Psyllid ID: psy1172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYLGTYV
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccccccEEEEccccHHHHHcccccccccccccccEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccEEEEcccccHHHHHcccccccccEEEccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEcccccccHHHHHHHHHHHcccHHHHHcccEEEEEEccccccHHHHHHHHHHHccccccccccccccccHHHHHccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccccccccccEEEccccHHHHHcccccccccccccccccccEEEEEccccEEEEEEEccccEcccHHHHHHHHHHHHHHHHHcEEEcccccccccEEEcccccHHHHHHHcccccccEEEEEccccccEEEEEcccccccccccccccccHHccccccccEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHccccccccEEEcccccc
Coil and Loop (DISEMBL)
mflqdiqsysscgegdgklpypiiadqDRSLAVQLgmldpvekdskgmpltcravfiidpakklrlsflypattgrnFDEILRVLDslqltdtkkvatpvdwkvgmeievrpglvskdsegkltckpIFSRIVSLFAEQNelqfavpgGLIDRFAAAllpgcsllgCQASLVILEcsipafwgilfshpsdftpvCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINlsvddfkevegrSRRFQESLNtygylgtyv
Flexible Loop (DISEMBL)
MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDpvekdskgmpLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLdslqltdtkkvatpvdwkvgmeievrpglvskdsegkltCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVddfkevegrsrrfqeslntygylgtyv
Low Complexity Region (SEG)
MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYLGTYV
Disordered region (IsUnstruct)
******************LPYPIIADQDRSLAVQLGMLDPVE**SKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYLG***
Disordered Region (DISOPRED)
MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNE******GGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYLGTYV
Disordered Region (DISEMBL)
MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYLGTYV
Disordered Region (DISPRO)
MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYLGTYV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYLGTYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q5ZJF4	224	Peroxiredoxin-6 OS=Gallus	yes	N/A	0.445	0.549	0.618	2e-35
O35244	224	Peroxiredoxin-6 OS=Rattus	yes	N/A	0.456	0.562	0.585	3e-35
O77834	224	Peroxiredoxin-6 OS=Bos ta	yes	N/A	0.456	0.562	0.593	7e-35
P30041	224	Peroxiredoxin-6 OS=Homo s	yes	N/A	0.456	0.562	0.585	2e-34
Q5R7E0	224	Peroxiredoxin-6 OS=Pongo	yes	N/A	0.456	0.562	0.585	5e-34
Q2PFL9	224	Peroxiredoxin-6 OS=Macaca	N/A	N/A	0.456	0.562	0.578	6e-34
Q9TSX9	224	Peroxiredoxin-6 OS=Sus sc	yes	N/A	0.456	0.562	0.578	9e-34
O08709	224	Peroxiredoxin-6 OS=Mus mu	yes	N/A	0.420	0.517	0.615	3e-33
P52570	232	Putative peroxiredoxin OS	N/A	N/A	0.387	0.461	0.651	4e-31
O17433	235	1-Cys peroxiredoxin OS=Di	N/A	N/A	0.394	0.463	0.612	1e-30

>sp|Q5ZJF4|PRDX6_CHICK Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=3

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 98/131 (74%), Gaps = 8/131 (6%)

Query: 4   QDIQSYSSCGEGDG---KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDP 60
           +DI +Y+    GD    KLP+PIIAD+DR LAV+LGMLDP E+D  GMPLT R VFI  P
Sbjct: 83  KDINAYN----GDQPVEKLPFPIIADKDRELAVKLGMLDPDERDKDGMPLTARVVFIFGP 138

Query: 61  AKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
            KKL+LS LYPATTGRNFDEILRV+DSLQLT  KKVATPVDWK G  + V P L  ++++
Sbjct: 139 DKKLKLSILYPATTGRNFDEILRVVDSLQLTAYKKVATPVDWKCGDSVMVVPTLPDEEAK 198

Query: 121 GKLTCKPIFSR 131
            KL  K +F++
Sbjct: 199 -KLFPKGVFTK 208

Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|O35244|PRDX6_RAT Peroxiredoxin-6 OS=Rattus norvegicus GN=Prdx6 PE=1 SV=3

 Score =  148 bits (374), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 95/128 (74%), Gaps = 2/128 (1%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI +Y+     + KLP+PII D+DR LA+ LGMLDP EKD KGMP+T R VFI  P KK
Sbjct: 84  KDINAYNGAAPTE-KLPFPIIDDKDRDLAILLGMLDPAEKDEKGMPVTARVVFIFGPDKK 142

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           L+LS LYPATTGRNFDEILRV+DSLQLT +  VATPVDWK G  + V P L  ++++ +L
Sbjct: 143 LKLSILYPATTGRNFDEILRVVDSLQLTASNPVATPVDWKKGESVMVLPTLPEEEAK-QL 201

Query: 124 TCKPIFSR 131
             K +F++
Sbjct: 202 FPKGVFTK 209

Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|O77834|PRDX6_BOVIN Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3

 Score =  147 bits (371), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 76/128 (59%), Positives = 96/128 (75%), Gaps = 2/128 (1%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI +Y+   E   KLP+PII D++R LA+QLGMLDP EKD KGMP+T R VFI  P KK
Sbjct: 84  KDINAYNGE-EPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDEKGMPVTARVVFIFGPDKK 142

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct: 143 LKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPTIPEEEAK-KL 201

Query: 124 TCKPIFSR 131
             K +F++
Sbjct: 202 FPKGVFTK 209

Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|P30041|PRDX6_HUMAN Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 96/128 (75%), Gaps = 2/128 (1%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI +Y+ C E   KLP+PII D++R LA+ LGMLDP EKD KGMP+T R VF+  P KK
Sbjct: 84  KDINAYN-CEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKK 142

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct: 143 LKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK-KL 201

Query: 124 TCKPIFSR 131
             K +F++
Sbjct: 202 FPKGVFTK 209

Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q5R7E0|PRDX6_PONAB Peroxiredoxin-6 OS=Pongo abelii GN=PRDX6 PE=2 SV=3

 Score =  144 bits (364), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 95/128 (74%), Gaps = 2/128 (1%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI +Y+ C E   KLP+PII D++R LA+ LGMLDP EKD KGMP T R VF+  P KK
Sbjct: 84  KDINAYN-CEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPGTARVVFVFGPDKK 142

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct: 143 LKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK-KL 201

Query: 124 TCKPIFSR 131
             K +F++
Sbjct: 202 FPKGVFTK 209

Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q2PFL9|PRDX6_MACFA Peroxiredoxin-6 OS=Macaca fascicularis GN=PRDX6 PE=2 SV=3

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 95/128 (74%), Gaps = 2/128 (1%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +D  +Y+ C E   KLP+PII D++R LA+ LGMLDP EKD KGMP+T R VF+  P KK
Sbjct: 84  KDTNAYN-CEEPTEKLPFPIIDDKNRDLAILLGMLDPAEKDEKGMPVTARVVFVFGPDKK 142

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct: 143 LKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK-KL 201

Query: 124 TCKPIFSR 131
             K +F++
Sbjct: 202 FPKGVFTK 209

Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9TSX9|PRDX6_PIG Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3

 Score =  144 bits (362), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 94/128 (73%), Gaps = 2/128 (1%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI +Y+   E    LP+PII D+ R LA+QLGMLDP EKD +GMP+T R VFI  P KK
Sbjct: 84  KDINAYNGE-EPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQGMPVTARVVFIFGPDKK 142

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct: 143 LKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPNIPEEEAK-KL 201

Query: 124 TCKPIFSR 131
             K +F++
Sbjct: 202 FPKGVFTK 209

Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|O08709|PRDX6_MOUSE Peroxiredoxin-6 OS=Mus musculus GN=Prdx6 PE=1 SV=3

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 87/117 (74%), Gaps = 1/117 (0%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI +Y+     + KLP+PII D+ R LA+ LGMLDPVEKD   MP+T R VFI  P KK
Sbjct: 84  KDINAYNGETPTE-KLPFPIIDDKGRDLAILLGMLDPVEKDDNNMPVTARVVFIFGPDKK 142

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
           L+LS LYPATTGRNFDEILRV+DSLQLT TK VATPVDWK G  + V P L  ++++
Sbjct: 143 LKLSILYPATTGRNFDEILRVVDSLQLTGTKPVATPVDWKKGESVMVVPTLSEEEAK 199

Involved in redox regulation of the cell. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. May play a role in the regulation of phospholipid turnover as well as in protection against oxidative injury.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|P52570|TSA_ONCVO Putative peroxiredoxin OS=Onchocerca volvulus GN=TSA PE=2 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 82/109 (75%), Gaps = 2/109 (1%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
           + + KLPYPIIAD+DRSLA +LGM+DP E+D KG  LT R VFII   K L+LS LYPAT
Sbjct: 100 DSEKKLPYPIIADEDRSLATELGMMDPDERDEKGNTLTARCVFIIGSDKTLKLSILYPAT 159

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGK 122
           TGRNFDEILRV+DSLQLT  K VATPVDWK G +  V P +   D+E K
Sbjct: 160 TGRNFDEILRVVDSLQLTAVKLVATPVDWKDGDDCVVLPTI--DDNEAK 206

Onchocerca volvulus (taxid: 6282)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|O17433|1CPX_DIRIM 1-Cys peroxiredoxin OS=Dirofilaria immitis PE=2 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 83/116 (71%), Gaps = 7/116 (6%)

Query: 12  CGEGD-----GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRL 66
           C +GD      KLP+PIIAD++R LA +LGM+DP E+D  G  LT R VFII P K L+L
Sbjct: 96  CNDGDTCCSGNKLPFPIIADENRFLATELGMMDPDERDENGNALTARCVFIIGPEKTLKL 155

Query: 67  SFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGK 122
           S LYPATTGRNFDEILRV+DSLQLT  K VATPVDWK G +  V P +   D+E K
Sbjct: 156 SILYPATTGRNFDEILRVVDSLQLTAVKLVATPVDWKDGDDCVVLPTI--DDTEAK 209

Thiol specific antioxidant.

Dirofilaria immitis (taxid: 6287)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
242007539	221	Peroxiredoxin-6, putative [Pediculus hum	0.416	0.520	0.683	1e-36
66521517	220	PREDICTED: peroxiredoxin-6 [Apis mellife	0.431	0.540	0.622	2e-36
380022894	220	PREDICTED: peroxiredoxin-6-like [Apis fl	0.431	0.540	0.614	5e-36
195999072	219	hypothetical protein TRIADDRAFT_49888 [T	0.413	0.520	0.658	2e-35
156401378	224	predicted protein [Nematostella vectensi	0.510	0.629	0.572	8e-35
327270253	224	PREDICTED: peroxiredoxin-6-like [Anolis	0.420	0.517	0.658	1e-34
340722645	220	PREDICTED: peroxiredoxin-6-like [Bombus	0.423	0.531	0.603	1e-34
307197293	222	Peroxiredoxin-6 [Harpegnathos saltator]	0.427	0.531	0.591	2e-34
357609745	223	1-Cys peroxiredoxin [Danaus plexippus]	0.398	0.493	0.693	2e-34
114051564	223	glutathione peroxidase [Bombyx mori] gi|	0.5	0.618	0.570	2e-34

>gi|242007539|ref|XP_002424597.1| Peroxiredoxin-6, putative [Pediculus humanus corporis] gi|212508040|gb|EEB11859.1| Peroxiredoxin-6, putative [Pediculus humanus corporis]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 92/117 (78%), Gaps = 2/117 (1%)

Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           +++DI S SS  EG  K PYPII+D +R LAV+LGMLDP EKDS G+PLTCRAVFIIDP 
Sbjct: 80  WIKDILSCSSFSEG--KFPYPIISDPNRELAVKLGMLDPDEKDSSGLPLTCRAVFIIDPK 137

Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKD 118
           KKLRLS LYPATTGRNF E+LRV+DSL LTD  KVATPVDWK G +  + P +  KD
Sbjct: 138 KKLRLSILYPATTGRNFKEVLRVIDSLMLTDNNKVATPVDWKNGDDCMILPSIPQKD 194

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66521517|ref|XP_395319.2| PREDICTED: peroxiredoxin-6 [Apis mellifera]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 98/122 (80%), Gaps = 3/122 (2%)

Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           +++DI++Y+  G  D + PYPII D+ R LA  LGMLDP+E D+ G+P+T RAVFIIDPA
Sbjct: 79  WIEDIKAYA--GMTDKEFPYPIIEDETRKLATLLGMLDPLEVDNNGIPMTARAVFIIDPA 136

Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEG 121
           KK+RLS LYPATTGRNFDEILRV++SLQLT+  KVATPVDWK+G E+ ++P +VS +   
Sbjct: 137 KKMRLSILYPATTGRNFDEILRVIESLQLTEKHKVATPVDWKIGEEVMIQP-IVSDEEAK 195

Query: 122 KL 123
           KL
Sbjct: 196 KL 197

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022894|ref|XP_003695270.1| PREDICTED: peroxiredoxin-6-like [Apis florea]

 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 97/122 (79%), Gaps = 3/122 (2%)

Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           +++DI++Y+     D + PYPII D+ R LA  LGMLDP+E D+ G+P+T RAVFIIDPA
Sbjct: 79  WIEDIKAYAEVT--DKEFPYPIIEDETRKLATLLGMLDPLEVDNNGIPMTARAVFIIDPA 136

Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEG 121
           KK+RLS LYPATTGRNFDEILRV++SLQLT+  KVATPVDWK+G E+ ++P +VS +   
Sbjct: 137 KKMRLSILYPATTGRNFDEILRVIESLQLTEKHKVATPVDWKIGEEVMIQP-IVSDEEAK 195

Query: 122 KL 123
           KL
Sbjct: 196 KL 197

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195999072|ref|XP_002109404.1| hypothetical protein TRIADDRAFT_49888 [Trichoplax adhaerens] gi|190587528|gb|EDV27570.1| hypothetical protein TRIADDRAFT_49888 [Trichoplax adhaerens]

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 94/117 (80%), Gaps = 3/117 (2%)

Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           +++DI++YSS     G+ P+PIIAD+ R LAVQLGMLDP EKDS G+PLTCRAVFI+D  
Sbjct: 79  WIKDIEAYSSLS---GQFPFPIIADEKRELAVQLGMLDPDEKDSAGLPLTCRAVFIVDQN 135

Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKD 118
            KL+LS LYPATTGRNFDEILRV+DSL+LT  KKVATPVDWK G +  V P + ++D
Sbjct: 136 AKLKLSLLYPATTGRNFDEILRVVDSLKLTVEKKVATPVDWKAGDKCMVIPSVKAED 192

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|156401378|ref|XP_001639268.1| predicted protein [Nematostella vectensis] gi|156226395|gb|EDO47205.1| predicted protein [Nematostella vectensis]

 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/145 (57%), Positives = 105/145 (72%), Gaps = 4/145 (2%)

Query: 2   FLQDIQSYS-SCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDP 60
           +++DI  Y+    +   K  YPIIAD+ R LAV+LGM+DP EKDSKG+PLTCRAVFII P
Sbjct: 79  WVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGLPLTCRAVFIIGP 138

Query: 61  AKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
            KKL+LS LYPATTGRNFDEILRV+DSLQLT TKKVATPVDWK+G +  V P  +  + E
Sbjct: 139 DKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDCMVIPS-IKPEEE 197

Query: 121 GKLTCKPIFSRIVSLFAEQNELQFA 145
           G +  K +  R + L + +  L++ 
Sbjct: 198 GTIFPKGV--RALDLPSGKRYLRYT 220

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|327270253|ref|XP_003219904.1| PREDICTED: peroxiredoxin-6-like [Anolis carolinensis]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 90/117 (76%), Gaps = 1/117 (0%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI +Y+   E   KLP+PIIAD  R LAVQLGMLDP EKD  G+PLT R VF+  P KK
Sbjct: 83  KDINAYNG-DEATEKLPFPIIADSKRELAVQLGMLDPDEKDKDGIPLTARVVFVFGPDKK 141

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
           L+LS LYPATTGRNFDEILRV+DSLQLT TKKVATPVDWK G E+ V P L  ++++
Sbjct: 142 LKLSILYPATTGRNFDEILRVVDSLQLTATKKVATPVDWKPGNEVMVIPSLPDEEAK 198

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340722645|ref|XP_003399714.1| PREDICTED: peroxiredoxin-6-like [Bombus terrestris]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 93/121 (76%), Gaps = 4/121 (3%)

Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           +++DI++Y+     D + PYPII D+ R LA  LGMLDP E D +G+P+T RAVFIIDPA
Sbjct: 79  WIEDIKAYAEMT--DEEFPYPIIEDETRKLATLLGMLDPAEVDDRGIPMTARAVFIIDPA 136

Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEG 121
           KK+RLS LYPATTGRNFDEILRV++SLQLT+  KVATPVDWK G ++ ++P +   D E 
Sbjct: 137 KKMRLSILYPATTGRNFDEILRVIESLQLTEKHKVATPVDWKAGDQVMIQPTV--SDEEA 194

Query: 122 K 122
           K
Sbjct: 195 K 195

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197293|gb|EFN78585.1| Peroxiredoxin-6 [Harpegnathos saltator]

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 94/120 (78%), Gaps = 2/120 (1%)

Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           +++DI+SY      D + PYPII DQ R LA  LGMLDP+E DS+G+P++ RAVFIIDPA
Sbjct: 79  WIEDIKSYGEIT--DQEFPYPIIEDQTRKLATLLGMLDPMEMDSQGLPMSARAVFIIDPA 136

Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEG 121
           KK+RLS LYPATTGRNFDEI+RV++SLQLT+  KVATPVDWK G ++ ++P +   +++ 
Sbjct: 137 KKMRLSILYPATTGRNFDEIIRVIESLQLTEKYKVATPVDWKKGDDVMIQPDVSENEAKA 196

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609745|gb|EHJ66630.1| 1-Cys peroxiredoxin [Danaus plexippus]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 87/111 (78%), Gaps = 1/111 (0%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI+SY+ C E D K PYPII DQDRSLA  LGM+D  E D KG+PLT RAVFIID  KK
Sbjct: 81  KDIKSYAGCNE-DEKFPYPIIEDQDRSLAKSLGMVDKDELDQKGLPLTARAVFIIDVNKK 139

Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGL 114
            RLS LYPATTGRNFDEILRV+DSLQLTD  KVATPV+WK+G +  V P +
Sbjct: 140 FRLSLLYPATTGRNFDEILRVIDSLQLTDKAKVATPVNWKMGDDCMVLPTI 190

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051564|ref|NP_001040104.1| glutathione peroxidase [Bombyx mori] gi|87248073|gb|ABD36089.1| glutathione peroxidase [Bombyx mori]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           + +DI+S++ C E D   PYPII D+ R LA +LGM+D  E D KGMPLT RAVFI+DP 
Sbjct: 79  WCKDIKSFAGCNE-DEPFPYPIIEDEKRELANKLGMIDNDEWDHKGMPLTARAVFIVDPN 137

Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEG 121
           KK RLS LYPATTGRNFDEILR+LDSLQLTD  KVATPVDWK G +  V P +     + 
Sbjct: 138 KKFRLSILYPATTGRNFDEILRILDSLQLTDKAKVATPVDWKAGDDCMVLPTVPEDQIK- 196

Query: 122 KLTCKPIFSRIVSLFAEQNELQ 143
             TC P    +V L + +N L+
Sbjct: 197 --TCFPQGVNVVPLPSGKNYLR 216

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
UNIPROTKB|F1NBV0	224	PRDX6 "Peroxiredoxin-6" [Gallu	0.456	0.562	0.617	5.1e-35
UNIPROTKB|F1NBV1	227	PRDX6 "Peroxiredoxin-6" [Gallu	0.456	0.555	0.617	5.1e-35
UNIPROTKB|Q5ZJF4	224	PRDX6 "Peroxiredoxin-6" [Gallu	0.456	0.562	0.617	5.1e-35
RGD|71005	224	Prdx6 "peroxiredoxin 6" [Rattu	0.456	0.562	0.585	2.8e-34
UNIPROTKB|O77834	224	PRDX6 "Peroxiredoxin-6" [Bos t	0.456	0.562	0.593	3.6e-34
UNIPROTKB|P30041	224	PRDX6 "Peroxiredoxin-6" [Homo	0.456	0.562	0.585	3.6e-34
UNIPROTKB|Q2PFL9	224	PRDX6 "Peroxiredoxin-6" [Macac	0.456	0.562	0.578	1.2e-33
UNIPROTKB|Q5R7E0	224	PRDX6 "Peroxiredoxin-6" [Pongo	0.456	0.562	0.585	1.2e-33
UNIPROTKB|Q9TSX9	224	PRDX6 "Peroxiredoxin-6" [Sus s	0.456	0.562	0.578	3.2e-33
UNIPROTKB|F1PC59	221	PRDX6 "Uncharacterized protein	0.456	0.570	0.585	3.2e-33

UNIPROTKB|F1NBV0 PRDX6 "Peroxiredoxin-6" [Gallus gallus (taxid:9031)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/128 (61%), Positives = 97/128 (75%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+   +   KLP+PIIAD+DR LAV+LGMLDP E+D  GMPLT R VFI  P KK
Sbjct:    83 KDINAYNG-DQPVEKLPFPIIADKDRELAVKLGMLDPDERDKDGMPLTARVVFIFGPDKK 141

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+DSLQLT  KKVATPVDWK G  + V P L  ++++ KL
Sbjct:   142 LKLSILYPATTGRNFDEILRVVDSLQLTAYKKVATPVDWKCGDSVMVVPTLPDEEAK-KL 200

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   201 FPKGVFTK 208

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0004623 "phospholipase A2 activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

UNIPROTKB|F1NBV1 PRDX6 "Peroxiredoxin-6" [Gallus gallus (taxid:9031)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/128 (61%), Positives = 97/128 (75%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+   +   KLP+PIIAD+DR LAV+LGMLDP E+D  GMPLT R VFI  P KK
Sbjct:    86 KDINAYNG-DQPVEKLPFPIIADKDRELAVKLGMLDPDERDKDGMPLTARVVFIFGPDKK 144

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+DSLQLT  KKVATPVDWK G  + V P L  ++++ KL
Sbjct:   145 LKLSILYPATTGRNFDEILRVVDSLQLTAYKKVATPVDWKCGDSVMVVPTLPDEEAK-KL 203

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   204 FPKGVFTK 211

GO:0016209 "antioxidant activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0004623 "phospholipase A2 activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

UNIPROTKB|Q5ZJF4 PRDX6 "Peroxiredoxin-6" [Gallus gallus (taxid:9031)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/128 (61%), Positives = 97/128 (75%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+   +   KLP+PIIAD+DR LAV+LGMLDP E+D  GMPLT R VFI  P KK
Sbjct:    83 KDINAYNG-DQPVEKLPFPIIADKDRELAVKLGMLDPDERDKDGMPLTARVVFIFGPDKK 141

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+DSLQLT  KKVATPVDWK G  + V P L  ++++ KL
Sbjct:   142 LKLSILYPATTGRNFDEILRVVDSLQLTAYKKVATPVDWKCGDSVMVVPTLPDEEAK-KL 200

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   201 FPKGVFTK 208

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

RGD|71005 Prdx6 "peroxiredoxin 6" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 75/128 (58%), Positives = 95/128 (74%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+     + KLP+PII D+DR LA+ LGMLDP EKD KGMP+T R VFI  P KK
Sbjct:    84 KDINAYNGAAPTE-KLPFPIIDDKDRDLAILLGMLDPAEKDEKGMPVTARVVFIFGPDKK 142

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+DSLQLT +  VATPVDWK G  + V P L  ++++ +L
Sbjct:   143 LKLSILYPATTGRNFDEILRVVDSLQLTASNPVATPVDWKKGESVMVLPTLPEEEAK-QL 201

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   202 FPKGVFTK 209

GO:0000302 "response to reactive oxygen species" evidence=ISO

GO:0004601 "peroxidase activity" evidence=ISO

GO:0004602 "glutathione peroxidase activity" evidence=IDA

GO:0004623 "phospholipase A2 activity" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005764 "lysosome" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0009395 "phospholipid catabolic process" evidence=IEA;ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0032060 "bleb assembly" evidence=ISO

GO:0042744 "hydrogen peroxide catabolic process" evidence=IDA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|O77834 PRDX6 "Peroxiredoxin-6" [Bos taurus (taxid:9913)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 76/128 (59%), Positives = 96/128 (75%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+   E   KLP+PII D++R LA+QLGMLDP EKD KGMP+T R VFI  P KK
Sbjct:    84 KDINAYNG-EEPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDEKGMPVTARVVFIFGPDKK 142

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct:   143 LKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPTIPEEEAK-KL 201

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   202 FPKGVFTK 209

GO:0000302 "response to reactive oxygen species" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0004623 "phospholipase A2 activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0004602 "glutathione peroxidase activity" evidence=IEA

UNIPROTKB|P30041 PRDX6 "Peroxiredoxin-6" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 75/128 (58%), Positives = 96/128 (75%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+ C E   KLP+PII D++R LA+ LGMLDP EKD KGMP+T R VF+  P KK
Sbjct:    84 KDINAYN-CEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKK 142

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct:   143 LKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK-KL 201

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   202 FPKGVFTK 209

GO:0004602 "glutathione peroxidase activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005829 "cytosol" evidence=NAS

GO:0004623 "phospholipase A2 activity" evidence=IDA

GO:0009395 "phospholipid catabolic process" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0016209 "antioxidant activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2PFL9 PRDX6 "Peroxiredoxin-6" [Macaca fascicularis (taxid:9541)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 74/128 (57%), Positives = 95/128 (74%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +D  +Y+ C E   KLP+PII D++R LA+ LGMLDP EKD KGMP+T R VF+  P KK
Sbjct:    84 KDTNAYN-CEEPTEKLPFPIIDDKNRDLAILLGMLDPAEKDEKGMPVTARVVFVFGPDKK 142

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct:   143 LKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK-KL 201

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   202 FPKGVFTK 209

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|Q5R7E0 PRDX6 "Peroxiredoxin-6" [Pongo abelii (taxid:9601)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 75/128 (58%), Positives = 95/128 (74%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+ C E   KLP+PII D++R LA+ LGMLDP EKD KGMP T R VF+  P KK
Sbjct:    84 KDINAYN-CEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPGTARVVFVFGPDKK 142

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct:   143 LKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK-KL 201

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   202 FPKGVFTK 209

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|Q9TSX9 PRDX6 "Peroxiredoxin-6" [Sus scrofa (taxid:9823)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 74/128 (57%), Positives = 94/128 (73%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+   E    LP+PII D+ R LA+QLGMLDP EKD +GMP+T R VFI  P KK
Sbjct:    84 KDINAYNG-EEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQGMPVTARVVFIFGPDKK 142

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct:   143 LKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPNIPEEEAK-KL 201

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   202 FPKGVFTK 209

GO:0005737 "cytoplasm" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004623 "phospholipase A2 activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0004602 "glutathione peroxidase activity" evidence=IEA

UNIPROTKB|F1PC59 PRDX6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 75/128 (58%), Positives = 92/128 (71%)

Query:     4 QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
             +DI +Y+   E    LP+PII D++R LA+ LGMLDP EKD KGMP+T R VFI  P KK
Sbjct:    81 KDINAYNG-QEPTETLPFPIIDDKNRDLAILLGMLDPAEKDEKGMPVTARVVFIFGPDKK 139

Query:    64 LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
             L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P  + +D   KL
Sbjct:   140 LKLSILYPATTGRNFDEILRVITSLQLTAEKRVATPVDWKDGDSVMVLP-TIPEDEAKKL 198

Query:   124 TCKPIFSR 131
               K +F++
Sbjct:   199 FPKGVFTK 206

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004623 "phospholipase A2 activity" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R7E0	PRDX6_PONAB	1, ., 1, 1, ., 1, ., 9	0.5859	0.4565	0.5625	yes	N/A
O08709	PRDX6_MOUSE	1, ., 1, 1, ., 1, ., 9	0.6153	0.4202	0.5178	yes	N/A
O35244	PRDX6_RAT	1, ., 1, 1, ., 1, ., 9	0.5859	0.4565	0.5625	yes	N/A
Q9TSX9	PRDX6_PIG	1, ., 1, 1, ., 1, ., 9	0.5781	0.4565	0.5625	yes	N/A
P30041	PRDX6_HUMAN	1, ., 1, 1, ., 1, ., 9	0.5859	0.4565	0.5625	yes	N/A
Q5ZJF4	PRDX6_CHICK	1, ., 1, 1, ., 1, ., 1, 5	0.6183	0.4456	0.5491	yes	N/A
O77834	PRDX6_BOVIN	1, ., 1, 1, ., 1, ., 9	0.5937	0.4565	0.5625	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.11.1.15	LOW CONFIDENCE prediction!
3rd Layer	1.11.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	276
cd03016	203	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c	3e-53
COG0450	194	COG0450, AhpC, Peroxiredoxin [Posttranslational mo	4e-29
PRK13189	222	PRK13189, PRK13189, peroxiredoxin; Provisional	2e-28
cd03016	203	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c	4e-28
PTZ00327	460	PTZ00327, PTZ00327, eukaryotic translation initiat	4e-24
PRK13190	202	PRK13190, PRK13190, putative peroxiredoxin; Provis	1e-21
cd03688	113	cd03688, eIF2_gamma_II, eIF2_gamma_II: this subfam	2e-21
PRK13191	215	PRK13191, PRK13191, putative peroxiredoxin; Provis	3e-19
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	5e-19
COG0450	194	COG0450, AhpC, Peroxiredoxin [Posttranslational mo	4e-18
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	3e-16
PRK13189	222	PRK13189, PRK13189, peroxiredoxin; Provisional	5e-16
PRK13599	215	PRK13599, PRK13599, putative peroxiredoxin; Provis	1e-15
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	2e-15
cd03015	173	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family,	6e-15
cd03015	173	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family,	3e-14
COG5257	415	COG5257, GCD11, Translation initiation factor 2, g	1e-13
PRK13190	202	PRK13190, PRK13190, putative peroxiredoxin; Provis	2e-13
PRK13599	215	PRK13599, PRK13599, putative peroxiredoxin; Provis	6e-12
PRK13191	215	PRK13191, PRK13191, putative peroxiredoxin; Provis	2e-11
PTZ00253	199	PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi	1e-09
PTZ00137	261	PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision	2e-08
COG1225	157	COG1225, Bcp, Peroxiredoxin [Posttranslational mod	2e-08
cd03017	140	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact	3e-08
cd03018	149	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family	4e-08
PTZ00253	199	PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi	2e-07
PTZ00137	261	PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision	2e-07
PRK15000	200	PRK15000, PRK15000, peroxidase; Provisional	6e-07
PRK04000	411	PRK04000, PRK04000, translation initiation factor	7e-07
PRK10382	187	PRK10382, PRK10382, alkyl hydroperoxide reductase	3e-06
TIGR03680	406	TIGR03680, eif2g_arch, translation initiation fact	2e-05
TIGR03137	187	TIGR03137, AhpC, peroxiredoxin	3e-05
TIGR03137	187	TIGR03137, AhpC, peroxiredoxin	6e-05
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	1e-04
cd03017	140	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact	2e-04
PRK15000	200	PRK15000, PRK15000, peroxidase; Provisional	4e-04
COG1225	157	COG1225, Bcp, Peroxiredoxin [Posttranslational mod	8e-04
pfam10417	40	pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys	0.001

>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

 Score =  171 bits (436), Expect = 3e-53
 Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 9/121 (7%)

Query: 3   LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
           ++DI+ Y        ++P+PIIAD DR +A  LGM+DP      G  LT RAVFIIDP K
Sbjct: 77  IEDIEEY-----TGVEIPFPIIADPDREVAKLLGMIDP----DAGSTLTVRAVFIIDPDK 127

Query: 63  KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGK 122
           K+RL   YPATTGRNFDEILRV+D+LQLTD  KVATP +WK G ++ V P +  ++++ K
Sbjct: 128 KIRLILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWKPGDDVIVPPSVSDEEAKKK 187

