++.+.    ++       .||||+|+..++.+++++|+++|+++           
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------   71 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-----------   71 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-----------
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence            477899999999999999999999998765    34       38999999999999999999987654           


Q ss_pred             CcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------------hhHHHHHHHcCCH
Q psy11714        138 KGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------------KDALLHAIKEEYV  204 (272)
Q Consensus       138 ~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------------~t~l~~A~~~~~~  204 (272)
                                           +.+|..|.||||+|+..|+.+++++|++.|++.             .||||+|+..++.
T Consensus        72 ---------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  130 (236)
T 1ikn_D           72 ---------------------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL  130 (236)
T ss_dssp             ---------------------CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH
T ss_pred             ---------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCH
Confidence                                 467889999999999999999999999998752             5999999999999


Q ss_pred             HHHHHHHhcCccCCCCCCcchhhhhhcCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        205 EAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT-PDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       205 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      +++++|+++|++++               .++. .|.||||+|+..|+.+++++|+++|++++.++.+
T Consensus       131 ~~v~~Ll~~g~~~~---------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  183 (236)
T 1ikn_D          131 GIVELLVSLGADVN---------------AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ  183 (236)
T ss_dssp             HHHHHHHHHTCCTT---------------CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT
T ss_pred             HHHHHHHHcCCCCC---------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCC
Confidence            99999999999998               6666 8999999999999999999999999999998865

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.1e-28  Score=189.92  Aligned_cols=151  Identities=23%  Similarity=0.258  Sum_probs=106.9

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCc
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEY  112 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~  112 (272)
                      ....+.|+.|+..|+.+++++|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++           
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------   74 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANG------ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-----------   74 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------
Confidence            34456777888888888888888776      7777777777778777777777777777777666542           


Q ss_pred             HHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-
Q psy11714        113 VEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-  191 (272)
Q Consensus       113 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-  191 (272)
                                                                     .+|..|.||||+|+..|+.+++++|+++|+++ 
T Consensus        75 -----------------------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  107 (169)
T 2y1l_E           75 -----------------------------------------------AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN  107 (169)
T ss_dssp             -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             -----------------------------------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                                                           23344555555555555555555555555444 


Q ss_pred             ------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy11714        192 ------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG  262 (272)
Q Consensus       192 ------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~g  262 (272)
                            .||||+|+..++.+++++|+++|++++               .++..|.|||++|+..++.+++++|+++|
T Consensus       108 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN---------------AQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------CcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence                  356666666667777777777777777               67888999999999999999999999887

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=4.9e-29  Score=192.31  Aligned_cols=157  Identities=20%  Similarity=0.241  Sum_probs=104.9

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEA  115 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~  115 (272)
                      ..+|+.|+..|+.+.++++++.+     ...++.++..|.||||+|+..|+.+++++|+++|++++              
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------   63 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKG-----DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH--------------   63 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTC-----SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT--------------
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcC-----cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch--------------
Confidence            34677888888888888888776     24477777778788887777777777777777666652              


Q ss_pred             HHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc----
Q psy11714        116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV----  191 (272)
Q Consensus       116 ~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~----  191 (272)
                                                                  .++..|.||||+|+..|+.+++++|+++|+++    
T Consensus        64 --------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   99 (172)
T 3v30_A           64 --------------------------------------------ILAKERESALSLASTGGYTDIVGLLLERDVDINIYD   99 (172)
T ss_dssp             --------------------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             --------------------------------------------hhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC
Confidence                                                        22334444444444444444444444444444    


Q ss_pred             ---hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy11714        192 ---KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMP  268 (272)
Q Consensus       192 ---~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~  268 (272)
                         .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..++.+++++|+++|+++..+
T Consensus       100 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  164 (172)
T 3v30_A          100 WNGGTPLLYAVRGNHVKCVEALLARGADLT---------------TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS  164 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCcc---------------ccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence               245555555666666677777777776               66778888888888888888888888888877766


Q ss_pred             CC
Q psy11714        269 HD  270 (272)
Q Consensus       269 ~~  270 (272)
                      +.
T Consensus       165 ~~  166 (172)
T 3v30_A          165 NL  166 (172)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=2.8e-29  Score=213.41  Aligned_cols=174  Identities=20%  Similarity=0.192  Sum_probs=143.9

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHc
Q psy11714         39 FLLVAERGDCATVRKMLDELKDQPEVFNINC-VDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKE  110 (272)
Q Consensus        39 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~  110 (272)
                      ++.++..+..++++.|++.|      +++|. +|..|.||||+|+..|+.++|++|+++|++++       ||||+|+..
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g------~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~  174 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQ------LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS  174 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSC------CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS
T ss_pred             hHHHHHhhHHHHHHHHHhcC------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh
Confidence            45666666777778888776      99999 89999999999999999999999999999984       799999999


Q ss_pred             Cc---HHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHH----cCCHHHHHH
Q psy11714        111 EY---VEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIE----NENIELINI  183 (272)
Q Consensus       111 ~~---~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~----~g~~~~~~~  183 (272)
                      |+   .++++.|++++.                               .+++.+|..|.||||+|+.    .|+.+++++
T Consensus       175 g~~~~~~~~~~ll~~~~-------------------------------~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~  223 (327)
T 1sw6_A          175 VNNYDSGTFEALLDYLY-------------------------------PCLILEDSMNRTILHHIIITSGMTGCSAAAKY  223 (327)
T ss_dssp             SHHHHTTCHHHHHHHHG-------------------------------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHH
T ss_pred             cccccHHHHHHHHHhhh-------------------------------ccccCCCCCCCCHHHHHHHHccccccHHHHHH
Confidence            88   678888888652                               2356778899999999998    899999999


Q ss_pred             HHhC--------------------CCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCC
Q psy11714        184 LLEY--------------------NIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTF  236 (272)
Q Consensus       184 Ll~~--------------------g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  236 (272)
                      |++.                    |+++       .||||+|+.      +++|+++  +++               .++
T Consensus       224 Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n---------------~~d  280 (327)
T 1sw6_A          224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLN---------------AQD  280 (327)
T ss_dssp             HHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTT---------------CCC
T ss_pred             HHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCC---------------CCC
Confidence            9876                    6666       589999885      8889988  455               678


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        237 TPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       237 ~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      ..|.||||+|+..|+.++|++|+++||+++.+|.++
T Consensus       281 ~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G  316 (327)
T 1sw6_A          281 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG  316 (327)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            899999999999999999999999999999998653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=2.3e-29  Score=210.77  Aligned_cols=174  Identities=18%  Similarity=0.094  Sum_probs=145.2

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      ..+.++||+|+..|+.++++.|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++       ||||
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g------a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  144 (299)
T 1s70_B           71 VDGLTALHQACIDDNVDMVKFLVENG------ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD  144 (299)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence            45678899999999999999999997      9999999999999999999999999999999999884       7999


Q ss_pred             HHHHcCcHHHHHHHHc-ccccccc--------------------CCCCccccCCcccHHHHHHhcCCC-------Ccccc
Q psy11714        106 HAIKEEYVEAVEILLE-WEEKIHV--------------------HGQPYVSENKGRTIFMMLDELKDQ-------PEVFN  157 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~-~g~~~~~--------------------~~~~~~~~~~~~t~l~~~~~~~~~-------~~~~~  157 (272)
                      +|+..++.++++.++. .|++++.                    .......+..|.||||+|+..+..       ..+++
T Consensus       145 ~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d  224 (299)
T 1s70_B          145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (299)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             HHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence            9999999999987775 3443321                    001123456799999999987653       23689


Q ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhc
Q psy11714        158 INCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEW  213 (272)
Q Consensus       158 ~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~  213 (272)
                      ++.+|..|.||||+|+..|+.+++++|+++|+++       .|||++|+.. ..+.++.+++.
T Consensus       225 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence            9999999999999999999999999999999998       5999999764 45555555554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=9e-29  Score=189.94  Aligned_cols=152  Identities=18%  Similarity=0.215  Sum_probs=100.0

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEA  115 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~  115 (272)
                      .++||.|+..|+.+.+++|++.+      .+++.+|..|.||||+|+..|+.+++++|+++|++++              
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------   63 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ--------------   63 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHS------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------
T ss_pred             cchHHHHHHCCCHHHHHHHHHcC------CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--------------
Confidence            45566666666666666666665      5566666666666666666666666666666555542              


Q ss_pred             HHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc----
Q psy11714        116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV----  191 (272)
Q Consensus       116 ~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~----  191 (272)
                                                                  ..+..|.||||+|+..|+.+++++|+++|+++    
T Consensus        64 --------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   99 (167)
T 3v31_A           64 --------------------------------------------LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD   99 (167)
T ss_dssp             --------------------------------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC
T ss_pred             --------------------------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCC
Confidence                                                        33344555555555555555555555555444    


Q ss_pred             ---hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        192 ---KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       192 ---~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                         .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..|+.+++++|+++++++.
T Consensus       100 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          100 WNGGTPLLYAVHGNHVKCVKMLLESGADPT---------------IETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------CcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence               355666666667777777777777777               677888999999999999999999998887644

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.7e-28  Score=188.19  Aligned_cols=123  Identities=16%  Similarity=0.179  Sum_probs=96.0

Q ss_pred             hccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------h
Q psy11714         30 VALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------D  102 (272)
Q Consensus        30 ~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t  102 (272)
                      .......++|++|+..|+.+++++|++.|      ++++.++..|.||||+|+..|+.+++++|+++|++++       |
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  104 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEWG------ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGT  104 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcC------CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            33455678999999999999999999997      9999999999999999999999999999999887763       5


Q ss_pred             HHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHH
Q psy11714        103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELIN  182 (272)
Q Consensus       103 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~  182 (272)
                      |||+|+..++.+++++|+++|+++                                +.+|..|.||||+|+..|+.++++
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~ga~~--------------------------------~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A          105 PLLYAVRGNHVKCVEALLARGADL--------------------------------TTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc--------------------------------cccCCCCCCHHHHHHHhCcHHHHH
Confidence            777777777777777777765443                                355666677777776666666666


Q ss_pred             HHHhCCCC
Q psy11714        183 ILLEYNIQ  190 (272)
Q Consensus       183 ~Ll~~g~~  190 (272)
                      +|+++|++
T Consensus       153 ~L~~~~~~  160 (172)
T 3v30_A          153 VIENHILK  160 (172)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.9e-27  Score=183.05  Aligned_cols=119  Identities=25%  Similarity=0.289  Sum_probs=108.4

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l  104 (272)
                      .....++|+.|+..|+.+++++|++.|      ++++..|..|.||||+|+..|+.+++++|+++|++++       |||
T Consensus        44 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  117 (169)
T 2y1l_E           44 DASGWTPLHLAAFNGHLEIVEVLLKNG------ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL  117 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            345678899999999999999999997      9999999999999999999999999999999999884       799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL  184 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~L  184 (272)
                      |+|+..++.+++++|+++|+++                                +.+|..|.|||++|+..|+.+++++|
T Consensus       118 ~~A~~~~~~~~v~~Ll~~g~~~--------------------------------~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E          118 HLAAMFGHLEIVEVLLKNGADV--------------------------------NAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC--------------------------------CCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            9999999999999999987554                                47788999999999999999999999


Q ss_pred             HhCC
Q psy11714        185 LEYN  188 (272)
Q Consensus       185 l~~g  188 (272)
                      +++|
T Consensus       166 ~~~G  169 (169)
T 2y1l_E          166 QKLN  169 (169)
T ss_dssp             HTC-
T ss_pred             HHcC
Confidence            9876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=2.6e-27  Score=186.92  Aligned_cols=153  Identities=22%  Similarity=0.312  Sum_probs=139.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCC-Ch-------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHH
Q psy11714         72 PLNRSSLIAAIENENIELINILLEYNI-QV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIF  143 (272)
Q Consensus        72 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l  143 (272)
                      .++.||||.|+..|+.+.++.|+..+. ++       .||||+|+..++.+++++|+++|+++                 
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------   65 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-----------------   65 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------------
Confidence            568899999999999999999999876 66       37999999999999999999987654                 


Q ss_pred             HHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCc-------hhHHHHHHHcCCHHHHHHHHhcC-
Q psy11714        144 MMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL-EYNIQV-------KDALLHAIKEEYVEAVEILLEWE-  214 (272)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll-~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g-  214 (272)
                                     +.++..|.||||+|+..|+.+++++|+ ..++++       .||||+|+..++.+++++|+++| 
T Consensus        66 ---------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  130 (201)
T 3hra_A           66 ---------------NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR  130 (201)
T ss_dssp             ---------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred             ---------------CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence                           467889999999999999999999999 556565       59999999999999999999999 


Q ss_pred             ccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHCCCCCCCCCCC
Q psy11714        215 EKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN-----YEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      ++++               .++..|.||||+|+..+.     .+++++|+++|++++.++..
T Consensus       131 ~~~~---------------~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~  177 (201)
T 3hra_A          131 EDID---------------FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS  177 (201)
T ss_dssp             CCTT---------------CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCcC---------------CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCC
Confidence            8888               788899999999999998     99999999999999998865

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.9e-28  Score=188.05  Aligned_cols=157  Identities=15%  Similarity=0.086  Sum_probs=113.1

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVE  114 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~  114 (272)
                      ..++|+.|+..|+.+.++.|++.+     +.+++..+..|.||||+|+..|+.+++++|+++|++++             
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------   66 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNT-----ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-------------   66 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCT-----TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcC-----cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-------------
Confidence            456688888888888888888876     37778888888888888888777777777777766652             


Q ss_pred             HHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---
Q psy11714        115 AVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV---  191 (272)
Q Consensus       115 ~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~---  191 (272)
                                                                   .+|..|.||||+|+..|+.+++++|+++|+++   
T Consensus        67 ---------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  101 (179)
T 3f6q_A           67 ---------------------------------------------VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV  101 (179)
T ss_dssp             ---------------------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ---------------------------------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence                                                         23334445555555555555555555555444   


Q ss_pred             ----hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy11714        192 ----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPM  267 (272)
Q Consensus       192 ----~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~  267 (272)
                          .||||+|+..++.+++++|+++|++++               .++..|.|||++|+..++.+++++|+++|++++.
T Consensus       102 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          102 NEHGNVPLHYACFWGQDQVAEDLVANGALVS---------------ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS---------------BCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc---------------hhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence                355555666667777777777887777               6788899999999999999999999999999987


Q ss_pred             CC
Q psy11714        268 PH  269 (272)
Q Consensus       268 ~~  269 (272)
                      .+
T Consensus       167 ~~  168 (179)
T 3f6q_A          167 IP  168 (179)
T ss_dssp             BC
T ss_pred             CC
Confidence            54

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=6.2e-28  Score=184.16  Aligned_cols=124  Identities=15%  Similarity=0.116  Sum_probs=111.3

Q ss_pred             hhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------
Q psy11714         29 EVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------  101 (272)
Q Consensus        29 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------  101 (272)
                      ........++|+.|+. |+.++++.|++.|      ++++.++..|.||||+|+..|+.+++++|+++|++++       
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  104 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIARRLLLRG------ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN  104 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccCccCccHHHHHHc-CcHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            3444556789999999 9999999999997      9999999999999999999999999999999999884       


Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      ||||+|+..++.+++++|+++|++.                               ++.++..|.||||+|+..|+.+++
T Consensus       105 t~L~~A~~~~~~~~v~~Ll~~g~~~-------------------------------~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A          105 LPLHLAAKEGHLRVVEFLVKHTASN-------------------------------VGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCCC-------------------------------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHccCCC-------------------------------CCCcCCCCCcHHHHHHHcCCHHHH
Confidence            7999999999999999999987542                               357788999999999999999999


Q ss_pred             HHHHhCCCC
Q psy11714        182 NILLEYNIQ  190 (272)
Q Consensus       182 ~~Ll~~g~~  190 (272)
                      ++|+++|+|
T Consensus       154 ~~Ll~~GAd  162 (162)
T 1ihb_A          154 SLMQANGAG  162 (162)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHhCCC
Confidence            999999986

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.3e-27  Score=183.14  Aligned_cols=153  Identities=20%  Similarity=0.219  Sum_probs=111.4

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcC
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEE  111 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~  111 (272)
                      .+...++|+.|+..|+.+.++.|++.+     +.+++..+..|.||||+|+..|+.+++++|+++|++++          
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------   69 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ-----SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH----------   69 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT-----TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC-----CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC----------
Confidence            355677889999999999999988866     37777888888888888888888888888887766652          


Q ss_pred             cHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc
Q psy11714        112 YVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV  191 (272)
Q Consensus       112 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~  191 (272)
                                                                      .+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        70 ------------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  101 (165)
T 3twr_A           70 ------------------------------------------------AKDKGGLVPLHNACSYGHYEVAELLVKHGAVV  101 (165)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ------------------------------------------------ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Confidence                                                            33344555555555555555555555555544


Q ss_pred             -------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy11714        192 -------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA  263 (272)
Q Consensus       192 -------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga  263 (272)
                             .||||+|+..++.+++++|+++|++++               .++..|.||||+|+. ++.+++++|+++||
T Consensus       102 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---------------KKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc---------------ccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence                   256666666677777777778887777               778899999999876 89999999999987

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.8e-27  Score=179.11  Aligned_cols=143  Identities=22%  Similarity=0.284  Sum_probs=96.7

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEA  115 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~  115 (272)
                      .++|+.|+..|+.+.+++|++.|      .+++ .+..|.||||+|+..|+.+++++|+++|+++               
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g------~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------------   60 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANG------APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---------------   60 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT------CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcC------CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---------------
Confidence            45666777777777777777665      4444 3556666666666666666666666655544               


Q ss_pred             HHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc----
Q psy11714        116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV----  191 (272)
Q Consensus       116 ~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~----  191 (272)
                                                                 +.++..|.||||+|+..|+.+++++|+++|+++    
T Consensus        61 -------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   97 (153)
T 1awc_B           61 -------------------------------------------DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD   97 (153)
T ss_dssp             -------------------------------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred             -------------------------------------------CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCC
Confidence                                                       233444555555555555555555555555554    


Q ss_pred             ---hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy11714        192 ---KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKIL  258 (272)
Q Consensus       192 ---~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  258 (272)
                         .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..|+.+++++|
T Consensus        98 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           98 MLKMTALHWATEHNHQEVVELLIKYGADVH---------------TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCcc---------------ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence               356666666677777777777887777               6788899999999999999999987

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=3e-27  Score=181.40  Aligned_cols=123  Identities=17%  Similarity=0.165  Sum_probs=105.9

Q ss_pred             hhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------
Q psy11714         29 EVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------  101 (272)
Q Consensus        29 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------  101 (272)
                      ........++|++|+..|+.++++.|++.|      ++++..+..|.||||+|+..|+.+++++|+++|++++       
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  103 (167)
T 3v31_A           30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNG------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG  103 (167)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcC------CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCC
Confidence            334455678999999999999999999997      9999999999999999999999999999999998884       


Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      ||||+|+..++.+++++|+++|+++                                +.+|..|.|||++|+..|+.+++
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~g~~~--------------------------------~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A          104 TPLLYAVHGNHVKCVKMLLESGADP--------------------------------TIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC--------------------------------CCcCCCCCCHHHHHHHcCcHHHH
Confidence            6888888888888888888877544                                46777888888888888888888


Q ss_pred             HHHHhCCC
Q psy11714        182 NILLEYNI  189 (272)
Q Consensus       182 ~~Ll~~g~  189 (272)
                      ++|++++.
T Consensus       152 ~~L~~~~~  159 (167)
T 3v31_A          152 QVIESHLL  159 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.8e-28  Score=199.32  Aligned_cols=151  Identities=14%  Similarity=0.106  Sum_probs=110.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCChh------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHH
Q psy11714         72 PLNRSSLIAAIENENIELINILLEYNIQVK------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMM  145 (272)
Q Consensus        72 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~  145 (272)
                      ..|.||||.|+..++.++++.|+++|++++      ||||.|+..|+.+++++|+++|++                    
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------   62 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD--------------------   62 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS--------------------
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCC--------------------
Confidence            468999999999999999999999999885      799999999999999999998754                    


Q ss_pred             HHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCC
Q psy11714        146 LDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIH  218 (272)
Q Consensus       146 ~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~  218 (272)
                                  ++.+|..|.||||+|+..|+.+++++|+++|+++       .||||+|+..++.+++++|+++|++++
T Consensus        63 ------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  130 (239)
T 1ycs_B           63 ------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF  130 (239)
T ss_dssp             ------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence                        4577889999999999999999999999999988       599999999999999999999999998


Q ss_pred             CCCCcchhhhhhcCCCCCCCCC-cHHHHH--HHcCCHHHHHHHHHCCCCCCCCC
Q psy11714        219 VHGQPYSWEAVDRSSSTFTPDI-TPLILA--AHMNNYEILKILLDRGATLPMPH  269 (272)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~iv~~Ll~~ga~~~~~~  269 (272)
                                     ..+..|. ||||+|  +..|+.+++++|+++|++++..+
T Consensus       131 ---------------~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~  169 (239)
T 1ycs_B          131 ---------------AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN  169 (239)
T ss_dssp             ---------------CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred             ---------------eecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccc
Confidence                           5666666 999999  78899999999999999988754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=1.9e-27  Score=194.93  Aligned_cols=163  Identities=20%  Similarity=0.155  Sum_probs=139.7