Query: 123 L 123
            
Sbjct: 188 F 188

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203

>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  108 bits (273), Expect = 4e-29
 Identities = 38/92 (41%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
            G GK+ +P+IAD    +A   G+L P E       L  R  FIIDP   +R   + P T
Sbjct: 92  GGIGKIKFPMIADPKGEIARAYGVLHPEEG------LALRGTFIIDPDGVIRHILVNPLT 145

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
            GRN DEILRV+D+LQ         P +WK G
Sbjct: 146 IGRNVDEILRVIDALQFVAKHGEVCPANWKPG 177

Length = 194

>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional

 Score =  107 bits (270), Expect = 2e-28
 Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++ +PIIAD    +A +LGM+ P +  +     T RAVFIIDP   +R    YP   GRN
Sbjct: 97  EIEFPIIADDRGEIAKKLGMISPGKGTN-----TVRAVFIIDPKGIIRAILYYPQEVGRN 151

Query: 78  FDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVR 111
            DEILR++ +LQ +D K VATP +W     I+ +
Sbjct: 152 MDEILRLVKALQTSDEKGVATPANWPPNDLIKDK 185

Length = 222

>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

 Score =  106 bits (267), Expect = 4e-28
 Identities = 34/52 (65%), Positives = 40/52 (76%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           WGILFSHP+DFTPVCTTEL    +L  EF++R  K+I LS DSVESH  WI+
Sbjct: 27  WGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIE 78

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203

>gnl|CDD|240362 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2 gamma subunit; Provisional

 Score =  100 bits (251), Expect = 4e-24
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG++SKDS G+ TC+PI +RIVSLFAE NELQ+AVPGGLI
Sbjct: 278 KVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLI 326

Length = 460

>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional

 Score = 89.1 bits (221), Expect = 1e-21
 Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 6/103 (5%)

Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           K+P+P+IAD D+ LA +  ++D  E        T R VFIIDP + +R    YPA TGRN
Sbjct: 89  KIPFPVIADIDKELAREYNLID--ENSG----ATVRGVFIIDPNQIVRWMIYYPAETGRN 142

Query: 78  FDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
            DEI+R+  +LQ+   +KVATP +W+ G E  V       ++E
Sbjct: 143 IDEIIRITKALQVNWKRKVATPANWQPGQEGIVPAPSTLDEAE 185

Length = 202

>gnl|CDD|239659 cd03688, eIF2_gamma_II, eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea

 Score = 86.4 bits (215), Expect = 2e-21
 Identities = 35/49 (71%), Positives = 42/49 (85%), Gaps = 1/49 (2%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG+V KD EGK+ C+PIF++IVSL AE N+LQ AVPGGLI
Sbjct: 41  KVGDEIEIRPGIVVKD-EGKIKCRPIFTKIVSLKAENNDLQEAVPGGLI 88

eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding. Length = 113

>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional

 Score = 83.4 bits (206), Expect = 3e-19
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 9/110 (8%)

Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LGM+      +     T RAVFI+D    +RL   YP   GRN
Sbjct: 95  EVPFPIIADPMGNVAKRLGMIHAESSTA-----TVRAVFIVDDKGTVRLILYYPMEIGRN 149

Query: 78  FDEILRVLDSLQLTDTKKVATPVDWK----VGMEIEVRPGLVSKDSEGKL 123
            DEILR + +LQL D   V TP +W     +G ++        KD++ +L
Sbjct: 150 IDEILRAIRALQLVDKAGVVTPANWPNNELIGDKVINPAPRTIKDAKMRL 199

Length = 215

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score = 80.7 bits (200), Expect = 5e-19
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235
           W +LF +P DFTPVCTTEL     L +EF +   +V+ +S DS  SH  W +  
Sbjct: 24  WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 79.6 bits (197), Expect = 4e-18
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LF +P+DFT VC TE+    +  +EF++R  +VI +S DSV SH  W   +  
Sbjct: 35  WVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIRE 90

Length = 194

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score = 73.4 bits (181), Expect = 3e-16
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 17  GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR 76
           G L +P+++D D   A   G+L      S G  L  RA FIIDP  K+R   + P  TGR
Sbjct: 78  GGLNFPLLSDPDGEFAKAYGVLIE---KSAGGGLAARATFIIDPDGKIRYVEVEPLPTGR 134

Query: 77  NFDEIL 82
           N +E+L
Sbjct: 135 NAEELL 140

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           W +LFSHP+DFTPVCTTE     +   EF +   ++I LS D V SH  W++
Sbjct: 37  WFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVE 88

Length = 222

>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional

 Score = 73.6 bits (180), Expect = 1e-15
 Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
            +P+P+IAD    ++ QLGM+ P     KG   T RAVFI+D    +RL   YP   GRN
Sbjct: 90  AIPFPVIADDLGKVSNQLGMIHP----GKGTN-TVRAVFIVDDKGTIRLIMYYPQEVGRN 144

Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR L +LQ  D   VA P  W
Sbjct: 145 VDEILRALKALQTADQYGVALPEKW 169

Length = 215

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235
           W +LF +P DFTPVCTTEL  +  L +EF++   +V+ +S DS ESH  + + L
Sbjct: 27  WVVLFFYPKDFTPVCTTELPALADLYEEFKKLGVEVLGVSVDSPESHKKFAEKL 80

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

 Score = 70.6 bits (174), Expect = 6e-15
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G GK+ +P++AD  + ++   G+LD  E    G+ L  R  FIIDP   +R   +     
Sbjct: 89  GLGKINFPLLADPKKKISRDYGVLDEEE----GVAL--RGTFIIDPEGIIRHITVNDLPV 142

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
           GR+ DE LRVLD+LQ  +      P +WK G
Sbjct: 143 GRSVDETLRVLDALQFVEEHGEVCPANWKPG 173

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173

>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

 Score = 68.7 bits (169), Expect = 3e-14
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           W +LF +P DFT VC TE+       +EF++   +V+ +S DS  SH  W     ++  L
Sbjct: 31  WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGL 90

Query: 242 G 242
           G
Sbjct: 91  G 91

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173

>gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           +VG EIE+RPG+V +   GK   +PI + IVSL A   +++ A PGGL+
Sbjct: 247 RVGDEIEIRPGIVVEK-GGKTVWEPITTEIVSLQAGGEDVEEARPGGLV 294

Length = 415

>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 23/52 (44%), Positives = 36/52 (69%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           W +LFSHP+DFTPVCTTE     +  ++F++   +++ LS DS+ SH  W++
Sbjct: 29  WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLR 80

Length = 202

>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional

 Score = 63.2 bits (153), Expect = 6e-12
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           W +LFSHP+DFTPVCTTE     +   +F++   ++I LS D V SH  W++
Sbjct: 30  WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81

Length = 215

>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI 232
           W +LFSHP DFTPVCTTE     +  +EF++   ++I LS DS  SH +W+
Sbjct: 35  WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWV 85

Length = 215

>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P++AD+ +S+A   G+L    ++ +G+    R +FIIDP   LR   +     
Sbjct: 96  GLGTMAIPMLADKTKSIARSYGVL----EEEQGVAY--RGLFIIDPKGMLRQITVNDMPV 149

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
           GRN +E+LR+L++ Q  +      P +WK G
Sbjct: 150 GRNVEEVLRLLEAFQFVEKHGEVCPANWKKG 180

Length = 199

>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRD-CI 240
           +G+L  +P DFT VC +EL    + +KEFE+R  KV+ +S DS  SH  W +  VR   +
Sbjct: 100 YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGV 159

Query: 241 LGLLINLSVDDFKEVEGRSRRF 262
             L   L  D  +EV   S+ F
Sbjct: 160 SPLKFPLFSDISREV---SKSF 178

Length = 261

>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGL 243
           +L+ +P DFTP CTTE      L++EFE+    V+ +S DS +SH  + +        GL
Sbjct: 34  VLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEK------HGL 87

Query: 244 LINLSVDDFKEV 255
              L  D+  EV
Sbjct: 88  TFPLLSDEDGEV 99

Length = 157

>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
             +L+ +P D TP CT E      L +EF+     VI +S DSVESH  + +
Sbjct: 25  PVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAE 76

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140

>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 181 FWG----ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           F G    +L   P  FTPVCT EL  +   ++ FE    +V+ +S DS  S   W +
Sbjct: 25  FRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAE 81

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149

>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W +LF +P DFT VC TE+ +    +K F +  C+V+A S DS  +H  W
Sbjct: 38  WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQW 87

Length = 199

>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 19  LPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNF 78
           L +P+ +D  R ++   G+L       +G   + RA  ++D A  ++   +Y    GR+ 
Sbjct: 162 LKFPLFSDISREVSKSFGLLR-----DEG--FSHRASVLVDKAGVVKHVAVYDLGLGRSV 214

Query: 79  DEILRVLDSLQLTDTKKVATPVDWKVG 105
           DE LR+ D++Q  +      PV+WK G
Sbjct: 215 DETLRLFDAVQFAEKTGNVCPVNWKQG 241

Length = 261

>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional

 Score = 48.5 bits (115), Expect = 6e-07
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G + Y ++AD  R +    G    +E   +G+ L  R  F+ID    +R   +     
Sbjct: 94  GIGPVKYAMVADVKREIQKAYG----IEHPDEGVAL--RGSFLIDANGIVRHQVVNDLPL 147

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME-IEVRPGLVSK 117
           GRN DE+LR++D+LQ  +      P  W+ G E +   P  V+K
Sbjct: 148 GRNIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMNASPDGVAK 191

Length = 200

>gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG+  ++  GK   +PI ++IVSL A   +++ A PGGL+
Sbjct: 246 KVGDEIEIRPGIKVEE-GGKTKWEPITTKIVSLRAGGEKVEEARPGGLV 293

Length = 411

>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           + E      W + F +P+DFT VC TEL  V    +E ++    V ++S D+  +H  W
Sbjct: 24  VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 82

Length = 187

>gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG +  +  GK   +PI++ I SL A   +++ A PGGL+
Sbjct: 241 KVGDEIEIRPG-IKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLV 288

This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406

>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W + F +P+DFT VC TEL  +     E ++   +V ++S D+   H  W
Sbjct: 33  WSVFFFYPADFTFVCPTELEDLADNYAELKKLGVEVYSVSTDTHFVHKAW 82

This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187

>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 21/113 (18%)

Query: 17  GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR 76
           GK+ YP++ D    L    G+L        G+    R  F+IDP   ++   ++    GR
Sbjct: 90  GKITYPMLGDPTGVLTRNFGVLIEEA----GLAD--RGTFVIDPEGVIQAVEIHDNGIGR 143

Query: 77  NFDEILRVLDSLQLTDTKKVAT------PVDWKVGMEIEVRPGLVSKDSEGKL 123
           +  E+LR + + Q      VA       P  WK G E  ++P L   D  GK+
Sbjct: 144 DASELLRKIKAAQY-----VAAHPGEVCPAKWKEGAE-TLKPSL---DLVGKI 187

This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLR 65
            LP+P+++D D  +A   G+L+  E       L  R  F+IDP  K+R
Sbjct: 81  GLPFPLLSDPDGEVAKAYGVLNEEE------GLALRTTFVIDPDGKIR 122

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSF 68
            LP+P+++D D  LA   G+    EK  K M    R+ F+IDP  K+   +
Sbjct: 79  GLPFPLLSDPDGKLAKAYGV--WGEKKKKYM-GIERSTFLIDPDGKIVKVW 126

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140

>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           +LF  P DFT VC +EL    +  +EF++R  +V+ +S DS   H+ W
Sbjct: 38  VLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAW 85

Length = 200

>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 19  LPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNF 78
           L +P+++D+D  +A   G+    +   K      R+ F+IDP  K+R  +      G + 
Sbjct: 87  LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKG-HA 145

Query: 79  DEILRVLDSLQ 89
           DE+L  L  L 
Sbjct: 146 DEVLAALKKLA 156

Length = 157

>gnl|CDD|220741 pfam10417, 1-cysPrx_C, C-terminal domain of 1-Cys peroxiredoxin

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 87  SLQLTDTKKVATPVDWKVGMEIEVRP 112
           +LQ TD   V TP +WK G ++ V P
Sbjct: 1   ALQFTDKHGVVTPANWKPGDKVIVPP 26

This is the C-terminal domain of 1-Cys peroxiredoxin (1-cysPrx), a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine, upstream of this domain; and glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulfide to the sulfhydryl and consequent activation of the enzyme. The domain is associated with family AhpC-TSA, pfam00578, which carries the catalytic cysteine. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG0854|consensus	224		100.0
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	100.0
PRK13599	215	putative peroxiredoxin; Provisional	99.98
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.97
PRK13191	215	putative peroxiredoxin; Provisional	99.97
PRK13189	222	peroxiredoxin; Provisional	99.96
PRK13190	202	putative peroxiredoxin; Provisional	99.96
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.95
KOG0852|consensus	196		99.93
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.92
PRK15000	200	peroxidase; Provisional	99.92
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.9
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.9
PRK13191	215	putative peroxiredoxin; Provisional	99.9
PRK13190	202	putative peroxiredoxin; Provisional	99.89
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.89
PRK13599	215	putative peroxiredoxin; Provisional	99.89
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.89
PRK13189	222	peroxiredoxin; Provisional	99.89
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.89
PRK15000	200	peroxidase; Provisional	99.88
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.87
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.86
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.86
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.86
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.86
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.86
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.86
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.85
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.85
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.84
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.82
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.82
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.8
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.8
KOG0855|consensus	211		99.79
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.78
PTZ00056	199	glutathione peroxidase; Provisional	99.77
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.77
KOG0852|consensus	196		99.76
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.75
PLN02412	167	probable glutathione peroxidase	99.75
PTZ00256	183	glutathione peroxidase; Provisional	99.75
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.74
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.73
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.72
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.69
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.69
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.68
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.68
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.65
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.65
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.64
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.63
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.62
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.6
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.59
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.54
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.52
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.51
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.51
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.48
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.48
KOG0854|consensus	224		99.47
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.45
PF10417	40	1-cysPrx_C: C-terminal domain of 1-Cys peroxiredox	99.42
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	99.38
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.33
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.3
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.3
KOG0541|consensus	171		99.26
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.0
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.89
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.82
KOG2501|consensus	157		98.8
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.75
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.72
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	98.71
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	98.69
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.62
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	98.6
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.6
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.57
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.55
KOG2792|consensus	280		98.55
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.52
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.51
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.43
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.39
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	98.37
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.26
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.25
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.25
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.23
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.23
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.22
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.2
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.19
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.17
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.16
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.13
KOG0855|consensus	211		98.12
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.11
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.09
KOG0907|consensus	106		98.07
PRK09381	109	trxA thioredoxin; Provisional	98.06
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.03
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.03
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.02
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.02
PHA02278	103	thioredoxin-like protein	98.01
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.01
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	97.99
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	97.99
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	97.98
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	97.97
KOG0910|consensus	150		97.93
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.93
KOG1651|consensus	171		97.91
PLN02412	167	probable glutathione peroxidase	97.89
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.88
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	97.87
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.86
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.86
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	97.84
PTZ00051	98	thioredoxin; Provisional	97.83
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.81
PRK10996	139	thioredoxin 2; Provisional	97.8
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	97.79
PTZ00256	183	glutathione peroxidase; Provisional	97.78
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	97.77
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.76
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	97.73
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	97.69
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	97.68
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.67
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.63
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	97.61
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.59
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	97.59
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.59
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.58
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	97.55
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.54
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.53
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	97.5
PLN02309	457	5'-adenylylsulfate reductase	97.43
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.43
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.42
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.41
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.4
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.38
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.33
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.33
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.32
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.32
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	97.3
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.19
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.18
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.15
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	97.12
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.1
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.06
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.99
PTZ00102	477	disulphide isomerase; Provisional	96.95
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	96.94
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	96.93
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	96.91
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	96.87
PF13728	215	TraF: F plasmid transfer operon protein	96.82
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	96.8
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	96.78
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	96.75
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	96.72
KOG0908|consensus	288		96.64
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	96.61
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	96.58
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	96.54
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	96.53
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	96.51
PTZ00102	477	disulphide isomerase; Provisional	96.47
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	96.45
PTZ00056	199	glutathione peroxidase; Provisional	96.41
PTZ00062	204	glutaredoxin; Provisional	96.38
KOG4498|consensus	197		96.32
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.21
PRK13728	181	conjugal transfer protein TrbB; Provisional	96.19
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	96.15
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	95.88
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	95.63
PHA02125	75	thioredoxin-like protein	95.62
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	95.62
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	95.43
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	95.43
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	95.32
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	95.21
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	95.14
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	95.14
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	95.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.98
KOG0190|consensus	493		94.79
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	94.7
smart00594	122	UAS UAS domain.	94.51
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	94.11
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	94.11
KOG0190|consensus	493		94.09
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	93.84
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	93.81
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	93.48
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	93.16
KOG0191|consensus	383		92.5
KOG3425|consensus	128		92.44
KOG0191|consensus	383		92.19
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	91.89
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	91.84
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	90.95
PRK11200	85	grxA glutaredoxin 1; Provisional	90.92
KOG0466|consensus	466		90.91
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	90.68
KOG0912|consensus	375		90.46
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	89.74
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	89.11
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	88.21
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	87.46
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	85.69
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	85.69
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	84.66
COG3054	184	Predicted transcriptional regulator [General funct	84.62
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	83.69
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	83.43
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	82.71
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	82.31
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	81.22
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	80.7
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	80.63
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	80.48
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	80.36

>KOG0854|consensus

Probab=100.00  E-value=1e-36  Score=247.98  Aligned_cols=122  Identities=56%  Similarity=0.906  Sum_probs=114.3

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|++||++++..  +.+.++||||+|+++++|-.|||+++.+....|++.|+|++||||||.+||+++.||.++|||++|
T Consensus        82 ~Wi~DIks~~~~--~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dE  159 (224)
T KOG0854|consen   82 DWIKDIKSYAKV--KNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDE  159 (224)
T ss_pred             HHHHHHHHHHhc--cCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHH
Confidence            499999998752  234599999999999999999999998887778888999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCC
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLT  124 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~  124 (276)
                      |||+|++||++++++++||+||+||++|||+|++++|||++.|+
T Consensus       160 iLRvidsLqlt~~k~VaTP~nWkpg~~vmilPtV~~eeakklFp  203 (224)
T KOG0854|consen  160 ILRVIDSLQLTDKKGVATPVNWKPGDKVMILPTVSDEEAKKLFP  203 (224)
T ss_pred             HHHHHHHHhhhcccccccccccCCCCceEEcCcCChHHHHHhcc
Confidence            99999999999999999999999999999999999999999985

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-34  Score=239.83  Aligned_cols=111  Identities=34%  Similarity=0.566  Sum_probs=103.3

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      ||.++|++..|    +.+++||||+|++++||++|||++++.    |.  +.|++|||||+|+||++.+|+.++|||++|
T Consensus        83 aW~~~~~~~~g----i~~i~~PmiaD~~~~vs~~ygvl~~~~----g~--a~R~~FIIDp~g~ir~~~v~~~~iGRn~dE  152 (194)
T COG0450          83 AWKATIREAGG----IGKIKFPMIADPKGEIARAYGVLHPEE----GL--ALRGTFIIDPDGVIRHILVNPLTIGRNVDE  152 (194)
T ss_pred             HHHhcHHhcCC----ccceecceEEcCchhHHHHcCCcccCC----Cc--ceeEEEEECCCCeEEEEEEecCCCCcCHHH
Confidence            69999999988    367999999999999999999999875    55  689999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhc
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEG  121 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~  121 (276)
                      +||+|+|||++++|+++|||||++|+++|+||+.+.+.+++
T Consensus       153 ilR~idAlq~~~~hg~vcPanW~~G~~~i~p~~~~~~~~~~  193 (194)
T COG0450         153 ILRVIDALQFVAKHGEVCPANWKPGDKTIKPSPDLGEYLKE  193 (194)
T ss_pred             HHHHHHHHHHHHHhCCCccCCCCCCCccccCCccchhhhhc
Confidence            99999999999999999999999999999999988666654

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.98  E-value=4e-32  Score=235.51  Aligned_cols=124  Identities=33%  Similarity=0.508  Sum_probs=112.7

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|.++|++..+     .+++||||+|++++++++|||+++..    |. .+.|+||||||+|+||+++.||..+|||++|
T Consensus        78 ~w~~~i~~~~~-----~~i~fPil~D~~~~va~~yg~~~~~~----~~-~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~e  147 (215)
T PRK13599         78 KWVEWIKDNTN-----IAIPFPVIADDLGKVSNQLGMIHPGK----GT-NTVRAVFIVDDKGTIRLIMYYPQEVGRNVDE  147 (215)
T ss_pred             HHHHhHHHhcC-----CCCceeEEECCCchHHHHcCCCccCC----CC-ceeeEEEEECCCCEEEEEEEcCCCCCCCHHH
Confidence            48888988666     78999999999999999999987653    22 2689999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCC----CCceeeCCCCCchhhhccCC--------CCCceeeeee
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKV----GMEIEVRPGLVSKDSEGKLT--------CKPIFSRIVS  134 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~----g~~~~~~p~~~~~~~~~~~~--------~~~w~~~~~~  134 (276)
                      |||+|++||.+++++++|||||+|    ||+|||+|+++.+||+++|+        +..||+|.+.
T Consensus       148 ilr~l~~lq~~~~~~~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  213 (215)
T PRK13599        148 ILRALKALQTADQYGVALPEKWPNNYLIKDHVIVPPSTDEASANERKEKIKSKEIEAFDWWFVHKP  213 (215)
T ss_pred             HHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcEEEcCCCCHHHHHHhccccccCCcccccceEEeee
Confidence            999999999999999999999999    99999999999999998875        5789999765

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.97  E-value=2e-31  Score=229.49  Aligned_cols=124  Identities=52%  Similarity=0.895  Sum_probs=112.4

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|+++|++..+     .+++||+|+|++++++++|||+.+..    +.+.+.|++|||||+|+|++++.||++.|||++|
T Consensus        75 ~~~~~i~~~~~-----~~~~fpil~D~~~~ia~~yg~~~~~~----~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~e  145 (203)
T cd03016          75 KWIEDIEEYTG-----VEIPFPIIADPDREVAKLLGMIDPDA----GSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDE  145 (203)
T ss_pred             HHHhhHHHhcC-----CCCceeEEECchHHHHHHcCCccccC----CCCceeeEEEEECCCCeEEEEEecCCCCCCCHHH
Confidence            48888888766     67999999999999999999987542    3445789999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccC----CCCCceeeee
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL----TCKPIFSRIV  133 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~----~~~~w~~~~~  133 (276)
                      ++|+|++||.+++++++|||||++||+||++|+++.++|++++    .+..||+|.+
T Consensus       146 ll~~l~~lq~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (203)
T cd03016         146 ILRVVDALQLTDKHKVATPANWKPGDDVIVPPSVSDEEAKKKFPKGYETVDWYLRFT  202 (203)
T ss_pred             HHHHHHHHhhHhhcCcCcCCCCCCCCceecCCCCCHHHHHHhccCCCCcCcceEEeC
Confidence            9999999999999999999999999999999999999998775    4788999864

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.97  E-value=3e-30  Score=223.81  Aligned_cols=125  Identities=34%  Similarity=0.499  Sum_probs=112.6

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|.+++++..|     .+++||||+|++++++++|||+.+..   .+  .+.|++|||||+|+||+++.|++++|||++|
T Consensus        83 aw~~~~~~~~~-----~~i~fPllsD~~~~ia~~ygv~~~~~---~~--~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~e  152 (215)
T PRK13191         83 EWVMWIEKNLK-----VEVPFPIIADPMGNVAKRLGMIHAES---ST--ATVRAVFIVDDKGTVRLILYYPMEIGRNIDE  152 (215)
T ss_pred             HHHhhHHHhcC-----CCCceEEEECCchHHHHHcCCccccc---CC--ceeEEEEEECCCCEEEEEEecCCCCCCCHHH
Confidence            48888887666     68999999999999999999987542   12  2689999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCC----CCceeeCCCCCchhhhccCC-CCCceeeeeec
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKV----GMEIEVRPGLVSKDSEGKLT-CKPIFSRIVSL  135 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~----g~~~~~~p~~~~~~~~~~~~-~~~w~~~~~~~  135 (276)
                      +||+|++||.+++++++|||||+|    |+++|++|+.+.++|+++|+ +..||+|.+..
T Consensus       153 ilr~l~alq~~~~~~~~~P~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  212 (215)
T PRK13191        153 ILRAIRALQLVDKAGVVTPANWPNNELIGDKVINPAPRTIKDAKMRLGQPFDWWFTYKEV  212 (215)
T ss_pred             HHHHHHHhhhhhhcCCCcCCCCCCCCCCCCceecCCCCCHHHHHHhcccCCCCceEcccC
Confidence            999999999999999999999997    99999999999999999984 47899997654

>PRK13189 peroxiredoxin; Provisional

Probab=99.96  E-value=1.6e-29  Score=220.37  Aligned_cols=124  Identities=35%  Similarity=0.591  Sum_probs=111.6

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|++++++..|     .+++||||+|++++++++|||+.+...   +.  +.|++|||||+|+||+++.|++..|||++|
T Consensus        85 aw~~~~~~~~g-----~~i~fPllsD~~~~ia~~ygv~~~~~~---~~--~~r~tfIID~~G~Ir~~~~~~~~~gr~~~e  154 (222)
T PRK13189         85 KWVEWIKEKLG-----VEIEFPIIADDRGEIAKKLGMISPGKG---TN--TVRAVFIIDPKGIIRAILYYPQEVGRNMDE  154 (222)
T ss_pred             HHHHhHHHhcC-----cCcceeEEEcCccHHHHHhCCCccccC---CC--ceeEEEEECCCCeEEEEEecCCCCCCCHHH
Confidence            58888887666     679999999999999999999865421   12  689999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCC----ceeeCCCCCchhhhccCC--------CCCceeeeee
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGM----EIEVRPGLVSKDSEGKLT--------CKPIFSRIVS  134 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~----~~~~~p~~~~~~~~~~~~--------~~~w~~~~~~  134 (276)
                      +||+|++||.+++++++|||||+||+    ++|++|+.+.++|+++|+        +..||+|.+.
T Consensus       155 ilr~l~alq~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  220 (222)
T PRK13189        155 ILRLVKALQTSDEKGVATPANWPPNDLIKDKVIVPPASSVEEAKKRLEAKEKGEYECYDWWFCYKK  220 (222)
T ss_pred             HHHHHHHhhhHhhcCcCcCCCCCCCCCCCCceeeCCCCCHHHHHHhhcccccCCcccccceeEeee
Confidence            99999999999999999999999999    999999999999988863        6889998764

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.96  E-value=2.6e-29  Score=216.16  Aligned_cols=122  Identities=39%  Similarity=0.648  Sum_probs=110.2

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|++++.+..|     .+++||+|+|++++++++|||+.+..    |.  +.|++|||||+|+|+++..|+..+|||++|
T Consensus        77 ~w~~~~~~~~g-----~~~~fPll~D~~~~ia~~ygv~~~~~----g~--~~p~~fiId~~G~I~~~~~~~~~~gr~~~e  145 (202)
T PRK13190         77 AWLRDIEERFG-----IKIPFPVIADIDKELAREYNLIDENS----GA--TVRGVFIIDPNQIVRWMIYYPAETGRNIDE  145 (202)
T ss_pred             HHHHhHHHhcC-----CCceEEEEECCChHHHHHcCCccccC----Cc--EEeEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence            48888887766     56899999999999999999986543    43  579999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCC---CCCceeeee
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLT---CKPIFSRIV  133 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~---~~~w~~~~~  133 (276)
                      ++|+|++||.+++++++|||||+||+++|++|+.+.++|+++|+   +..||+|..
T Consensus       146 llr~l~~l~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (202)
T PRK13190        146 IIRITKALQVNWKRKVATPANWQPGQEGIVPAPSTLDEAEMRIKEPGAKTWYLKFK  201 (202)
T ss_pred             HHHHHHHhhhHHhcCCCcCCCCCcCCceecCCCCCHHHHHHHhcCCCCCCceeEec
Confidence            99999999999999999999999999999999999999988863   678888753

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.4e-27  Score=195.09  Aligned_cols=110  Identities=27%  Similarity=0.308  Sum_probs=103.3

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+.+|++||||+|++.+|+.++|+ +|+||+|||+|||.++||.|+.|++.|++.+++|++.|++|+|||+|++.+|++|
T Consensus         3 ~l~~G~~aPdF~Lp~~~g~~v~Ls-d~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F   81 (157)
T COG1225           3 MLKVGDKAPDFELPDQDGETVSLS-DLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF   81 (157)
T ss_pred             cCCCCCcCCCeEeecCCCCEEehH-HhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence            457999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY  271 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~  271 (276)
                      ++++      +++|++|||.++.   ++++||+..+...+
T Consensus        82 ~~k~------~L~f~LLSD~~~~---v~~~ygv~~~k~~~  112 (157)
T COG1225          82 AEKH------GLTFPLLSDEDGE---VAEAYGVWGEKKMY  112 (157)
T ss_pred             HHHh------CCCceeeECCcHH---HHHHhCcccccccC
Confidence            9999      9999999997765   78999998876543

>KOG0852|consensus

Probab=99.93  E-value=1.8e-26  Score=188.15  Aligned_cols=101  Identities=29%  Similarity=0.520  Sum_probs=95.2

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      ||++..++.+|    ...+++|||||.+++||+.|||++++.    |+  +.|.+||||++|++|.+..+.+.+||+++|
T Consensus        83 AW~ntprk~gG----lg~~~iPllsD~~~~IsrdyGvL~~~~----G~--~lRglfIId~~gi~R~it~NDlpvgRSVdE  152 (196)
T KOG0852|consen   83 AWINTPRKQGG----LGPLNIPLLSDLNHEISRDYGVLKEDE----GI--ALRGLFIIDPDGILRQITINDLPVGRSVDE  152 (196)
T ss_pred             hHhcCchhhCC----cCccccceeeccchhhHHhcCceecCC----Cc--ceeeeEEEccccceEEeeecccCCCccHHH
Confidence            79999999988    377999999999999999999999876    77  469999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeC
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVR  111 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~  111 (276)
                      +||.|+|.|.+++|+.+|||||+||.+.|.|
T Consensus       153 ~lRLvqAfQ~td~~geVcPagW~pgs~tikp  183 (196)
T KOG0852|consen  153 TLRLVQAFQFTDEHGEVCPAGWKPGSDTIKP  183 (196)
T ss_pred             HHHHHHHHhhhhccCccccCCCCCCCcccCC
Confidence            9999999999999999999999999999754

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.92  E-value=2e-25  Score=197.84  Aligned_cols=96  Identities=27%  Similarity=0.499  Sum_probs=89.6

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      .+++||||+|++++++++||++.+.     |.  +.|++|||||+|+|++++.|++.+|||++|+||+|++||.++++++
T Consensus       160 ~~l~fPlLsD~~~~iakayGv~~~~-----g~--a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~  232 (261)
T PTZ00137        160 SPLKFPLFSDISREVSKSFGLLRDE-----GF--SHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGN  232 (261)
T ss_pred             cCcceEEEEcCChHHHHHcCCCCcC-----Cc--eecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchhhhcCC
Confidence            6799999999999999999998642     44  6799999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCceeeCCCCCchhh
Q psy1172          97 ATPVDWKVGMEIEVRPGLVSKDS  119 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p~~~~~~~  119 (276)
                      +|||||+||+++|++++.+.++-
T Consensus       233 ~cPanW~~g~~~~~~~~~~~~~~  255 (261)
T PTZ00137        233 VCPVNWKQGDQAMKPDSQSVKQY  255 (261)
T ss_pred             CcCCCCCcCCceecCCcccHHHH
Confidence            99999999999999998887775

>PRK15000 peroxidase; Provisional

Probab=99.92  E-value=2.1e-25  Score=191.52  Aligned_cols=101  Identities=28%  Similarity=0.473  Sum_probs=90.8