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHCCCChh-----------hHHHHHHHc---CcHHHHHHHHccccccccCCCCcc
Q psy11714         73 LNRSSLIAAIENENIE----LINILLEYNIQVK-----------DALLHAIKE---EYVEAVEILLEWEEKIHVHGQPYV  134 (272)
Q Consensus        73 ~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~-----------t~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~  134 (272)
                      +|+||||.|+..|+.+    ++++|+++|++++           ||||+|+..   |+.+++++|+++|++++.....  
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~--   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL--   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG--
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh--
Confidence            5889999999999996    6677788887763           799999999   9999999999999887621000  


Q ss_pred             ccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--------------------hhH
Q psy11714        135 SENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV--------------------KDA  194 (272)
Q Consensus       135 ~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~--------------------~t~  194 (272)
                                         .......+|..|.||||+|+..|+.+++++|+++|+++                    .||
T Consensus        79 -------------------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp  139 (256)
T 2etb_A           79 -------------------VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP  139 (256)
T ss_dssp             -------------------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred             -------------------cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH
Confidence                               00223345678999999999999999999999999885                    389


Q ss_pred             HHHHHHcCCHHHHHHHHh---cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHH--cCCHH-------HHHHHHHCC
Q psy11714        195 LLHAIKEEYVEAVEILLE---WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAH--MNNYE-------ILKILLDRG  262 (272)
Q Consensus       195 l~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~--~~~~~-------iv~~Ll~~g  262 (272)
                      ||+|+..|+.+++++|++   +|++++               .+|..|.||||+|+.  .++.+       ++++|+++|
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n---------------~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g  204 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLE---------------ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG  204 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTT---------------CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcC---------------ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC
Confidence            999999999999999999   999999               788999999999999  78888       999999999


Q ss_pred             CCC-------CCCCCC
Q psy11714        263 ATL-------PMPHDV  271 (272)
Q Consensus       263 a~~-------~~~~~~  271 (272)
                      +++       +..|..
T Consensus       205 a~~~~~~~~~~~~d~~  220 (256)
T 2etb_A          205 ARLCPTVQLEEISNHQ  220 (256)
T ss_dssp             HHHSTTCCGGGCCCTT
T ss_pred             CCcccccccccccCCC
Confidence            999       777754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=1e-26  Score=179.02  Aligned_cols=127  Identities=24%  Similarity=0.343  Sum_probs=116.4

Q ss_pred             ChhhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCH
Q psy11714         99 QVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI  178 (272)
Q Consensus        99 ~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~  178 (272)
                      ++.++|+.|+..|+.++|++|+++|+++                                +.+|..|.||||+|+..++.
T Consensus         3 dlg~~L~~Aa~~G~~~~v~~Ll~~Gadv--------------------------------n~~d~~g~t~l~~a~~~~~~   50 (169)
T 4gpm_A            3 ELGKRLIEAAENGNKDRVKDLIENGADV--------------------------------NASDSDGRTPLHHAAENGHK   50 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCCC--------------------------------CCcCCCCCCHHHHHHHcCCH
Confidence            3457899999999999999999987654                                47788999999999999999


Q ss_pred             HHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC
Q psy11714        179 ELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN  251 (272)
Q Consensus       179 ~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  251 (272)
                      +++++|+++|+++       .||||+|+..|+.+++++|+++|++++               .+|..|.||||+|+..|+
T Consensus        51 ~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn---------------~~d~~G~TpLh~A~~~g~  115 (169)
T 4gpm_A           51 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN---------------AKDSDGRTPLHHAAENGH  115 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCC---------------CCCCCCCCHHHHHHHcCC
Confidence            9999999999988       599999999999999999999999999               788999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCC
Q psy11714        252 YEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       252 ~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      .++|++|+++|++++.+|..+
T Consensus       116 ~~~v~~Ll~~gad~~~~d~~G  136 (169)
T 4gpm_A          116 KEVVKLLISKGADVNTSDSDG  136 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHHHHcCCCccccCCCC
Confidence            999999999999999998653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=9.7e-28  Score=198.60  Aligned_cols=167  Identities=20%  Similarity=0.195  Sum_probs=137.3

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCh-----------hhHHHHHHHc---CcHHHHHHHHcccccc
Q psy11714         65 FNINCVDPLNRSSLIAAIENENIELINILLE----YNIQV-----------KDALLHAIKE---EYVEAVEILLEWEEKI  126 (272)
Q Consensus        65 ~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~-----------~t~l~~A~~~---~~~~~~~~Ll~~g~~~  126 (272)
                      +..+..|..|.||||+|+..|+.++|+.|++    .+.++           .||||+|+..   |+.+++++|+++|++.
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            5667788999999999999999999988886    44443           4799999987   9999999999999875


Q ss_pred             ccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---------------
Q psy11714        127 HVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV---------------  191 (272)
Q Consensus       127 ~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~---------------  191 (272)
                      +.              +...+       .......|..|.||||+|+..|+.+++++|+++|+++               
T Consensus        84 ~~--------------~~~~i-------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  142 (273)
T 2pnn_A           84 DS--------------LKQFV-------NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGR  142 (273)
T ss_dssp             TC--------------HHHHH-------TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSS
T ss_pred             cc--------------hhHHh-------hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccc
Confidence            31              00000       0233446778999999999999999999999999886               


Q ss_pred             ------hhHHHHHHHcCCHHHHHHHHh---cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC---------HH
Q psy11714        192 ------KDALLHAIKEEYVEAVEILLE---WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN---------YE  253 (272)
Q Consensus       192 ------~t~l~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~---------~~  253 (272)
                            .||||+|+..|+.+++++|++   +|++++               .+|..|.||||+|+..++         .+
T Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~---------------~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  207 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS---------------ARDSVGNTVLHALVEVADNTVDNTKFVTS  207 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTT---------------CCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCce---------------eeCCCCCcHHHHHHHccCcchhHHHHHHH
Confidence                  289999999999999999999   999999               788999999999999988         89


Q ss_pred             HHHHHHHCCCCCCC
Q psy11714        254 ILKILLDRGATLPM  267 (272)
Q Consensus       254 iv~~Ll~~ga~~~~  267 (272)
                      ++++|+++|++++.
T Consensus       208 ~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          208 MYNEILILGAKLHP  221 (273)
T ss_dssp             HHHHHHHHHHHHCT
T ss_pred             HHHHHHHhhhhccc
Confidence            99999999999974

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=6.9e-27  Score=183.49  Aligned_cols=146  Identities=21%  Similarity=0.215  Sum_probs=135.4

Q ss_pred             ccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hH
Q psy11714         31 ALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DA  103 (272)
Q Consensus        31 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~  103 (272)
                      ....+.++|++|+..|+.+++++|++.+      .+++.++..|.||||+|+..|+.+++++|+++|++++       ||
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENF------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP  104 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHH------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhc------cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            3455678899999999999999999997      8999999999999999999999999999999999883       79


Q ss_pred             HHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11714        104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI  183 (272)
Q Consensus       104 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~  183 (272)
                      ||+|+..++.+++++|+++|++                                ++.+|..|.||||+|+..|+.+++++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~  152 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGAN--------------------------------VNDRNLEGETPLIVASKYGRSEIVKK  152 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC--------------------------------SSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC--------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999998755                                44778899999999999999999999


Q ss_pred             HHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcC
Q psy11714        184 LLEYNIQV-------KDALLHAIKEEYVEAVEILLEWE  214 (272)
Q Consensus       184 Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g  214 (272)
                      |+++|+++       .|||++|+..++.+++++|+++|
T Consensus       153 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          153 LLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999998       49999999999999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=6.5e-27  Score=181.68  Aligned_cols=125  Identities=13%  Similarity=0.047  Sum_probs=102.8

Q ss_pred             hhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------
Q psy11714         29 EVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------  101 (272)
Q Consensus        29 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------  101 (272)
                      ........++|+.|+..|+.++++.|++.|      ++++.+|..|.||||+|+..|+.+++++|+++|++++       
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  106 (179)
T 3f6q_A           33 NQGDDHGFSPLHWACREGRSAVVEMLIMRG------ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN  106 (179)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            334455678999999999999999999997      9999999999999999999999999999999998873       


Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      ||||+|+..++.+++++|+++|+++                                +.+|..|.|||++|+..++.+++
T Consensus       107 t~L~~A~~~~~~~~v~~Ll~~ga~~--------------------------------~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A          107 VPLHYACFWGQDQVAEDLVANGALV--------------------------------SICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCS--------------------------------SBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCc--------------------------------chhccCCCCcHHHHHHHHHHHHH
Confidence            6888888888888888888876443                                46677777888877777777777


Q ss_pred             HHHHhCCCCc
Q psy11714        182 NILLEYNIQV  191 (272)
Q Consensus       182 ~~Ll~~g~~~  191 (272)
                      ++|+++|+++
T Consensus       155 ~~L~~~g~~~  164 (179)
T 3f6q_A          155 ERAEKMGQNL  164 (179)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHhhcCc
Confidence            7777777665

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=4.4e-29  Score=215.36  Aligned_cols=196  Identities=15%  Similarity=0.113  Sum_probs=148.0

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-----h----hhHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQ-----V----KDALL  105 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~----~t~l~  105 (272)
                      ..++||.|+..|+.+++++|++.|..   ....+..+..|.||||+|+..|+.++|++|+++|++     +    .||||
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~---~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh  168 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTS---DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR  168 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--C---CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCc---HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHH
Confidence            34789999999999999999988610   001223344677899999999999999999999975     2    37999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHH-HcCCHHHHHHH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAI-ENENIELINIL  184 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~-~~g~~~~~~~L  184 (272)
                      +|+..|+.+++++|+++|++++                              .+.+|..|.||||+|+ ..|+.+++++|
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~------------------------------~~~~d~~g~TpL~~Aa~~~G~~eiv~~L  218 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEA------------------------------TAMIQAENYYAFRWAAVGRGHHNVINFL  218 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGH------------------------------HHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCccc------------------------------hhccCCCCCCHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999887654                              0014556789999999 99999999999


Q ss_pred             HhCCCCchhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhh-----------------------------------
Q psy11714        185 LEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV-----------------------------------  229 (272)
Q Consensus       185 l~~g~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~-----------------------------------  229 (272)
                      ++.|++..|||++|+..|+.+++++|+++|++++....++.+++.                                   
T Consensus       219 l~~ga~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~  298 (376)
T 2aja_A          219 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR  298 (376)
T ss_dssp             TTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred             HhCCCccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHH
Confidence            998888889999999999999999999998877432221211110                                   


Q ss_pred             ---h--------cCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy11714        230 ---D--------RSSSTFTPDITPLILAAHMNNYEILKILLDRGA  263 (272)
Q Consensus       230 ---~--------~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga  263 (272)
                         .        ........+.||||+|+..|+.+++++|+++|+
T Consensus       299 ~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          299 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             HHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChH
Confidence               0        011233456799999999999999999999865

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=5.7e-26  Score=172.21  Aligned_cols=146  Identities=19%  Similarity=0.298  Sum_probs=105.4

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~  108 (272)
                      .++|+.|+..|+.+.++.|++..     +.+++..+..|.||||+ +..|+.+++++|+++|++++       ||||+|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRE-----LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-----CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhh-----CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            46789999999999999999884     37888888889899888 88888888888888777663       4555555


Q ss_pred             HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy11714        109 KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYN  188 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g  188 (272)
                      ..|+.+++++|+++|+++                                +.+|..|.|                     
T Consensus        77 ~~~~~~~v~~Ll~~g~~~--------------------------------~~~~~~g~t---------------------  103 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADV--------------------------------NVPDGTGAL---------------------  103 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS--------------------------------CCCCTTSCC---------------------
T ss_pred             HcCcHHHHHHHHHcCCCC--------------------------------CCcCCCCCc---------------------
Confidence            555555555555544332                                234444455                     


Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        189 IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       189 ~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                           |||+|+..|+.+++++|+++ ++++               .++..|.||||+|+..|+.+++++|+++
T Consensus       104 -----~L~~A~~~~~~~~v~~Ll~~-~~~~---------------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          104 -----PIHLAVQEGHTAVVSFLAAE-SDLH---------------RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -----HHHHHHHHTCHHHHHHHHTT-SCTT---------------CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -----HHHHHHHhChHHHHHHHHhc-cCCC---------------CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence                 45555555566666666666 6666               6778899999999999999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=7e-26  Score=171.32  Aligned_cols=115  Identities=21%  Similarity=0.297  Sum_probs=105.3

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l  104 (272)
                      .....++|+.|+..|+.++++.|++.|      ++++.++..|.||||+|+..|+.+++++|+++|++++       |||
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  104 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAG------VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL  104 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC------CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            344678999999999999999999987      9999999999999999999999999999999999984       799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL  184 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~L  184 (272)
                      |+|+..++.+++++|+++|+++                                +.+|..|.||||+|+..|+.+++++|
T Consensus       105 ~~A~~~~~~~~v~~Ll~~ga~~--------------------------------~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          105 HWATEHNHQEVVELLIKYGADV--------------------------------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCc--------------------------------cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999987554                                47788999999999999999999987

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=8.3e-27  Score=191.48  Aligned_cols=160  Identities=20%  Similarity=0.171  Sum_probs=136.0

Q ss_pred             CCCCCcHHHHHHHcCCHHH----HHHHHHCCCChh-----------hHHHHHH---HcCcHHHHHHHHccccccccCCCC
Q psy11714         71 DPLNRSSLIAAIENENIEL----INILLEYNIQVK-----------DALLHAI---KEEYVEAVEILLEWEEKIHVHGQP  132 (272)
Q Consensus        71 ~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~-----------t~l~~A~---~~~~~~~~~~Ll~~g~~~~~~~~~  132 (272)
                      +.+++|+||.|+..|+.+.    +++|++.|++++           ||||+|+   ..|+.+++++|+++|++....   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~---   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM---   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence            4678999999999999995    555555888774           7999999   679999999999998775410   


Q ss_pred             ccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---------------------
Q psy11714        133 YVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV---------------------  191 (272)
Q Consensus       133 ~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~---------------------  191 (272)
                              ..+          ...+++..|..|.||||+|+..|+.+++++|+++|+++                     
T Consensus        79 --------~~~----------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g  140 (260)
T 3jxi_A           79 --------REF----------INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFG  140 (260)
T ss_dssp             --------HHH----------HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSC
T ss_pred             --------Hhh----------hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCC
Confidence                    000          01345666779999999999999999999999999886                     


Q ss_pred             hhHHHHHHHcCCHHHHHHHHh---cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC---------HHHHHHHH
Q psy11714        192 KDALLHAIKEEYVEAVEILLE---WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN---------YEILKILL  259 (272)
Q Consensus       192 ~t~l~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~---------~~iv~~Ll  259 (272)
                      .||||+|+..|+.+++++|++   +|++++               .+|..|.||||+|+..++         .+++++|+
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~---------------~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll  205 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQADLR---------------RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL  205 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTT---------------CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCCc---------------ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            289999999999999999999   999999               788999999999998887         79999999


Q ss_pred             HCCCCCC
Q psy11714        260 DRGATLP  266 (272)
Q Consensus       260 ~~ga~~~  266 (272)
                      ++|++++
T Consensus       206 ~~ga~~~  212 (260)
T 3jxi_A          206 IKCAKLF  212 (260)
T ss_dssp             HHHHHHC
T ss_pred             HhCcccc
Confidence            9999983

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=1.6e-26  Score=196.45  Aligned_cols=180  Identities=14%  Similarity=0.164  Sum_probs=135.9

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHHCC-CCh-------
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN---IELINILLEYN-IQV-------  100 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g-~~~-------  100 (272)
                      ...+.++||+|+..|+.++++.||+.|      +++|.+|..|.||||+|+..|+   .++++.|++++ +++       
T Consensus       128 d~~g~TpLh~Aa~~g~~~~v~~Ll~~G------ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g  201 (327)
T 1sw6_A          128 DEHGNTPLHWLTSIANLELVKHLVKHG------SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  201 (327)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCC
Confidence            355678899999999999999999997      9999999999999999999998   67788888876 445       


Q ss_pred             hhHHHHHHH----cCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcC
Q psy11714        101 KDALLHAIK----EEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE  176 (272)
Q Consensus       101 ~t~l~~A~~----~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g  176 (272)
                      .||||+|+.    .++.+++++|++.++.+...       ..+..     +.......+.+++.++..|.||||+|+.  
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~-------~~~~~-----i~~~~~~~g~~~~~~~~~g~t~L~~a~~--  267 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVK-------KQNRP-----IQSGTNEKESKPNDKNGERKDSILENLD--  267 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-------GGGCC-----EEEC----------------CHHHHHCS--
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHHHHHHHhc-------ccchH-----HHhhhhcccCCcccccccCCChhHHHHH--
Confidence            489999999    89999999999987544310       00000     0001122357888999999999999985  


Q ss_pred             CHHHHHHHHhCCCCc-----hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcC
Q psy11714        177 NIELINILLEYNIQV-----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN  250 (272)
Q Consensus       177 ~~~~~~~Ll~~g~~~-----~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  250 (272)
                          +++|++++.+.     +||||+|+..|+.+++++|+++|++++               .+|..|.||||+|+++|
T Consensus       268 ----~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~---------------~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 ----LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF---------------IANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ----HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT---------------CCCTTSCCGGGGTCC--
T ss_pred             ----HHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc---------------ccCCCCCCHHHHHHhcC
Confidence                89999887665     699999999999999999999999999               78999999999998764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.9e-29  Score=202.87  Aligned_cols=172  Identities=15%  Similarity=0.074  Sum_probs=142.2

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      ...++|+.|+..|+.++++.|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++       ||||+
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~   93 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEM------NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC   93 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHS------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            3456799999999999999999987      8999999999999999999999999999999999884       79999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCC-CCCCCHHHHH--HHcCCHHHHHH
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD-PLNRSSLIAA--IENENIELINI  183 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d-~~~~t~L~~a--~~~g~~~~~~~  183 (272)
                      |+..|+.+++++|+++|++++                                .++ ..|.||||+|  +..|+.+++++
T Consensus        94 A~~~g~~~~v~~Ll~~ga~~~--------------------------------~~~~~~g~tpL~~A~a~~~~~~~~v~~  141 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAAIF--------------------------------ATTLSDGATAFEKCDPYREGYADCATY  141 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTT--------------------------------CCCSSTTCCTGGGCCTTSTTHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcc--------------------------------cccCCCCCCHHHHHHHHhcChHHHHHH
Confidence            999999999999999886654                                444 5889999999  88999999999


Q ss_pred             HHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy11714        184 LLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILK  256 (272)
Q Consensus       184 Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~  256 (272)
                      |+++|+++       .++++.++...   ..++|++.|++++.             +.+|..|.||||+|+..|+.++|+
T Consensus       142 Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~-------------~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          142 LADVEQSMGLMNSGAVYALWDYSAEF---GDELSFREGESVTV-------------LRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             HHHHHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTTCEEEE-------------EESSCTTCSSEEEEEETTEEEEEE
T ss_pred             HHHcCCCcccccCCchHHHHHHhhcc---ccccCccccccccc-------------cccCCCcccHHHHHHHcCCcceee
Confidence            99998887       25555433333   22567788887431             167889999999999999998887


Q ss_pred             HHH
Q psy11714        257 ILL  259 (272)
Q Consensus       257 ~Ll  259 (272)
                      .++
T Consensus       206 ~~~  208 (229)
T 2vge_A          206 RNY  208 (229)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.5e-25  Score=166.16  Aligned_cols=127  Identities=16%  Similarity=0.196  Sum_probs=101.0

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCcccc
Q psy11714         64 VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSE  136 (272)
Q Consensus        64 ~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  136 (272)
                      +.+++..+..|.||||+|+..|+.+++++|+++|++++       ||||+|+. ++.+++++|+++|++++         
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~---------   71 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN---------   71 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS---------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC---------
Confidence            47889999999999999999999999999999988873       67888877 88888888887765443         


Q ss_pred             CCcccHHHHHHhcCCCCccccccCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCchhHHHHHHHcCCHHHHHHHHhcCc
Q psy11714        137 NKGRTIFMMLDELKDQPEVFNINCVDPL-NRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEE  215 (272)
Q Consensus       137 ~~~~t~l~~~~~~~~~~~~~~~~~~d~~-~~t~L~~a~~~g~~~~~~~Ll~~g~~~~t~l~~A~~~~~~~~~~~Ll~~g~  215 (272)
                                             .+|.. |.||||+|+..|                          +.+++++|+++|+
T Consensus        72 -----------------------~~~~~~g~t~L~~A~~~~--------------------------~~~~v~~Ll~~ga  102 (136)
T 1d9s_A           72 -----------------------CADPATLTRPVHDAAREG--------------------------FLDTLVVLHRAGA  102 (136)
T ss_dssp             -----------------------CCBTTTTBCHHHHHHHHT--------------------------CHHHHHHHHHTCC
T ss_pred             -----------------------CcCCCCCCCHHHHHHHcC--------------------------CHHHHHHHHHcCC
Confidence                                   55555 666666666555                          5555556666666