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|.+++++..|    +.+++||+++|++++++++|||+.+..    |+  +.|++|||||+|+|++++.+++.+|||++|
T Consensus        84 ~w~~~~~~~~g----~~~i~fpllsD~~~~ia~~ygv~~~~~----g~--~~r~tfiID~~G~I~~~~~~~~~~gr~~~e  153 (200)
T PRK15000         84 AWRNTPVDKGG----IGPVKYAMVADVKREIQKAYGIEHPDE----GV--ALRGSFLIDANGIVRHQVVNDLPLGRNIDE  153 (200)
T ss_pred             HHHhhHHHhCC----ccccCceEEECCCcHHHHHcCCccCCC----Cc--EEeEEEEECCCCEEEEEEecCCCCCCCHHH
Confidence            47777777666    246899999999999999999987653    54  579999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeC
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVR  111 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~  111 (276)
                      +||+|++||++++++++|||||+||+++|.+
T Consensus       154 ilr~l~al~~~~~~~~~~p~~w~~g~~~~~~  184 (200)
T PRK15000        154 MLRMVDALQFHEEHGDVCPAQWEKGKEGMNA  184 (200)
T ss_pred             HHHHHHHhhhHHhcCCCcCCCCCCCCceecc
Confidence            9999999999999999999999999999855

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.90  E-value=6.3e-24  Score=180.40  Aligned_cols=90  Identities=23%  Similarity=0.432  Sum_probs=82.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccC-C
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTK-K   95 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~-~   95 (276)
                      .+++||||+|++++++++||++.+..    |+  +.|+||||||+|+|++++.++..++||++|+||.|++||+.++| +
T Consensus        90 ~~l~fpllsD~~~~ia~~ygv~~~~~----g~--~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g  163 (187)
T PRK10382         90 AKIKYAMIGDPTGALTRNFDNMREDE----GL--ADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPG  163 (187)
T ss_pred             cCCceeEEEcCchHHHHHcCCCcccC----Cc--eeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCC
Confidence            46999999999999999999986543    44  57999999999999999999999999999999999999999999 6


Q ss_pred             CCcCCCCCCCCceeeCC
Q psy1172          96 VATPVDWKVGMEIEVRP  112 (276)
Q Consensus        96 ~~~p~~w~~g~~~~~~p  112 (276)
                      ++||+||++|+++|.+-
T Consensus       164 ~~~p~~w~~~~~~~~~~  180 (187)
T PRK10382        164 EVCPAKWKEGEATLAPS  180 (187)
T ss_pred             eEeCCCCCcCCcceecC
Confidence            99999999999998553

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2e-23  Score=174.41  Aligned_cols=121  Identities=26%  Similarity=0.393  Sum_probs=108.6

Q ss_pred             cccccCCCCCcEEecC-CCC---eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172         152 DRFAAALLPGCSLLGC-QAS---LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES  227 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~-~G~---~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~  227 (276)
                      .+.+|+++|+|+++.. .|+   +++++ ++.|||+||+|||++++|.|..|+..|++.|++|+++|++||+||+|+.++
T Consensus         2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~-d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fs   80 (194)
T COG0450           2 MSLIGKKAPDFTANAVLGGEIFEEITLS-DYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFS   80 (194)
T ss_pred             ccccCCcCCCcEEEEEecCceeeEEech-hhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHH
Confidence            3568999999999998 775   89999 666799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCC-eeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172         228 HHDWIKALVRDCILG-LLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV  276 (276)
Q Consensus       228 ~~~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v  276 (276)
                      |.+|.+..+++.+++ ++||+++|.+++   ++++||+..+..|  ++|+||
T Consensus        81 H~aW~~~~~~~~gi~~i~~PmiaD~~~~---vs~~ygvl~~~~g~a~R~~FI  129 (194)
T COG0450          81 HKAWKATIREAGGIGKIKFPMIADPKGE---IARAYGVLHPEEGLALRGTFI  129 (194)
T ss_pred             HHHHHhcHHhcCCccceecceEEcCchh---HHHHcCCcccCCCcceeEEEE
Confidence            999999988887776 899999997664   7999999986655  568775

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.90  E-value=3.4e-23  Score=179.70  Aligned_cols=121  Identities=24%  Similarity=0.412  Sum_probs=102.7

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+.+|+++|+|++++.+|+ +++.++++||++||+|||++|||+|..|++.|++++++|+++|++|++||+|+..+|++|
T Consensus         6 ~~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw   84 (215)
T PRK13191          6 IPLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEW   84 (215)
T ss_pred             cccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence            4579999999999999986 566547899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC---CcccccC
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY---GYLGTYV  276 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~---~~lg~~v  276 (276)
                      .+..++..+++++||+++|.++   +++++||+..+..   ...++||
T Consensus        85 ~~~~~~~~~~~i~fPllsD~~~---~ia~~ygv~~~~~~~~~~r~tfI  129 (215)
T PRK13191         85 VMWIEKNLKVEVPFPIIADPMG---NVAKRLGMIHAESSTATVRAVFI  129 (215)
T ss_pred             HhhHHHhcCCCCceEEEECCch---HHHHHcCCcccccCCceeEEEEE
Confidence            9877654445788999999764   4789999976432   2345553

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.89  E-value=5.1e-23  Score=177.11  Aligned_cols=119  Identities=25%  Similarity=0.423  Sum_probs=102.0

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI  232 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~  232 (276)
                      +.+|+.+|+|++++..| .++|+ +++||++||+|||++|||+|+.|++.|++++++|+++|++|++||+|+.+++++|.
T Consensus         2 ~~vG~~aP~F~~~~~~g-~v~l~-d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~   79 (202)
T PRK13190          2 VKLGQKAPDFTVNTTKG-PIDLS-KYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL   79 (202)
T ss_pred             CCCCCCCCCcEEecCCC-cEeHH-HhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            46899999999999887 68998 78999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172         233 KALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV  276 (276)
Q Consensus       233 ~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v  276 (276)
                      +.+.++.++.++||+++|.++   +++++||+..+..+  +.++||
T Consensus        80 ~~~~~~~g~~~~fPll~D~~~---~ia~~ygv~~~~~g~~~p~~fi  122 (202)
T PRK13190         80 RDIEERFGIKIPFPVIADIDK---ELAREYNLIDENSGATVRGVFI  122 (202)
T ss_pred             HhHHHhcCCCceEEEEECCCh---HHHHHcCCccccCCcEEeEEEE
Confidence            887655444568999999765   47899999755443  345553

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.89  E-value=4.8e-23  Score=170.16  Aligned_cols=106  Identities=23%  Similarity=0.329  Sum_probs=96.1

Q ss_pred             ccCCCCCcEEecCC---CCeEEecccCCCCeEEEEEEcCCCCcccHHH-HHHHHHHHHHHHhCCc-EEEEEeCCChHHHH
Q psy1172         155 AAALLPGCSLLGCQ---ASLVILECSIPAFWGILFSHPSDFTPVCTTE-LARVLQLIKEFEQRTC-KVIALSCDSVESHH  229 (276)
Q Consensus       155 ~G~~aPdF~L~~~~---G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~e-l~~l~~~~~~~~~~gv-~Vv~VS~D~~~~~~  229 (276)
                      +|+++|+|+|++.+   |+.++|++.++||++||+|||++|||.|..| ++.|++.+++|+++|+ +|++||.|++++++
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~   80 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK   80 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence            58999999999985   8999999337999999999999999999999 9999999999999999 69999999999999


Q ss_pred             HHHHHHHhcccCCe--eEEEeeCCcchhhhhhhhcccccccC
Q psy1172         230 DWIKALVRDCILGL--LINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       230 ~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      +|++++      ++  +|++++|.++   +++++||+..+..
T Consensus        81 ~~~~~~------~~~~~f~lLsD~~~---~~~~~ygv~~~~~  113 (155)
T cd03013          81 AWGKAL------GAKDKIRFLADGNG---EFTKALGLTLDLS  113 (155)
T ss_pred             HHHHhh------CCCCcEEEEECCCH---HHHHHcCCCcccc
Confidence            999999      65  7999999764   4799999986643

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.89  E-value=8.5e-23  Score=177.16  Aligned_cols=111  Identities=27%  Similarity=0.482  Sum_probs=98.2

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI  232 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~  232 (276)
                      +.+|+++|+|++++++|+...++ +++||++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+.+++++|.
T Consensus         2 ~~~Gd~aPdF~l~t~~G~~~~~~-~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~   80 (215)
T PRK13599          2 KLLGEKFPSMEVVTTQGVKRLPE-DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWV   80 (215)
T ss_pred             CCCCCCCCCCEeECCCCcEecHH-HHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            36899999999999999877766 89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         233 KALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       233 ~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +..++..+.+++||+++|.++.   ++++||+..+
T Consensus        81 ~~i~~~~~~~i~fPil~D~~~~---va~~yg~~~~  112 (215)
T PRK13599         81 EWIKDNTNIAIPFPVIADDLGK---VSNQLGMIHP  112 (215)
T ss_pred             HhHHHhcCCCCceeEEECCCch---HHHHcCCCcc
Confidence            8776543447799999997654   6889998654

>TIGR03137 AhpC peroxiredoxin

Probab=99.89  E-value=7.3e-23  Score=174.07  Aligned_cols=116  Identities=22%  Similarity=0.295  Sum_probs=97.7

Q ss_pred             cccCCCCCcEEec-CCCC--eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         154 FAAALLPGCSLLG-CQAS--LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       154 ~~G~~aPdF~L~~-~~G~--~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      .+|+++|+|++++ .+|+  .++++ +|+||++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+++.+++
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~-d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~   81 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDE-DVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA   81 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHH-HHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence            4799999999998 5776  57777 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc--cccc
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTY  275 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~  275 (276)
                      |.+......  +++||+++|.++   +++++||+..+..++  ..+|
T Consensus        82 ~~~~~~~~~--~l~fpllsD~~~---~~a~~~gv~~~~~g~~~p~tf  123 (187)
T TIGR03137        82 WHDTSEAIG--KITYPMLGDPTG---VLTRNFGVLIEEAGLADRGTF  123 (187)
T ss_pred             HHhhhhhcc--CcceeEEECCcc---HHHHHhCCcccCCCceeeEEE
Confidence            987653222  568999999754   478999998654433  3444

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK13189 peroxiredoxin; Provisional

Probab=99.89  E-value=9.8e-23  Score=177.68  Aligned_cols=120  Identities=24%  Similarity=0.391  Sum_probs=102.7

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI  232 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~  232 (276)
                      +.+|+.+|+|++++++|+ +++++.++||++||+|||++|||+|..|++.|++++++|+++|++||+||+|+++++++|.
T Consensus         9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~   87 (222)
T PRK13189          9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV   87 (222)
T ss_pred             ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence            468999999999999985 6777467999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc---CCcccccC
Q psy1172         233 KALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT---YGYLGTYV  276 (276)
Q Consensus       233 ~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~---~~~lg~~v  276 (276)
                      +...+..+.+++||+++|.++   +++++||+....   ....++||
T Consensus        88 ~~~~~~~g~~i~fPllsD~~~---~ia~~ygv~~~~~~~~~~r~tfI  131 (222)
T PRK13189         88 EWIKEKLGVEIEFPIIADDRG---EIAKKLGMISPGKGTNTVRAVFI  131 (222)
T ss_pred             HhHHHhcCcCcceeEEEcCcc---HHHHHhCCCccccCCCceeEEEE
Confidence            987665555679999999765   478999987543   23456654

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.89  E-value=9.6e-23  Score=173.15  Aligned_cols=117  Identities=21%  Similarity=0.296  Sum_probs=99.6

Q ss_pred             cccCCCCCcEEecC-CC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         154 FAAALLPGCSLLGC-QA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       154 ~~G~~aPdF~L~~~-~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      .+|+++|+|+++.. +|  ..++|+ +|+||++||+|||++|||+|+.|++.|++++++|+++|++|++||+|+++.+++
T Consensus         3 ~~~~~~p~f~~~~~~~g~~~~v~L~-d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a   81 (187)
T PRK10382          3 LINTKIKPFKNQAFKNGEFIEVTEK-DTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA   81 (187)
T ss_pred             ccCCcCCCcEEEEEeCCcceEEEHH-HhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence            58999999999985 44  356777 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV  276 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v  276 (276)
                      |.+.....  .+++||+++|+++   +++++||++.+..++  ..+||
T Consensus        82 ~~~~~~~~--~~l~fpllsD~~~---~ia~~ygv~~~~~g~~~r~tfI  124 (187)
T PRK10382         82 WHSSSETI--AKIKYAMIGDPTG---ALTRNFDNMREDEGLADRATFV  124 (187)
T ss_pred             HHHhhccc--cCCceeEEEcCch---HHHHHcCCCcccCCceeeEEEE
Confidence            99875321  1678999999754   479999998665555  56554

>PRK15000 peroxidase; Provisional

Probab=99.88  E-value=1.7e-22  Score=173.49  Aligned_cols=120  Identities=20%  Similarity=0.290  Sum_probs=98.8

Q ss_pred             cccCCCCCcEEecCC--CCe---EEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         154 FAAALLPGCSLLGCQ--ASL---VILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~--G~~---v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      .+|+++|+|++++..  |+.   .+|++.++||++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+++.+
T Consensus         3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~   82 (200)
T PRK15000          3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH   82 (200)
T ss_pred             cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            489999999999874  443   355533389999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV  276 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v  276 (276)
                      ++|.+...++.++ +++||+++|.++   +++++||+..+..+  +.++||
T Consensus        83 ~~w~~~~~~~~g~~~i~fpllsD~~~---~ia~~ygv~~~~~g~~~r~tfi  130 (200)
T PRK15000         83 NAWRNTPVDKGGIGPVKYAMVADVKR---EIQKAYGIEHPDEGVALRGSFL  130 (200)
T ss_pred             HHHHhhHHHhCCccccCceEEECCCc---HHHHHcCCccCCCCcEEeEEEE
Confidence            9998876555443 468999999765   47899999865543  456654

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.87  E-value=3e-22  Score=171.86  Aligned_cols=92  Identities=32%  Similarity=0.590  Sum_probs=84.3

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      .+++||+|+|++++++++||++.+..    |+  +.|++|||||+|+||+++.++..+|||++|+||.|+++|..+++++
T Consensus        98 ~~~~fpll~D~~~~ia~~ygv~~~~~----g~--~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~~~~~~  171 (199)
T PTZ00253         98 GTMAIPMLADKTKSIARSYGVLEEEQ----GV--AYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGE  171 (199)
T ss_pred             cccccceEECcHhHHHHHcCCcccCC----Cc--eEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhHHhcCC
Confidence            36999999999999999999987643    44  5799999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCceeeCCCC
Q psy1172          97 ATPVDWKVGMEIEVRPGL  114 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p~~  114 (276)
                      .||+||+||+++|++++.
T Consensus       172 ~cp~~w~~g~~~~~~~~~  189 (199)
T PTZ00253        172 VCPANWKKGDPTMKPDPN  189 (199)
T ss_pred             EeCCCCCcCCccccCChH
Confidence            999999999999987653

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.86  E-value=1.4e-21  Score=173.36  Aligned_cols=113  Identities=28%  Similarity=0.348  Sum_probs=95.9

Q ss_pred             ccccccCCCCCcEEec-CCCC--eEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         151 IDRFAAALLPGCSLLG-CQAS--LVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       151 ~~~~~G~~aPdF~L~~-~~G~--~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      ..+.+|+++|+|++++ .+|+  .++|+ ++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||+|+++
T Consensus        66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLs-d~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~  144 (261)
T PTZ00137         66 TSSLVGKLMPSFKGTALLNDDLVQFNSS-DYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPF  144 (261)
T ss_pred             ccccCCCCCCCCEeecccCCCceEEeHH-HHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence            3457999999999988 4554  58998 55 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-cCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         227 SHHDWIKALVRDC-ILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       227 ~~~~~~~~~~~~~-~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ++++|.+...++. ..+++||+++|.++   +++++||+..+
T Consensus       145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~---~iakayGv~~~  183 (261)
T PTZ00137        145 SHKAWKELDVRQGGVSPLKFPLFSDISR---EVSKSFGLLRD  183 (261)
T ss_pred             HHHHHHhhhhhhccccCcceEEEEcCCh---HHHHHcCCCCc
Confidence            9999988643321 12678999999754   47999998753

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.86  E-value=1.4e-21  Score=168.24  Aligned_cols=108  Identities=33%  Similarity=0.505  Sum_probs=95.2

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCC-CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPA-FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK  233 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~g-k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~  233 (276)
                      +|+.+|+|++++++| .++|+ +++| |++||+|||++|||.|+.|++.|++++++|+++|++|++||+|+.+++++|.+
T Consensus         1 vG~~aP~F~~~~~~g-~~~l~-d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~   78 (203)
T cd03016           1 LGDTAPNFEADTTHG-PIKFH-DYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIE   78 (203)
T ss_pred             CcCCCCCeEEecCCC-cEeHH-HHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHh
Confidence            589999999999987 58998 7888 79999999999999999999999999999999999999999999999999998


Q ss_pred             HHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         234 ALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       234 ~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ...+..+.+++||+++|+++   +++++||+...
T Consensus        79 ~i~~~~~~~~~fpil~D~~~---~ia~~yg~~~~  109 (203)
T cd03016          79 DIEEYTGVEIPFPIIADPDR---EVAKLLGMIDP  109 (203)
T ss_pred             hHHHhcCCCCceeEEECchH---HHHHHcCCccc
Confidence            86554334789999999764   47899998743

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.86  E-value=1.3e-21  Score=154.08  Aligned_cols=103  Identities=22%  Similarity=0.363  Sum_probs=95.3

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA  234 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~  234 (276)
                      +|+++|+|++++.+|+.++|+ +++||++||+||+.+|||.|..+++.|++++++|+++|++|++||.|+++.+++|.+.
T Consensus         1 vG~~~P~f~l~~~~g~~~~l~-~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~   79 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGKTVSLS-DLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE   79 (124)
T ss_dssp             TTSBGGCEEEETTTSEEEEGG-GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred             CcCCCCCcEeECCCCCEEEHH-HHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence            699999999999999999999 8899999999998779999999999999999999999999999999999999999999


Q ss_pred             HHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         235 LVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       235 ~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +      +++|++++|.++.   .++.||+...
T Consensus        80 ~------~~~~~~~~D~~~~---~~~~~~~~~~  103 (124)
T PF00578_consen   80 Y------GLPFPVLSDPDGE---LAKAFGIEDE  103 (124)
T ss_dssp             H------TCSSEEEEETTSH---HHHHTTCEET
T ss_pred             h------ccccccccCcchH---HHHHcCCccc
Confidence            9      7899999996654   6888888743

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.86  E-value=1.7e-21  Score=158.00  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA  234 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~  234 (276)
                      +|+.+|+|++++.+|+.++|+ +++||++||+|||+.|||+|+.|++.|+++++++  +|+.||+||+|+++.+++|.++
T Consensus         2 ~G~~aP~f~l~~~~g~~~~l~-~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~~~   78 (143)
T cd03014           2 VGDKAPDFTLVTSDLSEVSLA-DFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWCGA   78 (143)
T ss_pred             CCCCCCCcEEECCCCcEEeHH-HhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHHHh
Confidence            699999999999999999999 7999999999998888999999999999999998  4899999999999999999998


Q ss_pred             HHhcccCCe-eEEEeeCCcchhhhhhhhcccccccCC
Q psy1172         235 LVRDCILGL-LINLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       235 ~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      +      +. .|++++|..  ..+++++||++.+..+
T Consensus        79 ~------~~~~~~~l~D~~--~~~~~~~~gv~~~~~~  107 (143)
T cd03014          79 E------GVDNVTTLSDFR--DHSFGKAYGVLIKDLG  107 (143)
T ss_pred             c------CCCCceEeecCc--ccHHHHHhCCeeccCC
Confidence            8      54 699999964  1356889999865444

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.86  E-value=1.7e-21  Score=167.22  Aligned_cols=120  Identities=27%  Similarity=0.390  Sum_probs=99.7

Q ss_pred             ccccCCCCCcEEec----CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         153 RFAAALLPGCSLLG----CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       153 ~~~G~~aPdF~L~~----~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      +.+|+++|+|++++    .+|+.++|+ +|+||++||+|||++||+.|..|+++|++++++|+++|++||+||+|+.+++
T Consensus         6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~-d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~   84 (199)
T PTZ00253          6 AKINHPAPSFEEVALMPNGSFKKISLS-SYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH   84 (199)
T ss_pred             cccCCcCCCCEeeccccCCCCcEEeHH-HHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence            56899999999765    456789999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV  276 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v  276 (276)
                      .+|.......++. +++||+++|.++   +++++||++....+  +.|+||
T Consensus        85 ~~~~~~~~~~~~~~~~~fpll~D~~~---~ia~~ygv~~~~~g~~~r~~fi  132 (199)
T PTZ00253         85 LQWTLQERKKGGLGTMAIPMLADKTK---SIARSYGVLEEEQGVAYRGLFI  132 (199)
T ss_pred             HHHHhChHhhCCccccccceEECcHh---HHHHHcCCcccCCCceEEEEEE
Confidence            9986544332222 368999999654   47899999765444  456664

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.86  E-value=3.1e-21  Score=161.88  Aligned_cols=110  Identities=25%  Similarity=0.287  Sum_probs=95.1

Q ss_pred             ccCCCCCcEEecCCC----CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         155 AAALLPGCSLLGCQA----SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G----~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      +|+++|+|++++.+|    +.++|+ +++||++||+|||++|||+|..+++.|++++++|+++|++|++||+|+.+.+++
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~-~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~   79 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLS-DYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA   79 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehH-HhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence            589999999999887    689998 899999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHhccc-CCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         231 WIKALVRDCI-LGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       231 ~~~~~~~~~~-~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |.+...+..+ .+++|++++|.++   +++++||+....
T Consensus        80 ~~~~~~~~~~~~~~~f~~l~D~~~---~~~~~~gv~~~~  115 (173)
T cd03015          80 WRNTPRKEGGLGKINFPLLADPKK---KISRDYGVLDEE  115 (173)
T ss_pred             HHHhhhhhCCccCcceeEEECCch---hHHHHhCCcccc
Confidence            8887643110 1578999999764   468889987554

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.85  E-value=3.7e-21  Score=156.72  Aligned_cols=108  Identities=24%  Similarity=0.270  Sum_probs=96.7

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCC-CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPA-FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~g-k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      +.+|+.+|+|++++.+|+.++++ +++| |++||+|||++|||.|..+++.|++++++|+++|++||+||.|+++.+++|
T Consensus         1 ~~~G~~~p~~~l~~~~g~~v~l~-~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~   79 (149)
T cd03018           1 LEVGDKAPDFELPDQNGQEVRLS-EFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAW   79 (149)
T ss_pred             CCCCCcCCCcEecCCCCCEEeHH-HHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHH
Confidence            35799999999999999999999 8999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ++++      +++|++++|.+.. .++++.||+....
T Consensus        80 ~~~~------~~~~~~~~D~~~~-~~~~~~~g~~~~~  109 (149)
T cd03018          80 AEEN------GLTFPLLSDFWPH-GEVAKAYGVFDED  109 (149)
T ss_pred             HHhc------CCCceEecCCCch-hHHHHHhCCcccc
Confidence            9888      7789999986511 3568889987554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.85  E-value=4.6e-21  Score=160.14  Aligned_cols=106  Identities=20%  Similarity=0.153  Sum_probs=93.2

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+.+|+.+|+|++++.+|+.++|+ +++||++||+|||+.|||+|+.|++.|++++++|  .|++|++||.|+++.+++|
T Consensus        17 ~~~~G~~~P~f~l~~~~g~~v~l~-~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~~f   93 (167)
T PRK00522         17 LPQVGDKAPDFTLVANDLSDVSLA-DFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQKRF   93 (167)
T ss_pred             CCCCCCCCCCeEEEcCCCcEEehH-HhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHHHH
Confidence            446899999999999999999999 8999999999997777999999999999999999  4899999999999999999


Q ss_pred             HHHHHhcccCCee-EEEeeCCcchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .+++      +++ +++++|..+  ..++++||+...+
T Consensus        94 ~~~~------~~~~~~~lsD~~~--~~~~~~~gv~~~~  123 (167)
T PRK00522         94 CGAE------GLENVITLSDFRD--HSFGKAYGVAIAE  123 (167)
T ss_pred             HHhC------CCCCceEeecCCc--cHHHHHhCCeecc
Confidence            9988      665 899998533  2468899997654

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.84  E-value=2.6e-20  Score=153.03  Aligned_cols=105  Identities=19%  Similarity=0.198  Sum_probs=95.9

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI  232 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~  232 (276)
                      +.+|+.+|+|++++.+|+.++|+ +++||++||+||++.|||.|+.+++.|++++++++++|++||+||.|+++.+++|.
T Consensus         4 ~~~g~~~p~f~l~~~~G~~~~l~-~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~   82 (154)
T PRK09437          4 LKAGDIAPKFSLPDQDGEQVSLT-DFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFA   82 (154)
T ss_pred             CCCCCcCCCcEeeCCCCCEEeHH-HhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            46799999999999999999999 79999999999988899999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         233 KALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       233 ~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +++      +++|++++|..+   .++++||+...
T Consensus        83 ~~~------~~~~~~l~D~~~---~~~~~~gv~~~  108 (154)
T PRK09437         83 EKE------LLNFTLLSDEDH---QVAEQFGVWGE  108 (154)
T ss_pred             HHh------CCCCeEEECCCc---hHHHHhCCCcc
Confidence            888      778999998654   46788998654

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.82  E-value=4.2e-20  Score=149.95  Aligned_cols=100  Identities=16%  Similarity=0.095  Sum_probs=88.4

Q ss_pred             CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHh
Q psy1172         158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR  237 (276)
Q Consensus       158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~  237 (276)
                      .+|+|++++.+|+.+++++..+++++||+||+++|||+|+.|++.|++++++|+++|++||+||.|+.+.+.+|.+..  
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~--   78 (149)
T cd02970           1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGK--   78 (149)
T ss_pred             CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhc--
Confidence            489999999999999998334568999999999999999999999999999999999999999999988887788777  


Q ss_pred             cccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172         238 DCILGLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       238 ~~~~~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                          +++||+++|++..   ++++||+..
T Consensus        79 ----~~~~p~~~D~~~~---~~~~~g~~~  100 (149)
T cd02970          79 ----FLPFPVYADPDRK---LYRALGLVR  100 (149)
T ss_pred             ----CCCCeEEECCchh---HHHHcCcee
Confidence                7899999997654   688899863

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.82  E-value=6.5e-20  Score=147.68  Aligned_cols=101  Identities=28%  Similarity=0.291  Sum_probs=93.1

Q ss_pred             CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHH
Q psy1172         157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALV  236 (276)
Q Consensus       157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~  236 (276)
                      +++|+|++++.+|+.++++ +++||++||+||+++|||.|..+++.|++++++|+++|++||+||+|+++.+++|.+++ 
T Consensus         1 ~~~p~f~l~~~~g~~~~l~-~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~-   78 (140)
T cd03017           1 DKAPDFTLPDQDGETVSLS-DLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY-   78 (140)
T ss_pred             CCCCCccccCCCCCEEeHH-HhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-
Confidence            4689999999999999999 89999999999999999999999999999999999999999999999999999999988 


Q ss_pred             hcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         237 RDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       237 ~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                           +++|++++|.+.   +++++||+...
T Consensus        79 -----~~~~~~l~D~~~---~~~~~~gv~~~  101 (140)
T cd03017          79 -----GLPFPLLSDPDG---KLAKAYGVWGE  101 (140)
T ss_pred             -----CCCceEEECCcc---HHHHHhCCccc
Confidence                 778999999765   46888998765

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.80  E-value=1.4e-19  Score=147.18  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=88.1

Q ss_pred             cccCCCCCcEEec--CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         154 FAAALLPGCSLLG--CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       154 ~~G~~aPdF~L~~--~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      ++|+++|+|++++  .+|+.++|+ +++||++||+||++.|||+|+.|+|.|++++++++++|+.+++|+.++.....+|
T Consensus         1 k~G~~~P~~~~~~~~~~g~~~~l~-~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   79 (146)
T PF08534_consen    1 KVGDKAPDFSLKDLDLDGKPVSLS-DFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF   79 (146)
T ss_dssp             STTSB--CCEEEEEETTSEEEEGG-GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred             CCCCCCCCeEEEeecCCCCEecHH-HhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence            4799999999966  999999999 6999999999995549999999999999999999999999999999876668888


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                      .+++      +.+|+++.|.++.   ++++||+.
T Consensus        80 ~~~~------~~~~~~~~D~~~~---~~~~~~~~  104 (146)
T PF08534_consen   80 LKKY------GINFPVLSDPDGA---LAKALGVT  104 (146)
T ss_dssp             HHHT------TTTSEEEEETTSH---HHHHTTCE
T ss_pred             HHhh------CCCceEEechHHH---HHHHhCCc
Confidence            8886      7789999996554   68888876

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.80  E-value=1.4e-19  Score=148.80  Aligned_cols=97  Identities=12%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             CCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------ChHHHHH
Q psy1172         159 LPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SVESHHD  230 (276)
Q Consensus       159 aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~~~~~~  230 (276)
                      +|+|+|++.+|+.++|+ +++||++||+|| ++||| |+.|+|.|++++++|+++|++||+||.|        +++.+++
T Consensus         2 ~~~f~l~d~~G~~v~l~-~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~   78 (152)
T cd00340           2 IYDFSVKDIDGEPVSLS-KYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE   78 (152)
T ss_pred             cceeEEECCCCCEEeHH-HhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence            79999999999999999 899999999999 99999 9999999999999999999999999974        3577888


Q ss_pred             HHHH-HHhcccCCeeEEEeeCCcchhhhhhhhccc
Q psy1172         231 WIKA-LVRDCILGLLINLSVDDFKEVEGRSRRFQE  264 (276)
Q Consensus       231 ~~~~-~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv  264 (276)
                      |+++ +      +++||+++|.+......++.|++
T Consensus        79 f~~~~~------~~~fp~~~d~d~~~~~~~~~~~~  107 (152)
T cd00340          79 FCETNY------GVTFPMFAKIDVNGENAHPLYKY  107 (152)
T ss_pred             HHHHhc------CCCceeeeeEeccCCCCChHHHH
Confidence            8876 6      67899997743222123455664

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>KOG0855|consensus

Probab=99.79  E-value=3.4e-19  Score=144.50  Aligned_cols=108  Identities=20%  Similarity=0.252  Sum_probs=98.0

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      -+.+|+.+|||+|+|.||..++|. .+.|+ +|||+|||++-+|.|++|.+.|++.|++|+..+.+|+|+|.|+..++++
T Consensus        62 ~v~~Gd~iPD~tL~dedg~sisLk-kit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKa  140 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLKDEDGKSISLK-KITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKA  140 (211)
T ss_pred             eeecCCcCCCcccccCCCCeeeee-eecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHH
Confidence            457999999999999999999999 66664 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      |+.++      +++|.+|+|+.++   +-+.+|+..++.
T Consensus       141 F~sKq------nlPYhLLSDpk~e---~ik~lGa~k~p~  170 (211)
T KOG0855|consen  141 FASKQ------NLPYHLLSDPKNE---VIKDLGAPKDPF  170 (211)
T ss_pred             hhhhc------cCCeeeecCcchh---HHHHhCCCCCCC
Confidence            99999      8999999997665   566788876544

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.78  E-value=1.5e-18  Score=139.55  Aligned_cols=102  Identities=31%  Similarity=0.459  Sum_probs=91.0

Q ss_pred             CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHh
Q psy1172         158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR  237 (276)
Q Consensus       158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~  237 (276)
                      .+|+|++++.+|+.++++ +++||++||+||+++|||+|..+++.|++++++|++.++++|+||.|+++.+++|++++. 
T Consensus         1 ~~p~f~l~~~~g~~~~l~-~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~-   78 (140)
T cd02971           1 KAPDFTLPATDGGEVSLS-DFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEG-   78 (140)
T ss_pred             CCCCceeccCCCcEEehH-HhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhccc-
Confidence            479999999999999999 889999999999999999999999999999999998999999999999998888887762 


Q ss_pred             cccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         238 DCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       238 ~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                          +.+|++++|.++   .++++||+....
T Consensus        79 ----~~~~~~l~D~~~---~~~~~~g~~~~~  102 (140)
T cd02971          79 ----GLNFPLLSDPDG---EFAKAYGVLIEK  102 (140)
T ss_pred             ----CCCceEEECCCh---HHHHHcCCcccc
Confidence                447999998765   468889887554