Q ss_pred             cCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy11714        216 KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT  264 (272)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~  264 (272)
                      +++               .++..|.||||+|+..++.+++++|+++|||
T Consensus       103 ~~~---------------~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          103 RLD---------------VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CCC---------------CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCC---------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            666               6678899999999999999999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=1.9e-26  Score=187.42  Aligned_cols=181  Identities=15%  Similarity=0.137  Sum_probs=123.5

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHA  107 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A  107 (272)
                      ..++|+.|+..|+.+.++.|++.|      ++++.. ..|.||||.|+..|+.+++++|+++|++++       ||||+|
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g------~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHG------MRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA   77 (239)
T ss_dssp             ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH
T ss_pred             ccccCchhhhhhhHHHHHHHhccC------CCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            567799999999999999999997      888754 788999999999999999999999999884       899999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY  187 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~  187 (272)
                      +..|+.+++++|+++|++                                ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~--------------------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  125 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVN--------------------------------VNAADSDGWTPLHCAASCNNVQVCKFLVES  125 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCC--------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCC--------------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999998755                                457888999999999999999999999999


Q ss_pred             CCCc--------hhHHHHH--HHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy11714        188 NIQV--------KDALLHA--IKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKI  257 (272)
Q Consensus       188 g~~~--------~t~l~~A--~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~  257 (272)
                      |+++        .||||+|  +..|+.+++++|+++|++++.......      .-..+..+.+++++++..|.  ++++
T Consensus       126 ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~------~al~d~~~~~~~eLa~~~G~--~i~v  197 (239)
T 1ycs_B          126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI------YALWDYEPQNDDELPMKEGD--CMTI  197 (239)
T ss_dssp             TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEE------EESSCBCCSSTTBCCBCSSC--EEEE
T ss_pred             CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceE------EEEeccCCCCCCcccccCCC--EEEE
Confidence            9998        2999999  788999999999999999874211110      11235667888888777664  4444


Q ss_pred             HHHCC
Q psy11714        258 LLDRG  262 (272)
Q Consensus       258 Ll~~g  262 (272)
                      |.+.+
T Consensus       198 l~~~~  202 (239)
T 1ycs_B          198 IHRED  202 (239)
T ss_dssp             CCCCT
T ss_pred             EEecC
Confidence            44443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1e-25  Score=176.09  Aligned_cols=158  Identities=13%  Similarity=0.116  Sum_probs=113.2

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVD-PLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYV  113 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~  113 (272)
                      ..+.|+.|+..|+.+.++.++..+        ++.++ ..|+||||+|+..++.+.                      +.
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~--------~~~~~~~~g~T~Lh~A~~~~~~~~----------------------~~   55 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG--------YEDKESVLKSNILYDVLRNNNDEA----------------------RY   55 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS--------SSCHHHHHTTTHHHHHTTCSCHHH----------------------HH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC--------cccccccCCCCHHHHHHHcCCcch----------------------HH
Confidence            345566677777777766666554        22333 456666666666554321                      13


Q ss_pred             HHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCC------HHHHHHHHhC
Q psy11714        114 EAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN------IELINILLEY  187 (272)
Q Consensus       114 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~------~~~~~~Ll~~  187 (272)
                      +++++|+++|+++                                +.+|..|+||||+|+..|+      .+++++|+++
T Consensus        56 ~iv~~Ll~~Gadv--------------------------------n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~  103 (186)
T 3t8k_A           56 KISMFLINKGADI--------------------------------KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK  103 (186)
T ss_dssp             HHHHHHHHTTCCS--------------------------------SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCC--------------------------------CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC
Confidence            4666666665443                                3566777777777777765      5678888888


Q ss_pred             CCCc-------h-hHHHHHHHc-----CCHHHHHHHHh-cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        188 NIQV-------K-DALLHAIKE-----EYVEAVEILLE-WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       188 g~~~-------~-t~l~~A~~~-----~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      |+++       . ||||+|+..     +..+++++|++ +|++++               .+|..|.||||+|+..++.+
T Consensus       104 Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~---------------~~d~~G~TpL~~A~~~~~~~  168 (186)
T 3t8k_A          104 GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL---------------IKDKWGLTALEFVKRCQKPI  168 (186)
T ss_dssp             TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT---------------CCCTTSCCHHHHHHTTTCHH
T ss_pred             CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc---------------ccCCCCCCHHHHHHHcCCHH
Confidence            8877       4 788888773     34578999999 999999               88999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCC
Q psy11714        254 ILKILLDRGATLPMPH  269 (272)
Q Consensus       254 iv~~Ll~~ga~~~~~~  269 (272)
                      +|++|.+...+++.++
T Consensus       169 ~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          169 ALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999998877766664

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=1.2e-24  Score=180.62  Aligned_cols=148  Identities=20%  Similarity=0.279  Sum_probs=133.9

Q ss_pred             hccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHH-----HcCCHHHHHHHHHCCCCh----
Q psy11714         30 VALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAI-----ENENIELINILLEYNIQV----  100 (272)
Q Consensus        30 ~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~----  100 (272)
                      .....+.++||+|+..|+.++++.|++.|     ..+++..+..|.||||+|+     ..++.+++++|++.|.++    
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~  180 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSG-----VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS  180 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTS-----CCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC
Confidence            33456778899999999999999999998     2499999999999999999     568899999999999776    


Q ss_pred             ---hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCC
Q psy11714        101 ---KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN  177 (272)
Q Consensus       101 ---~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~  177 (272)
                         .||||+|+..|+.+++++|+++|+++                                +.+|..|.||||+|+..|+
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~--------------------------------n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLACEADV--------------------------------NVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCC--------------------------------CCCCCCCCCHHHHHHHCCC
Confidence               38999999999999999999987654                                4778899999999999999


Q ss_pred             HHHHHHHHh-CCCCc-------hhHHHHHHHcCCHHHHHHHHhcC
Q psy11714        178 IELINILLE-YNIQV-------KDALLHAIKEEYVEAVEILLEWE  214 (272)
Q Consensus       178 ~~~~~~Ll~-~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g  214 (272)
                      .+++++|++ .|+++       .|||++|+..|+.+++++|++++
T Consensus       229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999 89988       59999999999999999999875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.1e-25  Score=168.42  Aligned_cols=97  Identities=11%  Similarity=0.159  Sum_probs=77.1

Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hh-HHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhh
Q psy11714        159 NCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KD-ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD  230 (272)
Q Consensus       159 ~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t-~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  230 (272)
                      +.+|..|.||||+|+ .|+.+++++|+++|+++       .| |||+|+..++.+++++|+++|++++            
T Consensus        39 ~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~------------  105 (156)
T 1bi7_B           39 NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD------------  105 (156)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS------------
T ss_pred             CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc------------
Confidence            355677888888875 88888999999888887       35 9999999999999999999999998            


Q ss_pred             cCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       231 ~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                         .++..|.||||+|+..++.+++++|+++|++++.++..
T Consensus       106 ---~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  143 (156)
T 1bi7_B          106 ---VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA  143 (156)
T ss_dssp             ---CCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred             ---ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcC
Confidence               77888999999999999999999999999999888754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=6.9e-24  Score=157.20  Aligned_cols=115  Identities=21%  Similarity=0.235  Sum_probs=103.7

Q ss_pred             hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      .||||+|+..|+.+++++|+++|++                                ++.+|..|.||||+|+..|+.++
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~   62 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGAD--------------------------------VNAKDEYGLTPLYLATAHGHLEI   62 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCC--------------------------------TTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCC--------------------------------CCCcCCCCCCHHHHHHHcCCHHH
Confidence            4788888888888888888887654                                44677889999999999999999


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      +++|+++|+++       .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..++.+
T Consensus        63 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------~~~~~g~tpl~~A~~~~~~~  127 (136)
T 2jab_A           63 VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN---------------AQDKFGKTAFDISIGNGNED  127 (136)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc---------------CcCCCCCCHHHHHHHCCCHH
Confidence            99999999887       599999999999999999999999998               78889999999999999999


Q ss_pred             HHHHHHHCC
Q psy11714        254 ILKILLDRG  262 (272)
Q Consensus       254 iv~~Ll~~g  262 (272)
                      ++++|+++|
T Consensus       128 ~~~~Ll~~G  136 (136)
T 2jab_A          128 LAEILQKLN  136 (136)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHcC
Confidence            999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.1e-23  Score=153.40  Aligned_cols=116  Identities=32%  Similarity=0.428  Sum_probs=101.2

Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      ||||+|+..++.+++++|+++|++                                ++..+..|.||||+|+..|+.+++
T Consensus         4 t~L~~A~~~~~~~~v~~Ll~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~~   51 (126)
T 1n0r_A            4 TPLHLAARNGHLEVVKLLLEAGAD--------------------------------VNAKDKNGRTPLHLAARNGHLEVV   51 (126)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC--------------------------------TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             cHHHHHHHcCcHHHHHHHHHcCCC--------------------------------CCCcCCCCCcHHHHHHHcCcHHHH
Confidence            567777777777777777776544                                335677899999999999999999


Q ss_pred             HHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHH
Q psy11714        182 NILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEI  254 (272)
Q Consensus       182 ~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~i  254 (272)
                      ++|+++|+++       .||||+|+..++.+++++|+++|++++               .++..|.|||++|+..++.++
T Consensus        52 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~---------------~~~~~g~t~l~~A~~~~~~~~  116 (126)
T 1n0r_A           52 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---------------AKDKNGRTPLHLAARNGHLEV  116 (126)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc---------------ccCCCCCCHHHHHHHcCcHHH
Confidence            9999999887       589999999999999999999999998               778899999999999999999


Q ss_pred             HHHHHHCCCC
Q psy11714        255 LKILLDRGAT  264 (272)
Q Consensus       255 v~~Ll~~ga~  264 (272)
                      +++|+++|||
T Consensus       117 ~~~Ll~~Gad  126 (126)
T 1n0r_A          117 VKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999996

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=7.3e-26  Score=195.23  Aligned_cols=165  Identities=12%  Similarity=-0.005  Sum_probs=136.2

Q ss_pred             HHHHHHH-cCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC------Ch----hhHHHH
Q psy11714         38 RFLLVAE-RGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI------QV----KDALLH  106 (272)
Q Consensus        38 ~l~~a~~-~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~----~t~l~~  106 (272)
                      .++++.. .++.+.++++++.+      .       .+.||||+|+..|+.++|++|+++|+      ++    .||||+
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g------~-------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~  134 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKG------I-------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL  134 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHT------C-------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcC------C-------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHH
Confidence            4555555 57888888888876      3       34599999999999999999999998      43    379999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE  186 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~  186 (272)
                      |+..|+.+++++|+++|++++.                           .+++..+   .||||+|+..|+.+++++|++
T Consensus       135 Aa~~G~~eiv~~Ll~~gad~~~---------------------------~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~  184 (376)
T 2aja_A          135 AAENGHLHVLNRLCELAPTEIM---------------------------AMIQAEN---YHAFRLAAENGHLHVLNRLCE  184 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHH---------------------------HHHSHHH---HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCccc---------------------------cccCCCC---CCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999865320                           1122222   899999999999999999999


Q ss_pred             CCCCc---------hhHHHHHH-HcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy11714        187 YNIQV---------KDALLHAI-KEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILK  256 (272)
Q Consensus       187 ~g~~~---------~t~l~~A~-~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~  256 (272)
                      +|+++         .||||+|+ ..|+.+++++|+++|++                      |.||||+|+.+|+.++++
T Consensus       185 ~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~----------------------~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM----------------------LAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----------------------HHHHHHCTTTTTTTTHHH
T ss_pred             cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----------------------cchHHHHHHHCCCHHHHH
Confidence            99993         59999999 99999999999997732                      689999999999999999


Q ss_pred             HHHHCCCCCCC
Q psy11714        257 ILLDRGATLPM  267 (272)
Q Consensus       257 ~Ll~~ga~~~~  267 (272)
                      +|+++|++++.
T Consensus       243 lL~~~ga~~~~  253 (376)
T 2aja_A          243 FIARHVNRLKE  253 (376)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHhcCccccc
Confidence            99999987653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=6.6e-25  Score=177.24  Aligned_cols=164  Identities=14%  Similarity=0.101  Sum_probs=119.5

Q ss_pred             HHHHHHccCCCCCCCCcccC---CCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHH
Q psy11714         51 VRKMLDELKDQPEVFNINCV---DPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILL  120 (272)
Q Consensus        51 ~~~ll~~~~~~~~~~~~n~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll  120 (272)
                      ++.||+++      .+++..   +.+|.||||+|+..|+.+++++|+++|++++       ||||+|+..|+.+++++|+
T Consensus         1 v~~ll~~~------~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A            1 MRSVLRKA------GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             ---------------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CeehhccC------CCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            35667776      555444   3455678888999999999999998888886       6888888888888888888


Q ss_pred             ccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--------h
Q psy11714        121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV--------K  192 (272)
Q Consensus       121 ~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~--------~  192 (272)
                      ++|+++                                +.+|..|.||||+|+..|+.+++++|+++|+++        .
T Consensus        75 ~~ga~~--------------------------------n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~  122 (229)
T 2vge_A           75 TAGANV--------------------------------NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA  122 (229)
T ss_dssp             HTTCCT--------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTC
T ss_pred             HCCCCC--------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC
Confidence            876544                                466778888888888888888888888888877        3


Q ss_pred             hHHHHH--HHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCC
Q psy11714        193 DALLHA--IKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT--LPMP  268 (272)
Q Consensus       193 t~l~~A--~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~--~~~~  268 (272)
                      ||||+|  +..++.+++++|+++|++++               ..+..|.||++.++...   .+++|+++|++  ++.+
T Consensus       123 tpL~~A~a~~~~~~~~v~~Ll~~ga~~~---------------~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~  184 (229)
T 2vge_A          123 TAFEKCDPYREGYADCATYLADVEQSMG---------------LMNSGAVYALWDYSAEF---GDELSFREGESVTVLRR  184 (229)
T ss_dssp             CTGGGCCTTSTTHHHHHHHHHHHHHHTT---------------TSGGGEEEESSCBCCSS---TTBCCBCTTCEEEEEES
T ss_pred             CHHHHHHHHhcChHHHHHHHHHcCCCcc---------------cccCCchHHHHHHhhcc---ccccCcccccccccccc
Confidence            788888  88888888888888888887               56677788887554433   33677788887  4555


Q ss_pred             CC
Q psy11714        269 HD  270 (272)
Q Consensus       269 ~~  270 (272)
                      |.
T Consensus       185 d~  186 (229)
T 2vge_A          185 DG  186 (229)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=5.1e-23  Score=157.37  Aligned_cols=125  Identities=26%  Similarity=0.248  Sum_probs=114.0

Q ss_pred             hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      .|||+.|+..|+.++++.|++.+.                               .+++..+..|.||||+|+..|+.++
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~   57 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQS-------------------------------VNCRDIEGRQSTPLHFAAGYNRVSV   57 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTT-------------------------------TTCCCTTTTCCCHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCC-------------------------------CCccccccCCCCHHHHHHHcChHHH
Confidence            578999999999999999988431                               3456778889999999999999999


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      +++|+++|+++       .||||+|+..++.+++++|+++|++++               .++..|.||||+|+..++.+
T Consensus        58 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------~~~~~g~t~L~~A~~~~~~~  122 (165)
T 3twr_A           58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN---------------VADLWKFTPLHEAAAKGKYE  122 (165)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC---------------CcCCCCCCHHHHHHHcCCHH
Confidence            99999999988       499999999999999999999999998               77889999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCC
Q psy11714        254 ILKILLDRGATLPMPHDV  271 (272)
Q Consensus       254 iv~~Ll~~ga~~~~~~~~  271 (272)
                      ++++|+++|++++..+..
T Consensus       123 ~v~~Ll~~ga~~~~~~~~  140 (165)
T 3twr_A          123 ICKLLLQHGADPTKKNRD  140 (165)
T ss_dssp             HHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHcCCCCcccCCC
Confidence            999999999999998865

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=2.7e-24  Score=163.19  Aligned_cols=129  Identities=14%  Similarity=0.091  Sum_probs=77.6

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCccc
Q psy11714         69 CVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRT  141 (272)
Q Consensus        69 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t  141 (272)
                      ..+..|.||||+|+..|+.+++++|+++|++++       ||||+|+ .++.+++++|+++|+++               
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~---------------   70 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP---------------   70 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC---------------
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC---------------
Confidence            345566677777777777777777777766663       5677663 66777777777765443               


Q ss_pred             HHHHHHhcCCCCccccccCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhc
Q psy11714        142 IFMMLDELKDQPEVFNINCVDPLNRS-SLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEW  213 (272)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~~d~~~~t-~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~  213 (272)
                                       +.+|..|.| |||+|+..|+.+++++|+++|+++       .||||+|+..++.+++++|+++
T Consensus        71 -----------------~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~  133 (156)
T 1bi7_B           71 -----------------NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  133 (156)
T ss_dssp             -----------------CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             -----------------CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc
Confidence                             355666776 777777777777777777777766       3777777777778888888888


Q ss_pred             CccCCCCCCcchhhhhhcCCCCCCCCCcHHHH
Q psy11714        214 EEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL  245 (272)
Q Consensus       214 g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~  245 (272)
                      |++++               .++..|.||.+-
T Consensus       134 ga~~~---------------~~~~~g~t~~~~  150 (156)
T 1bi7_B          134 AGGTR---------------GSNHARIDAAEG  150 (156)
T ss_dssp             C-------------------------------
T ss_pred             CCCCC---------------ccCcCcCccccc
Confidence            87777               566667776653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=4.9e-23  Score=152.58  Aligned_cols=119  Identities=24%  Similarity=0.325  Sum_probs=109.2

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l  104 (272)
                      .....++|++|+..|+.++++.|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++       |||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L   84 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANG------ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL   84 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcC------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Confidence            345678899999999999999999997      9999999999999999999999999999999999984       799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL  184 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~L  184 (272)
                      |+|+..++.+++++|+++|++                                ++.+|..|.||||+|+..|+.+++++|
T Consensus        85 ~~A~~~~~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~tpl~~A~~~~~~~~~~~L  132 (136)
T 2jab_A           85 HLAAFIGHLEIAEVLLKHGAD--------------------------------VNAQDKFGKTAFDISIGNGNEDLAEIL  132 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC--------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC--------------------------------CcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            999999999999999998755                                447788999999999999999999999


Q ss_pred             HhCC
Q psy11714        185 LEYN  188 (272)
Q Consensus       185 l~~g  188 (272)
                      +++|
T Consensus       133 l~~G  136 (136)
T 2jab_A          133 QKLN  136 (136)
T ss_dssp             HHC-
T ss_pred             HHcC
Confidence            9986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.1e-23  Score=156.03  Aligned_cols=120  Identities=16%  Similarity=0.232  Sum_probs=110.6

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh--------hhH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV--------KDA  103 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~t~  103 (272)
                      .....++|+.|+..|+.+++++|++.+      ++++.+|..|.||||+|+. ++.+++++|+++|+++        .||
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEAG------ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcC------CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            345677899999999999999999997      9999999999999999999 9999999999999887        379


Q ss_pred             HHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11714        104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI  183 (272)
Q Consensus       104 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~  183 (272)
                      ||+|+..++.+++++|+++|+++                                +.+|..|.||||+|+..|+.+++++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~--------------------------------~~~d~~g~tpl~~A~~~~~~~~~~~  129 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARL--------------------------------DVCDAWGRLPVDLAEEQGHRDIARY  129 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCC--------------------------------CCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC--------------------------------CccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999987554                                4778899999999999999999999


Q ss_pred             HHhCCCC
Q psy11714        184 LLEYNIQ  190 (272)
Q Consensus       184 Ll~~g~~  190 (272)
                      |+++|+|
T Consensus       130 Ll~~Gad  136 (136)
T 1d9s_A          130 LHAATGD  136 (136)
T ss_dssp             HHHHHCC
T ss_pred             HHHcCCC
Confidence            9999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.8e-22  Score=146.89  Aligned_cols=118  Identities=28%  Similarity=0.386  Sum_probs=107.5

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHA  107 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A  107 (272)
                      +.++|+.|+..|+.+++++|++.+      .+++..+..|.||||+|+..++.+++++|+++|++++       ||||+|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAG------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcC------CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence            356799999999999999999997      8999999999999999999999999999999998883       799999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY  187 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~  187 (272)
                      +..++.+++++|+++|++                                ++.+|..|.|||++|+..|+.+++++|+++
T Consensus        76 ~~~~~~~~~~~Ll~~g~~--------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           76 ARNGHLEVVKLLLEAGAD--------------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             HHTTCHHHHHHHHHTTCC--------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCC--------------------------------CcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            999999999999998755                                447788899999999999999999999999


Q ss_pred             CCC
Q psy11714        188 NIQ  190 (272)
Q Consensus       188 g~~  190 (272)
                      |+|
T Consensus       124 Gad  126 (126)
T 1n0r_A          124 GAY  126 (126)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            986

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=6.5e-24  Score=165.86  Aligned_cols=62  Identities=11%  Similarity=0.105  Sum_probs=49.2