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.77  E-value=1.2e-18  Score=149.66  Aligned_cols=88  Identities=7%  Similarity=0.044  Sum_probs=81.3

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------CChH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------DSVE  226 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D~~~  226 (276)
                      .|..+|+|++++.+|+.++|+ +++||++||+|| ++|||+|+.|+|.|++++++|+++|++||+||.        |+++
T Consensus        15 ~~~~~pdf~l~d~~G~~vsL~-~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e   92 (199)
T PTZ00056         15 LRKSIYDYTVKTLEGTTVPMS-SLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK   92 (199)
T ss_pred             cCCCCCceEEECCCCCEEeHH-HhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH
Confidence            568899999999999999999 899999999999 999999999999999999999999999999996        5677


Q ss_pred             HHHHHHHHHHhcccCCeeEEEeeC
Q psy1172         227 SHHDWIKALVRDCILGLLINLSVD  250 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~l~D  250 (276)
                      .+++|++++      +++||+++|
T Consensus        93 ~~~~f~~~~------~~~fpvl~d  110 (199)
T PTZ00056         93 DIRKFNDKN------KIKYNFFEP  110 (199)
T ss_pred             HHHHHHHHc------CCCceeeee
Confidence            888898887      788999875

>TIGR03137 AhpC peroxiredoxin

Probab=99.77  E-value=9.1e-19  Score=148.89  Aligned_cols=90  Identities=29%  Similarity=0.551  Sum_probs=80.7

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccC-C
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTK-K   95 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~-~   95 (276)
                      .+++||+++|++++++++||+..+..    |+  +.|+|||||++|+|++++.++...+|+++++|+.|+++|..+++ +
T Consensus        90 ~~l~fpllsD~~~~~a~~~gv~~~~~----g~--~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~  163 (187)
T TIGR03137        90 GKITYPMLGDPTGVLTRNFGVLIEEA----GL--ADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVAAHPG  163 (187)
T ss_pred             cCcceeEEECCccHHHHHhCCcccCC----Cc--eeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCC
Confidence            35999999999999999999976532    43  56999999999999999998889999999999999999999999 7


Q ss_pred             CCcCCCCCCCCceeeCCC
Q psy1172          96 VATPVDWKVGMEIEVRPG  113 (276)
Q Consensus        96 ~~~p~~w~~g~~~~~~p~  113 (276)
                      +.|||||++|++++ .|.
T Consensus       164 ~~~~~~~~~~~~~~-~~~  180 (187)
T TIGR03137       164 EVCPAKWKEGAETL-KPS  180 (187)
T ss_pred             eeeCCCCCcCCccc-cCC
Confidence            99999999999997 443

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>KOG0852|consensus

Probab=99.76  E-value=1.6e-18  Score=141.65  Aligned_cols=119  Identities=28%  Similarity=0.331  Sum_probs=106.0

Q ss_pred             cccCCCCCcEEecC-CC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         154 FAAALLPGCSLLGC-QA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       154 ~~G~~aPdF~L~~~-~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      .+..++|+|+-+.+ +|  +.++|+ +|+||+|+++|||.+++..|..|+..|.+.+++|++.|++|+++|+|+.++|.+
T Consensus         5 ~~~~p~p~fk~~aVVdG~f~e~~L~-dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlA   83 (196)
T KOG0852|consen    5 VVFKPAPDFKGTAVVDGEFKEIKLS-DYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLA   83 (196)
T ss_pred             ccCCCCCCcceeEEEcCcceEEeeh-hhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhh
Confidence            45677899998875 66  478898 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCC-eeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172         231 WIKALVRDCILG-LLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV  276 (276)
Q Consensus       231 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v  276 (276)
                      |+..-++++|++ +++|+++|...   +++|.||++.+..|.  +|.||
T Consensus        84 W~ntprk~gGlg~~~iPllsD~~~---~IsrdyGvL~~~~G~~lRglfI  129 (196)
T KOG0852|consen   84 WINTPRKQGGLGPLNIPLLSDLNH---EISRDYGVLKEDEGIALRGLFI  129 (196)
T ss_pred             HhcCchhhCCcCccccceeeccch---hhHHhcCceecCCCcceeeeEE
Confidence            999999998876 57999999765   479999999887764  57774

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.75  E-value=3.5e-18  Score=149.74  Aligned_cols=91  Identities=7%  Similarity=0.094  Sum_probs=80.4

Q ss_pred             cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------Ch
Q psy1172         154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SV  225 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~  225 (276)
                      ..|+.+|+|+++|.+|+.++|+ +++||++||+|| ++|||+|..|+|+|++++++|+++|++||+|+.|        +.
T Consensus        74 ~~g~~aPdF~l~d~~G~~vsLs-d~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~  151 (236)
T PLN02399         74 ATEKSVHDFTVKDIDGKDVALS-KFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN  151 (236)
T ss_pred             hcCCCCCceEEECCCCCEEeHH-HhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence            4789999999999999999999 899999999999 9999999999999999999999999999999963        45


Q ss_pred             HHHHHHH-HHHHhcccCCeeEEEeeCCc
Q psy1172         226 ESHHDWI-KALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       226 ~~~~~~~-~~~~~~~~~~~~~~~l~D~~  252 (276)
                      +.+++|+ +++      +++||++.|.+
T Consensus       152 ~ei~~f~~~~~------g~~fPvl~~~D  173 (236)
T PLN02399        152 PEIKQFACTRF------KAEFPIFDKVD  173 (236)
T ss_pred             HHHHHHHHHhc------CCCCccccccC
Confidence            6677776 455      77899886543

>PLN02412 probable glutathione peroxidase

Probab=99.75  E-value=3.1e-18  Score=143.12  Aligned_cols=98  Identities=7%  Similarity=0.078  Sum_probs=80.1

Q ss_pred             CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------ChHH-
Q psy1172         157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SVES-  227 (276)
Q Consensus       157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~~~-  227 (276)
                      +.+|+|+|++.+|+.++|+ +++||++||+|| ++|||+|+.|+|.|++++++|+++|++|++||.|        +.+. 
T Consensus         7 ~~~pdf~l~d~~G~~v~l~-~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~   84 (167)
T PLN02412          7 KSIYDFTVKDIGGNDVSLN-QYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI   84 (167)
T ss_pred             CCCCceEEECCCCCEEeHH-HhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence            6799999999999999999 899999999999 9999999999999999999999999999999975        3333 


Q ss_pred             HHHHHHHHHhcccCCeeEEEeeC--Ccchhhhhhhhccc
Q psy1172         228 HHDWIKALVRDCILGLLINLSVD--DFKEVEGRSRRFQE  264 (276)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~l~D--~~~~~~~~a~~ygv  264 (276)
                      ++.|.+++      +++||+++|  .++  ...++.|++
T Consensus        85 ~~~~~~~~------~~~fpvl~~~d~~g--~~~~~~~~~  115 (167)
T PLN02412         85 QQTVCTRF------KAEFPIFDKVDVNG--KNTAPLYKY  115 (167)
T ss_pred             HHHHHHcc------CCCCceEeEEeeCC--CCCCHHHHH
Confidence            33445655      778999874  332  134555654

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.75  E-value=3.3e-18  Score=144.96  Aligned_cols=88  Identities=10%  Similarity=0.221  Sum_probs=73.6

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEE-EEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--------h
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGIL-FSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--------V  225 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL-~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--------~  225 (276)
                      .++.+|+|++++.+|+.++|+ +|+||++|| ++| ++|||+|+.|||.|++++++|+++|+.||+||.|+        .
T Consensus        16 ~~~~~p~f~l~d~~G~~vsLs-~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~   93 (183)
T PTZ00256         16 PTKSFFEFEAIDIDGQLVQLS-KFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDE   93 (183)
T ss_pred             CCCcccceEeEcCCCCEEeHH-HhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCH
Confidence            357799999999999999999 899997654 456 99999999999999999999999999999999752        3


Q ss_pred             HHHHHHHH-HHHhcccCCeeEEEeeC
Q psy1172         226 ESHHDWIK-ALVRDCILGLLINLSVD  250 (276)
Q Consensus       226 ~~~~~~~~-~~~~~~~~~~~~~~l~D  250 (276)
                      +..++|.. ++      +++||+++|
T Consensus        94 ~~~~~f~~~~~------~~~fpv~~d  113 (183)
T PTZ00256         94 PEIKEYVQKKF------NVDFPLFQK  113 (183)
T ss_pred             HHHHHHHHHhc------CCCCCCceE
Confidence            45555543 44      778999865

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.74  E-value=4.5e-18  Score=139.86  Aligned_cols=83  Identities=13%  Similarity=0.200  Sum_probs=76.1

Q ss_pred             CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------CChHHHHHH
Q psy1172         160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------DSVESHHDW  231 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D~~~~~~~~  231 (276)
                      =+|++++.+|++++|+ +++||++||+|| ++|||+|..++|.|++++++|+++|+.|++||.        |+++.+++|
T Consensus         3 ~~f~l~~~~G~~~~l~-~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f   80 (153)
T TIGR02540         3 YSFEVKDARGRTVSLE-KYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESF   80 (153)
T ss_pred             ccceeECCCCCEecHH-HhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHH
Confidence            4799999999999999 899999999999 999999999999999999999999999999994        667888889


Q ss_pred             HHH-HHhcccCCeeEEEeeC
Q psy1172         232 IKA-LVRDCILGLLINLSVD  250 (276)
Q Consensus       232 ~~~-~~~~~~~~~~~~~l~D  250 (276)
                      +++ +      +++||+++|
T Consensus        81 ~~~~~------~~~fp~~~d   94 (153)
T TIGR02540        81 ARRNY------GVTFPMFSK   94 (153)
T ss_pred             HHHhc------CCCCCccce
Confidence            875 6      778999876

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.73  E-value=2.1e-17  Score=133.36  Aligned_cols=103  Identities=20%  Similarity=0.227  Sum_probs=89.7

Q ss_pred             CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcc-cHHHHHHHHHHHHHHHhCC---cEEEEEeCCC----hHHHH
Q psy1172         158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPV-CTTELARVLQLIKEFEQRT---CKVIALSCDS----VESHH  229 (276)
Q Consensus       158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~-C~~el~~l~~~~~~~~~~g---v~Vv~VS~D~----~~~~~  229 (276)
                      .+|+|++++.+|+.++++ +++||++||+|| ++||++ |..+++.|++++++|++++   +++++||.|+    ++.++
T Consensus         1 ~~p~f~l~~~~g~~~~l~-~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~   78 (142)
T cd02968           1 IGPDFTLTDQDGRPVTLS-DLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK   78 (142)
T ss_pred             CCCceEEEcCCCCEEchH-HhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence            479999999999999999 789999999999 899997 9999999999999998875   9999999864    56777


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      +|.+++      +.+|++++|.......+++.||+....
T Consensus        79 ~~~~~~------~~~~~~l~~~~~~~~~~~~~~g~~~~~  111 (142)
T cd02968          79 AYAKAF------GPGWIGLTGTPEEIEALAKAFGVYYEK  111 (142)
T ss_pred             HHHHHh------CCCcEEEECCHHHHHHHHHHhcEEEEe
Confidence            888777      678999998765556779999987654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.72  E-value=3.6e-17  Score=136.79  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=88.7

Q ss_pred             cCCCCCcEEecCCCCeEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--------hH
Q psy1172         156 AALLPGCSLLGCQASLVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--------VE  226 (276)
Q Consensus       156 G~~aPdF~L~~~~G~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--------~~  226 (276)
                      |+.+|+|++++.+|+.++|+ ++ +|+++||+|| ++|||.|..+++.|++++++|+++++++|+||.|+        ++
T Consensus         1 g~~~p~f~l~~~~g~~v~l~-~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~   78 (171)
T cd02969           1 GSPAPDFSLPDTDGKTYSLA-DFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPE   78 (171)
T ss_pred             CCcCCCccccCCCCCEEeHH-HHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHH
Confidence            68899999999999999999 77 8999999999 99999999999999999999998999999999975        45


Q ss_pred             HHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         227 SHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      ..++|.+++      +++|++++|.++   .+++.||+...++
T Consensus        79 ~~~~~~~~~------~~~~~~l~D~~~---~~~~~~~v~~~P~  112 (171)
T cd02969          79 NMKAKAKEH------GYPFPYLLDETQ---EVAKAYGAACTPD  112 (171)
T ss_pred             HHHHHHHHC------CCCceEEECCch---HHHHHcCCCcCCc
Confidence            566666665      778999999765   4678888865444

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.69  E-value=2.3e-16  Score=131.45  Aligned_cols=107  Identities=12%  Similarity=0.180  Sum_probs=93.0

Q ss_pred             ccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHH
Q psy1172         151 IDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHH  229 (276)
Q Consensus       151 ~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~  229 (276)
                      ..+.+|+.+|+|++++.+|+.++++ +++||+++|+|| ++|||.|+.+++.|++++++|.+.+++|++|+.|+ .+.++
T Consensus        33 ~~~~~g~~~p~~~~~~~~g~~~~l~-~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~  110 (173)
T PRK03147         33 EKVQVGKEAPNFVLTDLEGKKIELK-DLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVK  110 (173)
T ss_pred             cccCCCCCCCCcEeecCCCCEEeHH-HcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHH
Confidence            4567899999999999999999999 789999999999 99999999999999999999999899999999974 46778


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .|.+++      +++|+++.|...   .+.+.||+..-+
T Consensus       111 ~~~~~~------~~~~~~~~d~~~---~~~~~~~v~~~P  140 (173)
T PRK03147        111 NFVNRY------GLTFPVAIDKGR---QVIDAYGVGPLP  140 (173)
T ss_pred             HHHHHh------CCCceEEECCcc---hHHHHcCCCCcC
Confidence            888777      778999988654   457788875443

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.69  E-value=1.3e-16  Score=133.83  Aligned_cols=83  Identities=39%  Similarity=0.725  Sum_probs=75.3

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      .+++||+++|++++++++||+.....    |.  +.|++||||++|+|++.+..+...+++.++|++.|+.++...+|++
T Consensus        91 ~~~~f~~l~D~~~~~~~~~gv~~~~~----~~--~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~  164 (173)
T cd03015          91 GKINFPLLADPKKKISRDYGVLDEEE----GV--ALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHGE  164 (173)
T ss_pred             cCcceeEEECCchhHHHHhCCccccC----Cc--eeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcCC
Confidence            46899999999999999999875532    33  5689999999999999999888889999999999999999999999


Q ss_pred             CcCCCCCCC
Q psy1172          97 ATPVDWKVG  105 (276)
Q Consensus        97 ~~p~~w~~g  105 (276)
                      +||+||++|
T Consensus       165 ~~~~~~~~~  173 (173)
T cd03015         165 VCPANWKPG  173 (173)
T ss_pred             CcCCCCCCC
Confidence            999999998

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.68  E-value=1.6e-16  Score=135.37  Aligned_cols=104  Identities=16%  Similarity=0.123  Sum_probs=84.5

Q ss_pred             cccccCCCCCcEEecCCCCeEEecc-cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILEC-SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~-~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      ++.+|+++|+|+++|.+|+.+++++ .++||++||+|| ++|||+|++++|.+++++++   .++.|++||.|+++.+++
T Consensus        45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~~~  120 (189)
T TIGR02661        45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEHRR  120 (189)
T ss_pred             CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHHHH
Confidence            4579999999999999999999952 579999999999 99999999999999998754   478899999999999999


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      |.+++      +++++.+. .+   .+.++.||+..-++
T Consensus       121 ~~~~~------~~~~~~~~-~~---~~i~~~y~v~~~P~  149 (189)
T TIGR02661       121 FLKDH------ELGGERYV-VS---AEIGMAFQVGKIPY  149 (189)
T ss_pred             HHHhc------CCCcceee-ch---hHHHHhccCCccce
Confidence            99888      55554332 22   24577888754443

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.68  E-value=9.7e-17  Score=136.17  Aligned_cols=103  Identities=15%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             ccccCCCCCcEEecCCC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHH
Q psy1172         153 RFAAALLPGCSLLGCQA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHH  229 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~  229 (276)
                      ..+|+.+|+|++++.+|  +.++++...+||++||+|| ++|||+|++|+|.|++++    ++|++|++||.| +++.++
T Consensus        39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~~  113 (185)
T PRK15412         39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAI  113 (185)
T ss_pred             hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHHH
Confidence            46899999999999984  6666662348999999999 999999999999998764    468999999985 567788


Q ss_pred             HHHHHHHhcccCCeeEEE-eeCCcchhhhhhhhcccccccC
Q psy1172         230 DWIKALVRDCILGLLINL-SVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~-l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      +|.+++      +++|++ +.|..+.   .++.||+...++
T Consensus       114 ~~~~~~------~~~~~~~~~D~~~~---~~~~~gv~~~P~  145 (185)
T PRK15412        114 SWLKEL------GNPYALSLFDGDGM---LGLDLGVYGAPE  145 (185)
T ss_pred             HHHHHc------CCCCceEEEcCCcc---HHHhcCCCcCCe
Confidence            898888      677874 6675543   567888865543

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.65  E-value=8.7e-16  Score=119.33  Aligned_cols=96  Identities=21%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             CCcEEecCCCCeEEecccCC-CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhc
Q psy1172         160 PGCSLLGCQASLVILECSIP-AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRD  238 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~~-gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~  238 (276)
                      |+|++++.+|+.++|+ +++ ||++||+|| ++|||+|+.++|.|++++++++ .++.|++|+.++.+..++|++++   
T Consensus         1 p~f~l~~~~G~~~~l~-~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~---   74 (114)
T cd02967           1 PTFDLTTIDGAPVRIG-GISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKH---   74 (114)
T ss_pred             CCceeecCCCCEEEcc-cccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHh---
Confidence            8999999999999999 776 999999999 9999999999999999988874 46888999877888888999988   


Q ss_pred             ccCCee-EEEeeCCcchhhhhhhhcccccccC
Q psy1172         239 CILGLL-INLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       239 ~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                         ++. +|++.+  .   .++++||+..-++
T Consensus        75 ---~~~~~p~~~~--~---~~~~~~~~~~~P~   98 (114)
T cd02967          75 ---GLEAFPYVLS--A---ELGMAYQVSKLPY   98 (114)
T ss_pred             ---CCCCCcEEec--H---HHHhhcCCCCcCe
Confidence               663 777753  2   3577888864444

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.65  E-value=2.8e-16  Score=124.90  Aligned_cols=87  Identities=11%  Similarity=0.110  Sum_probs=75.2

Q ss_pred             CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC------CChHHHHHHHHHHHhcccCC
Q psy1172         169 ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC------DSVESHHDWIKALVRDCILG  242 (276)
Q Consensus       169 G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~------D~~~~~~~~~~~~~~~~~~~  242 (276)
                      |+.++|+ +++||++||+|| ++|||+|..++|.|++++++|+++|+.||+|+.      ++++.+++|++++      +
T Consensus        13 ~~~v~l~-~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~------~   84 (126)
T cd03012          13 DKPLSLA-QLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY------G   84 (126)
T ss_pred             CCccCHH-HhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc------C
Confidence            4678998 789999999999 999999999999999999999999999999986      3567778888877      8


Q ss_pred             eeEEEeeCCcchhhhhhhhccccc
Q psy1172         243 LLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       243 ~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      ++||+++|.+..   .++.||+..
T Consensus        85 ~~~p~~~D~~~~---~~~~~~v~~  105 (126)
T cd03012          85 ITYPVANDNDYA---TWRAYGNQY  105 (126)
T ss_pred             CCCCEEECCchH---HHHHhCCCc
Confidence            899999986543   577788753

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.64  E-value=5e-16  Score=123.27  Aligned_cols=98  Identities=12%  Similarity=0.103  Sum_probs=80.3

Q ss_pred             CCCCCcEEecCCC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC-CChHHHHHHHH
Q psy1172         157 ALLPGCSLLGCQA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC-DSVESHHDWIK  233 (276)
Q Consensus       157 ~~aPdF~L~~~~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~-D~~~~~~~~~~  233 (276)
                      +.+|+|++++.+|  +.++++ +++||++||+|| ++|||+|..++|.|+++.+++   +++||+|+. ++.+.+++|.+
T Consensus         1 ~~~p~f~~~~~~g~~~~~~~~-~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~   75 (127)
T cd03010           1 KPAPAFSLPALPGPDKTLTSA-DLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA   75 (127)
T ss_pred             CCCCCcccccccCCCccccHH-HcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence            3689999999988  788888 889999999999 999999999999999987764   599999997 46778888887


Q ss_pred             HHHhcccCCeeEE-EeeCCcchhhhhhhhccccccc
Q psy1172         234 ALVRDCILGLLIN-LSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       234 ~~~~~~~~~~~~~-~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ++      +++|+ ++.|..+   .+++.||+..-+
T Consensus        76 ~~------~~~~~~~~~D~~~---~~~~~~~v~~~P  102 (127)
T cd03010          76 RH------GNPYAAVGFDPDG---RVGIDLGVYGVP  102 (127)
T ss_pred             hc------CCCCceEEECCcc---hHHHhcCCCCCC
Confidence            77      66664 5567543   467788886543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.63  E-value=1.2e-15  Score=124.52  Aligned_cols=93  Identities=10%  Similarity=0.052  Sum_probs=69.6

Q ss_pred             eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-------CcEEEEEeCCC-hHHHHHHHHHHHhcccCC
Q psy1172         171 LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-------TCKVIALSCDS-VESHHDWIKALVRDCILG  242 (276)
Q Consensus       171 ~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-------gv~Vv~VS~D~-~~~~~~~~~~~~~~~~~~  242 (276)
                      .++|+ +|+||+++|+|| |+|||+|++++|.|+++|++++++       +++||+||.|. .+..++|.+++      +
T Consensus        17 ~~~ls-~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------~   88 (146)
T cd03008          17 REIVA-RLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------P   88 (146)
T ss_pred             cccHH-HhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC------C
Confidence            56777 899999999999 999999999999999999988764       69999999985 44566777776      5


Q ss_pred             eeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172         243 LLINLSVDDFKEVEGRSRRFQESLNTYGY  271 (276)
Q Consensus       243 ~~~~~l~D~~~~~~~~a~~ygv~~~~~~~  271 (276)
                      +.++++...+.....+++.||+..-++-+
T Consensus        89 ~~~~~~p~~~~~~~~l~~~y~v~~iPt~v  117 (146)
T cd03008          89 KKWLFLPFEDEFRRELEAQFSVEELPTVV  117 (146)
T ss_pred             CCceeecccchHHHHHHHHcCCCCCCEEE
Confidence            45543322222233568889986544433

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.62  E-value=1.5e-15  Score=127.52  Aligned_cols=102  Identities=13%  Similarity=0.143  Sum_probs=79.3

Q ss_pred             ccccCCCCCcEEecCCCC--eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHH
Q psy1172         153 RFAAALLPGCSLLGCQAS--LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHH  229 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~--~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~  229 (276)
                      ..+|+++|+|++++.+|+  .+++++..+||+++|+|| ++|||+|+.++|.+++++    ++|++|++||.+ +.+.++
T Consensus        34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~~~~~  108 (173)
T TIGR00385        34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQSQNAL  108 (173)
T ss_pred             hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCChHHHH
Confidence            468999999999999987  455552247999999999 999999999999987764    458999999986 456667


Q ss_pred             HHHHHHHhcccCCeeEE-EeeCCcchhhhhhhhccccccc
Q psy1172         230 DWIKALVRDCILGLLIN-LSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      +|.+++      +++|+ ++.|..+.   +++.|++..-+
T Consensus       109 ~~~~~~------~~~f~~v~~D~~~~---~~~~~~v~~~P  139 (173)
T TIGR00385       109 KFLKEL------GNPYQAILIDPNGK---LGLDLGVYGAP  139 (173)
T ss_pred             HHHHHc------CCCCceEEECCCCc---hHHhcCCeeCC
Confidence            788777      67776 55676543   57778875433

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.60  E-value=4e-15  Score=125.95  Aligned_cols=86  Identities=9%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------CChHHH
Q psy1172         157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------DSVESH  228 (276)
Q Consensus       157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D~~~~~  228 (276)
                      +.+++|++++.+|+.++|+ +|+||++||+|| |+||+.|. +++.|++++++|+++|++|+||+.        ++.+.+
T Consensus         3 ~~~~~f~~~~~~G~~v~Ls-~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei   79 (183)
T PRK10606          3 DSILTTVVTTIDGEVTTLE-KYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI   79 (183)
T ss_pred             CCccCcEeECCCCCEEeHH-HhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence            3589999999999999999 899999999999 99999885 899999999999999999999987        456778


Q ss_pred             HHHHH-HHHhcccCCeeEEEeeCC
Q psy1172         229 HDWIK-ALVRDCILGLLINLSVDD  251 (276)
Q Consensus       229 ~~~~~-~~~~~~~~~~~~~~l~D~  251 (276)
                      ++|++ .+      +++||++++.
T Consensus        80 ~~f~~~~~------g~~Fpv~~k~   97 (183)
T PRK10606         80 KTYCRTTW------GVTFPMFSKI   97 (183)
T ss_pred             HHHHHHcc------CCCceeEEEE
Confidence            88876 45      7789999443

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=5.8e-15  Score=118.36  Aligned_cols=112  Identities=19%  Similarity=0.191  Sum_probs=97.6

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+++|++||+|+|.+.+.+.++|+ +++||..+|+.||+-.+|.|..|...|++...++  .+..|+.||+|.|+.+++|
T Consensus        17 ~~~vGd~ap~ftl~~~dL~~v~l~-~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--~~~~Vl~IS~DLPFAq~Rf   93 (158)
T COG2077          17 EPQVGDKAPDFTLVGKDLNDVSLA-DFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL--GNTVVLCISMDLPFAQKRF   93 (158)
T ss_pred             CCccCCcCCceEEEcCcccceecc-ccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc--CCcEEEEEeCCChhHHhhh
Confidence            368999999999999999999999 9999999999999999999999999999988877  4589999999999999999


Q ss_pred             HHHHHhcccCCee-EEEeeCCcchhhhhhhhcccccccC---Ccccc
Q psy1172         232 IKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLNTY---GYLGT  274 (276)
Q Consensus       232 ~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~~---~~lg~  274 (276)
                      +...      ++. ...+||.-  ...+.+.||+.+..-   |++.|
T Consensus        94 C~ae------Gi~nv~~lSd~r--~~~Fge~yGv~I~egpL~gLlAR  132 (158)
T COG2077          94 CGAE------GIENVITLSDFR--DRAFGENYGVLINEGPLAGLLAR  132 (158)
T ss_pred             hhhc------CcccceEhhhhh--hhhhhHhhCEEeccccccCeeee
Confidence            9999      554 77777753  335688999998877   55544

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=2.4e-14  Score=117.37  Aligned_cols=73  Identities=26%  Similarity=0.414  Sum_probs=62.5

Q ss_pred             CCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        16 ~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      +++|+||||||++++|+++||++.+..........+.|+|||||++|+|+++| +..++..|.+|+++.|++++
T Consensus        84 k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~~l~  156 (157)
T COG1225          84 KHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALKKLA  156 (157)
T ss_pred             HhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHHHhc
Confidence            36799999999999999999999876532222234789999999999999999 58999999999999999875

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.52  E-value=3.9e-14  Score=111.45  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=78.4

Q ss_pred             CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--hHHHHHHHHHHHh
Q psy1172         160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--VESHHDWIKALVR  237 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--~~~~~~~~~~~~~  237 (276)
                      |+|++++.+|+.++++ .++||+++|+|| ++|||+|+.+++.|++++++     +.+++|+.|+  ++.+++|.+++  
T Consensus         1 p~f~l~~~~g~~~~~~-~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~--   71 (123)
T cd03011           1 PLFTATTLDGEQFDLE-SLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK--   71 (123)
T ss_pred             CCceeecCCCCEeeHH-HhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc--
Confidence            8999999999999999 789999999999 99999999999999998876     6788888864  67788888887  


Q ss_pred             cccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         238 DCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       238 ~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                          +++|+++.|.+.   ++++.|++..-
T Consensus        72 ----~~~~~~~~d~~~---~~~~~~~i~~~   94 (123)
T cd03011          72 ----GYGFPVINDPDG---VISARWGVSVT   94 (123)
T ss_pred             ----CCCccEEECCCc---HHHHhCCCCcc
Confidence                778999988654   46777887543

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.51  E-value=6.9e-14  Score=106.79  Aligned_cols=94  Identities=16%  Similarity=0.271  Sum_probs=83.2

Q ss_pred             CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--hHHHHHHHHHHHhc
Q psy1172         161 GCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--VESHHDWIKALVRD  238 (276)
Q Consensus       161 dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--~~~~~~~~~~~~~~  238 (276)
                      +|++.+.+|+.++++ +++||+++|+|| ++||++|...++.|.++.+++.+.++.+++|+.|+  ++..+++.+.+   
T Consensus         1 ~~~~~~~~g~~~~~~-~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~---   75 (116)
T cd02966           1 DFSLPDLDGKPVSLS-DLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY---   75 (116)
T ss_pred             CccccCCCCCEeehH-HcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc---
Confidence            588999999999998 788999999999 99999999999999999999988889999999997  78888888887   


Q ss_pred             ccCCeeEEEeeCCcchhhhhhhhcccc
Q psy1172         239 CILGLLINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       239 ~~~~~~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                         +.+++++.|...   .+++.||+.
T Consensus        76 ---~~~~~~~~~~~~---~~~~~~~~~   96 (116)
T cd02966          76 ---GITFPVLLDPDG---ELAKAYGVR   96 (116)
T ss_pred             ---CCCcceEEcCcc---hHHHhcCcC
Confidence               678999988643   468888885

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.51  E-value=5.9e-14  Score=135.31  Aligned_cols=105  Identities=11%  Similarity=0.148  Sum_probs=82.9

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC------hH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS------VE  226 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~------~~  226 (276)
                      +..++.+|+|++.|.+|+.++++   +||+|||+|| ++|||+|+.++|.|++++++++..+++||+|+.+.      .+
T Consensus        32 ~~~~~~lP~f~l~D~dG~~v~ls---kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~  107 (521)
T PRK14018         32 ATVPHTLSTLKTADNRPASVYLK---KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG  107 (521)
T ss_pred             ccccCCCCCeEeecCCCceeecc---CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence            45678999999999999998887   8999999999 99999999999999999999988899999998731      23


Q ss_pred             HHHHHHHHHHhcccCCe-eEEEeeCCcchhhhhhhhcccccccCC
Q psy1172         227 SHHDWIKALVRDCILGL-LINLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      ..++|.+.+      ++ .++++.|.+.   .+++.|++..-++-
T Consensus       108 ~~~~~~~~~------~y~~~pV~~D~~~---~lak~fgV~giPTt  143 (521)
T PRK14018        108 DFQKWYAGL------DYPKLPVLTDNGG---TLAQSLNISVYPSW  143 (521)
T ss_pred             HHHHHHHhC------CCcccceeccccH---HHHHHcCCCCcCeE
Confidence            334444433      43 4678877544   46788888654443

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.48  E-value=1.2e-13  Score=110.26  Aligned_cols=96  Identities=15%  Similarity=0.204  Sum_probs=70.9

Q ss_pred             EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCChHHHHHHHHHHHhcccC
Q psy1172         164 LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDSVESHHDWIKALVRDCIL  241 (276)
Q Consensus       164 L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~~~~~~~~~~~~~~~~~~  241 (276)
                      |.+.+|+.++++ +++||++||+|| ++||++|+.++|.|++++++++++  +++|++||.|...  +.|.+.+.+.   
T Consensus         3 l~~~~G~~v~l~-~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~---   75 (131)
T cd03009           3 LLRNDGGKVPVS-SLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSKM---   75 (131)
T ss_pred             ccccCCCCccHH-HhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHcC---
Confidence            567899999999 899999999999 999999999999999999999875  7999999998643  3454444322   


Q ss_pred             Ce-eEEEeeCCcchhhhhhhhccccccc
Q psy1172         242 GL-LINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       242 ~~-~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      +. .+++. + ......+++.||+..-+
T Consensus        76 ~~~~~~~~-~-~~~~~~~~~~~~v~~~P  101 (131)
T cd03009          76 PWLAVPFS-D-RERRSRLNRTFKIEGIP  101 (131)
T ss_pred             CeeEcccC-C-HHHHHHHHHHcCCCCCC
Confidence            21 23322 1 11223457788886433

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.48  E-value=1.4e-13  Score=110.22  Aligned_cols=93  Identities=11%  Similarity=0.144  Sum_probs=68.8

Q ss_pred             CC-CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCC-hHHHHHHHHHHHhcccCCe
Q psy1172         168 QA-SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDS-VESHHDWIKALVRDCILGL  243 (276)
Q Consensus       168 ~G-~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~-~~~~~~~~~~~~~~~~~~~  243 (276)
                      || ++++++ +++||++||+|| ++||++|+.++|.|+++++++++.  +++|++||.|. ....++|.+++      + 
T Consensus         5 ~~~~~v~l~-~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~------~-   75 (132)
T cd02964           5 DGEGVVPVS-ALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM------P-   75 (132)
T ss_pred             cCCccccHH-HhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC------C-
Confidence            44 489998 899999999999 999999999999999999999875  79999999984 45666666665      3 


Q ss_pred             eEEEeeCCc-chhhhhhhhcccccccC
Q psy1172         244 LINLSVDDF-KEVEGRSRRFQESLNTY  269 (276)
Q Consensus       244 ~~~~l~D~~-~~~~~~a~~ygv~~~~~  269 (276)
                      .+..+...+ ......++.||+..-++
T Consensus        76 ~~~~~~~~d~~~~~~~~~~~~v~~iPt  102 (132)
T cd02964          76 PWLAVPFEDEELRELLEKQFKVEGIPT  102 (132)
T ss_pred             CeEeeccCcHHHHHHHHHHcCCCCCCE
Confidence            222221112 22234577788765443

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>KOG0854|consensus

Probab=99.47  E-value=1.3e-13  Score=113.14  Aligned_cols=111  Identities=35%  Similarity=0.529  Sum_probs=93.5

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI  232 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~  232 (276)
                      +.+|+.+|+|+..++.|+ +.+.+.+.+.|.||+..|++++|.|+.|+.++.++..+|..+|+..|++|+|+.++|+.|.
T Consensus         6 l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~Wi   84 (224)
T KOG0854|consen    6 LRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDWI   84 (224)
T ss_pred             ccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHHH
Confidence            358999999999888885 6788667778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccC---CeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         233 KALVRDCIL---GLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       233 ~~~~~~~~~---~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +..+..+..   .++||++.|+..+   ++-.||....
T Consensus        85 ~DIks~~~~~~~~~~yPIIaD~~re---la~~l~MlD~  119 (224)
T KOG0854|consen   85 KDIKSYAKVKNHSVPYPIIADPNRE---LAFLLNMLDP  119 (224)
T ss_pred             HHHHHHHhccCCCCCCCeecCCchh---hhhhhcccCH
Confidence            888543221   3679999886544   5667776543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.45  E-value=1.4e-13  Score=143.54  Aligned_cols=105  Identities=13%  Similarity=0.025  Sum_probs=85.0

Q ss_pred             cccCCCCCcEEec--CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC---CCh---
Q psy1172         154 FAAALLPGCSLLG--CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC---DSV---  225 (276)
Q Consensus       154 ~~G~~aPdF~L~~--~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~---D~~---  225 (276)
                      ..|+++|+|+.++  .+|+.+++..+++||++||+|| ++||++|+.++|.|++++++|+++++.||+|+.   |..   
T Consensus       392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~  470 (1057)
T PLN02919        392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDL  470 (1057)
T ss_pred             ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccH
Confidence            4799999999886  6888888855899999999999 999999999999999999999999999999984   332   


Q ss_pred             HHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         226 ESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      +..+++.+++      ++.||+..|.+.   ++.+.|++..-+
T Consensus       471 ~~~~~~~~~~------~i~~pvv~D~~~---~~~~~~~V~~iP  504 (1057)
T PLN02919        471 EAIRNAVLRY------NISHPVVNDGDM---YLWRELGVSSWP  504 (1057)
T ss_pred             HHHHHHHHHh------CCCccEEECCch---HHHHhcCCCccc
Confidence            3344445444      778998888654   457778876443

>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []

Probab=99.42  E-value=3.6e-14  Score=90.00  Aligned_cols=37  Identities=35%  Similarity=0.689  Sum_probs=34.3

Q ss_pred             hhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccC
Q psy1172          87 SLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL  123 (276)
Q Consensus        87 ~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~  123 (276)
                      |||++++++++|||||+|||++||+|+.|.++|.++|
T Consensus         1 ALQ~~d~~~v~tPanW~pGd~~ivpp~~s~~~a~k~~   37 (40)
T PF10417_consen    1 ALQFTDKHGVATPANWKPGDDVIVPPPVSQEEAKKRF   37 (40)
T ss_dssp             HHHHHHHHSSBBCTTTCTTSGEBE-TTSSTTHHHHHH
T ss_pred             CceehhhhCcccCcCCCCCCCeEcCCCCCHHHHHHHc
Confidence            6899999999999999999999999999999998876

The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=1.7e-12  Score=104.07  Aligned_cols=112  Identities=19%  Similarity=0.251  Sum_probs=94.1

Q ss_pred             ccccCCCCCcEEecC------CC-CeEEecccCCCCeEEEEEEcCCCCcccHH-HHHHHHHHHHHHHhCCc-EEEEEeCC
Q psy1172         153 RFAAALLPGCSLLGC------QA-SLVILECSIPAFWGILFSHPSDFTPVCTT-ELARVLQLIKEFEQRTC-KVIALSCD  223 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~------~G-~~v~l~~~~~gk~vvL~f~pa~~cp~C~~-el~~l~~~~~~~~~~gv-~Vv~VS~D  223 (276)
                      .++|+++|..+++..      +| ..++..+.|+||.|||+--|++++|+|.. ++|.+.+++++|+++|+ +|++||++
T Consensus         3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN   82 (165)
T COG0678           3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN   82 (165)
T ss_pred             cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence            468999999999765      22 34666667899999999999999999997 89999999999999999 79999999


Q ss_pred             ChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172         224 SVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY  271 (276)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~  271 (276)
                      +++...+|.+....    +-++.++.|..+   ++.++.|...+..+.
T Consensus        83 D~FVm~AWak~~g~----~~~I~fi~Dg~g---eFTk~~Gm~~d~~~~  123 (165)
T COG0678          83 DAFVMNAWAKSQGG----EGNIKFIPDGNG---EFTKAMGMLVDKSDL  123 (165)
T ss_pred             cHHHHHHHHHhcCC----CccEEEecCCCc---hhhhhcCceeecccC
Confidence            99999999999832    226889988655   478889988776644

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.33  E-value=3.7e-12  Score=107.62  Aligned_cols=107  Identities=7%  Similarity=-0.012  Sum_probs=81.0

Q ss_pred             ccccCCCCCcEEecC-----CCC-----eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEE-----
Q psy1172         153 RFAAALLPGCSLLGC-----QAS-----LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKV-----  217 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~-----~G~-----~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~V-----  217 (276)
                      +.+|+++|..++.+-     +|.     .++++ +++||+.||+|| |+||++|+.|+|.|.++    +++|+.+     
T Consensus        23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~-~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~   96 (184)
T TIGR01626        23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSA-ELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT   96 (184)
T ss_pred             hhcCCcCCceEecCCceEEEcCCcccceeccHH-HcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence            568999999988754     333     55666 899999999999 99999999999999987    6788999     


Q ss_pred             -EEEeCCC-hHHHHHHHHHHHhcccCCeeEE---EeeCCcchhhhhhhhcccccccCC
Q psy1172         218 -IALSCDS-VESHHDWIKALVRDCILGLLIN---LSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       218 -v~VS~D~-~~~~~~~~~~~~~~~~~~~~~~---~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                       ++||.|+ ......|.+.+.++.  +..||   ++.|.++   ..+.+||+...++.
T Consensus        97 t~~IN~dd~~~~~~~fVk~fie~~--~~~~P~~~vllD~~g---~v~~~~gv~~~P~T  149 (184)
T TIGR01626        97 TTIINADDAIVGTGMFVKSSAKKG--KKENPWSQVVLDDKG---AVKNAWQLNSEDSA  149 (184)
T ss_pred             eEEEECccchhhHHHHHHHHHHHh--cccCCcceEEECCcc---hHHHhcCCCCCCce
Confidence             9999985 345556666554443  44555   8888654   35778998766544

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.30  E-value=9e-12  Score=93.62  Aligned_cols=84  Identities=15%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHH-hCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhh
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFE-QRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGR  258 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~-~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  258 (276)
                      ||+++|+|| ++||++|.+++|.|.+++++++ +.++++|+||.|..  ..+|.+...+.   +.++..+...+......
T Consensus         1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l   74 (95)
T PF13905_consen    1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKKN---NFPWYNVPFDDDNNSEL   74 (95)
T ss_dssp             TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHTC---TTSSEEEETTTHHHHHH
T ss_pred             CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHhc---CCCceEEeeCcchHHHH
Confidence            799999999 9999999999999999999998 67899999999843  34555555443   33444433333445566


Q ss_pred             hhhcccccccC
Q psy1172         259 SRRFQESLNTY  269 (276)
Q Consensus       259 a~~ygv~~~~~  269 (276)
                      .+.|++..-++
T Consensus        75 ~~~~~i~~iP~   85 (95)
T PF13905_consen   75 LKKYGINGIPT   85 (95)
T ss_dssp             HHHTT-TSSSE
T ss_pred             HHHCCCCcCCE
Confidence            88898865433

...

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.30  E-value=4.8e-12  Score=106.41  Aligned_cols=61  Identities=15%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .++...|+|+|.  +|+.++++ +|+    ||+|| ++|||+|++|+|.|+++++++   |+.|++||+|..
T Consensus        50 ~~~~~~~~f~l~--dG~~v~ls-d~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~  110 (181)
T PRK13728         50 TEKPAPRWFRLS--NGRQVNLA-DWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQ  110 (181)
T ss_pred             cCCCCCCccCCC--CCCEeehh-Hce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCC
Confidence            456678999995  89999999 776    77899 999999999999999999987   699999999843

>KOG0541|consensus

Probab=99.26  E-value=2.5e-11  Score=97.94  Aligned_cols=114  Identities=20%  Similarity=0.278  Sum_probs=91.7

Q ss_pred             cccccCCCCC--cE-EecC----CCCeEEecccCCCCeEEEEEEcCCCCcccH-HHHHHHHHHHHHHHhCCc-EEEEEeC
Q psy1172         152 DRFAAALLPG--CS-LLGC----QASLVILECSIPAFWGILFSHPSDFTPVCT-TELARVLQLIKEFEQRTC-KVIALSC  222 (276)
Q Consensus       152 ~~~~G~~aPd--F~-L~~~----~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~-~el~~l~~~~~~~~~~gv-~Vv~VS~  222 (276)
                      .+.+|+..|+  .+ +.+.    .+.++++++.++||.+||+-.|++++|+|. .++|.+.+..++|+.+|+ +|++||+
T Consensus         8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV   87 (171)
T KOG0541|consen    8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV   87 (171)
T ss_pred             cccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence            3468999999  33 1221    122788888899999999999999999955 779999999999999999 6889999


Q ss_pred             CChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCcc
Q psy1172         223 DSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYL  272 (276)
Q Consensus       223 D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~l  272 (276)
                      |+++..++|.+.+.+    +-...|++|..+.   +.+.+|+..+..+.+
T Consensus        88 nDpFv~~aW~k~~g~----~~~V~f~aD~~g~---ftk~lgleld~~d~~  130 (171)
T KOG0541|consen   88 NDPFVMKAWAKSLGA----NDHVKFVADPAGE---FTKSLGLELDLSDKL  130 (171)
T ss_pred             CcHHHHHHHHhhcCc----cceEEEEecCCCc---eeeeccceeeecccc
Confidence            999999999999943    3368899997664   677888877765543

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.00  E-value=3.3e-09  Score=89.18  Aligned_cols=105  Identities=21%  Similarity=0.313  Sum_probs=81.4

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCC-cccHHHHHHHHHHHHHHHhC--CcEEEEEeCCC----hHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFT-PVCTTELARVLQLIKEFEQR--TCKVIALSCDS----VES  227 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~c-p~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~----~~~  227 (276)
                      .....|+|+|.|.+|+.++++ +++||++||+|. -+.| ..|...+..|.++.+++.+.  .++++.||+|+    ++.
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~-~~~Gk~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~  105 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLD-DLKGKWVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEV  105 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGG-GGTTSEEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHH
T ss_pred             CCccCCCcEEEcCCCCEecHH-HhCCCeEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHH
Confidence            345679999999999999998 899999999999 5556 57999999999999999875  68999999975    567


Q ss_pred             HHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         228 HHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ++++.+.+      +..+..+.....++.++++.|++...
T Consensus       106 L~~Y~~~~------~~~~~~ltg~~~~i~~l~~~~~v~~~  139 (174)
T PF02630_consen  106 LKKYAKKF------GPDFIGLTGSREEIEELAKQFGVYYE  139 (174)
T ss_dssp             HHHHHHCH------TTTCEEEEEEHHHHHHHHHHCTHCEE
T ss_pred             HHHHHHhc------CCCcceeEeCHHHHHHHHHHHHhhhc
Confidence            77777776      44455554444466667888887653

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.89  E-value=1.9e-09  Score=88.75  Aligned_cols=48  Identities=17%  Similarity=0.225  Sum_probs=40.6

Q ss_pred             CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         169 ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       169 G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      |+.++++     ++.||+|| ++|||+|++|+|.|+++++++   |+.|++||.|..
T Consensus        44 G~~~~l~-----~~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~   91 (153)
T TIGR02738        44 GRHANQD-----DYALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ   91 (153)
T ss_pred             chhhhcC-----CCEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence            6666655     34599999 999999999999999999887   589999999853

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.82  E-value=1.6e-08  Score=84.32  Aligned_cols=68  Identities=28%  Similarity=0.383  Sum_probs=53.9

Q ss_pred             CCCC-ceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEec-CCCCCCCHHHHHHHHHh
Q psy1172          17 GKLP-YPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLY-PATTGRNFDEILRVLDS   87 (276)
Q Consensus        17 ~~l~-fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~-~~~~~r~~~eilr~l~~   87 (276)
                      .+++ ||+++| ++++++++||+..... ...|+  +.|++||||++|+|++++++ .....+++++++++|++
T Consensus        97 ~~~~~~~~lsD~~~~~~~~~~gv~~~~~-~~~g~--~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~  167 (167)
T PRK00522         97 EGLENVITLSDFRDHSFGKAYGVAIAEG-PLKGL--LARAVFVLDENNKVVYSELVPEITNEPDYDAALAALKA  167 (167)
T ss_pred             CCCCCceEeecCCccHHHHHhCCeeccc-ccCCc--eeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence            4476 899999 5669999999975421 11254  68999999999999999974 56778899999999864

>KOG2501|consensus

Probab=98.80  E-value=2.1e-08  Score=81.91  Aligned_cols=99  Identities=12%  Similarity=0.057  Sum_probs=70.8

Q ss_pred             cEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCC-hHHHHHHHHHHHhc
Q psy1172         162 CSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDS-VESHHDWIKALVRD  238 (276)
Q Consensus       162 F~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~-~~~~~~~~~~~~~~  238 (276)
                      ..|...+|..+..++.++||.|.|+|= +.|||+|+.-.|.|.++|++.++.+  ++||-||.|. .++...+...+   
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~---   90 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH---   90 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc---
Confidence            677888888888777899976555555 9999999999999999999997664  8999999985 45555555444   


Q ss_pred             ccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         239 CILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       239 ~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                         ...+..+--.+....+..+.|+|...
T Consensus        91 ---~~~W~~iPf~d~~~~~l~~ky~v~~i  116 (157)
T KOG2501|consen   91 ---HGDWLAIPFGDDLIQKLSEKYEVKGI  116 (157)
T ss_pred             ---CCCeEEecCCCHHHHHHHHhcccCcC
Confidence               33333332223344455777887543

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.75  E-value=2.6e-08  Score=76.29  Aligned_cols=55  Identities=7%  Similarity=0.012  Sum_probs=46.8

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+|+++||.|| ++||++|+..+|.|+++++++  .++.++.|+.|......++++++
T Consensus        13 ~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~   67 (103)
T cd02985          13 AKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRRE   67 (103)
T ss_pred             cCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHc
Confidence            46899999999 999999999999999999998  56899999998654445666666

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.72  E-value=5.7e-08  Score=79.49  Aligned_cols=69  Identities=25%  Similarity=0.329  Sum_probs=53.0

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD   86 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~   86 (276)
                      .+++||+++|+++.++++||+.........+.....|++||||++|+|++++. ...++++.+++|+.++
T Consensus        85 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~-g~~~~~~~~~~~~~~~  153 (154)
T PRK09437         85 ELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD-KFKTSNHHDVVLDYLK  153 (154)
T ss_pred             hCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc-CCCcchhHHHHHHHHh
Confidence            45899999999999999999875432111111123589999999999999987 5567788999998875

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=98.71  E-value=3.5e-08  Score=81.39  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             CCceEEEeCccHHHHHhCCCCCCCCCCCCC-CcccceEEEECCCCcEEEEEecCCCCCC
Q psy1172          19 LPYPIIADQDRSLAVQLGMLDPVEKDSKGM-PLTCRAVFIIDPAKKLRLSFLYPATTGR   76 (276)
Q Consensus        19 l~fpllsD~~~~va~~yG~~~~~~~~~~g~-~~~~R~tfiIdp~g~I~~~~~~~~~~~r   76 (276)
                      ++||||||++++++++|||+.+...  .|. ..+.|++|||| +|+|+++++.+...+.
T Consensus        90 ~~f~lLsD~~~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~~  145 (155)
T cd03013          90 DKIRFLADGNGEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEEDPGDV  145 (155)
T ss_pred             CcEEEEECCCHHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecCCCCc
Confidence            3899999999999999999876431  122 12579999999 7999999997766444

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=98.69  E-value=1.4e-07  Score=81.55  Aligned_cols=103  Identities=15%  Similarity=0.174  Sum_probs=81.2

Q ss_pred             CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHH---hCCcEEEEEeCCChHHHHHHHHHHH
Q psy1172         161 GCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFE---QRTCKVIALSCDSVESHHDWIKALV  236 (276)
Q Consensus       161 dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~---~~gv~Vv~VS~D~~~~~~~~~~~~~  236 (276)
                      +|+|.|.+|+.+++. +++||+.+|+|. =++|| .|..++..|.+..+++.   ..+++|+.||+|+.....+..+++.
T Consensus        49 ~f~l~d~~G~~~~~~-~l~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~  126 (207)
T COG1999          49 DFELTDQDGKPFTLK-DLKGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA  126 (207)
T ss_pred             ceeeecCCCCEeecc-ccCCCEEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence            899999999999999 899999999998 55666 79999999999999987   4568999999987655555555554


Q ss_pred             hcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172         237 RDCILGLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       237 ~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      + .+....+..+........+++++|++..
T Consensus       127 ~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~  155 (207)
T COG1999         127 E-LNFDPRWIGLTGTPEQIEEVAKAYGVFY  155 (207)
T ss_pred             c-ccCCCCeeeeeCCHHHHHHHHHHhccee
Confidence            3 1124457777776556666799999985

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.62  E-value=8e-08  Score=73.43  Aligned_cols=47  Identities=6%  Similarity=0.130  Sum_probs=41.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .+++++|.|| ++||++|+..+|.|.++++++++..+.++.|+.|.++
T Consensus        16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~   62 (102)
T cd02948          16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTID   62 (102)
T ss_pred             cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHH
Confidence            4789999999 9999999999999999999997666888999988543

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=98.60  E-value=5.6e-08  Score=79.02  Aligned_cols=85  Identities=16%  Similarity=0.104  Sum_probs=57.6

Q ss_pred             EecCCCCeEEeccc-CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCC
Q psy1172         164 LLGCQASLVILECS-IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG  242 (276)
Q Consensus       164 L~~~~G~~v~l~~~-~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~  242 (276)
                      |++.++....+++. .+|+++||+|| +.||++|+..+|.|.+++++|.+ .+.++.|++|.... ....+++.   -.+
T Consensus         3 ~~~~~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~-~~~~~~~~---V~~   76 (142)
T cd02950           3 LEQLAASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKW-LPEIDRYR---VDG   76 (142)
T ss_pred             hHHHhhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCccc-HHHHHHcC---CCC
Confidence            44444444444422 36899999999 99999999999999999999864 47899999886421 22334441   124


Q ss_pred             eeEEEeeCCcch
Q psy1172         243 LLINLSVDDFKE  254 (276)
Q Consensus       243 ~~~~~l~D~~~~  254 (276)
                      ++..++.|.++.
T Consensus        77 iPt~v~~~~~G~   88 (142)
T cd02950          77 IPHFVFLDREGN   88 (142)
T ss_pred             CCEEEEECCCCC
Confidence            566666665443

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.60  E-value=1.7e-07  Score=75.83  Aligned_cols=65  Identities=26%  Similarity=0.439  Sum_probs=56.2

Q ss_pred             CCCCceEEEeCc--cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172          17 GKLPYPIIADQD--RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS   87 (276)
Q Consensus        17 ~~l~fpllsD~~--~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~   87 (276)
                      ++++||+++|.+  +++++.||+.....    |+  +.|++||||++|+|++.+..+...+++..++.++|++
T Consensus        83 ~~~~~~~~~D~~~~~~~~~~~g~~~~~~----~~--~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~  149 (149)
T cd03018          83 NGLTFPLLSDFWPHGEVAKAYGVFDEDL----GV--AERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALDA  149 (149)
T ss_pred             cCCCceEecCCCchhHHHHHhCCccccC----CC--ccceEEEECCCCEEEEEEecCCcccccchhHHHHhhC
Confidence            458999999988  99999999975432    33  5689999999999999999999899999999998875

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.57  E-value=2.2e-07  Score=74.36  Aligned_cols=63  Identities=27%  Similarity=0.424  Sum_probs=51.4

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHH
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILR   83 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr   83 (276)
                      .+++||+++|++++++++||+......   +...+.|++||||++|+|++++. ....+++++|+++
T Consensus        78 ~~~~~~~l~D~~~~~~~~~gv~~~~~~---~~~~~~p~~~lid~~G~v~~~~~-g~~~~~~~~~~~~  140 (140)
T cd03017          78 YGLPFPLLSDPDGKLAKAYGVWGEKKK---KYMGIERSTFLIDPDGKIVKVWR-KVKPKGHAEEVLE  140 (140)
T ss_pred             hCCCceEEECCccHHHHHhCCcccccc---ccCCcceeEEEECCCCEEEEEEe-cCCccchHHHHhC
Confidence            458999999999999999998764321   12225689999999999999996 5669999999874

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.55  E-value=1.2e-07  Score=72.39  Aligned_cols=45  Identities=9%  Similarity=0.068  Sum_probs=40.1

Q ss_pred             ccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         176 CSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       176 ~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .+++||+++|.|| ++||++|+..+|.|+++++++.  ++.++.|..+
T Consensus        14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~   58 (100)
T cd02999          14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEES   58 (100)
T ss_pred             HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence            3679999999999 9999999999999999999984  5788888665

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG2792|consensus

Probab=98.55  E-value=3.1e-07  Score=80.24  Aligned_cols=101  Identities=16%  Similarity=0.305  Sum_probs=76.9

Q ss_pred             CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHHhCC-cE--EEEEeCCC----hHHHHHH
Q psy1172         160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFEQRT-CK--VIALSCDS----VESHHDW  231 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~~~g-v~--Vv~VS~D~----~~~~~~~  231 (276)
                      -+|+|.|.+|+.++-. +|.|||++|+|- -++|| .|..|+..|.+..+++++.- +.  =|.||+|+    ++..+++
T Consensus       120 GpF~L~d~~Gk~~te~-df~Gkw~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY  197 (280)
T KOG2792|consen  120 GPFSLVDHDGKRVTEK-DFLGKWSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY  197 (280)
T ss_pred             CceEEEecCCCeeccc-ccccceEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence            6899999999999988 999999999999 77787 69999999999999997653 32  37788876    4555555


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .+.+      ...+--|.....++.++++.|.|+...
T Consensus       198 ~~eF------~pkllGLTGT~eqvk~vak~yRVYfs~  228 (280)
T KOG2792|consen  198 VSEF------HPKLLGLTGTTEQVKQVAKKYRVYFST  228 (280)
T ss_pred             HHhc------ChhhhcccCCHHHHHHHHHHhEEeecc
Confidence            5555      333444445555666679999998664

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.52  E-value=3.5e-07  Score=73.76  Aligned_cols=58  Identities=28%  Similarity=0.378  Sum_probs=48.3

Q ss_pred             CceEEEeCc-cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHH
Q psy1172          20 PYPIIADQD-RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILR   83 (276)
Q Consensus        20 ~fpllsD~~-~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr   83 (276)
                      +||+++|+. ++++++||+..+..    |+  +.|++||||++|+|++++..+ ....++++++|+
T Consensus        83 ~~~~l~D~~~~~~~~~~gv~~~~~----~~--~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~  142 (143)
T cd03014          83 NVTTLSDFRDHSFGKAYGVLIKDL----GL--LARAVFVIDENGKVIYVELVPEITDEPDYEAALA  142 (143)
T ss_pred             CceEeecCcccHHHHHhCCeeccC----Cc--cceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence            799999996 99999999976542    43  579999999999999999844 456778888875

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.51  E-value=7.2e-07  Score=69.05  Aligned_cols=79  Identities=13%  Similarity=0.218  Sum_probs=63.7

Q ss_pred             CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------ChHHHHHHH
Q psy1172         161 GCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SVESHHDWI  232 (276)
Q Consensus       161 dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~~~~~~~~  232 (276)
                      +|++++.+|+.++|+ .|+||+++|+=. |+-|+.-. +...|++++++|+++|++|++.=.+        +.+..+.++
T Consensus         3 df~~~~~~G~~v~l~-~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~   79 (108)
T PF00255_consen    3 DFSAKDIDGKPVSLS-KYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC   79 (108)
T ss_dssp             GSEEEBTTSSEEEGG-GGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred             ceeeeCCCCCEECHH-HcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence            689999999999999 999998877777 99999988 9999999999999999999998432        234444444


Q ss_pred             HH-HHhcccCCeeEEEe
Q psy1172         233 KA-LVRDCILGLLINLS  248 (276)
Q Consensus       233 ~~-~~~~~~~~~~~~~l  248 (276)
                      .. +      +..|++.
T Consensus        80 ~~~~------~~~F~vf   90 (108)
T PF00255_consen   80 KEKF------GVTFPVF   90 (108)
T ss_dssp             CHCH------T-SSEEB
T ss_pred             Hhcc------CCcccce
Confidence            44 3      5567776

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>TIGR02740 TraF-like TraF-like protein

Probab=98.43  E-value=2.7e-07  Score=82.89  Aligned_cols=62  Identities=13%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             CCCCcEEecCC-----CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         158 LLPGCSLLGCQ-----ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       158 ~aPdF~L~~~~-----G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +++.|.+....     .+...++ +++|+++||+|| ++|||+|..++|.|+++++++   |+.|++||+|.
T Consensus       140 P~~~~a~~~~~~~~~~~~~~~l~-~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~  206 (271)
T TIGR02740       140 PVSTLALDAHDTTAKKQKDRVMK-DLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG  206 (271)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHH-HhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC
Confidence            45666555432     2345677 789999999999 999999999999999998887   58999999985

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.39  E-value=8.9e-07  Score=68.73  Aligned_cols=47  Identities=13%  Similarity=0.027  Sum_probs=42.5

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+|++++|.|| +.||++|+...|.+.++.+++++.++.+..|+.|..
T Consensus        22 ~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~   68 (111)
T cd02963          22 SFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE   68 (111)
T ss_pred             cCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence            36899999999 999999999999999999999877888999988753

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.2e-06  Score=69.58  Aligned_cols=84  Identities=12%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------CChHHHH
Q psy1172         158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------DSVESHH  229 (276)
Q Consensus       158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D~~~~~~  229 (276)
                      .+=||++++.+|+.++|+ +|+||.++|+-- |+.|.... |-..|+.+|++|+++|+.|++.-.        .+.+..+
T Consensus         4 ~~yd~~~~~~~G~~~~l~-~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~   80 (162)
T COG0386           4 SIYDFSVKDIDGEPVSLS-DYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA   80 (162)
T ss_pred             ccccceeeccCCCCccHH-HhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence            356899999999999999 899997776666 99999887 889999999999999999999844        2345666


Q ss_pred             HHHHHHHhcccCCeeEEEee
Q psy1172         230 DWIKALVRDCILGLLINLSV  249 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~  249 (276)
                      +|++..     .+..||+++
T Consensus        81 ~fC~~~-----YgVtFp~f~   95 (162)
T COG0386          81 KFCQLN-----YGVTFPMFS   95 (162)
T ss_pred             HHHHhc-----cCceeeeee
Confidence            665544     256788774

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.26  E-value=2.4e-06  Score=63.98  Aligned_cols=46  Identities=13%  Similarity=0.167  Sum_probs=39.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      +|++++|+|| ++||++|+...|.|+++++.+.+ .+.++.|+.|...
T Consensus        11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~   56 (96)
T cd02956          11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQP   56 (96)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCH
Confidence            4789999999 99999999999999999999854 4778888887643

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.25  E-value=5.6e-06  Score=68.95  Aligned_cols=62  Identities=21%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC-----CHHHHHHHHHhhcc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR-----NFDEILRVLDSLQL   90 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r-----~~~eilr~l~~lq~   90 (276)
                      .+++||+++|+++.+++.||+.        +    .+++||||++|+|++...+....++     +..++.++|+++..
T Consensus        87 ~~~~~~~l~D~~~~~~~~~~v~--------~----~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  153 (171)
T cd02969          87 HGYPFPYLLDETQEVAKAYGAA--------C----TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA  153 (171)
T ss_pred             CCCCceEEECCchHHHHHcCCC--------c----CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence            4588999999999999999985        1    3689999999999988766544332     46889999988763

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.25  E-value=1.7e-06  Score=66.75  Aligned_cols=45  Identities=16%  Similarity=0.235  Sum_probs=41.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .|++++|.|| ++|||+|+...|.+.++++.+++.++.+..|..|.
T Consensus        20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~   64 (109)
T cd02993          20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG   64 (109)
T ss_pred             cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence            4789999999 99999999999999999999987789999998875

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.23  E-value=5.7e-06  Score=63.00  Aligned_cols=68  Identities=9%  Similarity=-0.015  Sum_probs=48.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHHHhcccCCeeEEEeeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDS-VESHHDWIKALVRDCILGLLINLSVDD  251 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~l~D~  251 (276)
                      .|++++|.|| ++||++|....+.+   .++.+.+.+ ++.++.|+++. .....++.+++.-.   ++|..++.+.
T Consensus        10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~---~~Pti~~~~~   81 (104)
T cd02953          10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVF---GPPTYLFYGP   81 (104)
T ss_pred             cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCC---CCCEEEEECC
Confidence            5789999999 99999999998877   567777755 78999998864 22345666666222   4565555554

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.23  E-value=2.3e-06  Score=68.94  Aligned_cols=53  Identities=30%  Similarity=0.558  Sum_probs=41.1

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCC-----------------CCCCCCcccceEEEECCCCcEEEEEe
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEK-----------------DSKGMPLTCRAVFIIDPAKKLRLSFL   69 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~-----------------~~~g~~~~~R~tfiIdp~g~I~~~~~   69 (276)
                      .+++||+++|++++++++||+......                 ...|.....|++||||++|+|++.++
T Consensus        78 ~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~  147 (149)
T cd02970          78 KFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV  147 (149)
T ss_pred             cCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence            569999999999999999999643210                 11122236899999999999999886