Q ss_pred             hhhhHHHHHHHcCCH----HHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCH------HHHHHHHHCCCChh
Q psy11714         34 PQEKRFLLVAERGDC----ATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI------ELINILLEYNIQVK  101 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~------~~v~~Ll~~g~~~~  101 (272)
                      .+.++||+|+..|+.    ++++.||+.|      +++|.+|..|+||||+|+..++.      +++++|+++|++++
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G------advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin  108 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLINKG------ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT  108 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHHTT------CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHHCC------CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence            357889999999975    4899999997      99999999999999999998874      34444444444444

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=7.4e-22  Score=149.40  Aligned_cols=123  Identities=15%  Similarity=0.209  Sum_probs=112.6

Q ss_pred             hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      .|||+.|+..|+.+++++|+++ ..                              .+++..|..|.||||+ +..|+.++
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~-~~------------------------------~~~~~~~~~g~t~L~~-~~~~~~~~   50 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHR-EL------------------------------VHPDALNRFGKTALQV-MMFGSTAI   50 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TC------------------------------CCTTCCCTTSCCHHHH-SCTTCHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHh-hC------------------------------cCccccCCCCCcHHHH-HHcCCHHH
Confidence            4789999999999999999986 21                              3466788899999999 99999999


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      +++|+++|+++       .||||+|+..|+.+++++|+++|++++               .++..|.||||+|+..|+.+
T Consensus        51 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------------~~~~~g~t~L~~A~~~~~~~  115 (156)
T 1bd8_A           51 ALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---------------VPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC---------------CCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC---------------CcCCCCCcHHHHHHHhChHH
Confidence            99999999988       599999999999999999999999998               77889999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCC
Q psy11714        254 ILKILLDRGATLPMPHDV  271 (272)
Q Consensus       254 iv~~Ll~~ga~~~~~~~~  271 (272)
                      ++++|+++ ++++.++..
T Consensus       116 ~v~~Ll~~-~~~~~~~~~  132 (156)
T 1bd8_A          116 VVSFLAAE-SDLHRRDAR  132 (156)
T ss_dssp             HHHHHHTT-SCTTCCCTT
T ss_pred             HHHHHHhc-cCCCCcCCC
Confidence            99999999 999998864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=8.6e-23  Score=151.37  Aligned_cols=127  Identities=17%  Similarity=0.194  Sum_probs=88.4

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHH
Q psy11714         65 FNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFM  144 (272)
Q Consensus        65 ~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~  144 (272)
                      +++ .+|..|.||||+|+..|+.+++++|+++|+++                                            
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--------------------------------------------   36 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP--------------------------------------------   36 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS--------------------------------------------
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------------------------------------------
Confidence            455 56777888888888888877777777766654                                            


Q ss_pred             HHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccC
Q psy11714        145 MLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKI  217 (272)
Q Consensus       145 ~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~  217 (272)
                                    +.+|..|.||||+|+..|+.+++++|+++|+++       .||||+|+..++.+++++|+++|+++
T Consensus        37 --------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (137)
T 3c5r_A           37 --------------NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR  102 (137)
T ss_dssp             --------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             --------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                          233455666666666666666666666666655       36777777777788888888888888


Q ss_pred             CCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy11714        218 HVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL  265 (272)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~  265 (272)
                      +               .+|..|.|||++|+..+..+++++|.+++...
T Consensus       103 ~---------------~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s~  135 (137)
T 3c5r_A          103 N---------------AVNIFGLRPVDYTDDESMKSLLLLPEKNESSS  135 (137)
T ss_dssp             T---------------CCCTTSCCGGGGCCCHHHHHHHSCC-------
T ss_pred             C---------------CCCCCCCCHHHHHhhccHHHHHhhccccccCC
Confidence            7               77889999999999999999999888877643

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=1.1e-21  Score=159.80  Aligned_cols=132  Identities=20%  Similarity=0.214  Sum_probs=104.4

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------hHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK--------DAL  104 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~l  104 (272)
                      +...++||.|+..|+.++++.|++ +      .++|.+|..|.||||+|+..|+.+++++|+++|++++        |||
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-D------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-T------CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-C------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            456788999999999999999999 6      8999999999999999999999999999999999983        799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL  184 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~L  184 (272)
                      |+|+..|+.+++++|+++|++++      .++..|.||||+|+...          ....+.|||++|+..|+.+++++|
T Consensus       116 ~~A~~~g~~~~v~~Ll~~ga~~~------~~d~~g~t~l~~A~~~~----------~~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          116 HMAAGYVRPEVVEALVELGADIE------VEDERGLTALELAREIL----------KTTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT------CCCTTCCCHHHHHHHHH----------TTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHHH----------hccCCCCHHHHHHHcChHHHHHHH
Confidence            99999999999999999988776      44555555555555421          113345555555555555555555


Q ss_pred             HhC
Q psy11714        185 LEY  187 (272)
Q Consensus       185 l~~  187 (272)
                      ++.
T Consensus       180 ~~~  182 (244)
T 3ui2_A          180 EGQ  182 (244)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.3e-22  Score=168.70  Aligned_cols=131  Identities=13%  Similarity=0.096  Sum_probs=101.7

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCccc------CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCChh----
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINC------VDPLNRSSLIAAIEN---ENIELINILLEYNIQVK----  101 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~----  101 (272)
                      ..+.|+.|+..|+.+.++.|+..+      .+++.      .+..|.||||+|+..   ++.+++++|+++|++++    
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g------~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG------QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT------CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC------CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC
Confidence            345688888888888888888876      77776      577888888888886   78888888888888873    


Q ss_pred             ---hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCH
Q psy11714        102 ---DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI  178 (272)
Q Consensus       102 ---t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~  178 (272)
                         ||||+|+..|+.+++++|+++|+++                                +.+|..|.||||+|+..|+.
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~--------------------------------~~~d~~G~TpL~~A~~~~~~  272 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALV--------------------------------GTVNEAGETALDIARKKHHK  272 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCC--------------------------------SCCCTTSCCHHHHHHHHTCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC--------------------------------CCcCCCCCCHHHHHHHcCCH
Confidence               7888888888888888888877554                                46778888888888888888


Q ss_pred             HHHHHHHhCCCCc-hhHHHHHHHcCC
Q psy11714        179 ELINILLEYNIQV-KDALLHAIKEEY  203 (272)
Q Consensus       179 ~~~~~Ll~~g~~~-~t~l~~A~~~~~  203 (272)
                      +++++|+++|++. .||||+|+..|+
T Consensus       273 ~iv~~Ll~~ga~~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          273 ECEELLEQAQAGTFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHHHHHHTTSSCCC-------
T ss_pred             HHHHHHHHhcCCCCCChhHHHHhcCC
Confidence            8888888888766 688888887765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=4.2e-21  Score=159.32  Aligned_cols=127  Identities=14%  Similarity=0.141  Sum_probs=113.9

Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHc---CCH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN---ENI  178 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~---g~~  178 (272)
                      ++|+.|+..++.+.++.+++.|++++.                          ...++..|..|.||||+|+..   |+.
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~--------------------------~~~l~~~~~~g~t~Lh~A~~~~~~~~~  185 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTE--------------------------KIPLANGHEPDETALHLAVRSVDRTSL  185 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTS--------------------------BCCCSSCSSTTCBHHHHHHHHCCTTTH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhh--------------------------hccccccccCCCCcchHHHHhcccchH
Confidence            489999999999999999998887651                          112556678899999999999   899


Q ss_pred             HHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC
Q psy11714        179 ELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN  251 (272)
Q Consensus       179 ~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  251 (272)
                      +++++|+++|+++       .||||+|+..|+.+++++|+++|++++               .+|..|.||||+|+..|+
T Consensus       186 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~---------------~~d~~g~tpL~~A~~~~~  250 (278)
T 1dcq_A          186 HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE---------------IANESGETPLDIAKRLKH  250 (278)
T ss_dssp             HHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------CccCCCCCHHHHHHHcCC
Confidence            9999999999998       599999999999999999999999999               789999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCC
Q psy11714        252 YEILKILLDRGATLPMPH  269 (272)
Q Consensus       252 ~~iv~~Ll~~ga~~~~~~  269 (272)
                      .+++++|+++|++....+
T Consensus       251 ~~~v~~Ll~~ga~~~~~~  268 (278)
T 1dcq_A          251 EHCEELLTQALSGRFNSH  268 (278)
T ss_dssp             HHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHcCCCCCCcc
Confidence            999999999999866554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.9e-21  Score=151.42  Aligned_cols=132  Identities=20%  Similarity=0.220  Sum_probs=109.2

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------hHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK--------DAL  104 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~l  104 (272)
                      ....++|+.|+..|+.+.++.|++ +      .++|.+|..|.||||+|+..|+.+++++|+++|++++        |||
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL  114 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-D------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-T------SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-c------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            456788999999999999999999 6      8999999999999999999999999999999999883        799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL  184 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~L  184 (272)
                      |+|+..++.+++++|+++|++++      .++..|.|||++|+.....          ..+.++|++|+..|..+++++|
T Consensus       115 ~~A~~~~~~~~v~~Ll~~ga~~~------~~d~~g~tpl~~A~~~~~~----------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          115 HMAAGYVRPEVVEALVELGADIE------VEDERGLTALELAREILKT----------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTT------CCCTTSCCHHHHHHHHHHT----------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHcCCCCc------CCCCCCCCHHHHHHHhccC----------cccccHHHHHHHcCHHHHHHHH
Confidence            99999999999999999998877      5666677777776653211          2345666666666666666666


Q ss_pred             HhC
Q psy11714        185 LEY  187 (272)
Q Consensus       185 l~~  187 (272)
                      .++
T Consensus       179 ~~~  181 (183)
T 3deo_A          179 EGQ  181 (183)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=5.5e-22  Score=159.05  Aligned_cols=122  Identities=18%  Similarity=0.199  Sum_probs=98.9

Q ss_pred             hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      .||||+|+..|+.+++++|+++|++                                ++.+|..|.||||+|+..|+.++
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~  121 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNRVG--------------------------------VNGLDKAGSTALYWACHGGHKDI  121 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCC--------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccCcHHHHHHHHhCCCC--------------------------------ccccCCCCCCHHHHHHHcCCHHH
Confidence            5788888888888888888887654                                44678889999999999999999


Q ss_pred             HHHHHhC-CCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCH
Q psy11714        181 INILLEY-NIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNY  252 (272)
Q Consensus       181 ~~~Ll~~-g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~  252 (272)
                      +++|++. |+++       .||||+|+..|+.+++++|+++|++++               .++..|.||||+|+..+..
T Consensus       122 v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~t~l~~A~~~~~~  186 (222)
T 3ehr_A          122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD---------------LRNIEKKLAFDMATNAACA  186 (222)
T ss_dssp             HHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC---------------CCCTTSCCHHHHCCSHHHH
T ss_pred             HHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc---------------cccCCCCCHHHHhcchhHH
Confidence            9999998 8887       599999999999999999999999999               7889999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCC
Q psy11714        253 EILKILLDRGATLPMPH  269 (272)
Q Consensus       253 ~iv~~Ll~~ga~~~~~~  269 (272)
                      ++++.|+++|++.+..+
T Consensus       187 ~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          187 SLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHC-------------
T ss_pred             HHHHHHhccchhhhccc
Confidence            99999999999987765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=1.5e-21  Score=159.03  Aligned_cols=128  Identities=19%  Similarity=0.166  Sum_probs=104.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHH
Q psy11714         72 PLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFM  144 (272)
Q Consensus        72 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~  144 (272)
                      ..|.||||+|+..|+.+++++|++ |++++       ||||+|+..|+.+++++|+++|++++                 
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-----------------  104 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----------------  104 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-----------------
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-----------------
Confidence            467889999999999999999988 87774       79999999999999999998876554                 


Q ss_pred             HHHhcCCCCccccccCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCcc
Q psy11714        145 MLDELKDQPEVFNINCVD-PLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEK  216 (272)
Q Consensus       145 ~~~~~~~~~~~~~~~~~d-~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~  216 (272)
                                     .++ ..|.||||+|+..|+.+++++|+++|+++       .||||+|+..               
T Consensus       105 ---------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~---------------  154 (244)
T 3ui2_A          105 ---------------HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI---------------  154 (244)
T ss_dssp             ---------------CCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------------
T ss_pred             ---------------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH---------------
Confidence                           555 66888999999999999999999888887       4888888752               


Q ss_pred             CCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy11714        217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT  264 (272)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~  264 (272)
                                       .....+.|||++|+..|+.+++++|++++.+
T Consensus       155 -----------------~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          155 -----------------LKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             -----------------HTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             -----------------HhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                             1123579999999999999999999987544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=3.5e-21  Score=139.99  Aligned_cols=103  Identities=19%  Similarity=0.204  Sum_probs=85.4

Q ss_pred             hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      .||||+|+..++.+++++|+++|++                                ++.+|..|.||||+|+..|+.++
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~   55 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGED--------------------------------VNRTLEGGRKPLHYAADCGQLEI   55 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCC--------------------------------TTSCCTTSSCHHHHHHHTTCHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCC--------------------------------cCccCCCCCcHHHHHHHcCCHHH
Confidence            4677888888888888888876644                                44667788888888888888899


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcC
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN  250 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  250 (272)
                      +++|+++|+++       .||||+|+..++.+++++|+++|++++               .++..|.||||+|...+
T Consensus        56 v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---------------~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           56 LEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT---------------VKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHCCCHH
T ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------CcCCCCCCHHHHhCCHH
Confidence            99888888887       489999999999999999999999988               78899999999995443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.3e-20  Score=130.03  Aligned_cols=86  Identities=33%  Similarity=0.448  Sum_probs=81.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCC
Q psy11714        164 LNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTF  236 (272)
Q Consensus       164 ~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  236 (272)
                      +|+||||+|+..|+.+++++|++.|+++       .||||+|+..++.+++++|+++|++++               .+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------~~d   65 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---------------AKD   65 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------ccC
Confidence            4889999999999999999999999988       599999999999999999999999999               788


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy11714        237 TPDITPLILAAHMNNYEILKILLDRGAT  264 (272)
Q Consensus       237 ~~g~t~l~~A~~~~~~~iv~~Ll~~ga~  264 (272)
                      ..|.||||+|+..++.+++++|+++||+
T Consensus        66 ~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           66 KNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=1.5e-20  Score=139.13  Aligned_cols=101  Identities=22%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             ccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhh
Q psy11714        156 FNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA  228 (272)
Q Consensus       156 ~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  228 (272)
                      .++ .+|..|.||||+|+..|+.+++++|++.|+++       .||||+|+..++.+++++|+++|++++          
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------   70 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN----------   70 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc----------
Confidence            455 67889999999999999999999999999987       599999999999999999999999998          


Q ss_pred             hhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        229 VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       229 ~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                           .++..|.||||+|+..++.+++++|+++|++++.+|.++
T Consensus        71 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  109 (137)
T 3c5r_A           71 -----TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG  109 (137)
T ss_dssp             -----CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             -----CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence                 778899999999999999999999999999999998653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=7.9e-21  Score=159.41  Aligned_cols=123  Identities=18%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCChh-------------hHHHHHHHc---CcHHHHHHHHccccccccCCCCccccCCc
Q psy11714         76 SSLIAAIENENIELINILLEYNIQVK-------------DALLHAIKE---EYVEAVEILLEWEEKIHVHGQPYVSENKG  139 (272)
Q Consensus        76 t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------t~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  139 (272)
                      ++|+.|+..|+.+.++.|++.|++++             ||||+|+..   ++.+++++|+++|++              
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad--------------  218 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH--------------  218 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC--------------
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC--------------
Confidence            56778888888887777777777653             578888776   677788888877654              


Q ss_pred             ccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHh
Q psy11714        140 RTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLE  212 (272)
Q Consensus       140 ~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~  212 (272)
                                        ++.+|..|.||||+|+..|+.+++++|+++|+++       .|||++|+..++.+++++|++
T Consensus       219 ------------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~  280 (301)
T 2b0o_E          219 ------------------LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ  280 (301)
T ss_dssp             ------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                              5578899999999999999999999999999998       599999999999999999999


Q ss_pred             cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC
Q psy11714        213 WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN  251 (272)
Q Consensus       213 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  251 (272)
                      +|++                     .|.||||+|+.+|+
T Consensus       281 ~ga~---------------------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          281 AQAG---------------------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHH---------------------TTSSCCC-------
T ss_pred             hcCC---------------------CCCChhHHHHhcCC
Confidence            9875                     36899999998875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=9.1e-21  Score=137.78  Aligned_cols=89  Identities=22%  Similarity=0.284  Sum_probs=81.4

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      +...++|+.|+..|+.+.++.|++.+      .+++.+|..|.||||+|+..|+.+++++|+++|++++       ||||
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKG------EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLL   78 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTT------CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcC------CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence            34567899999999999999999997      8999999999999999999999999999999999984       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccc
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIH  127 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~  127 (272)
                      +|+..++.+++++|+++|++++
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~~~  100 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGADKT  100 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999886654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.83  E-value=3.5e-20  Score=144.17  Aligned_cols=99  Identities=20%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCC----CCCcchhh
Q psy11714        160 CVDPLNRSSLIAAIENENIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHV----HGQPYSWE  227 (272)
Q Consensus       160 ~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~----~~~~~~~~  227 (272)
                      .+|..|.||||+|+..|+.+++++|+++|+++        .||||+|+..++.+++++|+++|++++.    +.+|++++
T Consensus        71 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A  150 (183)
T 3deo_A           71 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA  150 (183)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHH
Confidence            44445555555555555555555555555544        2555555555555555555555555541    01111111


Q ss_pred             hhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        228 AVDRSSSTFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       228 ~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                      ...   .....+.++|++|+..|+.+++++|.++
T Consensus       151 ~~~---~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          151 REI---LKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHH---HHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHh---ccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            111   0112345666666777889999999875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=7.9e-20  Score=151.62  Aligned_cols=124  Identities=12%  Similarity=0.103  Sum_probs=104.5

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCChh-------hHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIEN---ENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      ...|+.|+..|+.+.++.++..|........++..+..|.||||+|+..   |+.+++++|+++|++++       ||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            4568999999999999999998721111111556688899999999999   89999999999999984       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL  185 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll  185 (272)
                      +|+..|+.+++++|+++|+++                                +.+|..|.||||+|+..|+.+++++|+
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~--------------------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll  258 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASI--------------------------------EIANESGETPLDIAKRLKHEHCEELLT  258 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC--------------------------------CCccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999987654                                477889999999999999999999999


Q ss_pred             hCCCCc
Q psy11714        186 EYNIQV  191 (272)
Q Consensus       186 ~~g~~~  191 (272)
                      ++|++.
T Consensus       259 ~~ga~~  264 (278)
T 1dcq_A          259 QALSGR  264 (278)
T ss_dssp             HHHTTC
T ss_pred             HcCCCC
Confidence            988763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=1.4e-20  Score=150.75  Aligned_cols=118  Identities=19%  Similarity=0.247  Sum_probs=70.8

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCChh-------hHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-NIQVK-------DALLHA  107 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~-------t~l~~A  107 (272)
                      .++|+.|+..|+.++++.|++.|      +++|.+|..|.||||+|+..|+.+++++|+++ |++++       ||||+|
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNR------VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             ccccccccccCcHHHHHHHHhCC------CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            45677777777777777777765      66777777777777777777777777777766 65552       566666


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY  187 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~  187 (272)
                      +..|+.+++++|+++|+++                                +.+|..|.|||++|+..|+.++++.|++.
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~--------------------------------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~  195 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGART--------------------------------DLRNIEKKLAFDMATNAACASLLKKKQGT  195 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCS--------------------------------CCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred             HHcCCHHHHHHHHHcCCCC--------------------------------ccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence            6666666666666655433                                34555666666666666666666666655


Q ss_pred             CCCc
Q psy11714        188 NIQV  191 (272)
Q Consensus       188 g~~~  191 (272)
                      |++.
T Consensus       196 ~~~~  199 (222)
T 3ehr_A          196 DAVR  199 (222)
T ss_dssp             ----
T ss_pred             chhh
Confidence            5543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=1.1e-19  Score=156.24  Aligned_cols=117  Identities=18%  Similarity=0.183  Sum_probs=107.4

Q ss_pred             hhHHHHHHHc-CcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCC--CCCCCHHHHHHHcCC
Q psy11714        101 KDALLHAIKE-EYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD--PLNRSSLIAAIENEN  177 (272)
Q Consensus       101 ~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d--~~~~t~L~~a~~~g~  177 (272)
                      .|+||.|+.. ++.+++++|+++|++++                                ..+  ..|.||||+|+..|+
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn--------------------------------~~~~~~~g~TpLh~Aa~~g~  247 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVN--------------------------------WVNGGQDNATPLIQATAANS  247 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTT--------------------------------CCCTTTTCCCHHHHHHHTTC
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCC--------------------------------ccccccCCCCHHHHHHHCCC
Confidence            5799999999 99999999999887665                                445  789999999999999


Q ss_pred             HHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcC
Q psy11714        178 IELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN  250 (272)
Q Consensus       178 ~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  250 (272)
                      .+++++|+++|+++       .||||+|+..++.+++++|+++|++++               .+|..|.||||+|+..+
T Consensus       248 ~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~---------------~~d~~G~TpL~~A~~~g  312 (368)
T 3jue_A          248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG---------------ARDSEGRDPLTIAMETA  312 (368)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC---------------CcCCCCCCHHHHHHHCC
Confidence            99999999999998       599999999999999999999999999               78899999999999999


Q ss_pred             CHHHHHHHHHCCCC
Q psy11714        251 NYEILKILLDRGAT  264 (272)
Q Consensus       251 ~~~iv~~Ll~~ga~  264 (272)
                      +.+++++|++.|..
T Consensus       313 ~~~iv~lLl~~~~~  326 (368)
T 3jue_A          313 NADIVTLLRLAKMR  326 (368)
T ss_dssp             CHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999988754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=1.3e-20  Score=135.21  Aligned_cols=97  Identities=25%  Similarity=0.203  Sum_probs=91.6

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcC
Q psy11714        160 CVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRS  232 (272)
Q Consensus       160 ~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  232 (272)
                      .+|..|.||||+|+..|+.+++++|+++|+++       .||||+|+..++.+++++|+++|++++              
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--------------   69 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN--------------   69 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT--------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc--------------
Confidence            46889999999999999999999999999888       599999999999999999999999998              


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        233 SSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       233 ~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                       .++..|.||||+|+..++.+++++|+++||++|.++.+
T Consensus        70 -~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~  107 (115)
T 2l6b_A           70 -ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG  107 (115)
T ss_dssp             -CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCC
T ss_pred             -ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcc
Confidence             77889999999999999999999999999999988765

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.6e-19  Score=124.58  Aligned_cols=86  Identities=30%  Similarity=0.412  Sum_probs=67.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHH
Q psy11714         73 LNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMM  145 (272)
Q Consensus        73 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~  145 (272)
                      +|+||||+|+..|+.+++++|+++|++++       ||||+|+..++.+++++|+++|++                    
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~--------------------   60 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--------------------   60 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--------------------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------
Confidence            36778888888888888888888777773       688888888888888888887654                    


Q ss_pred             HHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy11714        146 LDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQ  190 (272)
Q Consensus       146 ~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~  190 (272)
                                  ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        61 ------------~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           61 ------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             ------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                        446778899999999999999999999998875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1.5e-19  Score=155.32  Aligned_cols=117  Identities=19%  Similarity=0.229  Sum_probs=106.6

Q ss_pred             hhHHHHHHHc-CCHHHHHHHHHccCCCCCCCCcccCC--CCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHH
Q psy11714         36 EKRFLLVAER-GDCATVRKMLDELKDQPEVFNINCVD--PLNRSSLIAAIENENIELINILLEYNIQVK-------DALL  105 (272)
Q Consensus        36 ~~~l~~a~~~-g~~~~~~~ll~~~~~~~~~~~~n~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~  105 (272)
                      .+.|+.|+.. |+.+.++.|++.|      +++|..+  ..|.||||+|+..|+.+++++|+++|++++       ||||
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~G------advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHG------ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTT------CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcC------CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            4579999999 9999999999997      9999988  789999999999999999999999999994       7999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL  185 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll  185 (272)
                      +|+..++.+++++|+++|+++                                +.+|..|.||||+|+..|+.+++++|+
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~--------------------------------~~~d~~G~TpL~~A~~~g~~~iv~lLl  321 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADL--------------------------------GARDSEGRDPLTIAMETANADIVTLLR  321 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHCcCCC--------------------------------CCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            999999999999999987654                                478889999999999999999999999


Q ss_pred             hCCCC
Q psy11714        186 EYNIQ  190 (272)
Q Consensus       186 ~~g~~  190 (272)
                      ..+..
T Consensus       322 ~~~~~  326 (368)
T 3jue_A          322 LAKMR  326 (368)
T ss_dssp             HHHC-
T ss_pred             HcCCC
Confidence            87633

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.74  E-value=4.5e-18  Score=121.86  Aligned_cols=91  Identities=22%  Similarity=0.182  Sum_probs=69.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCccc
Q psy11714         69 CVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRT  141 (272)
Q Consensus        69 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t  141 (272)
                      .+|..|.||||+|+..|+.+++++|+++|++++       ||||+|+..++.+++++|+++|+++               
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---------------   68 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV---------------   68 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT---------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---------------
Confidence            366788888888888888888888888887763       6788888888888888888766443               


Q ss_pred             HHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc
Q psy11714        142 IFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV  191 (272)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~  191 (272)
                                       +.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        69 -----------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  101 (115)
T 2l6b_A           69 -----------------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV  101 (115)
T ss_dssp             -----------------TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSH
T ss_pred             -----------------cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence                             456677777777777777777777777777776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=8.4e-17  Score=114.43  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=77.9

Q ss_pred             cccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhh
Q psy11714        157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV  229 (272)
Q Consensus       157 ~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  229 (272)
                      .....|..|.|+||+|+..|+.+++++|++.|+++       .||||+|+..++.+++++|+++|++++           
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-----------   84 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-----------   84 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----------
Confidence            34566789999999999999999999999999988       599999999999999999999999998           


Q ss_pred             hcCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy11714        230 DRSSSTFTPDITPLILAAHMNNYEILKIL  258 (272)
Q Consensus       230 ~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  258 (272)
                          .++..|.||||+|+..++.+++++|
T Consensus        85 ----~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           85 ----AQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             ----CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ----ccccCCCcHHHHHHHcCCHHHHHHh
Confidence                7888999999999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=2.7e-16  Score=111.73  Aligned_cols=87  Identities=22%  Similarity=0.276  Sum_probs=57.8

Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCC
Q psy11714         66 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENK  138 (272)
Q Consensus        66 ~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  138 (272)
                      .....+..|.|+||+|+..|+.+++++|+++|++++       ||||+|+..++.+++++|+++|++             
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-------------   82 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-------------   82 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------------
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------
Confidence            344455666677777777777777777777766662       577777777777777777776544             


Q ss_pred             cccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11714        139 GRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL  184 (272)
Q Consensus       139 ~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~L  184 (272)
                                         ++.+|..|.||||+|+..|+.+++++|
T Consensus        83 -------------------~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           83 -------------------VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             -------------------TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             -------------------ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence                               346677788888888888888888776

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.36  E-value=1.2  Score=33.46  Aligned_cols=133  Identities=16%  Similarity=0.069  Sum_probs=93.8

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCc
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEY  112 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~  112 (272)
                      ++...+|-.|+..|+++....+.+..         +.. ......=..|...|+.++++....+--|+..-+......|+
T Consensus         6 ~D~~~rF~LAL~lg~l~~A~e~a~~l---------~~~-~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~   75 (177)
T 3mkq_B            6 QDPHIRFDLALEYGNLDAALDEAKKL---------NDS-ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGD   75 (177)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHH---------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             CChHHHHHHHHhcCCHHHHHHHHHHh---------CCH-HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            45677899999999999998887763         011 11223445677889999999999998898877777677788


Q ss_pred             HHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHH-HHHHHHhCCCCc
Q psy11714        113 VEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIE-LINILLEYNIQV  191 (272)
Q Consensus       113 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~-~~~~Ll~~g~~~  191 (272)
                      .+-++.+.+-                                    -....+...+++.+...|..+ +++.|.+.|- .
T Consensus        76 ~e~L~kla~i------------------------------------A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r-~  118 (177)
T 3mkq_B           76 VNKLSKMQNI------------------------------------AQTREDFGSMLLNTFYNNSTKERSSIFAEGGS-L  118 (177)
T ss_dssp             HHHHHHHHHH------------------------------------HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-H
T ss_pred             HHHHHHHHHH------------------------------------HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC-h
Confidence            8777766541                                    111223445677777788855 5566666554 3


Q ss_pred             hhHHHHHHHcCCHHHHHHHHh
Q psy11714        192 KDALLHAIKEEYVEAVEILLE  212 (272)
Q Consensus       192 ~t~l~~A~~~~~~~~~~~Ll~  212 (272)
                      .-+...|-.+|..++.+-+++
T Consensus       119 ~eA~~~A~t~g~~~~a~~~~~  139 (177)
T 3mkq_B          119 PLAYAVAKANGDEAAASAFLE  139 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHH
Confidence            466777888999999888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 39/247 (15%)

Query: 43  AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQV 100
           +  G    V+ +L            N  +    + L  A    + E+   LL+    +  
Sbjct: 8   SFMGHLPIVKNLLQRGAS------PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 101 KD-----ALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE 154
           K       L  A +  +   V++LLE            +   +       +   L    +
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 155 VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAV 207
             +  C+     + L  A +   + +  +LLE +             L  A+    ++ V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 208 EILLE------------------WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHM 249
           ++LL                     ++  V       +    +++     +TPL LAA  
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 241

Query: 250 NNYEILK 256
            + E++ 
Sbjct: 242 GHAEMVA 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 9e-08
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 16/206 (7%)

Query: 66  NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
           + N       + L  A+ + N++++ +LL    +           L  A K+  VE    
Sbjct: 157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 216

Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFN-INCVDPLNRSSLIAAIENEN 177
           LL++    +      V+           + +          N  +    + L    +  +
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 276

Query: 178 IELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT 237
           + + ++L+++       ++ A        + +   +     V         V+  +    
Sbjct: 277 VPVADVLIKHG-----VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-- 329

Query: 238 PDITPLILAAHMNNYEILKILLDRGA 263
              +PL  AA   + +I+ +LL  GA
Sbjct: 330 -GYSPLHQAAQQGHTDIVTLLLKNGA 354

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
           L  A    ++ ++  LL+   +  V +      L  A +  + E  + LL+ + K++   
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--- 60

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD 270
                 A  +       D TPL  AA + +  ++K+LL+  A   +   
Sbjct: 61  ------AKAKD------DQTPLHCAARIGHTNMVKLLLENNANPNLATT 97

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 26/213 (12%), Positives = 60/213 (28%), Gaps = 21/213 (9%)

Query: 72  PLNRSSLIAAIENENIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWE 123
             N+     + ++   E+ +      + +           L        +E V+ L++  
Sbjct: 71  SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130

Query: 124 EKIHVHGQPYVSENKGRTIFMMLDELKDQPEV-----FNINCVDPLNRSSLIAAIENENI 178
                      S        +   +      +       +   D +NR+ L   I    +
Sbjct: 131 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 190

Query: 179 ELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTP 238
              +   +Y + +    +   +   +++     E +       +  S             
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250

Query: 239 DI--------TPLILAAHMNNYEILKILLDRGA 263
            +        T L +AA + N  I+  LLD GA
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 49/238 (20%)

Query: 74  NRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEK 125
           +   LI A++NE+++L+  LLE   N+  ++       L +A++    + VE+LL     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 126 IHVHGQPYVSENKGRTIFMMLDELKDQPEV-FNINCVDPLNRSSLIAAIENENIELINIL 184
             +  +   +      I   +  LK       ++N  D    ++ + A     ++ +  L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 185 LEYNIQVKD-----------------ALLHAIKEEYVEAVEILLE--------------- 212
            +    V                   AL+ A ++ +VE ++ILL+               
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 213 WEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDRG 262
                 +       EA+         D+        TPLILA    +  +++ LL++ 
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 34/161 (21%)

Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
           AL+ A ++ +VE ++ILL+      +       +N GR   +      D  +V  I  + 
Sbjct: 151 ALMDAAEKGHVEVLKILLD-----EMGADVNACDNMGRNALIHALLSSDDSDVEAITHL- 204

Query: 163 PLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
                 L+    + N+           + K  L+ A++++++  V+ LLE +E I ++  
Sbjct: 205 ------LLDHGADVNVR--------GERGKTPLILAVEKKHLGLVQRLLE-QEHIEIN-- 247

Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                  D    T       L+LA  +   +I ++L  RGA
Sbjct: 248 -----DTDSDGKT------ALLLAVELKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 48  CATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-----NIQVKD 102
               ++  +    +    +   +     ++L+ A E  ++E++ ILL+      N     
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKDQPEV------ 155
                I          +      +  HG    V   +G+T  ++  E K    V      
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 156 --FNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD 193
               IN  D   +++L+ A+E +  ++  +L +   +    D
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 12/225 (5%)

Query: 39  FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI 98
           FL     GD   V ++L+   D      IN  +    ++L  A  ++N++++  L+E   
Sbjct: 44  FLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 99  QVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNI 158
            +           +  A    L+  E +   G    + N      + + E +   E+   
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 159 NCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIH 218
                   +     IE    E   I+L    Q  ++               L     K +
Sbjct: 158 EV------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 219 VHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
                   +A    +       TPL  AAH    E  +IL++   
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 16/161 (9%), Positives = 41/161 (25%), Gaps = 7/161 (4%)

Query: 102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCV 161
           + L  A     +E +  LL+       +     ++N      + + +L +      +   
Sbjct: 3   NELASAAARGDLEQLTSLLQ-------NNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 55

Query: 162 DPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHG 221
                          +       L+    + +       E+    + + L  +E      
Sbjct: 56  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 115

Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG 262
           +                  T   LA      E++ ++   G
Sbjct: 116 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 36/257 (14%), Positives = 71/257 (27%), Gaps = 48/257 (18%)

Query: 40  LLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--- 96
             VA    C++    L  L    E   +  +   N  +   A EN ++ ++N L E    
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDE--IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 97  ------NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVH------GQPYVSENKGRTIFM 144
                   +   A   A +  ++  +  L E                 +     GR    
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 145 MLDELKDQPEVFN------------------INCVDPLN--RSSLIAAIENENIELINIL 184
           +++ L D P +                       V+ L     +   +  +   +L+   
Sbjct: 212 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS 271

Query: 185 LE-YNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPL 243
                  +   L+    E  ++ +  LL           P        ++     +   L
Sbjct: 272 ECLQGFYMLRNLIRRNDEVLLDDIRFLLS---------IPGIKALAPTATIPGDAN-ELL 321

Query: 244 ILAAHMNNYEILKILLD 260
            LA  + N     +LL 
Sbjct: 322 RLALRLGNQGACALLLS 338

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 24/250 (9%), Positives = 56/250 (22%), Gaps = 40/250 (16%)

Query: 43  AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD 102
                   +  +L           ++  + L +++L  A        +  L      V  
Sbjct: 17  VIHQHEPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73

Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
           A        ++            +      +  +     +    D   D           
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA------- 126

Query: 163 PLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
                + + +  N   E      ++ +Q++          +V  +    E    +   G 
Sbjct: 127 ----PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 223 PYSWEAVDRSSSTFTPDI--------------------------TPLILAAHMNNYEILK 256
             +        +     +                          TPL  A    N  + +
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 257 ILLDRGATLP 266
           +L   GA  P
Sbjct: 243 LLRAHGAPEP 252

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 12/168 (7%), Positives = 41/168 (24%), Gaps = 31/168 (18%)

Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
           +L  A+K   +  +         +              T   +                 
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA---------------- 52

Query: 163 PLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
                  + +++  ++ +++ L++ +  +           +   +    E  + +     
Sbjct: 53  -------VRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 105

Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD 270
                             TPL +A  + +    ++L    +     H 
Sbjct: 106 SIEIANESGE--------TPLDIAKRLKHEHCEELLTQALSGRFNSHV 145

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 37/249 (14%), Positives = 76/249 (30%), Gaps = 34/249 (13%)

Query: 40  LLVAERGDCATVRKMLDELKDQPEVFNINCVDPLN-RSSLIAAIENENIELINILLEY-- 96
           L     G  A    +  E        ++N +DP + R+ L     N + E    L+ +  
Sbjct: 6   LHTEAAGSYAITEPITRE--------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 97  --------NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRT-- 141
                   ++   D      L+ A+       V  L++      ++ +   S        
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 117

Query: 142 ----IFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLH 197
               + + +               + +    ++A  E  +      LL       D    
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 198 AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI---TPLILAAHMNNYEI 254
           A K+         L +      +     +   ++ S+    D    TP++LAA     E+
Sbjct: 178 ARKDSEKYKGRTALHYA-AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 255 LKILLDRGA 263
           +  L+ +GA
Sbjct: 237 VMYLIQQGA 245

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.83
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.77

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-35  Score=241.32  Aligned_cols=211  Identities=15%  Similarity=0.107  Sum_probs=171.8

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCC---cccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------h
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFN---INCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------D  102 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~---~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t  102 (272)
                      .++.++||+|+..|+.+++++|++.+      ++   +|.+|..|.||||+|+..|+.+++++|+++|++++       |
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~------a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~t   80 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFS------AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHH------TTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcC------CCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccch
Confidence            45678899999999999999999986      55   77888999999999999999999999999999883       7


Q ss_pred             HHHHHHHcCcHHHHHHHHccccccccCCCCcc-c---cCCccc---HHHHHHhc--------CCCCccccccCCCCCCCC
Q psy11714        103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYV-S---ENKGRT---IFMMLDEL--------KDQPEVFNINCVDPLNRS  167 (272)
Q Consensus       103 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~-~---~~~~~t---~l~~~~~~--------~~~~~~~~~~~~d~~~~t  167 (272)
                      |||+|+..++.+++++|++.+........... .   .....+   .+......        .....+.+++.+|..|.|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            99999999999999999987655442111100 0   011111   11111110        111225778889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCC
Q psy11714        168 SLIAAIENENIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD  239 (272)
Q Consensus       168 ~L~~a~~~g~~~~~~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g  239 (272)
                      |||+|+..|+.+++++|++.+++.        .||||+|+..++.+++++|+++|++++               .+|..|
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin---------------~~d~~g  225 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT---------------ARMYGG  225 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTS
T ss_pred             cccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC---------------CCCCCC
Confidence            999999999999999999988777        599999999999999999999999999               788999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC
Q psy11714        240 ITPLILAAHMNNYEILKILLDRGAT  264 (272)
Q Consensus       240 ~t~l~~A~~~~~~~iv~~Ll~~ga~  264 (272)
                      .||||+|+.+++.+++++|+++||+
T Consensus       226 ~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         226 RTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999997

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=225.16  Aligned_cols=195  Identities=22%  Similarity=0.192  Sum_probs=138.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hhHHHHHHHc
Q psy11714         38 RFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKE  110 (272)
Q Consensus        38 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l~~A~~~  110 (272)
                      .|+.++..|+.+.++.+|...     +..++.+|..|+||||+|+..|+.+++++|++.+...       .++++.++..
T Consensus         6 ~~~~~a~~G~~~~v~~~l~~~-----~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           6 MVCNLAYSGKLEELKESILAD-----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC-----GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhC-----CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc
Confidence            488899999999999999887     4899999999999999999999999999999988766       3699999999


Q ss_pred             CcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCC-------CccccccCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11714        111 EYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQ-------PEVFNINCVDPLNRSSLIAAIENENIELINI  183 (272)
Q Consensus       111 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-------~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~  183 (272)
                      ++.+++++|+++|++++      ..+..|.||||+|+..+..       ..+.+++.++..|.||||+|+..++.+++++
T Consensus        81 ~~~~i~~~Ll~~~~d~~------~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVN------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             TCHHHHHHHHHTTCCTT------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccchhHHHhccCceeE------eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhh
Confidence            99999999999987766      4455555555555554332       1144555555555555555555555555555


Q ss_pred             HHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy11714        184 LLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILK  256 (272)
Q Consensus       184 Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~  256 (272)
                      |++.|.++       .||||+|+..|+.+++++|+++|++++               .+|..|.||||+|. .|+.++++
T Consensus       155 L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~---------------~~d~~g~tpl~~A~-~~~~~i~~  218 (223)
T d1uoha_         155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY---------------IENKEEKTPLQVAK-GGLGLILK  218 (223)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC---------------CCCTTSCCHHHHCC-TTHHHHHH
T ss_pred             hccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCC---------------CCCCCCCCHHHHHH-CCCHHHHh
Confidence            55555555       355555555555555555555555555               45555555555552 45555555


Q ss_pred             HHH
Q psy11714        257 ILL  259 (272)
Q Consensus       257 ~Ll  259 (272)
                      +|+
T Consensus       219 ~Ll  221 (223)
T d1uoha_         219 RMV  221 (223)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            555

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-33  Score=241.64  Aligned_cols=230  Identities=17%  Similarity=0.182  Sum_probs=138.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIK  109 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~  109 (272)
                      ++||.||..|+.++|++|++.|      +++|.+|..|.||||+|+..|+.+++++|+++|++++       ||||+|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g------~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRG------ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT------CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            4688888888888888888886      7888888888888888888888888888888887772       56666666


Q ss_pred             cCcHHHHHHHHcccccccc-----------------------------------------------------------CC
Q psy11714        110 EEYVEAVEILLEWEEKIHV-----------------------------------------------------------HG  130 (272)
Q Consensus       110 ~~~~~~~~~Ll~~g~~~~~-----------------------------------------------------------~~  130 (272)
                      .|+.+++++|+..+++...                                                           ++
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            6666665555543332210                                                           00


Q ss_pred             C-CccccCCcccHHHHHHhcCCC-------Cccccc---------------------------------cCCCCCCCCHH
Q psy11714        131 Q-PYVSENKGRTIFMMLDELKDQ-------PEVFNI---------------------------------NCVDPLNRSSL  169 (272)
Q Consensus       131 ~-~~~~~~~~~t~l~~~~~~~~~-------~~~~~~---------------------------------~~~d~~~~t~L  169 (272)
                      . +...+..+.+||+.|+..+..       ..+.++                                 ...+..+.|||
T Consensus       156 ~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            0 012334555666665543221       001111                                 12223333444