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.22  E-value=1.9e-06  Score=65.26  Aligned_cols=45  Identities=13%  Similarity=0.077  Sum_probs=39.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.||++|+...|.+.++.+++++. +.+..|+.|..
T Consensus        17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~   61 (101)
T cd03003          17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDD   61 (101)
T ss_pred             CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCcc
Confidence            4689999999 999999999999999999999643 78889998853

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.20  E-value=2.8e-06  Score=66.73  Aligned_cols=74  Identities=12%  Similarity=0.024  Sum_probs=47.5

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH-HHHHHHHHHHhcccCCeeEEEeeCCcchhh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE-SHHDWIKALVRDCILGLLINLSVDDFKEVE  256 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  256 (276)
                      .++|+++|.|| ++||++|+...+.+.+..+... ....++.|.+|... ..   .+.+... +-.+|.-++.++++...
T Consensus        17 ~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~---~~~~~~~-g~~vPt~~f~~~~Gk~~   90 (117)
T cd02959          17 DSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPK---DEEFSPD-GGYIPRILFLDPSGDVH   90 (117)
T ss_pred             HcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCch---hhhcccC-CCccceEEEECCCCCCc
Confidence            46899999999 9999999999999998766543 33456666665322 11   1223111 10257677778776643


Q ss_pred             h
Q psy1172         257 G  257 (276)
Q Consensus       257 ~  257 (276)
                      .
T Consensus        91 ~   91 (117)
T cd02959          91 P   91 (117)
T ss_pred             h
Confidence            3

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.19  E-value=3.7e-06  Score=64.16  Aligned_cols=45  Identities=9%  Similarity=-0.038  Sum_probs=38.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~  224 (276)
                      ++++++|.|| ++|||+|+..+|.|+++++++++.+  +.+..++.+.
T Consensus        14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~   60 (104)
T cd03000          14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA   60 (104)
T ss_pred             cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc
Confidence            4578999999 9999999999999999999997655  6666677654

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.17  E-value=3.9e-06  Score=68.99  Aligned_cols=46  Identities=9%  Similarity=0.112  Sum_probs=41.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++++||.|| ++||++|+...|.|+++.+++.+.++.++.|++|..
T Consensus        46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~   91 (152)
T cd02962          46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF   91 (152)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC
Confidence            4679999999 999999999999999999999777899999999854

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.16  E-value=6.5e-06  Score=64.88  Aligned_cols=69  Identities=12%  Similarity=0.000  Sum_probs=47.5

Q ss_pred             CC-CeEEEEEEcCCCCcccHHHHHHHH---HHHHHHHhCCcEEEEEeCCChH----------HHHHHHHHHHhcccCCee
Q psy1172         179 PA-FWGILFSHPSDFTPVCTTELARVL---QLIKEFEQRTCKVIALSCDSVE----------SHHDWIKALVRDCILGLL  244 (276)
Q Consensus       179 ~g-k~vvL~f~pa~~cp~C~~el~~l~---~~~~~~~~~gv~Vv~VS~D~~~----------~~~~~~~~~~~~~~~~~~  244 (276)
                      .| |+++|+|| ++||++|+...+.+.   ++.+.++ .++.++.|++|...          ...++..++.-.   .+|
T Consensus        12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~---~~P   86 (125)
T cd02951          12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR---FTP   86 (125)
T ss_pred             cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc---ccc
Confidence            46 89999999 999999999998875   4555554 46888999987531          123444555211   456


Q ss_pred             EEEeeCCc
Q psy1172         245 INLSVDDF  252 (276)
Q Consensus       245 ~~~l~D~~  252 (276)
                      ..++.+.+
T Consensus        87 t~~~~~~~   94 (125)
T cd02951          87 TVIFLDPE   94 (125)
T ss_pred             EEEEEcCC
Confidence            66676765

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.13  E-value=5.9e-06  Score=64.59  Aligned_cols=46  Identities=13%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .++++||.|| ++||++|+.-.|.|.++.+++.+. +.++-|++|...
T Consensus        13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~   58 (114)
T cd02954          13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVP   58 (114)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCH
Confidence            4679999999 999999999999999999998533 688999998643

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0855|consensus

Probab=98.12  E-value=7.7e-06  Score=67.15  Aligned_cols=70  Identities=23%  Similarity=0.305  Sum_probs=59.2

Q ss_pred             CCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172          13 GEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS   87 (276)
Q Consensus        13 ~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~   87 (276)
                      |-|+++|||-||||+.+++.+.+|+-.....   |  ++.|++||.|..|....+....+++.-+++|.+..|.+
T Consensus       141 F~sKqnlPYhLLSDpk~e~ik~lGa~k~p~g---g--~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~  210 (211)
T KOG0855|consen  141 FASKQNLPYHLLSDPKNEVIKDLGAPKDPFG---G--LPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA  210 (211)
T ss_pred             hhhhccCCeeeecCcchhHHHHhCCCCCCCC---C--cccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence            4467999999999999999999998643221   3  36899999999999999998889999999999988864

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.11  E-value=1.1e-05  Score=64.34  Aligned_cols=60  Identities=40%  Similarity=0.617  Sum_probs=46.0

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +++||+++|+++.++++||+......   +-..+.|++||||++|+|++++..+.....+.+.
T Consensus        79 ~~~~~~l~D~~~~~~~~~g~~~~~~~---~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~~  138 (140)
T cd02971          79 GLNFPLLSDPDGEFAKAYGVLIEKSA---GGGLAARATFIIDPDGKIRYVEVEPLPTGRNAEE  138 (140)
T ss_pred             CCCceEEECCChHHHHHcCCcccccc---ccCceeEEEEEECCCCcEEEEEecCCCCCcChHh
Confidence            68999999999999999999854321   1112579999999999999999977663334433

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.09  E-value=8.4e-06  Score=63.69  Aligned_cols=46  Identities=9%  Similarity=0.130  Sum_probs=39.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .+++++|.|| +.||++|+..+|.|.++.+++++. +.++.|+.|...
T Consensus        28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~   73 (113)
T cd03006          28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ   73 (113)
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh
Confidence            4679999999 999999999999999999999654 788899887543

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0907|consensus

Probab=98.07  E-value=7.8e-06  Score=63.16  Aligned_cols=51  Identities=8%  Similarity=0.128  Sum_probs=43.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+|.+|+.|+ ++||++|+.-.|.|.++..+|.+  +.++-|++|.   ....++.+
T Consensus        20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~   70 (106)
T KOG0907|consen   20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEF   70 (106)
T ss_pred             CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhc
Confidence            3588999999 99999999999999999999955  9999999997   44555555

>PRK09381 trxA thioredoxin; Provisional

Probab=98.06  E-value=9.4e-06  Score=62.30  Aligned_cols=46  Identities=11%  Similarity=0.075  Sum_probs=40.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .+++++|.|| +.|||+|+..+|.|+++++++.+ ++.++.|+.|...
T Consensus        20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~   65 (109)
T PRK09381         20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNP   65 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCCh
Confidence            3679999999 99999999999999999999965 4889999987543

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.03  E-value=1.2e-05  Score=60.78  Aligned_cols=46  Identities=7%  Similarity=0.031  Sum_probs=39.2

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++|+ ++|.|| +.||++|+...|.+++++++++..++.+..|+.+..
T Consensus        15 ~~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~   60 (101)
T cd02994          15 LEGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE   60 (101)
T ss_pred             hCCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC
Confidence            4566 689999 999999999999999999988766788888887753

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.03  E-value=7.2e-06  Score=64.66  Aligned_cols=44  Identities=14%  Similarity=0.156  Sum_probs=39.5

Q ss_pred             CCCeEEEEEEcC-------CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPS-------DFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa-------~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +|++++|.|| |       +|||+|+...|.|.++.+++. .++.++-|.+|.
T Consensus        20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~   70 (119)
T cd02952          20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGD   70 (119)
T ss_pred             CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCC
Confidence            5889999999 8       999999999999999999985 358999999975

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.02  E-value=1e-05  Score=63.86  Aligned_cols=42  Identities=24%  Similarity=0.355  Sum_probs=37.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEec
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLY   70 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~   70 (276)
                      ++++||+++|+++++++.||+.        ++    +++||||++|+|++++..
T Consensus        83 ~~~~~p~~~D~~~~~~~~~~v~--------~~----P~~~vid~~G~v~~~~~G  124 (126)
T cd03012          83 YGITYPVANDNDYATWRAYGNQ--------YW----PALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             cCCCCCEEECCchHHHHHhCCC--------cC----CeEEEECCCCcEEEEEec
Confidence            6799999999999999999974        33    699999999999998864

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.02  E-value=1.4e-05  Score=62.32  Aligned_cols=52  Identities=12%  Similarity=0.078  Sum_probs=43.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++|+|||.|+ ++|||+|+..-|-|.++.+++.+. +.++-|.+|...   .+.+.+
T Consensus        13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~---dva~~y   64 (114)
T cd02986          13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVP---VYTQYF   64 (114)
T ss_pred             CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccH---HHHHhc
Confidence            5899999999 999999999999999999999433 889999998644   344555

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PHA02278 thioredoxin-like protein

Probab=98.01  E-value=1.3e-05  Score=61.54  Aligned_cols=44  Identities=11%  Similarity=0.038  Sum_probs=37.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +++++||.|| |+||++|+...|.|.++.+++. ..+.++-|++|.
T Consensus        13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~   56 (103)
T PHA02278         13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA   56 (103)
T ss_pred             CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence            5789999999 9999999999999999987753 336788888884

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.01  E-value=1.2e-05  Score=60.44  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=38.2

Q ss_pred             CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh--CCcEEEEEeCCCh
Q psy1172         181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQ--RTCKVIALSCDSV  225 (276)
Q Consensus       181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~--~gv~Vv~VS~D~~  225 (276)
                      ++++|.|| +.||++|+..+|.|+++++++++  ..+.++.|+.+..
T Consensus        17 ~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~   62 (102)
T cd03005          17 GNHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH   62 (102)
T ss_pred             CCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC
Confidence            46999999 99999999999999999999976  4688888887754

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.99  E-value=2e-05  Score=59.82  Aligned_cols=45  Identities=11%  Similarity=0.121  Sum_probs=38.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| ++||++|+...|.++++.+++. ..+.+..|+.+..
T Consensus        18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~   62 (104)
T cd03004          18 RKEPWLVDFY-APWCGPCQALLPELRKAARALK-GKVKVGSVDCQKY   62 (104)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCch
Confidence            3679999999 9999999999999999999984 3478888888753

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=97.99  E-value=1.4e-05  Score=62.33  Aligned_cols=45  Identities=40%  Similarity=0.715  Sum_probs=38.0

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLS   67 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~   67 (276)
                      ++++||+++|+++++++.||+..+..     . ...|++||||++|+|+++
T Consensus        80 ~~~~~~~~~D~~~~~~~~~~~~~~~~-----~-~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   80 YGLPFPVLSDPDGELAKAFGIEDEKD-----T-LALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HTCSSEEEEETTSHHHHHTTCEETTT-----S-EESEEEEEEETTSBEEEE
T ss_pred             hccccccccCcchHHHHHcCCccccC-----C-ceEeEEEEECCCCEEEeC
Confidence            45999999999999999999976541     1 256999999999999985

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=97.98  E-value=1e-05  Score=61.78  Aligned_cols=54  Identities=13%  Similarity=0.196  Sum_probs=43.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .|++++|.|| ++||++|+...|.|.++++++. ..+.++.|+.|... ..+..+++
T Consensus        17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~~~-~~~~~~~~   70 (109)
T cd03002          17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDEDK-NKPLCGKY   70 (109)
T ss_pred             CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCccc-cHHHHHHc
Confidence            4788999999 9999999999999999999985 34888999887532 23445555

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=97.97  E-value=1.7e-05  Score=64.37  Aligned_cols=52  Identities=8%  Similarity=0.086  Sum_probs=42.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++|||.|| ++||++|+...|.|.++.+++.+. +.|+-|.+|...   ++.+.+
T Consensus        22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~---dla~~y   73 (142)
T PLN00410         22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVP---DFNTMY   73 (142)
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCH---HHHHHc
Confidence            5789999999 999999999999999999998433 778999999644   344555

>KOG0910|consensus

Probab=97.93  E-value=1.5e-05  Score=64.69  Aligned_cols=52  Identities=12%  Similarity=0.165  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+.||+|.|| |.||.+|+.-.|.|+++..+|+. .+.+.-|++|+.-   +..+++
T Consensus        60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~---ela~~Y  111 (150)
T KOG0910|consen   60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHP---ELAEDY  111 (150)
T ss_pred             cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccccc---chHhhc
Confidence            4689999999 99999999999999999999943 3899999998643   234555

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.93  E-value=1.7e-05  Score=59.75  Aligned_cols=44  Identities=5%  Similarity=0.006  Sum_probs=38.3

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~  224 (276)
                      +++++|+|| ++||++|+..++.+.++.+.+++ ..+.+..|+.+.
T Consensus        18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~   62 (104)
T cd02995          18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA   62 (104)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence            589999999 99999999999999999999976 457777787764

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>KOG1651|consensus

Probab=97.91  E-value=1.6e-05  Score=65.33  Aligned_cols=64  Identities=9%  Similarity=0.183  Sum_probs=58.4

Q ss_pred             CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172         157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~  222 (276)
                      ..+=+|+.+|.+|+.++|+ .|+||.+++.=. |+.|..-..+-.+|++++++|+++|+.|++.--
T Consensus        12 ~siydf~~~d~~G~~v~l~-~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPC   75 (171)
T KOG1651|consen   12 GSIYDFSAKDLDGEYVSLS-QYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPC   75 (171)
T ss_pred             cceeeeEEecCCCCCccHH-HhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEecc
Confidence            4567999999999999999 999998888877 999999998889999999999999999999843

>PLN02412 probable glutathione peroxidase

Probab=97.89  E-value=1.5e-05  Score=66.51  Aligned_cols=67  Identities=13%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             CCCCceEEEe--Ccc-HHHHHhCCCCCCCCCCC--CCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIAD--QDR-SLAVQLGMLDPVEKDSK--GMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD--~~~-~va~~yG~~~~~~~~~~--g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||+++|  +++ .+++.|+.+........  ++. ..|++||||++|+|+..+..+++    .+++.+.|+++
T Consensus        92 ~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~-~~p~tflId~~G~vv~~~~g~~~----~~~l~~~i~~~  163 (167)
T PLN02412         92 FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIK-WNFTKFLVSKEGKVVQRYAPTTS----PLKIEKDIQNL  163 (167)
T ss_pred             cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcC-CCCeeEEECCCCcEEEEECCCCC----HHHHHHHHHHH
Confidence            5799999984  664 88899987644321111  122 36899999999999999975543    67777777765

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.88  E-value=3.9e-05  Score=57.71  Aligned_cols=45  Identities=16%  Similarity=0.193  Sum_probs=38.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++++|| +.||+.|+...+.++++.+++.+ ++.++.|+.|..
T Consensus        12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~   56 (97)
T cd02949          12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED   56 (97)
T ss_pred             CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC
Confidence            4688999999 99999999999999999999854 578888888753

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=97.87  E-value=0.00011  Score=62.89  Aligned_cols=102  Identities=12%  Similarity=0.100  Sum_probs=81.6

Q ss_pred             cCCCCCcEEecCCCCeEEecccCCCCe-EEEEEEc-----CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         156 AALLPGCSLLGCQASLVILECSIPAFW-GILFSHP-----SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       156 G~~aPdF~L~~~~G~~v~l~~~~~gk~-vvL~f~p-----a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      +..-.+..+.+.+|+ ++|.+.|.|+. +||+.|.     ..-||.|...+..++-...-+.++++.+++||-.+.+.+.
T Consensus        43 v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~  121 (211)
T PF05988_consen   43 VEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIE  121 (211)
T ss_pred             ccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHH
Confidence            444556777777876 89998999985 4444443     5789999999999988888899999999999999999999


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +|+++.      +..||.+|....+   +...|++...
T Consensus       122 afk~rm------GW~~pw~Ss~gs~---Fn~D~~~~~~  150 (211)
T PF05988_consen  122 AFKRRM------GWTFPWYSSYGSD---FNYDFGVSFD  150 (211)
T ss_pred             HHHHhc------CCCceEEEcCCCc---ccccccceec
Confidence            999999      8899999875433   4566777543

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.86  E-value=4.9e-05  Score=58.25  Aligned_cols=46  Identities=9%  Similarity=0.016  Sum_probs=37.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-----CcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-----TCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-----gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.||++|+...|.++++++++++.     .+.+..|+.|..
T Consensus        17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~   67 (108)
T cd02996          17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE   67 (108)
T ss_pred             cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence            3578999999 999999999999999999887542     366777877753

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.86  E-value=4.5e-05  Score=64.63  Aligned_cols=59  Identities=12%  Similarity=0.273  Sum_probs=43.8

Q ss_pred             CCCce---EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYP---IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fp---llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      +..||   ++.|+++.++++||+.        |+|   .++||||++|+|++....+++.. .+++++..|++|
T Consensus       121 ~~~~P~~~vllD~~g~v~~~~gv~--------~~P---~T~fVIDk~GkVv~~~~G~l~~e-e~e~~~~li~~l  182 (184)
T TIGR01626       121 KKENPWSQVVLDDKGAVKNAWQLN--------SED---SAIIVLDKTGKVKFVKEGALSDS-DIQTVISLVNGL  182 (184)
T ss_pred             cccCCcceEEECCcchHHHhcCCC--------CCC---ceEEEECCCCcEEEEEeCCCCHH-HHHHHHHHHHHH
Confidence            47787   9999999999999975        443   35599999999999999766422 344455555544

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.84  E-value=3e-05  Score=58.43  Aligned_cols=55  Identities=9%  Similarity=0.151  Sum_probs=41.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++++|.|| ++||++|+...+.++++.+.+... .+.++.|..+.. ....+.+++
T Consensus        16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~   71 (104)
T cd02997          16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEY   71 (104)
T ss_pred             hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhC
Confidence            4679999999 999999999999999999999753 356666776642 123444455

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00051 thioredoxin; Provisional

Probab=97.83  E-value=5.3e-05  Score=56.70  Aligned_cols=43  Identities=12%  Similarity=0.077  Sum_probs=37.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+++++|+|| ++||++|+...+.|.++.+++  .++.++.|+.+.
T Consensus        17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~   59 (98)
T PTZ00051         17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDE   59 (98)
T ss_pred             cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcc
Confidence            3679999999 999999999999999999876  457888888764

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.81  E-value=4.6e-05  Score=66.48  Aligned_cols=106  Identities=11%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             cccCCCCCcEEecCCCCe-EEecccC-C-CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC------C-
Q psy1172         154 FAAALLPGCSLLGCQASL-VILECSI-P-AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC------D-  223 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~-v~l~~~~-~-gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~------D-  223 (276)
                      ..|..|||+.+.+.+|+. .++. +| + ++|+||+|-.++ ||+-...+..|+++.++|.+. ++++.|-+      | 
T Consensus        74 ~~G~~APns~vv~l~g~~~~~il-df~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDg  150 (237)
T PF00837_consen   74 KLGGPAPNSPVVTLDGQRSCRIL-DFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDG  150 (237)
T ss_pred             eCCCCCCCCceEeeCCCcceeHH-HhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCC
Confidence            589999999999999988 8888 56 3 589999999666 999999999999999999764 34444422      1 


Q ss_pred             -----------ChHHHH---HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         224 -----------SVESHH---DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       224 -----------~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                                 .+.+++   ..++...++   ...+|++.|.-..  ...++||..-+
T Consensus       151 W~~~~~~~~i~qh~sledR~~aA~~l~~~---~~~~pi~vD~mdN--~~~~~YgA~Pe  203 (237)
T PF00837_consen  151 WAFGNNPYEIPQHRSLEDRLRAAKLLKEE---FPQCPIVVDTMDN--NFNKAYGALPE  203 (237)
T ss_pred             ccCCCCceeecCCCCHHHHHHHHHHHHhh---CCCCCEEEEccCC--HHHHHhCCCcc
Confidence                       111111   112223332   3468888886433  45788988654

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PRK10996 thioredoxin 2; Provisional

Probab=97.80  E-value=5.3e-05  Score=61.21  Aligned_cols=45  Identities=4%  Similarity=0.027  Sum_probs=39.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|+|| ++||++|+...+.|.++++++.+ ++.++.|+.|..
T Consensus        51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~   95 (139)
T PRK10996         51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE   95 (139)
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC
Confidence            4789999999 99999999999999999998754 588888887754

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=97.79  E-value=6.7e-05  Score=56.45  Aligned_cols=54  Identities=11%  Similarity=0.084  Sum_probs=42.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++++|.|| ++||++|+...+.+.++.++++. .++.++.|+.+..  ..+..+++
T Consensus        17 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~   71 (105)
T cd02998          17 DKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKY   71 (105)
T ss_pred             CCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhC
Confidence            3578999999 99999999999999999999873 4577888877652  23444555

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.78  E-value=1.5e-05  Score=67.43  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=43.2

Q ss_pred             CCCCceEEEe--CccHH-HHHhCCCCCCCC-------CCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172          17 GKLPYPIIAD--QDRSL-AVQLGMLDPVEK-------DSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD   86 (276)
Q Consensus        17 ~~l~fpllsD--~~~~v-a~~yG~~~~~~~-------~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~   86 (276)
                      .+++||+++|  .++.. ++.|+++.+...       ...+++ ..|++||||++|+|++.+..+..    .+++.+.|+
T Consensus       104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP-~~~~tflID~~G~Iv~~~~g~~~----~~~l~~~I~  178 (183)
T PTZ00256        104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIP-WNFAKFLIDGQGKVVKYFSPKVN----PNEMIQDIE  178 (183)
T ss_pred             cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccC-cceEEEEECCCCCEEEEECCCCC----HHHHHHHHH
Confidence            5699999977  56554 566654433221       112454 47899999999999999986554    444555554


Q ss_pred             hh
Q psy1172          87 SL   88 (276)
Q Consensus        87 ~l   88 (276)
                      .|
T Consensus       179 ~l  180 (183)
T PTZ00256        179 KL  180 (183)
T ss_pred             HH
Confidence            43

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=97.77  E-value=6.9e-05  Score=55.91  Aligned_cols=43  Identities=12%  Similarity=0.125  Sum_probs=37.1

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +++++|+|| ++||++|+...+.|.++.+++ ...+.++.|..+.
T Consensus        14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~   56 (97)
T cd02984          14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE   56 (97)
T ss_pred             CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc
Confidence            689999999 999999999999999999887 4567888876653

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.76  E-value=4.9e-05  Score=62.16  Aligned_cols=65  Identities=12%  Similarity=0.160  Sum_probs=42.1

Q ss_pred             CCCCceEEEeC---ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQ---DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~---~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||+++|.   +.....+|+......   .+++--.|++||||++|+|++.+.++.+    .+++.+.|+.|
T Consensus        85 ~~~~fp~~~d~~~~~~~~~~~~~~~~~~~---~~~p~~~~~tflID~~G~v~~~~~g~~~----~~~l~~~i~~l  152 (153)
T TIGR02540        85 YGVTFPMFSKIKILGSEAEPAFRFLVDSS---KKEPRWNFWKYLVNPEGQVVKFWRPEEP----VEEIRPEITAL  152 (153)
T ss_pred             cCCCCCccceEecCCCCCCcHHHHHHhcC---CCCCCCccEEEEEcCCCcEEEEECCCCC----HHHHHHHHHHh
Confidence            46999999982   333433333221110   1233226899999999999999986654    67777777654

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=97.73  E-value=6.8e-05  Score=56.11  Aligned_cols=45  Identities=9%  Similarity=0.032  Sum_probs=38.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC-cEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT-CKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g-v~Vv~VS~D~  224 (276)
                      ++++++|.|| ++||+.|+...+.++++.+.++..+ +.++.+..+.
T Consensus        12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   57 (102)
T TIGR01126        12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA   57 (102)
T ss_pred             cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc
Confidence            6889999999 9999999999999999999997654 6666666653

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.69  E-value=0.0001  Score=55.10  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=43.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++++||.|| +.||++|....|.|+++.+++.+ ++.++-|..+..   +...+++
T Consensus        16 ~~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~---~~l~~~~   67 (103)
T PF00085_consen   16 SDKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN---KELCKKY   67 (103)
T ss_dssp             TSSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS---HHHHHHT
T ss_pred             cCCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhcc---chhhhcc
Confidence            3689999999 99999999999999999999976 888988888743   3445555

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=97.68  E-value=0.00015  Score=56.44  Aligned_cols=54  Identities=9%  Similarity=0.143  Sum_probs=39.7

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-C-cEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-T-CKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-g-v~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +++++|.|| ++||++|+..++.++++.++|++. + +.+..|+.+.. ......+++
T Consensus        19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~   74 (114)
T cd02992          19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDF   74 (114)
T ss_pred             CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhC
Confidence            469999999 999999999999999999998653 2 56666665322 223444444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.67  E-value=7e-05  Score=71.97  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=42.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++++||.|| +.||++|+...|.|.++.++|++.++.|+.|+.|..
T Consensus       370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~  415 (463)
T TIGR00424       370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD  415 (463)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence            6789999999 999999999999999999999877889999998853

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.63  E-value=0.00015  Score=54.57  Aligned_cols=44  Identities=14%  Similarity=0.015  Sum_probs=37.6

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++++|.|| +.||++|+...|.|.++++++.. .+.++.+..+..
T Consensus        18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~   61 (103)
T cd03001          18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH   61 (103)
T ss_pred             CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch
Confidence            467999999 99999999999999999998854 478888887753

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=97.61  E-value=0.00019  Score=57.75  Aligned_cols=54  Identities=24%  Similarity=0.412  Sum_probs=41.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT   73 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~   73 (276)
                      .+++||++.|++++++++||+....... .|  +..+.+||||++|+|+++...+..
T Consensus        83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~--~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   83 YGINFPVLSDPDGALAKALGVTIMEDPG-NG--FGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             TTTTSEEEEETTSHHHHHTTCEEECCTT-TT--SSSSEEEEEETTSBEEEEEESSBT
T ss_pred             hCCCceEEechHHHHHHHhCCccccccc-cC--CeecEEEEEECCCEEEEEEeCCCC
Confidence            4589999999999999999974221111 12  235799999999999999996554

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.59  E-value=0.00017  Score=53.72  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=39.8

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .++++++++.|| +.|||+|...+|.|.++.+++.. .+.++.++..
T Consensus        29 ~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          29 ELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             hcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            455889999999 99999999999999999999865 6888888885

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=97.59  E-value=0.00029  Score=59.55  Aligned_cols=56  Identities=23%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             CCCCceE-EEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPI-IADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpl-lsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||+ +.|+++++++.||+.        |+    +++||||++|+|++.+..+++    .+++-+.|+.|
T Consensus       119 ~~~~~~~~~~D~~~~~~~~~gv~--------~~----P~t~vid~~G~i~~~~~G~~~----~~~l~~~i~~~  175 (185)
T PRK15412        119 LGNPYALSLFDGDGMLGLDLGVY--------GA----PETFLIDGNGIIRYRHAGDLN----PRVWESEIKPL  175 (185)
T ss_pred             cCCCCceEEEcCCccHHHhcCCC--------cC----CeEEEECCCceEEEEEecCCC----HHHHHHHHHHH
Confidence            4589994 899999999999975        33    589999999999999987664    44444444443

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.59  E-value=0.00019  Score=59.97  Aligned_cols=55  Identities=20%  Similarity=0.292  Sum_probs=43.1

Q ss_pred             CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172          17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS   87 (276)
Q Consensus        17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~   87 (276)
                      ++++|| ++.|++++++++||+.        |+    +++|+||++|+|++.+...++    .+++...|+.
T Consensus       114 ~~~~f~~v~~D~~~~~~~~~~v~--------~~----P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~~  169 (173)
T TIGR00385       114 LGNPYQAILIDPNGKLGLDLGVY--------GA----PETFLVDGNGVILYRHAGPLN----NEVWTEGFLP  169 (173)
T ss_pred             cCCCCceEEECCCCchHHhcCCe--------eC----CeEEEEcCCceEEEEEeccCC----HHHHHHHHHH
Confidence            458898 6789999999999985        33    699999999999999885443    5565555554

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.58  E-value=0.0002  Score=56.66  Aligned_cols=41  Identities=7%  Similarity=0.149  Sum_probs=35.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .|+.++|+|+ ++|||+|+.-.|.|.++.++   .+..|+-|++|
T Consensus        22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd   62 (122)
T TIGR01295        22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSE   62 (122)
T ss_pred             cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECC
Confidence            3677899999 99999999999999999887   44779999887

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=97.55  E-value=0.0004  Score=57.42  Aligned_cols=57  Identities=18%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||++.|.++.+++.||+.        +    .+++||||++|+|+..+....    +.+++.+.|+++.
T Consensus       116 ~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~g~i~~~~~g~~----~~~~l~~~l~~~~  172 (173)
T PRK03147        116 YGLTFPVAIDKGRQVIDAYGVG--------P----LPTTFLIDKDGKVVKVITGEM----TEEQLEEYLEKIK  172 (173)
T ss_pred             hCCCceEEECCcchHHHHcCCC--------C----cCeEEEECCCCcEEEEEeCCC----CHHHHHHHHHHhc
Confidence            4589999999999999999984        2    369999999999998876544    3677777776653

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.54  E-value=0.00019  Score=55.64  Aligned_cols=49  Identities=10%  Similarity=0.132  Sum_probs=40.1

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +++++|.|| +.||++|+...|.|+++.+++.  ++.++-|+.+..    ...+++
T Consensus        24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~----~l~~~~   72 (113)
T cd02957          24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----FLVNYL   72 (113)
T ss_pred             CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh----HHHHhc
Confidence            579999999 9999999999999999999884  577888877643    445555

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>TIGR01068 thioredoxin thioredoxin

Probab=97.53  E-value=0.00022  Score=53.04  Aligned_cols=44  Identities=18%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++++|.|| +.||++|+...+.|+++.+++. ..+.++.|..+..
T Consensus        14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~   57 (101)
T TIGR01068        14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDEN   57 (101)
T ss_pred             CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCC
Confidence            569999999 9999999999999999998885 3588999988754

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.50  E-value=0.00028  Score=52.06  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=42.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHH-hCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFE-QRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~-~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++++|.|| +.||++|+...+.+.+..+.++ ..++.++.|+.+.   .....+++
T Consensus        14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~   67 (101)
T cd02961          14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEY   67 (101)
T ss_pred             CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhC
Confidence            4558999999 9999999999999999999985 4568888888765   23444555

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PLN02309 5'-adenylylsulfate reductase

Probab=97.43  E-value=0.00023  Score=68.39  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=41.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .++++||.|| +.||++|+...|.|.++.++|...++.|+.|+.|
T Consensus       364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d  407 (457)
T PLN02309        364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD  407 (457)
T ss_pred             CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            5789999999 9999999999999999999998888999999988

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00024  Score=63.81  Aligned_cols=45  Identities=13%  Similarity=0.232  Sum_probs=39.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +-+|||+.|| +.||++|..-+|.|.++..+++.+ +.+.-|++|..
T Consensus        42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~~   86 (304)
T COG3118          42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDAE   86 (304)
T ss_pred             cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCcc
Confidence            4579999999 999999999999999999998543 77778888853

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.42  E-value=0.00046  Score=53.73  Aligned_cols=44  Identities=11%  Similarity=-0.025  Sum_probs=38.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.||++|+...|.|.++.+++  .++.++-|..|..
T Consensus        21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~   64 (113)
T cd02989          21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKA   64 (113)
T ss_pred             CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccC
Confidence            3578999999 999999999999999999887  4588888888754

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.41  E-value=0.00027  Score=61.75  Aligned_cols=43  Identities=12%  Similarity=0.028  Sum_probs=35.9

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +++++|.|| +.||++|+...|.++++++++++ .+.+..|..+.
T Consensus        52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~   94 (224)
T PTZ00443         52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATR   94 (224)
T ss_pred             CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc
Confidence            578999999 99999999999999999999864 36666666553

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.40  E-value=0.00026  Score=54.26  Aligned_cols=47  Identities=11%  Similarity=0.125  Sum_probs=33.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHH--HHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIK--EFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~--~~~~~gv~Vv~VS~D~~~  226 (276)
                      .||++|++|| ..|||+|++..+.+.+..+  .+-..++.++.++.++..
T Consensus         4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (112)
T PF13098_consen    4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSR   52 (112)
T ss_dssp             TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHH
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcc
Confidence            5899999999 9999999988777775433  111336889999987654

...