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCC----Ccchhhhh---------
Q psy11714        170 IAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHG----QPYSWEAV---------  229 (272)
Q Consensus       170 ~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~----~~~~~~~~---------  229 (272)
                      ++|+..+..+++++++..+...       .||++.|+..++.+++++|+++|++++...    ++++....         
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~  315 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF  315 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHH
T ss_pred             HHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeee
Confidence            4444444444444444443333       245555555555555555555555444211    12221110         


Q ss_pred             -----hcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        230 -----DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       230 -----~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                           -..+.+|..|.||||+|+++|+.++|++|+++|||++..|..|
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G  363 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG  363 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             eccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence                 1123788899999999999999999999999999999988653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-32  Score=219.73  Aligned_cols=201  Identities=18%  Similarity=0.130  Sum_probs=177.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh----------hHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK----------DALLH  106 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------t~l~~  106 (272)
                      .+||+||..|+.+.++.|++..     +..++.+|..|.||||+|+..|+.+++++|+++|++++          +|+++
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~-----~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~   76 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSK-----PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI   76 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHC-----GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcC-----CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccc
Confidence            4699999999999999999976     38899999999999999999999999999999999874          59999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcCCHH
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENENIE  179 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g~~~  179 (272)
                      ++..+..++++.++..+...+.    ...+..+.++++.++......       .+...+.+|..|.||||+|+..|+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          77 ACSVGNLEVVKSLYDRPLKPDL----NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHTCHHHHHHHHSSSSCCCT----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccccccccccccccc----cccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccc
Confidence            9999999999999998776542    234577889999988765432       25677888999999999999999999


Q ss_pred             HHHHHHhCCC-Cc-------hhHHHHHHHcCCHHHHHHHHh-cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcC
Q psy11714        180 LINILLEYNI-QV-------KDALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMN  250 (272)
Q Consensus       180 ~~~~Ll~~g~-~~-------~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~  250 (272)
                      ++++|++.|. ++       +||||+|+..++.+++++|++ .|++++               .+|..|.||||+|+   
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~---------------~~d~~g~t~l~~A~---  214 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD---------------LVDNKGAKAEDVAL---  214 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC---------------CCCTTSCCTGGGCS---
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCC---------------CcCCCCCCHHHHHh---
Confidence            9999999874 43       599999999999999999997 599999               78899999999998   


Q ss_pred             CHHHHHHHHHCCCC
Q psy11714        251 NYEILKILLDRGAT  264 (272)
Q Consensus       251 ~~~iv~~Ll~~ga~  264 (272)
                      +.+++++|+++|+|
T Consensus       215 ~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         215 NEQVKKFFLNNVVD  228 (229)
T ss_dssp             CHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHcCCC
Confidence            45899999999997

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-31  Score=220.23  Aligned_cols=217  Identities=21%  Similarity=0.267  Sum_probs=163.7

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCChh-----------
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDP-LNRSSLIAAIENENIELINILLEYNIQVK-----------  101 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------  101 (272)
                      ++.+.|+.|++.|++++|++|++.|      +++|.++. .|.||||+|+..|+.+++++|++.|....           
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G------~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~   77 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGG------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCC------CCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhH
Confidence            4567899999999999999999998      99998765 69999999999999999999999887661           


Q ss_pred             -----------------------------hHHHHHHHcCcHHHHHHHHccccccccCCCC----ccccCCcccHHHHHHh
Q psy11714        102 -----------------------------DALLHAIKEEYVEAVEILLEWEEKIHVHGQP----YVSENKGRTIFMMLDE  148 (272)
Q Consensus       102 -----------------------------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----~~~~~~~~t~l~~~~~  148 (272)
                                                   ++++.|+..+....+..++....+++.....    ......|.||||+|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T d1wdya_          78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             HHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHH
Confidence                                         3555555555555555555544444322111    1223456667776666


Q ss_pred             cCCC--------CccccccCCCCCCCCHHHHHHHc----CCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHH
Q psy11714        149 LKDQ--------PEVFNINCVDPLNRSSLIAAIEN----ENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEI  209 (272)
Q Consensus       149 ~~~~--------~~~~~~~~~d~~~~t~L~~a~~~----g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~  209 (272)
                      .+..        ..+.+++..+..+.+++..+...    +..+++++|+++|+++       .||||+|+..++.+++++
T Consensus       158 ~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~  237 (285)
T d1wdya_         158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHH
Confidence            5431        11456666666666666555432    2245667777777666       489999999999999999


Q ss_pred             HHh-cCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        210 LLE-WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       210 Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      |++ .|++++               .+|..|.||||+|+++|+.++|++|+++|||+|.+|-+
T Consensus       238 lL~~~g~din---------------~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~~  285 (285)
T d1wdya_         238 LLEQEHIEIN---------------DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV  285 (285)
T ss_dssp             HHHSSSCCTT---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSCC
T ss_pred             HHHcCCCCCc---------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCc
Confidence            997 588988               78899999999999999999999999999999999854

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=1.2e-31  Score=221.78  Aligned_cols=201  Identities=19%  Similarity=0.189  Sum_probs=163.4

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hhHHHHH
Q psy11714         35 QEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHA  107 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l~~A  107 (272)
                      +.++|+.|+..|+.+.|++||+.|      +++|.+|..|.||||+|+..|+.+++++|+++|.+.       .+||+.+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~G------advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERG------ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHC------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCC------CCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccc
Confidence            457899999999999999999997      999999999999999999999999999999999887       3699999


Q ss_pred             HHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc---------------------------------
Q psy11714        108 IKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE---------------------------------  154 (272)
Q Consensus       108 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~---------------------------------  154 (272)
                      +..++.++++.|+++|+..+      ..+..+.++++++........                                 
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVG------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS  187 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhcccccCcccc------cccccCccccccccccccchhccccccccccccccccccccccccccchhhhcc
Confidence            99999999999999988776      566777777776553311100                                 


Q ss_pred             -cccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchh
Q psy11714        155 -VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSW  226 (272)
Q Consensus       155 -~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  226 (272)
                       ..+....+..|.||||.|+..|+.++++.|++.|+++       .||||+|+..|+.+++++|+++|++++        
T Consensus       188 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~--------  259 (291)
T d1s70b_         188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME--------  259 (291)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             cccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--------
Confidence             1234556677888888888888888888888888887       478888888888888888888888887        


Q ss_pred             hhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy11714        227 EAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP  266 (272)
Q Consensus       227 ~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~  266 (272)
                             .+|..|.||||+|++    +++++|.+-++..|
T Consensus       260 -------~~d~~G~TaL~~A~e----~~~~~L~~~~~~~~  288 (291)
T d1s70b_         260 -------AVNKVGQTAFDVADE----DILGYLEELQKKQN  288 (291)
T ss_dssp             -------CCCTTSCCTTTSCCS----GGGHHHHHHHHHTT
T ss_pred             -------CcCCCCCCHHHHHHH----HHHHHHHHHhhhcc
Confidence                   677788888888864    57777766554444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=202.60  Aligned_cols=168  Identities=19%  Similarity=0.130  Sum_probs=151.9

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l  104 (272)
                      ...+.++||+|+..|+.++++.++..+      ......+..+.++++.++..++.+++++|+++|++++       |||
T Consensus        34 D~~G~TpLh~Aa~~g~~e~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL  107 (223)
T d1uoha_          34 DQDSRTALHWACSAGHTEIVEFLLQLG------VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL  107 (223)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHT------CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCCCHHHHHHHhhhhcccccccccc------cccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchh
Confidence            345678899999999999999999987      7777788889999999999999999999999999884       799


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcCC
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENEN  177 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g~  177 (272)
                      |+|+..++.+++++|+++|++++      .++..+.||||+++..+...       .+.+++.+|..|.||||+|+..|+
T Consensus       108 ~~A~~~~~~e~~~~Ll~~g~d~~------~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~  181 (223)
T d1uoha_         108 HYAASKNRHEIAVMLLEGGANPD------AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER  181 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             hHHHHcCCHHHHHHHHHCCCCCC------CcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCc
Confidence            99999999999999999999988      67889999999999875432       267899999999999999999999


Q ss_pred             HHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHh
Q psy11714        178 IELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLE  212 (272)
Q Consensus       178 ~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~  212 (272)
                      .+++++|+++|+++       +||||+| ..|+.+++++|++
T Consensus       182 ~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         182 VEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999       5999998 4689999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4e-30  Score=208.59  Aligned_cols=158  Identities=21%  Similarity=0.183  Sum_probs=129.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh----------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCC
Q psy11714         69 CVDPLNRSSLIAAIENENIELINILLEYNIQV----------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENK  138 (272)
Q Consensus        69 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  138 (272)
                      ..+.+|.||||+|+..|+.+++++|+++|+++          +||||+|+..|+.+++++|+++|++++      .++..
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~------~~d~~   77 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL------VAERG   77 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS------CCCTT
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccc------ccccc
Confidence            46789999999999999999999999999874          289999999999999999999987776      34444


Q ss_pred             cccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----------------------------
Q psy11714        139 GRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQ----------------------------  190 (272)
Q Consensus       139 ~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~----------------------------  190 (272)
                      |.|||++|                          +..++.+++++|++.+..                            
T Consensus        78 g~tpL~~A--------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (255)
T d1oy3d_          78 GHTALHLA--------------------------CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD  131 (255)
T ss_dssp             SCCHHHHH--------------------------TTTTCHHHHHHHSSSCCSSCCCC-----------------------
T ss_pred             cchhhhhh--------------------------hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHH
Confidence            55555554                          444444444444432211                            


Q ss_pred             -------------------c-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHH
Q psy11714        191 -------------------V-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLI  244 (272)
Q Consensus       191 -------------------~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~  244 (272)
                                         +       .||||+|+..++.+++++|++++++.+.              ..+..|.||||
T Consensus       132 ~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~--------------~~~~~g~TpL~  197 (255)
T d1oy3d_         132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK--------------PEPTCGRTPLH  197 (255)
T ss_dssp             ------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--------------CCTTTCCCHHH
T ss_pred             hhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccc--------------ccccccccccc
Confidence                               1       4899999999999999999999998873              45778999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        245 LAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       245 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      +|+..++.+++++|+++|++++.+|.++
T Consensus       198 ~A~~~~~~~~v~~Ll~~gadin~~d~~g  225 (255)
T d1oy3d_         198 LAVEAQAASVLELLLKAGADPTARMYGG  225 (255)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccccccHHHHHHHHHHCCCCCCCCCCCC
Confidence            9999999999999999999999998653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=5.8e-30  Score=209.78  Aligned_cols=203  Identities=16%  Similarity=0.170  Sum_probs=167.7

Q ss_pred             hhhHHHHHHHcCCHHHHHHHH--------HccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-----
Q psy11714         35 QEKRFLLVAERGDCATVRKML--------DELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-----  101 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~ll--------~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----  101 (272)
                      +.++||+|+..|+.++++.|+        +.|      +++|.+|..|+||||+|+..|+.+++++|+++|++++     
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~G------advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~  106 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAG------ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS  106 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcC------CCccccCCCCCeeecccccccccccccccccccccccccccc
Confidence            668899999999999887764        455      8999999999999999999999999999999999984     


Q ss_pred             --hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc------------------cccccCC
Q psy11714        102 --DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE------------------VFNINCV  161 (272)
Q Consensus       102 --t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~------------------~~~~~~~  161 (272)
                        |||++|+..++.++++++...+.....   ....+....++.+.+........                  ....+..
T Consensus       107 g~t~l~~a~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (277)
T d2fo1e1         107 ERSALHQAAANRDFGMMVYMLNSTKLKGD---IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE  183 (277)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHTTSHHHHHT---TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSS
T ss_pred             ccccccchhhhcchhhhhhhhhccccccc---ccccccccchhHHHHHhccccccccccccccccccccccccccccccc
Confidence              799999999999999999876532210   01234455566555544332211                  2455667


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH-hCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCC
Q psy11714        162 DPLNRSSLIAAIENENIELINILL-EYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS  233 (272)
Q Consensus       162 d~~~~t~L~~a~~~g~~~~~~~Ll-~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~  233 (272)
                      +..|.||||+++..++.+++++++ ..+.+.       .||||+|+..|+.+++++|+++|++++               
T Consensus       184 ~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin---------------  248 (277)
T d2fo1e1         184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE---------------  248 (277)
T ss_dssp             SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS---------------
T ss_pred             ccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC---------------
Confidence            788999999999999999998766 566655       599999999999999999999999999               


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        234 STFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       234 ~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                      .+|..|.||||+|+++|+.++|++|++.
T Consensus       249 ~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         249 AVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             CCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            7899999999999999999999999863

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.6e-28  Score=209.55  Aligned_cols=212  Identities=18%  Similarity=0.241  Sum_probs=168.4

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh------------
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK------------  101 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------  101 (272)
                      .....++.|+..++.++++.|++.+      .+++..+..|.+||++|+..++.+++++|+++|++++            
T Consensus       131 ~~~~~l~~a~~~~~~~~v~~ll~~~------~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  204 (408)
T d1n11a_         131 KGFTPLHVAAKYGKVRVAELLLERD------AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI  204 (408)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcC------CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchh
Confidence            3456688899999999999999887      8888888889999999999999999999999887762            


Q ss_pred             ----------------------------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC
Q psy11714        102 ----------------------------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP  153 (272)
Q Consensus       102 ----------------------------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~  153 (272)
                                                  |||++|+..+..+++++++..+...+      ..+..|.||++.++......
T Consensus       205 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~l~~a~~~~~~~  278 (408)
T d1n11a_         205 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN------LGNKSGLTPLHLVAQEGHVP  278 (408)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT------CCCTTCCCHHHHHHHHTCHH
T ss_pred             hhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccc------cccCCCCChhhhhhhcCcHH
Confidence                                        36666666666666666666655554      45666777777777664422


Q ss_pred             -------ccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCC
Q psy11714        154 -------EVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHV  219 (272)
Q Consensus       154 -------~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  219 (272)
                             .+.+++..+..+.||||.++..+..++++++++.|+++       +||||+|+..|+.+++++|+++|++++ 
T Consensus       279 i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n-  357 (408)
T d1n11a_         279 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-  357 (408)
T ss_dssp             HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-
T ss_pred             HHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-
Confidence                   15677778888888888888888888888888888877       589999999999999999999999999 


Q ss_pred             CCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHH---HHCCCCCCCCCCCC
Q psy11714        220 HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKIL---LDRGATLPMPHDVR  272 (272)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~L---l~~ga~~~~~~~~~  272 (272)
                                    .+|..|.||||+|+++|+.++|++|   ++++++....+++|
T Consensus       358 --------------~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~  399 (408)
T d1n11a_         358 --------------EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR  399 (408)
T ss_dssp             --------------CCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----CC
T ss_pred             --------------CCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccccccccc
Confidence                          7899999999999999999999755   46677766665543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.7e-30  Score=203.37  Aligned_cols=183  Identities=16%  Similarity=0.148  Sum_probs=158.5

Q ss_pred             hhhHHHHHHHcCCHHHHHH----HHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hH
Q psy11714         35 QEKRFLLVAERGDCATVRK----MLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DA  103 (272)
Q Consensus        35 ~~~~l~~a~~~g~~~~~~~----ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~  103 (272)
                      +.++||+|+..|+.+.+..    +...+      .++|.+|.+|+||||+|+..|+.+++++|+++|++++       ||
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~------~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~   75 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDL------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----C------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCC------CCcccCCCCCCccccccccccccccccccccccccccccccccccc
Confidence            3467999999999766554    44444      8899999999999999999999999999999999984       79


Q ss_pred             HHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHH
Q psy11714        104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI  183 (272)
Q Consensus       104 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~  183 (272)
                      |++++..++.++++.|++.+.....                          ..........|.||||.|+..++.+++++
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~--------------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  129 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHL--------------------------HSILKATNYNGHTCLHLASIHGYLGIVEL  129 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSS--------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccccchhhhhcccccc--------------------------cccccccccccchhhhHHhhcCChhheee
Confidence            9999999999999999997765431                          12344455678999999999999999999


Q ss_pred             HHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHH
Q psy11714        184 LLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEIL  255 (272)
Q Consensus       184 Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv  255 (272)
                      |+..|++.        .||||+|+..|+.+++++|+++|+|++               .++..|.||||+|+..++.+++
T Consensus       130 l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~---------------~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         130 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN---------------RVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC---------------CCCTTCCCGGGGCTTSSCHHHH
T ss_pred             ecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc---------------ccCCCCCCHHHHHHHCCCHHHH
Confidence            99988766        589999999999999999999999999               7899999999999999999999


Q ss_pred             HHHHHCCCC
Q psy11714        256 KILLDRGAT  264 (272)
Q Consensus       256 ~~Ll~~ga~  264 (272)
                      ++|++.+.+
T Consensus       195 ~~l~~~~~~  203 (221)
T d1iknd_         195 QQLGQLTLE  203 (221)
T ss_dssp             HHHHTTSCG
T ss_pred             HHHHHcCCc
Confidence            999998765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.2e-27  Score=188.12  Aligned_cols=185  Identities=22%  Similarity=0.213  Sum_probs=156.2

Q ss_pred             HHHHHHHHHccCCCCCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcHHHHHHH
Q psy11714         48 CATVRKMLDELKDQPEVFNINC-VDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYVEAVEIL  119 (272)
Q Consensus        48 ~~~~~~ll~~~~~~~~~~~~n~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~~~~~~L  119 (272)
                      .++|+.|++.|      +++|. .|.+|.||||+||..|+.+++++|+++|++++       ++++.++..++.......
T Consensus         2 ~~~v~~Ll~~g------~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           2 AQVISDLLAQG------AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHH------HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCC------CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccc
Confidence            47899999998      89997 58899999999999999999999999999884       699999988888877776


Q ss_pred             HccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-
Q psy11714        120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-  191 (272)
Q Consensus       120 l~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-  191 (272)
                      ........     ......+.++.+.+.......       .+.+++..+..|.|||++++..+..++++.+++++.++ 
T Consensus        76 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~  150 (209)
T d1ot8a_          76 LRNRATNL-----NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD  150 (209)
T ss_dssp             HTCTTCCT-----TCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cccccccc-----ccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc
Confidence            66433222     123345566666655443221       15678889999999999999999999999999999887 


Q ss_pred             ------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy11714        192 ------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKIL  258 (272)
Q Consensus       192 ------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  258 (272)
                            .||||+|+..|+.+++++|+++|++++               .+|..|.||||+|+++|+.++|++|
T Consensus       151 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n---------------~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         151 AQDDKDETPLFLAAREGSYEASKALLDNFANRE---------------ITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccchhccccHHHHHHHHHHCCCCCC---------------CcCCCCCCHHHHHHHcCCHHHHhhc
Confidence                  599999999999999999999999998               7889999999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.9e-27  Score=189.56  Aligned_cols=180  Identities=17%  Similarity=0.162  Sum_probs=153.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCC-CCh-------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHH
Q psy11714         75 RSSLIAAIENENIELINILLEYN-IQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMML  146 (272)
Q Consensus        75 ~t~L~~A~~~~~~~~v~~Ll~~g-~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~  146 (272)
                      .||||+|+..|+.++++.|++.+ .++       .||||+|+..|+.+++++|+++|++++...   ..+..+.++++++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~---~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD---YPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGG---CCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccc---ccccccccccccc
Confidence            37999999999999999988753 344       489999999999999999999999876322   3457899999998


Q ss_pred             HhcCCCCc---------cccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHH
Q psy11714        147 DELKDQPE---------VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEIL  210 (272)
Q Consensus       147 ~~~~~~~~---------~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~L  210 (272)
                      ........         ..+....+..+.|+++.++..++.+++++|+..|.+.       +||||+|+..++.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            87644321         2345567778999999999999999999999998777       5999999999999999999


Q ss_pred             HhcC-ccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCC
Q psy11714        211 LEWE-EKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD-RGATLPMPHDVR  272 (272)
Q Consensus       211 l~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~  272 (272)
                      +++| .+++               .++..|.||||+|+.+++.++|++|++ +|++++.+|.++
T Consensus       158 l~~~~~~in---------------~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         158 CGLGKSAVN---------------WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             HTTTCCCSC---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             ccccccccc---------------ccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence            9987 5666               678899999999999999999999997 599999998653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=6.6e-29  Score=203.41  Aligned_cols=207  Identities=21%  Similarity=0.197  Sum_probs=163.5

Q ss_pred             HHHHHHH-cCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH--------HHCCCChh-------
Q psy11714         38 RFLLVAE-RGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL--------LEYNIQVK-------  101 (272)
Q Consensus        38 ~l~~a~~-~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~L--------l~~g~~~~-------  101 (272)
                      +|+.++. .|...+++.|.+.+      ++.... .+|+||||+|+..|+.++|++|        ++.|++++       
T Consensus         3 p~~~~~~~~~~~~~~~~l~~~~------~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~   75 (277)
T d2fo1e1           3 PIKLHTEAAGSYAITEPITRES------VNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN   75 (277)
T ss_dssp             CCHHHHHHHSSSCCCSCCSTTT------TTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred             hHHHHHHhCCCHHHHHHHHhcC------CCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCC
Confidence            3554444 46666665555543      454332 3699999999999999888776        56788884       


Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc----------cccccCCCCCCCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE----------VFNINCVDPLNRSSLIA  171 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~----------~~~~~~~d~~~~t~L~~  171 (272)
                      ||||+|+..|+.+++++|+++|++++      .++..|.||++.+...+....          ...++..+..+.++.+.
T Consensus        76 TpLh~A~~~g~~~iv~~Ll~~Gad~n------~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  149 (277)
T d2fo1e1          76 TPLMLAVLARRRRLVAYLMKAGADPT------IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  149 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSC------CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             eeeccccccccccccccccccccccc------cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHH
Confidence            89999999999999999999999998      678899999999998765322          24667788899999999


Q ss_pred             HHHcCCHH---HHHHHHhCCCCc---------------hhHHHHHHHcCCHHHHHHHH-hcCccCCCCCCcchhhhhhcC
Q psy11714        172 AIENENIE---LINILLEYNIQV---------------KDALLHAIKEEYVEAVEILL-EWEEKIHVHGQPYSWEAVDRS  232 (272)
Q Consensus       172 a~~~g~~~---~~~~Ll~~g~~~---------------~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~  232 (272)
                      +...+..+   .+..+.+.....               .|+||+++..++.+++++++ ..+.+.+              
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~--------------  215 (277)
T d2fo1e1         150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--------------  215 (277)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--------------
T ss_pred             HHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccc--------------
Confidence            99876533   444554443222               48999999999999998765 5677776              


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        233 SSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       233 ~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                       .+|..|.||||+|+..|+.++|++|+++|||++.+|.++
T Consensus       216 -~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G  254 (277)
T d2fo1e1         216 -KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD  254 (277)
T ss_dssp             -CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCC
Confidence             678899999999999999999999999999999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.4e-26  Score=177.57  Aligned_cols=204  Identities=17%  Similarity=0.156  Sum_probs=154.6

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      ++.++||+|+..|+.++++.|++...  ..++++|.+|..|.||||+|+..|+.+++++|+++|++++       ++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~--~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQ--QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHH--HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHH--HCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            35678999999999999999886210  0038999999999999999999999999999999998874       59999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc--------cccccCCCCCCCCHHHHHHHcCCH
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE--------VFNINCVDPLNRSSLIAAIENENI  178 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~--------~~~~~~~d~~~~t~L~~a~~~g~~  178 (272)
                      |....+.++++.+........  ...........++++..........        ..........+.++|+.|+..+..
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGT--LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTS--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccchhhhhhcccccc--ccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            999999999888776433221  1111233455667766655432211        112334456778888888888888


Q ss_pred             HHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCC
Q psy11714        179 ELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN  251 (272)
Q Consensus       179 ~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  251 (272)
                      .+++.++++|.+.       .||||+|+..|+.+++++|+++|++++               .+|..|.||||+|+++|+
T Consensus       158 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n---------------~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS---------------LKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT---------------CCCTTSCCTTTTCSSHHH
T ss_pred             hhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC---------------CCCCCCCCHHHHHHhCCC
Confidence            8888888888766       478888888888888888888888888               677888888888888888


Q ss_pred             HHHHH
Q psy11714        252 YEILK  256 (272)
Q Consensus       252 ~~iv~  256 (272)
                      .++||
T Consensus       223 ~divk  227 (228)
T d1k1aa_         223 IDILR  227 (228)
T ss_dssp             HHHHT
T ss_pred             ccccC
Confidence            87775

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.3e-28  Score=208.91  Aligned_cols=185  Identities=17%  Similarity=0.121  Sum_probs=140.0

Q ss_pred             cChhhhHHHHHHHcCCHHHHHH---HHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------
Q psy11714         32 LTPQEKRFLLVAERGDCATVRK---MLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------  101 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~---ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------  101 (272)
                      .....++|+.|++.|+.+.++.   |++.|      +++|.+|..|.||||+|+..||.++|++|+++|++++       
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~------~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSD------EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CC------SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCC------CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            3456788999999999887765   56665      9999999999999999999999999999999999872       


Q ss_pred             --hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHH
Q psy11714        102 --DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIE  179 (272)
Q Consensus       102 --t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~  179 (272)
                        ||||+|+..|+.+++++|+++|++..                             +.+..+..+.||++.|+.+|+.+
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~-----------------------------~~~~~~~~~~t~l~~A~~~g~~~  211 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEA-----------------------------TAMIQAENYYAFRWAAVGRGHHN  211 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGH-----------------------------HHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCccc-----------------------------ccccccCCCcchhhHHhhcCHHH
Confidence              79999999999999999999887543                             11222233455666666677777


Q ss_pred             HHHHHHhCCCCc--------------------------------------------------------hhHHHHHHHcCC
Q psy11714        180 LINILLEYNIQV--------------------------------------------------------KDALLHAIKEEY  203 (272)
Q Consensus       180 ~~~~Ll~~g~~~--------------------------------------------------------~t~l~~A~~~~~  203 (272)
                      ++++|+++|+++                                                        .++++.|+..+.
T Consensus       212 iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~  291 (346)
T d2ajaa1         212 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL  291 (346)
T ss_dssp             HHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCCh
Confidence            777777666543                                                        156667777788


Q ss_pred             HHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        204 VEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       204 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                      .+++++|++.+.....          ......+..|.||||+|++.|+.++|++|++.
T Consensus       292 ld~v~~Ll~~~~~~~~----------~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         292 LDDIRFLLSIPGIKAL----------APTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHTSTTTGGG----------SSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHHHhCcChhhh----------cccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            8888998887654321          01113456789999999999999999999964

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=174.23  Aligned_cols=146  Identities=21%  Similarity=0.237  Sum_probs=103.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChhhHHHHHHHcCcHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAV  116 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~t~l~~A~~~~~~~~~  116 (272)
                      ++||.|+..|++++++.|++.|      +++|.+|..|.||||+|+ .|+.+++++|+++|++++               
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g------~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~---------------   60 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN------VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD---------------   60 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC------CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT---------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC------CCcCccCCcccccccccc-cccccccccccccccccc---------------
Confidence            5778888888888888888876      788888888888887765 577777777777766652               


Q ss_pred             HHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-----
Q psy11714        117 EILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-----  191 (272)
Q Consensus       117 ~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-----  191 (272)
                                                                 ..+..+.++++.++..+..+.++.|+..+.++     
T Consensus        61 -------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~   97 (156)
T d1ihba_          61 -------------------------------------------LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN   97 (156)
T ss_dssp             -------------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -------------------------------------------cccccCccccccccccccccccccccccccccccccc
Confidence                                                       22334444455555555555555554444433     


Q ss_pred             --hhHHHHHHHcCCHHHHHHHHhcCc-cCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy11714        192 --KDALLHAIKEEYVEAVEILLEWEE-KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG  262 (272)
Q Consensus       192 --~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~g  262 (272)
                        .+++++|+..++.+++++|+++|+ +++               .++..|.||||+|++.++.+++++|+++|
T Consensus        98 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~---------------~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          98 EGNLPLHLAAKEGHLRVVEFLVKHTASNVG---------------HRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCCCTT---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccc---------------ccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence              355566666666777777777765 555               67888999999999999999999999998

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.7e-26  Score=170.02  Aligned_cols=146  Identities=19%  Similarity=0.306  Sum_probs=115.5

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~  108 (272)
                      ...|+.|+..|+++.|++||..+     ++++|..|..|+||||+|+ .++.+++++|+++|.+++       +|++.++
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~-----~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRE-----LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-----CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhC-----CCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccc
Confidence            35699999999999999999986     4899999999999999886 478899999999888773       4777777


Q ss_pred             HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy11714        109 KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYN  188 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g  188 (272)
                      ..++.+++++++++|+++                                +.+|..|.||||+|+..|            
T Consensus        77 ~~~~~~~~~~~l~~~~~~--------------------------------n~~~~~~~t~L~~A~~~~------------  112 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADV--------------------------------NVPDGTGALPIHLAVQEG------------  112 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS--------------------------------CCCCTTSCCHHHHHHHHT------------
T ss_pred             cccccccccccccccccc--------------------------------ccccCCCCeeeccccccc------------
Confidence            777777777777766443                                355666667666666555            


Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC
Q psy11714        189 IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR  261 (272)
Q Consensus       189 ~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~  261 (272)
                                    +.+++++|+ .|++++               .+|..|.||||+|+.+|+.+++++|++|
T Consensus       113 --------------~~~i~~~L~-~~~~~~---------------~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         113 --------------HTAVVSFLA-AESDLH---------------RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             --------------CHHHHHHHH-TTSCTT---------------CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             --------------ccccccccc-cccccc---------------ccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence                          455555554 466666               6788899999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=184.41  Aligned_cols=153  Identities=22%  Similarity=0.154  Sum_probs=132.1

Q ss_pred             CCCcHHHHHHHcCCH----HHHHHHHHCCCCh-------hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCccc
Q psy11714         73 LNRSSLIAAIENENI----ELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRT  141 (272)
Q Consensus        73 ~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t  141 (272)
                      +|.||||+|+..|+.    ++++.+...|+++       +||||+|+..++.+++++|+++|++                
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d----------------   64 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD----------------   64 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC----------------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc----------------
Confidence            589999999999985    4556667788877       3899999999999999999998755                


Q ss_pred             HHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------------hhHHHHHHHcCCHHHHH
Q psy11714        142 IFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------------KDALLHAIKEEYVEAVE  208 (272)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------------~t~l~~A~~~~~~~~~~  208 (272)
                                      ++.+|..|.|||++++..|..++++.|+..+.+.             .|||+.|+..++.++++
T Consensus        65 ----------------~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  128 (221)
T d1iknd_          65 ----------------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE  128 (221)
T ss_dssp             ----------------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             ----------------ccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhhee
Confidence                            4577889999999999999999999999987665             48999999999999999


Q ss_pred             HHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q psy11714        209 ILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV  271 (272)
Q Consensus       209 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  271 (272)
                      +|+..|+.++.              ..+..|.||||+|+..|+.+++++|+++|||++.++..
T Consensus       129 ~l~~~~~~~~~--------------~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~  177 (221)
T d1iknd_         129 LLVSLGADVNA--------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ  177 (221)
T ss_dssp             HHHHHTCCTTC--------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT
T ss_pred             eecccCccccc--------------ccccCCCCccccccccccHHHHHHHHhcCCcccccCCC
Confidence            99999999883              34567999999999999999999999999999999854

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=2e-26  Score=190.09  Aligned_cols=174  Identities=18%  Similarity=0.104  Sum_probs=143.8

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hhHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l  104 (272)
                      ...+.++|++|+..|+.++++.|++.+      .+.+..+..+.+||++|+..++.++++.|+++|...       .+|+
T Consensus        70 d~~G~T~L~~A~~~g~~eiv~~Ll~~~------~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  143 (291)
T d1s70b_          70 NVDGLTALHQACIDDNVDMVKFLVENG------ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL  143 (291)
T ss_dssp             CTTCCBHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCCcHHHHHHhcCCceeeeeecccc------cccccccccccccccccccccccchhhcccccCcccccccccCcccc
Confidence            455678899999999999999999997      888888889999999999999999999999998766       3699


Q ss_pred             HHHHHcCcHHHHHHHHcc-cccccc--------------------CCCCccccCCcccHHHHHHhcCCC-------Cccc
Q psy11714        105 LHAIKEEYVEAVEILLEW-EEKIHV--------------------HGQPYVSENKGRTIFMMLDELKDQ-------PEVF  156 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~-g~~~~~--------------------~~~~~~~~~~~~t~l~~~~~~~~~-------~~~~  156 (272)
                      ++|+..+..++++.++.. +.++..                    .......+..+.|||+.++..+..       ..+.
T Consensus       144 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~  223 (291)
T d1s70b_         144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY  223 (291)
T ss_dssp             HHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             ccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccccee
Confidence            999999999988888753 222220                    112234567899999999987653       3378


Q ss_pred             cccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCc
Q psy11714        157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEE  215 (272)
Q Consensus       157 ~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~  215 (272)
                      +++.++..|+||||+|+..|+.+++++|+++|+|+       +||||+|+.    +++++|.+...
T Consensus       224 din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~~  285 (291)
T d1s70b_         224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQK  285 (291)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHhh
Confidence            99999999999999999999999999999999999       599999974    56677766443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=163.25  Aligned_cols=123  Identities=17%  Similarity=0.143  Sum_probs=110.0

Q ss_pred             hhhccChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh------
Q psy11714         28 VEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK------  101 (272)
Q Consensus        28 ~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------  101 (272)
                      .......+.++||+|+ .|+.+++++|++.+      ++++..+..|.++|+.++..++.+.++.|++.+.+++      
T Consensus        27 ~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~------a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   99 (156)
T d1ihba_          27 VNAQNGFGRTALQVMK-LGNPEIARRLLLRG------ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG   99 (156)
T ss_dssp             TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCccCCcccccccccc-cccccccccccccc------cccccccccCccccccccccccccccccccccccccccccccc
Confidence            3444556788999775 79999999999997      9999999999999999999999999999999998884      


Q ss_pred             -hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        102 -DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       102 -t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                       +|+++|+..++.+++++|+++++                               .+.+.+|..|.||||+|+..|+.++
T Consensus       100 ~~~l~~a~~~~~~~~~~~Ll~~~~-------------------------------~~~~~~d~~g~TpL~~A~~~~~~~i  148 (156)
T d1ihba_         100 NLPLHLAAKEGHLRVVEFLVKHTA-------------------------------SNVGHRNHKGDTACDLARLYGRNEV  148 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSC-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccccccccccccccccccccccc-------------------------------ccccccCCCCCCHHHHHHHcCCHHH
Confidence             69999999999999999999764                               3466889999999999999999999


Q ss_pred             HHHHHhCC
Q psy11714        181 INILLEYN  188 (272)
Q Consensus       181 ~~~Ll~~g  188 (272)
                      +++|+++|
T Consensus       149 v~~Ll~~G  156 (156)
T d1ihba_         149 VSLMQANG  156 (156)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhcC
Confidence            99999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.5e-24  Score=158.51  Aligned_cols=143  Identities=24%  Similarity=0.288  Sum_probs=108.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-------hhHHHHHH
Q psy11714         36 EKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAI  108 (272)
Q Consensus        36 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~t~l~~A~  108 (272)
                      .++|+.|+..|+.++++.||+.|      ++++ .|..|.||||+|+..++.++++.++......       .++++.++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~g------a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANG------APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT------CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcC------CCcc-cccCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            47788888888888888888887      6665 5778888888888888888888887765444       25777777


Q ss_pred             HcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy11714        109 KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYN  188 (272)
Q Consensus       109 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g  188 (272)
                      ...+.+++++++.+|++                                ++.+|..|.||||+|+..             
T Consensus        76 ~~~~~~~~~~l~~~~~~--------------------------------~~~~~~~g~T~L~~A~~~-------------  110 (153)
T d1awcb_          76 SEGHANIVEVLLKHGAD--------------------------------VNAKDMLKMTALHWATEH-------------  110 (153)
T ss_dssp             HHTCHHHHHHHHTTTCC--------------------------------TTCCCTTSCCHHHHHHHT-------------
T ss_pred             ccccceeeecccccCCc--------------------------------cccccccCchHHHhhhhc-------------
Confidence            77777777777776543                                335566677766666554             


Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy11714        189 IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKIL  258 (272)
Q Consensus       189 ~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  258 (272)
                                   |+.+++++|+++|++++               .+|..|.||||+|+.+|+.+++++|
T Consensus       111 -------------g~~~iv~~ll~~gad~~---------------~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         111 -------------NHQEVVELLIKYGADVH---------------TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -------------TCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -------------chhheeeeccccccCCc---------------ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                         45556666667777777               6788899999999999999999876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-23  Score=169.43  Aligned_cols=184  Identities=23%  Similarity=0.296  Sum_probs=133.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCChh--------hHHHHHHHcCcHHHHHHHHccccccccCC---------------
Q psy11714         74 NRSSLIAAIENENIELINILLEYNIQVK--------DALLHAIKEEYVEAVEILLEWEEKIHVHG---------------  130 (272)
Q Consensus        74 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~---------------  130 (272)
                      +.|+|++|+..|+.++|++|+++|++++        ||||+|+..|+.+++++|++++..+....               
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            4689999999999999999999999984        79999999999999999999888776210               


Q ss_pred             ------------CCccccCCcccHHHHHHhcCCCCc-------ccc----------ccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        131 ------------QPYVSENKGRTIFMMLDELKDQPE-------VFN----------INCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       131 ------------~~~~~~~~~~t~l~~~~~~~~~~~-------~~~----------~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                                  .....+..+.++++.++..+....       ..+          ....+..|.||||+|+.+|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence                        112233455566666555433211       011          122334577777877777777777


Q ss_pred             HHHHhC-CCCch-------hHHHH----HHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHc
Q psy11714        182 NILLEY-NIQVK-------DALLH----AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHM  249 (272)
Q Consensus       182 ~~Ll~~-g~~~~-------t~l~~----A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  249 (272)
                      ++|++. |++++       +++..    +...+..+++++|+++|++++               .++..|.||||+|+..
T Consensus       165 ~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n---------------~~~~~g~t~L~~a~~~  229 (285)
T d1wdya_         165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN---------------VRGERGKTPLILAVEK  229 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS---------------CCCTTSCCHHHHHHHT
T ss_pred             HHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC---------------ccCCCCCCccchhhhc
Confidence            777753 56651       22322    222334457777777777777               7788999999999999


Q ss_pred             CCHHHHHHHHHC-CCCCCCCCCCC
Q psy11714        250 NNYEILKILLDR-GATLPMPHDVR  272 (272)
Q Consensus       250 ~~~~iv~~Ll~~-ga~~~~~~~~~  272 (272)
                      ++.++|++|+++ |++++.+|.++
T Consensus       230 ~~~~~v~~lL~~~g~din~~d~~G  253 (285)
T d1wdya_         230 KHLGLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             TCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred             CcHHHHHHHHHcCCCCCcCCCCCC
Confidence            999999999985 99999988653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4e-23  Score=154.14  Aligned_cols=115  Identities=21%  Similarity=0.297  Sum_probs=102.8

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHH
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DAL  104 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l  104 (272)
                      ...+.++||+|+..++.+.+..++...      ...+..+..+.++++.++...+.+++++++.+|++++       |||
T Consensus        31 ~~~g~t~L~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L  104 (153)
T d1awcb_          31 DWLGTSPLHLAAQYGHFSTTEVLLRAG------VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL  104 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTT------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             ccCCCcccccccccccccccccccccc------ccccccccccccccccccccccceeeecccccCCccccccccCchHH
Confidence            445678999999999999999999886      5556667788899999999999999999999998883       899


Q ss_pred             HHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHH
Q psy11714        105 LHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL  184 (272)
Q Consensus       105 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~L  184 (272)
                      |+|+..|+.+++++|+++|+++                                +.+|..|.||||+|+.+|+.+++++|
T Consensus       105 ~~A~~~g~~~iv~~ll~~gad~--------------------------------~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         105 HWATEHNHQEVVELLIKYGADV--------------------------------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhcchhheeeeccccccCC--------------------------------cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999988654                                47889999999999999999999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=2.2e-23  Score=163.36  Aligned_cols=165  Identities=25%  Similarity=0.235  Sum_probs=145.4

Q ss_pred             HHHHHHHHHCCCChh--------hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc----
Q psy11714         87 IELINILLEYNIQVK--------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE----  154 (272)
Q Consensus        87 ~~~v~~Ll~~g~~~~--------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~----  154 (272)
                      .++|++|+++|++++        ||||+|+..|+.+++++|+++|++++      .++..+.++++.++.......    
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADAN------SQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc------ccccccccccccccccccccccccc
Confidence            589999999999994        79999999999999999999999998      678889999998887644322    


Q ss_pred             ----cccccCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCc
Q psy11714        155 ----VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQP  223 (272)
Q Consensus       155 ----~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  223 (272)
                          ..........+.++.+.+.........+.|...++++       .|+|++++..+...+++.+++++.+++     
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-----  150 (209)
T d1ot8a_          76 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-----  150 (209)
T ss_dssp             HTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-----
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc-----
Confidence                2333445567889999999999999999999999887       589999999999999999999999998     


Q ss_pred             chhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       224 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                                ..|..|.||||+|+..|+.++|++|+++|||++.+|..+
T Consensus       151 ----------~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g  189 (209)
T d1ot8a_         151 ----------AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMD  189 (209)
T ss_dssp             ----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ----------ccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCC
Confidence                      778899999999999999999999999999999998653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-24  Score=154.70  Aligned_cols=111  Identities=18%  Similarity=0.212  Sum_probs=99.7

Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      ++||+|+..|+.+++++|+++|+++                                +.++..|.||||+|+ .|+.+++
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~--------------------------------n~~~~~g~t~l~~a~-~g~~~~v   51 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANP--------------------------------NAPNSYGRRPIQVMM-MGSARVA   51 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCT--------------------------------TCCCSSSCCTTTSSC-TTCHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCcc--------------------------------ccccccccccccccc-ccccccc
Confidence            5789999999999999999987554                                467788999999775 7999999


Q ss_pred             HHHHhCCCCc--------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        182 NILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       182 ~~Ll~~g~~~--------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      ++|+++|+++        .+|||+|+..|+.+++++|+++|++++               .+|..|.||||+|+.+|+.+
T Consensus        52 ~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~---------------~~d~~G~T~l~~A~~~g~~~  116 (125)
T d1bi7b_          52 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---------------VRDAWGRLPVDLAEELGHRD  116 (125)
T ss_dssp             HHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS---------------CCCTTCCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc---------------cccCCCCCHHHHHHHcCCHH
Confidence            9999999888        369999999999999999999999999               78999999999999999999


Q ss_pred             HHHHHHH
Q psy11714        254 ILKILLD  260 (272)
Q Consensus       254 iv~~Ll~  260 (272)
                      ++++|++
T Consensus       117 ~v~~Lls  123 (125)
T d1bi7b_         117 VARYLRA  123 (125)
T ss_dssp             HHHHHSS
T ss_pred             HHHHHHh
Confidence            9999975

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.7e-24  Score=153.34  Aligned_cols=114  Identities=18%  Similarity=0.242  Sum_probs=103.9

Q ss_pred             hhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------hHHH
Q psy11714         34 PQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK--------DALL  105 (272)
Q Consensus        34 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------t~l~  105 (272)
                      +..+.||.|+..|+++++++|++.|      +++|.++..|.||||+|+ .|+.+++++|+++|++++        ||||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~g------ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAG------ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTT------CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcC------Cccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            3456799999999999999999987      999999999999999775 799999999999999883        5999


Q ss_pred             HHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy11714        106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL  185 (272)
Q Consensus       106 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll  185 (272)
                      +|+..|+.+++++|+++|++                                ++.+|..|.||||+|+.+|+.+++++|+
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~--------------------------------~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGAR--------------------------------LDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC--------------------------------SSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccccccc--------------------------------cccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999998755                                4578899999999999999999999997


Q ss_pred             h
Q psy11714        186 E  186 (272)
Q Consensus       186 ~  186 (272)
                      +
T Consensus       123 s  123 (125)
T d1bi7b_         123 A  123 (125)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.3e-23  Score=150.19  Aligned_cols=108  Identities=22%  Similarity=0.248  Sum_probs=95.4

Q ss_pred             hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL  180 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~  180 (272)
                      +|||++|+..|+.+++++|+++|+++                                +.+|..|.||||+|+..|+.++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~--------------------------------n~~~~~g~t~lh~A~~~~~~~~   50 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV--------------------------------NRTLEGGRKPLHYAADCGQLEI   50 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC--------------------------------CCCSSSSCCTTHHHHHHSTTTH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc--------------------------------cccccccccccccccccccccc
Confidence            58999999999999999999987654                                4778889999999999999999


Q ss_pred             HHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHH
Q psy11714        181 INILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE  253 (272)
Q Consensus       181 ~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  253 (272)
                      +++|+++|+++       .||||+|+..++.+++++|+++|++++               .+|..|.||||+|..    +
T Consensus        51 ~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~---------------~~d~~G~t~l~~a~~----~  111 (118)
T d1myoa_          51 LEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT---------------VKGPDGLTALEATDN----Q  111 (118)
T ss_dssp             HHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSS---------------SSSSSTCCCCCTCSS----T
T ss_pred             ccccccccceeeecccccccchhhhhhcCchhhhhhhhcccccce---------------eeCCCCCCHHHHHhH----H
Confidence            99999999988       599999999999999999999999999               789999999998842    3


Q ss_pred             HHHHHH
Q psy11714        254 ILKILL  259 (272)
Q Consensus       254 iv~~Ll  259 (272)
                      .++.||
T Consensus       112 ~i~~LL  117 (118)
T d1myoa_         112 AIKALL  117 (118)
T ss_dssp             TTGGGG
T ss_pred             HHHHhc
Confidence            455444

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.5e-22  Score=145.98  Aligned_cols=116  Identities=15%  Similarity=0.129  Sum_probs=100.7

Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      +.|+.|+..|+.+++++|+++|++                                ++.+|..|.||||+|+..|+.+++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d--------------------------------~n~~d~~g~t~Lh~A~~~~~~~~~   50 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD--------------------------------PSLPNDEGITALHNAVCAGHTEIV   50 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS--------------------------------CCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC--------------------------------cccccccccccccccccccccccc
Confidence            468999999999999999998755                                457888999999999999999999


Q ss_pred             HHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHH--HHcCCH
Q psy11714        182 NILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILA--AHMNNY  252 (272)
Q Consensus       182 ~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A--~~~~~~  252 (272)
                      ++|+++|+++       +||||+|+..|+.+++++|+++|++++.              ..+..+.||++++  +..|+.
T Consensus        51 ~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~--------------~~~~~~~~~~~~~~a~~~g~~  116 (130)
T d1ycsb1          51 KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA--------------MTYSDMQTAADKCEEMEEGYT  116 (130)
T ss_dssp             HHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------------CCSSSCCCHHHHCCSSSTTCC
T ss_pred             ccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCccc--------------ccCCCCCCHHHHHHHHHcChH
Confidence            9999999888       5999999999999999999999999983              2234578887765  577899


Q ss_pred             HHHHHHHHCCC
Q psy11714        253 EILKILLDRGA  263 (272)
Q Consensus       253 ~iv~~Ll~~ga  263 (272)
                      +++++|++.+.
T Consensus       117 eiv~~L~~~~~  127 (130)
T d1ycsb1         117 QCSQFLYGVQE  127 (130)
T ss_dssp             CHHHHHHHHHH
T ss_pred             HHHHHHHhHHH
Confidence            99999998654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.9e-21  Score=161.27  Aligned_cols=156  Identities=20%  Similarity=0.185  Sum_probs=101.1

Q ss_pred             CCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHHcCcH-------HHHHHHHccccccccC
Q psy11714         65 FNINCV-DPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIKEEYV-------EAVEILLEWEEKIHVH  129 (272)
Q Consensus        65 ~~~n~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~~~~~-------~~~~~Ll~~g~~~~~~  129 (272)
                      +++|.. |..|+||||+|+..|+.++|++|+++|++++       ||||.|+..++.       ++++++..        
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~--------  168 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--------  168 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--------
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh--------
Confidence            677765 8889999999999999999999999999883       799999876652       34444433        


Q ss_pred             CCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCC----H--------HHHHHHHhCCCCc------
Q psy11714        130 GQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN----I--------ELINILLEYNIQV------  191 (272)
Q Consensus       130 ~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~----~--------~~~~~Ll~~g~~~------  191 (272)
                                                 .+...|..|+||||.++..+.    .        .++.+++..+...      
T Consensus       169 ---------------------------~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  221 (301)
T d1sw6a_         169 ---------------------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN  221 (301)
T ss_dssp             ---------------------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred             ---------------------------hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccc
Confidence                                       233445566666666654322    2        2344555544333      


Q ss_pred             --hhHHHHHHHcCCHHHHH-----HHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy11714        192 --KDALLHAIKEEYVEAVE-----ILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT  264 (272)
Q Consensus       192 --~t~l~~A~~~~~~~~~~-----~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~iv~~Ll~~ga~  264 (272)
                        .++++.+........+.     .++..  .+|               .+|..|.||||+|++.|+.++|++|+++|||
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~in---------------~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd  284 (301)
T d1sw6a_         222 EKESKPNDKNGERKDSILENLDLKWIIAN--MLN---------------AQDSNGDTCLNIAARLGNISIVDALLDYGAD  284 (301)
T ss_dssp             --------------CHHHHHCSHHHHHHH--TTT---------------CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             cccchhHHHHhcchHHHHHHHhhHHHHhc--Ccc---------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence              23333333322222221     12221  133               7789999999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy11714        265 LPMPHDVR  272 (272)
Q Consensus       265 ~~~~~~~~  272 (272)
                      ++.+|..+
T Consensus       285 ~~~~n~~G  292 (301)
T d1sw6a_         285 PFIANKSG  292 (301)
T ss_dssp             TTCCCTTS
T ss_pred             CCCCCCCC
Confidence            99999754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.2e-21  Score=150.51  Aligned_cols=166  Identities=19%  Similarity=0.156  Sum_probs=140.2

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCh-----------
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-----------  100 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------  100 (272)
                      ...+.++|++|+..|+.++++.|++.+      ++.+..+..|.++++.|...++.++++.+.......           
T Consensus        37 d~~g~TpL~~A~~~~~~~iv~~Ll~~g------a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (228)
T d1k1aa_          37 NNLRQTPLHLAVITTLPSVVRLLVTAG------ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG  110 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred             CCCCCccceehhccccccccccccccc------ccccccccccccccccccccccccchhhhhhcccccccccccccccc
Confidence            345667899999999999999999997      899999999999999999999999998887654322           


Q ss_pred             hhHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCC-------ccccccCCCCCCCCHHHHHH
Q psy11714        101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQP-------EVFNINCVDPLNRSSLIAAI  173 (272)
Q Consensus       101 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-------~~~~~~~~d~~~~t~L~~a~  173 (272)
                      .++++.+.........+.|.....+...     .....+.++++.++......       .+..++.+|..|.||||+|+
T Consensus       111 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         111 LTALHVAVNTECQETVQLLLERGADIDA-----VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS  185 (228)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-----CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             ccccccccccccchhhhhhhcccccccc-----ccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHH
Confidence            3699999999999999988886654431     34567889999988764432       25778889999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHH
Q psy11714        174 ENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVE  208 (272)
Q Consensus       174 ~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~  208 (272)
                      ..|+.+++++|+++|+|+       .||||+|+..|+.++++
T Consensus       186 ~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999998       59999999999988874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.4e-22  Score=142.87  Aligned_cols=113  Identities=14%  Similarity=0.190  Sum_probs=98.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCChh-------hHHHHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVK-------DALLHAIK  109 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------t~l~~A~~  109 (272)
                      +.|+.|+..|+.++++.|++.|      +++|.+|..|+||||+|+..|+.+++++|+++|++++       ||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g------~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV------DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT------SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC------CCccccccccccccccccccccccccccccccccccccccccCcccccccch
Confidence            4589999999999999999997      9999999999999999999999999999999999884       89999999


Q ss_pred             cCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCC-CCCCCHHHHH--HHcCCHHHHHHHHh
Q psy11714        110 EEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD-PLNRSSLIAA--IENENIELINILLE  186 (272)
Q Consensus       110 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d-~~~~t~L~~a--~~~g~~~~~~~Ll~  186 (272)
                      .|+.+++++|+++|++++                                .++ ..+.|+++++  +..|+.+++++|++
T Consensus        77 ~g~~~~v~~Ll~~ga~v~--------------------------------~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVF--------------------------------AMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTT--------------------------------CCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCcc--------------------------------cccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            999999999999998776                                222 3466766554  56788899999986


Q ss_pred             C
Q psy11714        187 Y  187 (272)
Q Consensus       187 ~  187 (272)
                      .
T Consensus       125 ~  125 (130)
T d1ycsb1         125 V  125 (130)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.8e-20  Score=139.76  Aligned_cols=125  Identities=14%  Similarity=0.126  Sum_probs=106.0

Q ss_pred             HHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHc---CCHH
Q psy11714        103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN---ENIE  179 (272)
Q Consensus       103 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~---g~~~  179 (272)
                      .|..|+..++...+..++..|++++.                          .......+..|+||||+|+..   |..+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~--------------------------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~   62 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTE--------------------------KIPLANGHEPDETALHLAVRSVDRTSLH   62 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTS--------------------------BCCCSSCSSTTCBHHHHHHHHCCTTTHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCC--------------------------CCCcccCCCCCCchHHHHHHhcCCCCHH
Confidence            35677888888888888888877652                          122334466799999999974   6789


Q ss_pred             HHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCH
Q psy11714        180 LINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNY  252 (272)
Q Consensus       180 ~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~  252 (272)
                      ++++|+++|+++       +||||+|+..|+.+++++|+++|++++               .+|..|.||||+|+.+|+.
T Consensus        63 iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~---------------~~d~~g~tpL~~A~~~~~~  127 (154)
T d1dcqa1          63 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE---------------IANESGETPLDIAKRLKHE  127 (154)
T ss_dssp             HHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------------CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCCChhhhhhhhccccccccccccccccccccccCcccc---------------ccCCCCCCHHHHHHHcCCH
Confidence            999999999998       599999999999999999999999999               7899999999999999999


Q ss_pred             HHHHHHHHCCCCCCCC
Q psy11714        253 EILKILLDRGATLPMP  268 (272)
Q Consensus       253 ~iv~~Ll~~ga~~~~~  268 (272)
                      +++++|++.|+..-.+
T Consensus       128 ~i~~~L~~~~~~~~~~  143 (154)
T d1dcqa1         128 HCEELLTQALSGRFNS  143 (154)
T ss_dssp             HHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHhCCCCCCc
Confidence            9999999998854443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.6e-21  Score=139.19  Aligned_cols=93  Identities=22%  Similarity=0.240  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCC
Q psy11714        165 NRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT  237 (272)
Q Consensus       165 ~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (272)
                      ..|||++|+..|+.+++++|+++|+++       .||||+|+..++.+++++|+++|++++               .+|.
T Consensus         2 c~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din---------------~~d~   66 (118)
T d1myoa_           2 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN---------------APDK   66 (118)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT---------------CCSS
T ss_pred             CChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceee---------------eccc
Confidence            358999999999999999999999998       599999999999999999999999999               7889


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q psy11714        238 PDITPLILAAHMNNYEILKILLDRGATLPMPHDVR  272 (272)
Q Consensus       238 ~g~t~l~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  272 (272)
                      .|.||||+|+.+|+.+++++|+++|||++.+|..+
T Consensus        67 ~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G  101 (118)
T d1myoa_          67 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG  101 (118)
T ss_dssp             SCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSST
T ss_pred             ccccchhhhhhcCchhhhhhhhcccccceeeCCCC
Confidence            99999999999999999999999999999988653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.3e-20  Score=140.44  Aligned_cols=122  Identities=12%  Similarity=0.118  Sum_probs=100.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCChh-------hHHHH
Q psy11714         37 KRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIEN---ENIELINILLEYNIQVK-------DALLH  106 (272)
Q Consensus        37 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~-------t~l~~  106 (272)
                      ..|+.|+..+++..+..++..|............+..|.||||+|+..   ++.+++++|+++|++++       ||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            347889999999999999998722111122233367899999999975   67899999999999984       79999


Q ss_pred             HHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy11714        107 AIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE  186 (272)
Q Consensus       107 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~~~Ll~  186 (272)
                      |+..|+.+++++|+++|+++                                +.+|..|.||||+|+..|+.+++++|++
T Consensus        88 A~~~~~~~~v~~Ll~~gad~--------------------------------~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASI--------------------------------EIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT--------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccccCccc--------------------------------cccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999987654                                4778899999999999999999999998


Q ss_pred             CCCC
Q psy11714        187 YNIQ  190 (272)
Q Consensus       187 ~g~~  190 (272)
                      .++.
T Consensus       136 ~~~~  139 (154)
T d1dcqa1         136 ALSG  139 (154)
T ss_dssp             HHTT
T ss_pred             hCCC
Confidence            6544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=1.6e-21  Score=164.77  Aligned_cols=176  Identities=16%  Similarity=0.078  Sum_probs=130.3

Q ss_pred             cChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCC--CCCCcHHHHHHHcCCHHHHHHHHHCCCChh--------
Q psy11714         32 LTPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVD--PLNRSSLIAAIENENIELINILLEYNIQVK--------  101 (272)
Q Consensus        32 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------  101 (272)
                      ...+.++||+|+..|+.++|++|++.|      ++++..+  ..|.||||+|+..||.++|++|+++|++..        
T Consensus       123 ~~~g~taL~~Aa~~G~~~~v~~Ll~~g------~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~  196 (346)
T d2ajaa1         123 QAENYQAFRLAAENGHLHVLNRLCELA------PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN  196 (346)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSC------TTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcC------CCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCC
Confidence            345678999999999999999999997      7887765  458999999999999999999999997651        


Q ss_pred             --hHHHHHHHcCcHHHHHHHHccccccccCCCC-ccccCCcccHHHHHHhcCCC---------CccccccCCCC------
Q psy11714        102 --DALLHAIKEEYVEAVEILLEWEEKIHVHGQP-YVSENKGRTIFMMLDELKDQ---------PEVFNINCVDP------  163 (272)
Q Consensus       102 --t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~~~~~~~t~l~~~~~~~~~---------~~~~~~~~~d~------  163 (272)
                        ||++.|+..|+.+++++|+++|++++..... ......+.++++........         ......+..+.      
T Consensus       197 ~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~  276 (346)
T d2ajaa1         197 YYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG  276 (346)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHH
T ss_pred             CcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhccccccc
Confidence              4778888999999999999999987621100 01122334555443332110         00011111211      


Q ss_pred             -CCCCHHHHHHHcCCHHHHHHHHhCCCCc------------hhHHHHHHHcCCHHHHHHHHhc
Q psy11714        164 -LNRSSLIAAIENENIELINILLEYNIQV------------KDALLHAIKEEYVEAVEILLEW  213 (272)
Q Consensus       164 -~~~t~L~~a~~~g~~~~~~~Ll~~g~~~------------~t~l~~A~~~~~~~~~~~Ll~~  213 (272)
                       .+.++++.++..|..+++++|++.+...            +||||+|+..|+.+++++|++.
T Consensus       277 ~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         277 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             chhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence             2346788888899999999999876532            5999999999999999999974

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.2e-20  Score=136.28  Aligned_cols=122  Identities=16%  Similarity=0.224  Sum_probs=109.7

Q ss_pred             hHHHHHHHcCcHHHHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCccccccCCCCCCCCHHHHHHHcCCHHHH
Q psy11714        102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI  181 (272)
Q Consensus       102 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~d~~~~t~L~~a~~~g~~~~~  181 (272)
                      .+|+.|+..|+.++|+.|++.+                               +.+++.+|..|.||||+|+ .|+.+++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~-------------------------------~~~~n~~d~~g~t~L~~A~-~~~~~~v   51 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE-------------------------------LVHPDALNRFGKTALQVMM-FGSTAIA   51 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT-------------------------------CCCTTCCCTTSCCHHHHSC-TTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC-------------------------------CCCCCccCCCCCccccccc-ccccccc
Confidence            4699999999999999999752                               2456788999999999987 5889999


Q ss_pred             HHHHhCCCCc-------hhHHHHHHHcCCHHHHHHHHhcCccCCCCCCcchhhhhhcCCCCCCCCCcHHHHHHHcCCHHH
Q psy11714        182 NILLEYNIQV-------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEI  254 (272)
Q Consensus       182 ~~Ll~~g~~~-------~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~i  254 (272)
                      ++|++.++++       .+|++.++..++.+++++++++|++++               .++..|.||||+|+..|+.++
T Consensus        52 ~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n---------------~~~~~~~t~L~~A~~~~~~~i  116 (156)
T d1bd8a_          52 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---------------VPDGTGALPIHLAVQEGHTAV  116 (156)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC---------------CCCTTSCCHHHHHHHHTCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc---------------cccCCCCeeeccccccccccc
Confidence            9999999988       489999999999999999999999998               778899999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCC
Q psy11714        255 LKILLDRGATLPMPHDV  271 (272)
Q Consensus       255 v~~Ll~~ga~~~~~~~~  271 (272)
                      +++|+ .|++++.++..
T Consensus       117 ~~~L~-~~~~~~~~d~~  132 (156)
T d1bd8a_         117 VSFLA-AESDLHRRDAR  132 (156)
T ss_dssp             HHHHH-TTSCTTCCCTT
T ss_pred             ccccc-ccccccccCCC
Confidence            99888 79999998865

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=4.4e-19  Score=146.80  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=104.2

Q ss_pred             ChhhhHHHHHHHcCCHHHHHHHHHccCCCCCCCCcccCCCCCCcHHHHHHHcCC-------HHHHHHHHHCCCCh----h
Q psy11714         33 TPQEKRFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN-------IELINILLEYNIQV----K  101 (272)
Q Consensus        33 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~n~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~----~  101 (272)
                      ..+.++||+|+..|+.++++.|++.|      ++++.+|..|+||||.|+..++       .++++++.......    +
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~g------ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~  178 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHG------SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR  178 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTT------CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCC------CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccC
Confidence            34568899999999999999999997      9999999999999999998764       35566655432222    4


Q ss_pred             hHHHHHHHcCc----HH--------HHHHHHccccccccCCCCccccCCcccHHHHHHhcCCCCc----------ccccc
Q psy11714        102 DALLHAIKEEY----VE--------AVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE----------VFNIN  159 (272)
Q Consensus       102 t~l~~A~~~~~----~~--------~~~~Ll~~g~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~----------~~~~~  159 (272)
                      ||||+++..+.    ..        ++.+++..+.....     .......++++..........          ...+|
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ-----SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEE-----EC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchh-----cccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence            79998875443    22        33445554433221     112233333333222211100          12378


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------hhHHHHHH
Q psy11714        160 CVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAI  199 (272)
Q Consensus       160 ~~d~~~~t~L~~a~~~g~~~~~~~Ll~~g~~~-------~t~l~~A~  199 (272)
                      .+|..|+||||+|++.|+.+++++|+++|+++       .|||++|+
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            89999999999999999999999999999988       48998874