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.38  E-value=0.00019  Score=57.33  Aligned_cols=52  Identities=15%  Similarity=0.158  Sum_probs=38.3

Q ss_pred             CCCCceEEEeCc---cHHHHHhCCCCCCCCC---CCCCCcccceEEEECCCCcEEEEEe
Q psy1172          17 GKLPYPIIADQD---RSLAVQLGMLDPVEKD---SKGMPLTCRAVFIIDPAKKLRLSFL   69 (276)
Q Consensus        17 ~~l~fpllsD~~---~~va~~yG~~~~~~~~---~~g~~~~~R~tfiIdp~g~I~~~~~   69 (276)
                      ++++||+++|++   +++++.||+.......   ..++. ..|++|||||+|+|++++.
T Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~lid~~G~i~~~~~  141 (142)
T cd02968          84 FGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVD-HSAAIYLVDPDGKLVRYYG  141 (142)
T ss_pred             hCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEe-ccceEEEECCCCCEEEeec
Confidence            458999999975   7999999987532110   11222 3689999999999999875

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.33  E-value=0.0011  Score=52.61  Aligned_cols=74  Identities=8%  Similarity=-0.071  Sum_probs=44.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHH-HH--HHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHHHhc-ccCCeeEEEeeCCcc
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELAR-VL--QLIKEFEQRTCKVIALSCDS-VESHHDWIKALVRD-CILGLLINLSVDDFK  253 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~-l~--~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~~~~-~~~~~~~~~l~D~~~  253 (276)
                      .+|+|+|.|+ ++||++|+.--.. +.  ++.+.+ .+++.+|-|..+. ++..+.+.+...+. +..+.|..++.++++
T Consensus        14 ~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G   91 (124)
T cd02955          14 EDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL   91 (124)
T ss_pred             cCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence            5899999999 9999999966542 22  233333 3457777776653 33333333322111 122678888888876


Q ss_pred             h
Q psy1172         254 E  254 (276)
Q Consensus       254 ~  254 (276)
                      .
T Consensus        92 ~   92 (124)
T cd02955          92 K   92 (124)
T ss_pred             C
Confidence            5

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.33  E-value=0.00063  Score=52.91  Aligned_cols=43  Identities=14%  Similarity=0.059  Sum_probs=35.2

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++.++++|| ++|||+|+.-.+.|.++.+++  ..++++-|+.|..
T Consensus        22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~   64 (113)
T cd02975          22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDED   64 (113)
T ss_pred             CeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcC
Confidence            456777777 999999999999999988876  4588888888753

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.32  E-value=0.00073  Score=48.67  Aligned_cols=42  Identities=14%  Similarity=0.111  Sum_probs=37.1

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +++++|.|| +.||+.|....+.++++.++  ..++.++.|+.+.
T Consensus        10 ~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~   51 (93)
T cd02947          10 AKPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE   51 (93)
T ss_pred             CCcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence            378999999 99999999999999998887  5778999999876

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.32  E-value=0.00053  Score=53.32  Aligned_cols=52  Identities=13%  Similarity=0.083  Sum_probs=41.6

Q ss_pred             CCCeEEEEEEcCCC--CcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDF--TPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~--cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .|+++||.|| +.|  ||.|....|.|.++.++|.++ +.++-|+.|...   +.+.++
T Consensus        26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~---~la~~f   79 (111)
T cd02965          26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQ---ALAARF   79 (111)
T ss_pred             CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCH---HHHHHc
Confidence            5688999999 886  999999999999999998544 678888887643   334555

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=97.30  E-value=0.00063  Score=67.42  Aligned_cols=71  Identities=13%  Similarity=-0.006  Sum_probs=49.6

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCCh-HHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDSV-ESHHDWIKALVRDCILGLLINLSVDDFK  253 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~~  253 (276)
                      .+||+|+|+|| ++||++|+...+..   .+..+++  +++.++-|+++.. ...+++.+++.-.   ++|.-++.|.++
T Consensus       472 ~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l--~~~~~v~vDvt~~~~~~~~l~~~~~v~---g~Pt~~~~~~~G  545 (571)
T PRK00293        472 GKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQAL--ADTVLLQADVTANNAEDVALLKHYNVL---GLPTILFFDAQG  545 (571)
T ss_pred             hcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHh--cCCEEEEEECCCCChhhHHHHHHcCCC---CCCEEEEECCCC
Confidence            45899999999 99999999876653   4555666  3578888887643 3445666666322   567667777665


Q ss_pred             h
Q psy1172         254 E  254 (276)
Q Consensus       254 ~  254 (276)
                      .
T Consensus       546 ~  546 (571)
T PRK00293        546 Q  546 (571)
T ss_pred             C
Confidence            4

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.19  E-value=0.0015  Score=42.81  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=37.2

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      ++.|| ++||+.|.+..+.+.+.  ++...++.++.++.+.......+
T Consensus         1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   45 (69)
T cd01659           1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE   45 (69)
T ss_pred             CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence            46788 99999999999999988  56678899999999876655444

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.18  E-value=0.00083  Score=56.48  Aligned_cols=42  Identities=14%  Similarity=0.148  Sum_probs=37.2

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +++|||.|| +.||++|..-.|.|.++.++|  ..+.++-|+.+.
T Consensus        83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~--~~vkF~kVd~d~  124 (175)
T cd02987          83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEY--PAVKFCKIRASA  124 (175)
T ss_pred             CcEEEEEEE-CCCCchHHHHHHHHHHHHHHC--CCeEEEEEeccc
Confidence            459999999 999999999999999999988  458888888875

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.15  E-value=0.0014  Score=47.04  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=33.6

Q ss_pred             EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         183 GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       183 vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .|..|| +.|||+|....+.|+++.+++.. .+.++-|+.+.
T Consensus         2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~   41 (82)
T TIGR00411         2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME   41 (82)
T ss_pred             EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc
Confidence            466788 99999999999999999998853 37888888764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=97.12  E-value=0.0014  Score=51.41  Aligned_cols=45  Identities=29%  Similarity=0.504  Sum_probs=37.1

Q ss_pred             CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172          17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT   73 (276)
Q Consensus        17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~   73 (276)
                      .+++|| ++.|.++++++.||+.        ++    +++||||++|+|+..+...++
T Consensus        77 ~~~~~~~~~~D~~~~~~~~~~v~--------~~----P~~~~ld~~G~v~~~~~G~~~  122 (127)
T cd03010          77 HGNPYAAVGFDPDGRVGIDLGVY--------GV----PETFLIDGDGIIRYKHVGPLT  122 (127)
T ss_pred             cCCCCceEEECCcchHHHhcCCC--------CC----CeEEEECCCceEEEEEeccCC
Confidence            457785 6799999999999986        33    689999999999999886544

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.10  E-value=0.00048  Score=56.20  Aligned_cols=56  Identities=13%  Similarity=0.128  Sum_probs=36.0

Q ss_pred             CCCCceEEEeC--ccH-HHHHhCCCCCCCCCC--CCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172          17 GKLPYPIIADQ--DRS-LAVQLGMLDPVEKDS--KGMPLTCRAVFIIDPAKKLRLSFLYPAT   73 (276)
Q Consensus        17 ~~l~fpllsD~--~~~-va~~yG~~~~~~~~~--~g~~~~~R~tfiIdp~g~I~~~~~~~~~   73 (276)
                      .+++||+++|.  ++. +++.||++......-  ..+. ..|++||||++|+|++.+..+++
T Consensus        84 ~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~ttflId~~G~i~~~~~G~~~  144 (152)
T cd00340          84 YGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIK-WNFTKFLVDRDGEVVKRFAPTTD  144 (152)
T ss_pred             cCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccc-cccEEEEECCCCcEEEEECCCCC
Confidence            46999999974  444 577777532111000  0011 25799999999999999986654

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.06  E-value=0.0031  Score=45.91  Aligned_cols=50  Identities=12%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHH--HHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQ--LIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~--~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      .||+++|.|+ ++||+.|+..-..+..  ...++-.+++..+-|..++.....
T Consensus        16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~   67 (82)
T PF13899_consen   16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA   67 (82)
T ss_dssp             HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH
T ss_pred             cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH
Confidence            5899999999 9999999988766522  223322467888888887765433

...

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.99  E-value=0.0016  Score=48.94  Aligned_cols=51  Identities=8%  Similarity=0.058  Sum_probs=41.1

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      |+++++.|+ +.||++|..-.+.|.++.++|+++ +.++-|+.|.-   ....+.+
T Consensus        12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~---~~~~~~~   62 (103)
T cd02982          12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDF---GRHLEYF   62 (103)
T ss_pred             CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhh---HHHHHHc
Confidence            789999999 999999999999999999999744 77777777642   2345555

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PTZ00102 disulphide isomerase; Provisional

Probab=96.95  E-value=0.0013  Score=63.24  Aligned_cols=45  Identities=9%  Similarity=0.008  Sum_probs=37.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC-cEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT-CKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g-v~Vv~VS~D~  224 (276)
                      .|++++|.|| +.||++|+...|.|+++.+.+++.+ +.+..|+.+.
T Consensus       374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~  419 (477)
T PTZ00102        374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA  419 (477)
T ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC
Confidence            4789999999 9999999999999999999987644 5566677654

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=96.94  E-value=0.0038  Score=48.46  Aligned_cols=50  Identities=18%  Similarity=0.246  Sum_probs=39.1

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHH
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILR   83 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr   83 (276)
                      ++++||++.|+++++++.||+.        +    .+++||||++| |++....-.+    .++|.+
T Consensus        71 ~~~~~~~~~d~~~~~~~~~~i~--------~----~P~~~vid~~g-i~~~~~g~~~----~~~~~~  120 (123)
T cd03011          71 KGYGFPVINDPDGVISARWGVS--------V----TPAIVIVDPGG-IVFVTTGVTS----EWGLRL  120 (123)
T ss_pred             cCCCccEEECCCcHHHHhCCCC--------c----ccEEEEEcCCC-eEEEEeccCC----HHHHHh
Confidence            4589999999999999999974        2    36999999999 8888764333    455543

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=96.93  E-value=0.0018  Score=61.64  Aligned_cols=45  Identities=7%  Similarity=0.099  Sum_probs=38.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~  224 (276)
                      ++++++|.|| +.||++|...+|.+.++++.+++.+  +.++.|..+.
T Consensus        17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~   63 (462)
T TIGR01130        17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE   63 (462)
T ss_pred             cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC
Confidence            4678999999 9999999999999999999998776  7777777664

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.91  E-value=0.0031  Score=54.24  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=75.4

Q ss_pred             CcEEecCCCCeEEecccCCCCeEEEE---EE-c--CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172         161 GCSLLGCQASLVILECSIPAFWGILF---SH-P--SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA  234 (276)
Q Consensus       161 dF~L~~~~G~~v~l~~~~~gk~vvL~---f~-p--a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~  234 (276)
                      +.-+.+.+| +.+|++.|+|+--+|+   +| |  ..-||.|..-+..+.-...-++.+++.+++||--+.+.+.+++.+
T Consensus        54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~r  132 (247)
T COG4312          54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRR  132 (247)
T ss_pred             eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHh
Confidence            344445566 5788888999854443   22 2  457999999999998888889999999999999999999999999


Q ss_pred             HHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         235 LVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       235 ~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      .      +..|+..|..+.+   +-+.|+++..
T Consensus       133 m------GW~f~w~Ss~~s~---Fn~Df~vsf~  156 (247)
T COG4312         133 M------GWQFPWVSSTDSD---FNRDFQVSFT  156 (247)
T ss_pred             c------CCcceeEeccCcc---cccccccccc
Confidence            9      8899999886554   5667766433

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=96.87  E-value=0.0019  Score=55.22  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=37.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      ++++|||.|| ++||++|+.-.+.|.+++.+|  ..+.++-|+++.
T Consensus       101 ~~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~--~~vkFvkI~ad~  143 (192)
T cd02988         101 KDTWVVVHLY-KDGIPLCRLLNQHLSELARKF--PDTKFVKIISTQ  143 (192)
T ss_pred             CCCEEEEEEE-CCCCchHHHHHHHHHHHHHHC--CCCEEEEEEhHH
Confidence            3569999999 999999999999999999998  458888888763

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.82  E-value=0.0019  Score=56.12  Aligned_cols=44  Identities=20%  Similarity=0.406  Sum_probs=39.0

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+.+++.+++|| .+.||.|..+.|.|+.+.+++   |+.|+.||+|.
T Consensus       117 ~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG  160 (215)
T PF13728_consen  117 QLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG  160 (215)
T ss_pred             HHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC
Confidence            566889999999 556999999999999998886   89999999984

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.80  E-value=0.003  Score=49.85  Aligned_cols=51  Identities=14%  Similarity=0.061  Sum_probs=36.2

Q ss_pred             CeEEEEEEcCCCCcc--cH--HHHHHHHHHHHHH-HhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         181 FWGILFSHPSDFTPV--CT--TELARVLQLIKEF-EQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       181 k~vvL~f~pa~~cp~--C~--~el~~l~~~~~~~-~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++|++|| +.||++  |+  .-.|.|.+...++ ++.++.++-|++|...   ..++++
T Consensus        28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~   83 (120)
T cd03065          28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKL   83 (120)
T ss_pred             ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHc
Confidence            46666666 999988  99  5566677776665 4567999999998643   334455

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=96.78  E-value=0.0021  Score=56.58  Aligned_cols=69  Identities=17%  Similarity=0.087  Sum_probs=43.4

Q ss_pred             CCCCceEEEe--Ccc-HHHHHhCCCCCCCCCCCCC-CcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIAD--QDR-SLAVQLGMLDPVEKDSKGM-PLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD--~~~-~va~~yG~~~~~~~~~~g~-~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||+++|  .++ .++..|+.+.....+..|- ....+.+||||++|+|++.+..++    +.+++.+.|+.|.
T Consensus       162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~----~~~~le~~I~~lL  234 (236)
T PLN02399        162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT----SPFQIEKDIQKLL  234 (236)
T ss_pred             cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHh
Confidence            5699999965  445 6777776542111000010 012468999999999999987544    4667777777653

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=96.75  E-value=0.0029  Score=53.71  Aligned_cols=55  Identities=11%  Similarity=0.096  Sum_probs=39.4

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD   86 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~   86 (276)
                      ++++||.+. .++++++.||+.        ++    +.+||||++|+|++.  ......++++++++.++
T Consensus       125 ~~~~~~~~~-~~~~i~~~y~v~--------~~----P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l~  179 (189)
T TIGR02661       125 HELGGERYV-VSAEIGMAFQVG--------KI----PYGVLLDQDGKIRAK--GLTNTREHLESLLEADR  179 (189)
T ss_pred             cCCCcceee-chhHHHHhccCC--------cc----ceEEEECCCCeEEEc--cCCCCHHHHHHHHHHHH
Confidence            457777665 578999999873        33    588999999999985  34444456777776664

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=96.72  E-value=0.0028  Score=60.32  Aligned_cols=46  Identities=4%  Similarity=0.023  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~~  225 (276)
                      .++.++|.|| +.||++|....|.++++.+.++..  ++.++.|+.+..
T Consensus       363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n  410 (462)
T TIGR01130       363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN  410 (462)
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence            4788999999 999999999999999999999873  688888887643

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG0908|consensus

Probab=96.64  E-value=0.0022  Score=56.27  Aligned_cols=43  Identities=7%  Similarity=0.090  Sum_probs=38.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+|.|++.|. ++||.+|....|.|+++..+|  .|..++-|.+|.
T Consensus        20 g~k~v~Vdft-a~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd~   62 (288)
T KOG0908|consen   20 GGKLVVVDFT-ASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVDE   62 (288)
T ss_pred             CceEEEEEEE-ecccchHHhhhhHHHHhhhhC--cccEEEEEeHHH
Confidence            5688999999 999999999999999999999  778888887763

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=96.61  E-value=0.0025  Score=56.50  Aligned_cols=44  Identities=16%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+..++.+++||+ +.||.|..+.|.|+.+.+++   |+.|++||+|.
T Consensus       140 ~la~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG  183 (248)
T PRK13703        140 KLAEHYGLMFFYR-GQDPIDGQLAQVINDFRDTY---GLSVIPVSVDG  183 (248)
T ss_pred             HHHhcceEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence            5667899999995 56999999999999988875   79999999984

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=96.58  E-value=0.0065  Score=43.70  Aligned_cols=40  Identities=8%  Similarity=0.052  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES  227 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~  227 (276)
                      .+.|| ++|||+|..-.|.+.++.+++.. .+.+  +.+|+...
T Consensus         2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~~-~~~~--~~v~~~~~   41 (76)
T TIGR00412         2 KIQIY-GTGCANCQMTEKNVKKAVEELGI-DAEF--EKVTDMNE   41 (76)
T ss_pred             EEEEE-CCCCcCHHHHHHHHHHHHHHcCC-CeEE--EEeCCHHH
Confidence            36789 89999999999999999988642 2444  55555443

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=96.54  E-value=0.0031  Score=56.13  Aligned_cols=45  Identities=20%  Similarity=0.382  Sum_probs=39.0

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+..++.+++||+ +.||.|....|.|+.+.++|   |+.|++||+|..
T Consensus       147 ~la~~~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~  191 (256)
T TIGR02739       147 QLSQSYGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGT  191 (256)
T ss_pred             HHHhceeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC
Confidence            5667899999995 66999999999999988875   799999999853

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=96.53  E-value=0.0069  Score=45.26  Aligned_cols=41  Identities=27%  Similarity=0.534  Sum_probs=34.9

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEe
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFL   69 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~   69 (276)
                      .+++||++.|.+.++++.||+.        +    .+.+||+||+|+|++.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~--------~----~P~~~l~d~~g~v~~~~~  115 (116)
T cd02966          75 YGITFPVLLDPDGELAKAYGVR--------G----LPTTFLIDRDGRIRARHV  115 (116)
T ss_pred             cCCCcceEEcCcchHHHhcCcC--------c----cceEEEECCCCcEEEEec
Confidence            4589999999999999999985        2    358999999999987753

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=96.51  E-value=0.0084  Score=41.50  Aligned_cols=39  Identities=10%  Similarity=0.069  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      |..|+ +.|||+|..-.+.|+++.++.  .++.+.-+++|..
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~~   41 (67)
T cd02973           3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAAEF   41 (67)
T ss_pred             EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcccC
Confidence            66777 999999999988888876543  4688888887653

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PTZ00102 disulphide isomerase; Provisional

Probab=96.47  E-value=0.0036  Score=60.24  Aligned_cols=44  Identities=5%  Similarity=0.016  Sum_probs=36.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D  223 (276)
                      +++.++|.|| +.||++|++..|.+.++.+.++..+  +.+.-|..+
T Consensus        48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~   93 (477)
T PTZ00102         48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT   93 (477)
T ss_pred             cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC
Confidence            4678999999 9999999999999999999887655  555555544

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=96.45  E-value=0.0058  Score=47.32  Aligned_cols=55  Identities=18%  Similarity=0.236  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172         203 VLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       203 l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      |.+..+++++.|+.+|+|+.++++..++|++..      +.++++++|++.   ++.+++|+..
T Consensus         2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~------~~p~~ly~D~~~---~lY~~lg~~~   56 (115)
T PF13911_consen    2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT------GFPFPLYVDPER---KLYKALGLKR   56 (115)
T ss_pred             hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc------CCCCcEEEeCcH---HHHHHhCCcc
Confidence            567788999999999999999997799999777      789999999754   4677777754

>PTZ00056 glutathione peroxidase; Provisional

Probab=96.41  E-value=0.017  Score=49.54  Aligned_cols=64  Identities=13%  Similarity=0.069  Sum_probs=38.9

Q ss_pred             CCCCceEEEeC------ccHHHHH--------hCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHH
Q psy1172          17 GKLPYPIIADQ------DRSLAVQ--------LGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEIL   82 (276)
Q Consensus        17 ~~l~fpllsD~------~~~va~~--------yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eil   82 (276)
                      ++++||+++|.      .+.+.+.        |+....    ..+++ ..+++||||++|+|+..+..+.    +.+++.
T Consensus       101 ~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~----~~~i~-~~~~tflID~~G~iv~~~~g~~----~~~~l~  171 (199)
T PTZ00056        101 NKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGT----LKAIG-WNFGKFLVNKSGNVVAYFSPRT----EPLELE  171 (199)
T ss_pred             cCCCceeeeeeeccCCccCHHHHHHHHhCccccccccc----CCccC-CCCEEEEECCCCcEEEEeCCCC----CHHHHH
Confidence            56999999972      3333332        332110    01232 2358999999999998776433    456677


Q ss_pred             HHHHhhc
Q psy1172          83 RVLDSLQ   89 (276)
Q Consensus        83 r~l~~lq   89 (276)
                      +.|+.|-
T Consensus       172 ~~I~~ll  178 (199)
T PTZ00056        172 KKIAELL  178 (199)
T ss_pred             HHHHHHH
Confidence            7776654

>PTZ00062 glutaredoxin; Provisional

Probab=96.38  E-value=0.006  Score=52.57  Aligned_cols=40  Identities=13%  Similarity=0.138  Sum_probs=33.9

Q ss_pred             CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      +.+||+|| +.|||+|+.-.+-|.++.++|  ..+.++-|+.|
T Consensus        18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~--~~~~F~~V~~d   57 (204)
T PTZ00062         18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDF--PSLEFYVVNLA   57 (204)
T ss_pred             CcEEEEEe-CCCCcchHHHHHHHHHHHHHC--CCcEEEEEccc
Confidence            56788888 999999999999999999988  45777777665

>KOG4498|consensus

Probab=96.32  E-value=0.01  Score=49.95  Aligned_cols=103  Identities=11%  Similarity=0.045  Sum_probs=75.5

Q ss_pred             hcccCCCCcccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172         142 LQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS  221 (276)
Q Consensus       142 ~~~a~~~~~~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS  221 (276)
                      +.++.....+++.+|+..-++   +..|+.+.+.+.++.+..++.|.+---|--|+++..+|.++-.-++..|+.+|+|.
T Consensus        15 ~~s~i~pa~sgp~~~q~~a~l---~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg   91 (197)
T KOG4498|consen   15 IASTIVPARSGPMIGQLPANL---DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG   91 (197)
T ss_pred             HHhhcccccCCccccccchhh---hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence            344555566677777765553   55788888887788889999999999999999999999999777889999999998


Q ss_pred             CCChHHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172         222 CDSVESHHDWIKALVRDCILGLLINLSVDDFK  253 (276)
Q Consensus       222 ~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~  253 (276)
                      ..+....+.+.++-      .+.=.+..|++.
T Consensus        92 ~g~~~~~~~f~~q~------~f~gevylD~~~  117 (197)
T KOG4498|consen   92 PGSHVQFEDFWDQT------YFSGEVYLDPHR  117 (197)
T ss_pred             ccceeecchhhccc------CcceeEEEcCcc
Confidence            76655444444333      223345556544

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.21  E-value=0.057  Score=46.64  Aligned_cols=40  Identities=8%  Similarity=-0.017  Sum_probs=27.7

Q ss_pred             eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+|+.|| +.|||+|..-.+.++++..+.  ..+.+.-|..+.
T Consensus       135 v~I~~F~-a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~  174 (215)
T TIGR02187       135 VRIEVFV-TPTCPYCPYAVLMAHKFALAN--DKILGEMIEANE  174 (215)
T ss_pred             cEEEEEE-CCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCC
Confidence            3555588 999999997777776665542  346666666654

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=96.19  E-value=0.023  Score=48.06  Aligned_cols=58  Identities=7%  Similarity=0.098  Sum_probs=42.9

Q ss_pred             CCCceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEE-EEecCCCCCCCHHHHHHHHHhhc
Q psy1172          18 KLPYPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRL-SFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        18 ~l~fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~-~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+.||++.| ..+.+.+.||.+..      +    ..++||||++|+|++ ++...++    .+++.+.|+.+.
T Consensus       112 ~~~fPv~~dd~~~~~~~~~g~~~~------~----iPttfLId~~G~i~~~~~~G~~~----~~~L~~~I~~ll  171 (181)
T PRK13728        112 DTAFPEALPAPPDVMQTFFPNIPV------A----TPTTFLVNVNTLEALPLLQGATD----AAGFMARMDTVL  171 (181)
T ss_pred             CCCCceEecCchhHHHHHhCCCCC------C----CCeEEEEeCCCcEEEEEEECCCC----HHHHHHHHHHHH
Confidence            589999996 67788889996311      3    369999999999964 6665554    667777776654

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=96.15  E-value=0.013  Score=46.89  Aligned_cols=68  Identities=10%  Similarity=-0.016  Sum_probs=39.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHH--HHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcch
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQ--LIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKE  254 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~--~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~  254 (276)
                      .+|+++|+|+ ++||++|++--..+-+  -..++-++++.+|-+..|..+....      . .+..+|.-+..|+++.
T Consensus        22 ~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~------~-~g~~vPtivFld~~g~   91 (130)
T cd02960          22 SNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS------P-DGQYVPRIMFVDPSLT   91 (130)
T ss_pred             CCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC------c-cCcccCeEEEECCCCC
Confidence            5899999999 9999999987665422  2233333445444444442210000      0 1225676677787765

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=95.88  E-value=0.028  Score=55.05  Aligned_cols=54  Identities=15%  Similarity=0.162  Sum_probs=44.1

Q ss_pred             CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          20 PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        20 ~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .||++.|.++++++.||+.        ++    +++||||++|+|+......++    .+++...|+...
T Consensus       120 ~~pV~~D~~~~lak~fgV~--------gi----PTt~IIDkdGkIV~~~~G~~~----~eeL~a~Ie~~~  173 (521)
T PRK14018        120 KLPVLTDNGGTLAQSLNIS--------VY----PSWAIIGKDGDVQRIVKGSIS----EAQALALIRNPN  173 (521)
T ss_pred             ccceeccccHHHHHHcCCC--------Cc----CeEEEEcCCCeEEEEEeCCCC----HHHHHHHHHHhh
Confidence            5799999999999999984        44    599999999999999986654    677777776433

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=95.63  E-value=0.055  Score=37.30  Aligned_cols=44  Identities=9%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKAL  235 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~  235 (276)
                      +..|+ ++|||+|....+.|.+       .++.+.-++++. ++..+++.+.+
T Consensus         2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~   46 (74)
T TIGR02196         2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVL   46 (74)
T ss_pred             EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHh
Confidence            44566 9999999987766653       678888888864 33444555555

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PHA02125 thioredoxin-like protein

Probab=95.62  E-value=0.029  Score=40.06  Aligned_cols=41  Identities=7%  Similarity=0.139  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      |+.|| ++||++|+.-.|.|.++       .+.++-|+.|..   .+..+++
T Consensus         2 iv~f~-a~wC~~Ck~~~~~l~~~-------~~~~~~vd~~~~---~~l~~~~   42 (75)
T PHA02125          2 IYLFG-AEWCANCKMVKPMLANV-------EYTYVDVDTDEG---VELTAKH   42 (75)
T ss_pred             EEEEE-CCCCHhHHHHHHHHHHH-------hheEEeeeCCCC---HHHHHHc
Confidence            67888 99999999988887643       134566665542   2344555

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=95.62  E-value=0.021  Score=49.37  Aligned_cols=44  Identities=11%  Similarity=0.019  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEEc--CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         178 IPAFWGILFSHP--SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       178 ~~gk~vvL~f~p--a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .++...++.|+-  +.|||+|....|.|.++.+++.  ++++..+++|
T Consensus        17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd   62 (215)
T TIGR02187        17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD   62 (215)
T ss_pred             cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence            455556767773  3999999999999999998883  4555566665

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=95.43  E-value=0.039  Score=43.44  Aligned_cols=46  Identities=13%  Similarity=0.162  Sum_probs=34.1

Q ss_pred             CCCeEEEEEEcC------CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPS------DFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa------~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .|++++|.|+-+      +|||.|+...|.+++.... ...+..+|-|.+.+.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r   69 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDR   69 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCH
Confidence            568899999832      5999999999999998887 345788888888765

; PDB: 1V9W_A 1WOU_A.

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=95.43  E-value=0.064  Score=41.39  Aligned_cols=53  Identities=23%  Similarity=0.439  Sum_probs=39.9

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCC-------------------------CC-CCCCcccceEEEECCCCcEEEEEe
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEK-------------------------DS-KGMPLTCRAVFIIDPAKKLRLSFL   69 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~-------------------------~~-~g~~~~~R~tfiIdp~g~I~~~~~   69 (276)
                      ...+|||.+|+++++-+++||-.....                         +. .|-....=++||+|++|+|++.+.
T Consensus        34 ~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr  112 (115)
T PF13911_consen   34 TGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR  112 (115)
T ss_pred             cCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence            569999999999999999998752110                         11 233334568999999999999886

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=95.32  E-value=0.024  Score=46.23  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=27.2

Q ss_pred             eEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEE
Q psy1172          22 PIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSF   68 (276)
Q Consensus        22 pllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~   68 (276)
                      |+..+.+++++++||+.        |+    +++||||++|+|+...
T Consensus        95 p~~~~~~~~l~~~y~v~--------~i----Pt~vlId~~G~Vv~~~  129 (146)
T cd03008          95 PFEDEFRRELEAQFSVE--------EL----PTVVVLKPDGDVLAAN  129 (146)
T ss_pred             cccchHHHHHHHHcCCC--------CC----CEEEEECCCCcEEeeC
Confidence            44555567999999974        44    5999999999998753

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=95.21  E-value=0.04  Score=41.97  Aligned_cols=37  Identities=14%  Similarity=0.222  Sum_probs=28.2

Q ss_pred             CCCC-ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy1172          17 GKLP-YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLS   67 (276)
Q Consensus        17 ~~l~-fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~   67 (276)
                      .++. ||++.|  ..++++||+.        +    .+++||||++|+|++.
T Consensus        74 ~~~~~~p~~~~--~~~~~~~~~~--------~----~P~~~vid~~G~v~~~  111 (114)
T cd02967          74 HGLEAFPYVLS--AELGMAYQVS--------K----LPYAVLLDEAGVIAAK  111 (114)
T ss_pred             hCCCCCcEEec--HHHHhhcCCC--------C----cCeEEEECCCCeEEec
Confidence            4464 888874  5688888873        2    4799999999999875

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=95.14  E-value=0.1  Score=40.13  Aligned_cols=67  Identities=10%  Similarity=0.024  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHH-H--HHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELAR-V--LQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDD  251 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~-l--~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~  251 (276)
                      ++|+++|+|+ ++||++|..-... |  .+..+.+ +..+..+.+.+++++ ..++...+...   ++|.-++.|+
T Consensus        16 ~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l-~~~~v~~~~d~~~~e-~~~~~~~~~~~---~~P~~~~i~~   85 (114)
T cd02958          16 EKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFI-RENFIFWQCDIDSSE-GQRFLQSYKVD---KYPHIAIIDP   85 (114)
T ss_pred             hCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHH-HhCEEEEEecCCCcc-HHHHHHHhCcc---CCCeEEEEeC
Confidence            5799999999 9999999875432 2  1233333 335667777776654 34666666433   5566666665

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=95.14  E-value=0.064  Score=39.83  Aligned_cols=46  Identities=4%  Similarity=-0.169  Sum_probs=34.8

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++++..-+..|+ +.||++|..-.+.++++.+++  .++.+..+..|..
T Consensus         9 ~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~~~   54 (89)
T cd03026           9 RLNGPINFETYV-SLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGALF   54 (89)
T ss_pred             hcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhHhC
Confidence            566555666666 999999999888888888765  3588888877643

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=95.00  E-value=0.1  Score=36.55  Aligned_cols=41  Identities=10%  Similarity=0.093  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI  232 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~  232 (276)
                      +..|| ++|||+|++..+.|.+       .|+..-.|+++......++.
T Consensus         2 v~ly~-~~~C~~C~~~~~~L~~-------~~~~~~~idi~~~~~~~~~~   42 (77)
T TIGR02200         2 ITVYG-TTWCGYCAQLMRTLDK-------LGAAYEWVDIEEDEGAADRV   42 (77)
T ss_pred             EEEEE-CCCChhHHHHHHHHHH-------cCCceEEEeCcCCHhHHHHH
Confidence            56778 9999999998776654       45555566666443333443

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.98  E-value=0.062  Score=57.17  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+++||++.|.++++++.||+.        |+    +++||||++|+|+..+..+.    +.+++.+.|+++
T Consensus       480 ~~i~~pvv~D~~~~~~~~~~V~--------~i----Pt~ilid~~G~iv~~~~G~~----~~~~l~~~l~~~  535 (1057)
T PLN02919        480 YNISHPVVNDGDMYLWRELGVS--------SW----PTFAVVSPNGKLIAQLSGEG----HRKDLDDLVEAA  535 (1057)
T ss_pred             hCCCccEEECCchHHHHhcCCC--------cc----ceEEEECCCCeEEEEEeccc----CHHHHHHHHHHH
Confidence            5699999999999999999974        44    59999999999998876433    345555555543

>KOG0190|consensus

Probab=94.79  E-value=0.034  Score=53.74  Aligned_cols=35  Identities=6%  Similarity=0.004  Sum_probs=32.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT  214 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g  214 (276)
                      .+|-|+|-|| +.||++|.+-.|.++++.+.|++..
T Consensus       383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~~  417 (493)
T KOG0190|consen  383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDDE  417 (493)
T ss_pred             cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCCC
Confidence            4688999999 9999999999999999999998853

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.03  Score=45.55  Aligned_cols=49  Identities=29%  Similarity=0.425  Sum_probs=36.8

Q ss_pred             CCC-ceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEe
Q psy1172          18 KLP-YPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFL   69 (276)
Q Consensus        18 ~l~-fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~   69 (276)
                      +|. --.+|| .++...++||++..+- .-.|+  ..|++||+|.+|+|.++..
T Consensus        98 Gi~nv~~lSd~r~~~Fge~yGv~I~eg-pL~gL--lARaV~V~De~g~V~y~el  148 (158)
T COG2077          98 GIENVITLSDFRDRAFGENYGVLINEG-PLAGL--LARAVFVLDENGKVTYSEL  148 (158)
T ss_pred             CcccceEhhhhhhhhhhHhhCEEeccc-cccCe--eeeEEEEEcCCCcEEEEEc
Confidence            344 567899 4667889999986431 11244  5799999999999999987

>smart00594 UAS UAS domain

Probab=94.51  E-value=0.19  Score=39.37  Aligned_cols=69  Identities=16%  Similarity=0.043  Sum_probs=45.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHH---HHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVL---QLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFK  253 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~---~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~  253 (276)
                      .+|+++|+|+ +.||+.|..-....-   +..+.+ ++++-++.+++++.+. .++.+.+.-.   ++|+-.+.++.+
T Consensus        26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~---~~P~~~~l~~~~   97 (122)
T smart00594       26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLD---SFPYVAIVDPRT   97 (122)
T ss_pred             hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcC---CCCEEEEEecCC
Confidence            5789999999 999999998765422   122333 4467777777777654 4667777333   556666656543

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=94.11  E-value=0.17  Score=39.65  Aligned_cols=54  Identities=7%  Similarity=0.044  Sum_probs=35.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCCh--HHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDSV--ESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~~--~~~~~~~~~~  235 (276)
                      +.+.++|-|| ++| |.|.+ +|.+.++.+++....  +.|--|..++.  ...+..++++
T Consensus        17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y   74 (116)
T cd03007          17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERY   74 (116)
T ss_pred             cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHh
Confidence            3467899999 977 77776 588888888885543  44445555431  1235666777

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=94.11  E-value=0.033  Score=43.83  Aligned_cols=38  Identities=13%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEE
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSF   68 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~   68 (276)
                      .++|+. +|.+..+++.||+.        ++    +++||||++|+|+...
T Consensus        79 ~~~~~~-~~~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~~~  116 (131)
T cd03009          79 AVPFSD-RERRSRLNRTFKIE--------GI----PTLIILDADGEVVTTD  116 (131)
T ss_pred             EcccCC-HHHHHHHHHHcCCC--------CC----CEEEEECCCCCEEccc
Confidence            355654 56677899999984        33    6999999999987543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG0190|consensus

Probab=94.09  E-value=0.063  Score=51.97  Aligned_cols=54  Identities=11%  Similarity=0.091  Sum_probs=42.1

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ...+++-|| |.||.+|.+-+|++.+..+.++..|-.|.-.-+|..+. ...+.++
T Consensus        42 ~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y   95 (493)
T KOG0190|consen   42 HEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKY   95 (493)
T ss_pred             CceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhh
Confidence            457789999 99999999999999999999998854444445565544 5666666

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=93.84  E-value=0.14  Score=42.12  Aligned_cols=58  Identities=14%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+.|.+ ++.|.+|.+.+++++-...           -+++|+|++|+|+++....++    -+|+-+++.-++
T Consensus       100 k~~p~s~~vlD~~G~~~~aW~L~~~~-----------SaiiVlDK~G~V~F~k~G~Ls----~~Ev~qVi~Ll~  158 (160)
T PF09695_consen  100 KEFPWSQFVLDSNGVVRKAWQLQEES-----------SAIIVLDKQGKVQFVKEGALS----PAEVQQVIALLK  158 (160)
T ss_pred             hhCCCcEEEEcCCCceeccccCCCCC-----------ceEEEEcCCccEEEEECCCCC----HHHHHHHHHHHh
Confidence            456666 7899999999999985432           278899999999999987776    666666665443

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=93.81  E-value=0.088  Score=41.99  Aligned_cols=70  Identities=11%  Similarity=0.133  Sum_probs=38.2

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCc
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~  252 (276)
                      .+..+..+|.|- .+|||.|..++|.|.++.+.-  .+++|=-++.|..   ....+.+...++..+|.-+..|.+
T Consensus        38 ~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~--p~i~~~~i~rd~~---~el~~~~lt~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   38 SIQKPYNILVIT-ETWCGDCARNVPVLAKIAEAN--PNIEVRIILRDEN---KELMDQYLTNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             T--S-EEEEEE---TT-HHHHHHHHHHHHHHHH---TTEEEEEE-HHHH---HHHTTTTTT-SS--SSEEEEE-TT
T ss_pred             hcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhC--CCCeEEEEEecCC---hhHHHHHHhCCCeecCEEEEEcCC
Confidence            345566777777 999999999999999999874  4677766666532   223333322223345555555544

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=93.48  E-value=0.32  Score=42.58  Aligned_cols=64  Identities=9%  Similarity=0.061  Sum_probs=49.2

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCc---EEEEEeCCC
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTC---KVIALSCDS  224 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv---~Vv~VS~D~  224 (276)
                      +-+.+|.+++-+.   . -.. ...|+++||-+-.+ .|..|..++.+|..+..+++..|.   .++.||.-.
T Consensus         6 ~C~~~p~W~i~~~---~-pm~-~~~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~   72 (238)
T PF04592_consen    6 ICKPPPPWKIGGQ---D-PML-NSLGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG   72 (238)
T ss_pred             cCCCCCCceECCc---h-Hhh-hcCCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence            4577899987433   2 223 57899999999855 699999999999999999998874   667776543

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>TIGR02180 GRX_euk Glutaredoxin

Probab=93.16  E-value=0.21  Score=35.70  Aligned_cols=36  Identities=14%  Similarity=0.287  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      |+.|+ ++|||+|.+..+.|.++.  + ...+.++-|+.+
T Consensus         1 V~~f~-~~~Cp~C~~~~~~L~~~~--i-~~~~~~~~v~~~   36 (84)
T TIGR02180         1 VVVFS-KSYCPYCKKAKEILAKLN--V-KPAYEVVELDQL   36 (84)
T ss_pred             CEEEE-CCCChhHHHHHHHHHHcC--C-CCCCEEEEeeCC
Confidence            35667 999999999998888765  1 123677777765

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG0191|consensus

Probab=92.50  E-value=0.81  Score=43.03  Aligned_cols=43  Identities=7%  Similarity=-0.012  Sum_probs=35.8

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCD  223 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D  223 (276)
                      ....++.|| +.||++|+.-+|.+.++...++. .++.+..+..+
T Consensus       162 ~~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~  205 (383)
T KOG0191|consen  162 DADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT  205 (383)
T ss_pred             CcceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence            345678888 99999999999999999999974 56777777766

>KOG3425|consensus

Probab=92.44  E-value=0.36  Score=37.85  Aligned_cols=47  Identities=9%  Similarity=0.098  Sum_probs=36.6

Q ss_pred             CCCeEEEEEEcC-------CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPS-------DFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa-------~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      +|+.+++.|.-+       +|||.|.+-.|-+.+..+. ...++.+|-|-+.+..
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~-ap~~~~~v~v~VG~rp   77 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH-APEDVHFVHVYVGNRP   77 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh-CCCceEEEEEEecCCC
Confidence            567777777743       5999999999999988884 3567888888887653

>KOG0191|consensus

Probab=92.19  E-value=0.26  Score=46.36  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=39.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++.++.|| +.||++|.+.+|.+.++...+++   .+...++|.. .++...+++
T Consensus        46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~-~~~~~~~~y   97 (383)
T KOG0191|consen   46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCD-EHKDLCEKY   97 (383)
T ss_pred             cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC---ceEEEEeCch-hhHHHHHhc
Confidence            4678999999 99999999999999999888855   3444455543 345566666

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=91.89  E-value=0.27  Score=48.33  Aligned_cols=72  Identities=11%  Similarity=0.032  Sum_probs=48.9

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHH-HHHHHHHHHHhCCcEEEEEeC--CChHHHHHHHHHHHhcccCCeeEEEeeCCcch
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELA-RVLQLIKEFEQRTCKVIALSC--DSVESHHDWIKALVRDCILGLLINLSVDDFKE  254 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~-~l~~~~~~~~~~gv~Vv~VS~--D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~  254 (276)
                      -++|||+|+|| |+||=.|+..-+ -|.+....++-+|+..+=+.+  ++++ +.+..+++.   -.+.+..+..+.++.
T Consensus       472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~-~~~lLk~~~---~~G~P~~~ff~~~g~  546 (569)
T COG4232         472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPA-ITALLKRLG---VFGVPTYLFFGPQGS  546 (569)
T ss_pred             CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHH-HHHHHHHcC---CCCCCEEEEECCCCC
Confidence            35579999999 999999996655 444666777778887776654  4554 455666662   236676666665443

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=91.84  E-value=0.06  Score=39.65  Aligned_cols=34  Identities=24%  Similarity=0.596  Sum_probs=24.2

Q ss_pred             CCceEEE---eCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcE
Q psy1172          19 LPYPIIA---DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKL   64 (276)
Q Consensus        19 l~fplls---D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I   64 (276)
                      .+++.+.   |...++.+.||+.        ++    ++++|||++|+|
T Consensus        59 ~~~~~~~~~~~~~~~l~~~~~i~--------~i----P~~~lld~~G~I   95 (95)
T PF13905_consen   59 FPWYNVPFDDDNNSELLKKYGIN--------GI----PTLVLLDPDGKI   95 (95)
T ss_dssp             TSSEEEETTTHHHHHHHHHTT-T--------SS----SEEEEEETTSBE
T ss_pred             CCceEEeeCcchHHHHHHHCCCC--------cC----CEEEEECCCCCC
Confidence            3444444   4467899999985        33    599999999987

...

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=90.95  E-value=1.7  Score=34.99  Aligned_cols=56  Identities=11%  Similarity=0.091  Sum_probs=39.3

Q ss_pred             CCCceEEE-eCc--cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          18 KLPYPIIA-DQD--RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        18 ~l~fplls-D~~--~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++.|-.+. |.+  ..+++.||+.        |+    .+++|+|++|+++.......    ..+++.+.|+++.
T Consensus        52 ~~~~v~v~vd~~~~~~~~~~~~V~--------~i----Pt~v~~~~~G~~v~~~~G~~----~~~~l~~~l~~l~  110 (142)
T cd02950          52 QVNFVMLNVDNPKWLPEIDRYRVD--------GI----PHFVFLDREGNEEGQSIGLQ----PKQVLAQNLDALV  110 (142)
T ss_pred             CeeEEEEEcCCcccHHHHHHcCCC--------CC----CEEEEECCCCCEEEEEeCCC----CHHHHHHHHHHHH
Confidence            46665443 332  3788999874        44    59999999999998777432    3677888888765

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=90.92  E-value=0.63  Score=33.73  Aligned_cols=37  Identities=11%  Similarity=0.061  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      |..|. ..|||.|.+-...|+++..++  .|+.+.-|+++
T Consensus         3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~   39 (85)
T PRK11200          3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH   39 (85)
T ss_pred             EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence            44555 899999999999998887664  56766666665

>KOG0466|consensus

Probab=90.91  E-value=0.058  Score=49.10  Aligned_cols=100  Identities=46%  Similarity=0.728  Sum_probs=68.7

Q ss_pred             CCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCCCCC
Q psy1172          48 MPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKP  127 (276)
Q Consensus        48 ~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~~~~  127 (276)
                      +|.|+|- |..-|.-+|...+. -..+|-.++++.--+..-.       -+--=.+-|+...|.|.+...+...++.|.|
T Consensus       240 IPvPvRd-f~s~prlIVIRSFD-VNkPG~ev~~lkGgvaggs-------il~Gvlkvg~~IEiRPGiv~kd~~g~~~C~P  310 (466)
T KOG0466|consen  240 IPVPVRD-FTSPPRLIVIRSFD-VNKPGSEVDDLKGGVAGGS-------ILKGVLKVGQEIEIRPGIVTKDENGNIKCRP  310 (466)
T ss_pred             CCCCccc-cCCCCcEEEEEeec-cCCCCchhhcccCccccch-------hhhhhhhcCcEEEecCceeeecCCCcEEEee
Confidence            3445553 44445555544443 2346666666543322110       1111235689999999999999999999999


Q ss_pred             ceeeeeechhhhchhcccCCCCcccccccCC
Q psy1172         128 IFSRIVSLFAEQNELQFAVPGGLIDRFAAAL  158 (276)
Q Consensus       128 w~~~~~~~~~~~~~~~~a~~~~~~~~~~G~~  158 (276)
                      .|.|+.+++++....++|.|+++++  +|.+
T Consensus       311 i~SrI~sL~AE~n~L~~AvPGGLIG--VGT~  339 (466)
T KOG0466|consen  311 IFSRIVSLFAEQNDLQFAVPGGLIG--VGTK  339 (466)
T ss_pred             HHHHHHHHHhhhccceeecCCceee--eccc
Confidence            9999999999999999999999986  4443

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=90.68  E-value=0.89  Score=30.98  Aligned_cols=33  Identities=12%  Similarity=0.131  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +..|. ..|||.|.+-...|.+       .++.+..+++|.
T Consensus         2 v~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~   34 (73)
T cd02976           2 VTVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE   34 (73)
T ss_pred             EEEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence            34455 8999999986555543       567777777774

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG0912|consensus

Probab=90.46  E-value=0.25  Score=44.88  Aligned_cols=44  Identities=14%  Similarity=0.008  Sum_probs=35.4

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~  224 (276)
                      ...|+|+|| |+||+..+.-+|.|.+.++.|++.  .-+||-=++|.
T Consensus        13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc   58 (375)
T KOG0912|consen   13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC   58 (375)
T ss_pred             ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc
Confidence            457999999 999999999999999999999764  23455445664

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=89.74  E-value=1.1  Score=36.81  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             cceEEEECCCCcE-EEEEecCCCCCCCHHHHHHHHHh
Q psy1172          52 CRAVFIIDPAKKL-RLSFLYPATTGRNFDEILRVLDS   87 (276)
Q Consensus        52 ~R~tfiIdp~g~I-~~~~~~~~~~~r~~~eilr~l~~   87 (276)
                      .+++||||++|.+ +.+...+++    .+++.+.|+.
T Consensus       119 iPTt~LID~~G~~i~~~~~G~~s----~~~l~~~I~~  151 (153)
T TIGR02738       119 TPATFLVNVNTRKAYPVLQGAVD----EAELANRMDE  151 (153)
T ss_pred             CCeEEEEeCCCCEEEEEeecccC----HHHHHHHHHH
Confidence            4699999999875 445554443    5666666654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=89.11  E-value=0.87  Score=36.04  Aligned_cols=38  Identities=16%  Similarity=0.054  Sum_probs=28.9

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEE
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIAL  220 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~V  220 (276)
                      ++.+|+.|+ ..+||+|..-.+.+.++..++.+  +.|+-.
T Consensus         5 a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~   42 (154)
T cd03023           5 GDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVFK   42 (154)
T ss_pred             CCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence            567788888 99999999999999888776532  444433

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=88.21  E-value=1.9  Score=29.07  Aligned_cols=43  Identities=7%  Similarity=0.036  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA  234 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~  234 (276)
                      |+.|. ..|||.|+.-...|.+       .++.+.-++++.....+++..+
T Consensus         2 v~ly~-~~~Cp~C~~~~~~L~~-------~~i~~~~~di~~~~~~~~~l~~   44 (72)
T cd02066           2 VVVFS-KSTCPYCKRAKRLLES-------LGIEFEEIDILEDGELREELKE   44 (72)
T ss_pred             EEEEE-CCCCHHHHHHHHHHHH-------cCCcEEEEECCCCHHHHHHHHH
Confidence            34455 8999999987777664       4566667777654434444433

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=87.46  E-value=2.4  Score=37.32  Aligned_cols=56  Identities=25%  Similarity=0.340  Sum_probs=44.3

Q ss_pred             CCCceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ...+|++.| .++...++||.+            |.| +|||. ||+|.+.=- |-..+-+.+|+-..|++.
T Consensus       180 ~~~~pi~vD~mdN~~~~~YgA~------------PeR-lyIi~-~gkv~Y~Gg-~GP~~y~~~e~r~~L~~~  236 (237)
T PF00837_consen  180 FPQCPIVVDTMDNNFNKAYGAL------------PER-LYIIQ-DGKVVYKGG-PGPFGYSPEELREWLEKY  236 (237)
T ss_pred             CCCCCEEEEccCCHHHHHhCCC------------cce-EEEEE-CCEEEEeCC-CCCCcCCHHHHHHHHHhc
Confidence            467999999 588999999986            345 56664 999987765 666777999999999865

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=85.69  E-value=3.1  Score=33.30  Aligned_cols=48  Identities=13%  Similarity=0.082  Sum_probs=34.7

Q ss_pred             EecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeC
Q psy1172         173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSC  222 (276)
Q Consensus       173 ~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~  222 (276)
                      .+. .-.++++|..|+ .-.||+|.+-.+.+.++.+++-+. .+.++-..+
T Consensus         6 ~~G-~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen    6 TIG-NPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             EES--TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred             eec-CCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence            344 334677777787 999999999999999999998333 467776655

...

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=85.69  E-value=2.3  Score=28.39  Aligned_cols=33  Identities=9%  Similarity=0.132  Sum_probs=24.2

Q ss_pred             EEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         185 LFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       185 L~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +.|. ..+||.|.+-...|       +.+|+..-.+.++..
T Consensus         2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~   34 (60)
T PF00462_consen    2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDED   34 (60)
T ss_dssp             EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGS
T ss_pred             EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccc
Confidence            4455 89999999876666       457787777777654

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=84.66  E-value=3.1  Score=29.69  Aligned_cols=45  Identities=7%  Similarity=0.062  Sum_probs=29.4

Q ss_pred             eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172         182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA  234 (276)
Q Consensus       182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~  234 (276)
                      .-|..|. ..|||.|.+-...|.       +.|+....++++.......+.+.
T Consensus         8 ~~V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~   52 (79)
T TIGR02190         8 ESVVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAV   52 (79)
T ss_pred             CCEEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHH
Confidence            3455555 899999998766664       46777777777654444445443

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=84.62  E-value=3.7  Score=33.65  Aligned_cols=51  Identities=14%  Similarity=0.262  Sum_probs=35.1

Q ss_pred             EEEeCccHHHH-HhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172          23 IIADQDRSLAV-QLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD   86 (276)
Q Consensus        23 llsD~~~~va~-~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~   86 (276)
                      ++-|..+ +++ ++++-.+.           -++.|.|++|+|.++.-..++ ...+.+++..|.
T Consensus       129 ~vlD~~g-vak~AWqL~e~~-----------SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~  180 (184)
T COG3054         129 FVLDSNG-VAKNAWQLKEES-----------SAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQ  180 (184)
T ss_pred             eEEccch-hhhhhhcccccc-----------ceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHH
Confidence            7888887 666 88874332           389999999999999886555 223444444443

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=83.69  E-value=2.9  Score=30.46  Aligned_cols=49  Identities=14%  Similarity=0.046  Sum_probs=28.2

Q ss_pred             EEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHHHHHH
Q psy1172         185 LFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDWIKAL  235 (276)
Q Consensus       185 L~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~~~~~  235 (276)
                      +..|-.+|||+|.+-...|.++..++  .++.+.-++++ +....+++.+..
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~~~~~~~~~l~~~~   51 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIHAEGISKADLEKTV   51 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECCCCHHHHHHHHHHh
Confidence            34455899999998877776654332  24555555554 222233444444

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=83.43  E-value=3.6  Score=30.24  Aligned_cols=40  Identities=10%  Similarity=-0.118  Sum_probs=25.2

Q ss_pred             cCCCCeEEEEEEc---CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         177 SIPAFWGILFSHP---SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       177 ~~~gk~vvL~f~p---a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      ..+.++|+|+.-.   ..|||+|.+-...|.+       .|+..-.+.++
T Consensus         4 ~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~   46 (90)
T cd03028           4 LIKENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDIL   46 (90)
T ss_pred             hhccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcC
Confidence            4566787777551   1599999976666554       45555555554

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=82.71  E-value=4.6  Score=30.25  Aligned_cols=40  Identities=5%  Similarity=-0.122  Sum_probs=26.0

Q ss_pred             CCCCeEEEEEEc---CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         178 IPAFWGILFSHP---SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       178 ~~gk~vvL~f~p---a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      ...++|+|+.-.   ..|||+|.+--..|.+       +|+....+.++.
T Consensus         9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~   51 (97)
T TIGR00365         9 IKENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLE   51 (97)
T ss_pred             hccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCC
Confidence            455677777652   2799999976665553       566666666643

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=82.31  E-value=4  Score=30.61  Aligned_cols=41  Identities=22%  Similarity=0.348  Sum_probs=27.3

Q ss_pred             cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172          29 RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL   85 (276)
Q Consensus        29 ~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l   85 (276)
                      .++++.||+-        |.    ++.+++|++|++......-+    +.+|++..|
T Consensus        72 ~~l~~~~~v~--------gt----Pt~~~~d~~G~~v~~~~G~~----~~~~l~~~L  112 (112)
T PF13098_consen   72 KELAQRYGVN--------GT----PTIVFLDKDGKIVYRIPGYL----SPEELLKML  112 (112)
T ss_dssp             HHHHHHTT----------SS----SEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred             HHHHHHcCCC--------cc----CEEEEEcCCCCEEEEecCCC----CHHHHHhhC
Confidence            3688888874        55    49999999999887765333    356766554

...

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=81.22  E-value=3.4  Score=35.55  Aligned_cols=59  Identities=19%  Similarity=0.248  Sum_probs=38.6

Q ss_pred             eCccHHHHHhCCCCCC--CCC--CCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          26 DQDRSLAVQLGMLDPV--EKD--SKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        26 D~~~~va~~yG~~~~~--~~~--~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      +...+++++|++....  ..+  ...+. -.=.+|+|||+|+++..+.+...    .++|++.|+.+-
T Consensus       142 ~~~~~~~k~~~V~~~~v~~~~~~~y~~~-Hs~~~~lid~~G~~~~~~~~~~~----~~~i~~~l~~l~  204 (207)
T COG1999         142 EQIEEVAKAYGVFYSKVPLDDSQNYTID-HSAGFYLIDADGRFLGTYDYGEP----PEEIAADLKKLL  204 (207)
T ss_pred             HHHHHHHHHhcceeeecccCCCCCceee-eeeEEEEECCCCeEEEEecCCCC----hHHHHHHHHHHh
Confidence            3456889999987411  111  01111 12367899999999998876444    889999888763

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=80.70  E-value=3.9  Score=31.56  Aligned_cols=46  Identities=24%  Similarity=0.193  Sum_probs=33.3

Q ss_pred             ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCC-CcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          28 DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA-KKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        28 ~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~-g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      +.+++++||+.        ++    ++++++|++ |++.......    .+.+++...|+.+.
T Consensus        73 ~~~l~~~~~v~--------~~----Pt~~~~~~~gg~~~~~~~G~----~~~~~~~~~l~~~~  119 (125)
T cd02951          73 EKELARKYRVR--------FT----PTVIFLDPEGGKEIARLPGY----LPPDEFLAYLEYVQ  119 (125)
T ss_pred             HHHHHHHcCCc--------cc----cEEEEEcCCCCceeEEecCC----CCHHHHHHHHHHHH
Confidence            36889999974        33    599999999 8988766532    34677777777664

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=80.63  E-value=4.6  Score=33.08  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=38.3

Q ss_pred             CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC
Q psy1172          20 PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP   71 (276)
Q Consensus        20 ~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~   71 (276)
                      +.-+|+|.+++..|+.||.........|+- ..|=..||. ||+|.....-|
T Consensus        99 ~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~R-S~RYsmvV~-nGvV~~~~iE~  148 (165)
T COG0678          99 NIKFIPDGNGEFTKAMGMLVDKSDLGFGVR-SWRYSMVVE-NGVVEKLFIEP  148 (165)
T ss_pred             cEEEecCCCchhhhhcCceeecccCCccee-eeeEEEEEe-CCeEEEEEecC
Confidence            455699999999999999876544333332 568889995 99999998854

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=80.48  E-value=2.7  Score=32.91  Aligned_cols=28  Identities=14%  Similarity=0.241  Sum_probs=21.5

Q ss_pred             cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEE
Q psy1172          29 RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSF   68 (276)
Q Consensus        29 ~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~   68 (276)
                      ..+++.||+.        +    .++++|||++|+|+...
T Consensus        89 ~~~~~~~~v~--------~----iPt~~lid~~G~iv~~~  116 (132)
T cd02964          89 ELLEKQFKVE--------G----IPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             HHHHHHcCCC--------C----CCEEEEECCCCCEEchh
Confidence            4677778874        3    36999999999997644

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=80.36  E-value=3  Score=35.25  Aligned_cols=25  Identities=8%  Similarity=-0.011  Sum_probs=21.5

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQ  205 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~  205 (276)
                      ++..|+.|. ...||+|++..+.+.+
T Consensus        77 ~~~~i~~f~-D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          77 GKRVVYVFT-DPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCEEEEEEE-CCCCccHHHHHHHHhh
Confidence            677788888 8999999999988876

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2v2g_A	233	Crystal Structure Of The C45s Mutant Of The Peroxir		3e-35
2v2g_A	233	Crystal Structure Of The C45s Mutant Of The Peroxir		6e-15
1prx_A	224	Horf6 A Novel Human Peroxidase Enzyme Length = 224		3e-35
1prx_A	224	Horf6 A Novel Human Peroxidase Enzyme Length = 224		2e-14
1xcc_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		1e-24
1xcc_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		3e-13
3tb2_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		2e-24
3tb2_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		4e-12
1x0r_A	249	Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len		1e-11
1x0r_A	249	Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len		7e-09
2cv4_A	250	Crystal Structure Of An Archaeal Peroxiredoxin From		1e-11
2cv4_A	250	Crystal Structure Of An Archaeal Peroxiredoxin From		1e-07
2e2g_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		2e-11
2e2g_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		6e-09
2e2m_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		2e-11
2e2m_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		8e-08
2zct_A	249	Oxidation Of Archaeal Peroxiredoxin Involves A Hype		2e-11
2zct_A	249	Oxidation Of Archaeal Peroxiredoxin Involves A Hype		8e-08
3a5w_A	249	Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1		2e-11
3a5w_A	249	Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1		7e-09
3a2w_A	249	Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero		2e-11
3a2w_A	249	Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero		7e-08
3a2v_A	249	Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp		2e-11
3a2v_A	249	Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp		7e-09
1e2y_A	188	Tryparedoxin Peroxidase From Crithidia Fasciculata		6e-09
1e2y_A	188	Tryparedoxin Peroxidase From Crithidia Fasciculata		9e-05
3zvj_D	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		2e-08
3zvj_D	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		8e-07
3tue_A	219	The Structure Of Tryparedoxin Peroxidase I From Lei		2e-08
3tue_A	219	The Structure Of Tryparedoxin Peroxidase I From Lei		2e-05
3ztl_A	222	Crystal Structure Of Decameric Form Of Peroxiredoxi		2e-08
3ztl_A	222	Crystal Structure Of Decameric Form Of Peroxiredoxi		8e-07
3zvj_A	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		3e-08
3zvj_A	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		8e-07
3sbc_A	216	Crystal Structure Of Saccharomyces Cerevisiae Tsa1c		2e-07
1uul_A	202	Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr		6e-07
1uul_A	202	Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr		4e-06
2z9s_A	199	Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI		1e-06
1qq2_A	199	Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi		1e-06
1qq2_A	199	Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi		4e-05
2bmx_A	195	Mycobacterium Tuberculosis Ahpc Length = 195		1e-06
3hy2_A	206	Crystal Structure Of Sulfiredoxin In Complex With P		2e-06
2rii_A	199	Crystal Structure Of Human Peroxiredoxin I In Compl		2e-06
1zye_A	220	Crystal Strucutre Analysis Of Bovine Mitochondrial		9e-06
1qmv_A	197	Thioredoxin Peroxidase B From Red Blood Cells Lengt		1e-05
3emp_A	186	Crystal Structure Of The S-Acetanilide Modified For		4e-05
1yep_A	186	Structural And Biochemical Analysis Of The Link Bet		5e-05
2c0d_A	221	Structure Of The Mitochondrial 2-Cys Peroxiredoxin		6e-05
2c0d_A	221	Structure Of The Mitochondrial 2-Cys Peroxiredoxin		2e-04
3gkk_A	163	Insights Into The Alkyl Peroxide Reduction Activity		7e-05
1yex_A	186	Structural And Biochemical Analysis Of The Link Bet		8e-05
1zof_A	198	Crystal Structure Of Alkyl Hydroperoxide-Reductase		8e-05
1zof_A	198	Crystal Structure Of Alkyl Hydroperoxide-Reductase		1e-04
1s0u_A	408	Eif2gamma Apo Length = 408		1e-04
3sjz_A	409	The Structure Of Aif2gamma Subunit Delta 41-45 From		1e-04
2aho_A	414	Structure Of The Archaeal Initiation Factor Eif2 Al		1e-04
2pmd_A	415	The Structures Of Aif2gamma Subunit From The Archae		1e-04
3tjk_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		1e-04
3tjk_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		5e-04
3pen_A	403	Structure Of Archaeal Initiation Factor Aif2gamma S		1e-04
1yf1_A	186	Structural And Biochemical Analysis Of The Link Bet		1e-04
3tjj_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		1e-04
1yf0_A	186	Structural And Biochemical Analysis Of The Link Bet		2e-04
3tkp_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		2e-04
3tkp_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		6e-04
3tjb_A	254	Crystal Structure Of Wild-Type Human Peroxiredoxin		2e-04
3tjb_A	254	Crystal Structure Of Wild-Type Human Peroxiredoxin		6e-04
3tkr_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		2e-04
3tkr_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		9e-04
2pn8_A	211	Crystal Structure Of Human Peroxiredoxin 4 (Thiored		2e-04
2pn8_A	211	Crystal Structure Of Human Peroxiredoxin 4 (Thiored		4e-04
3qpm_A	240	Crystal Structure Of Peroxiredoxin Prx4 From Pseudo		2e-04
3tjf_A	254	Crystal Structure Of Human Peroxiredoxin Iv C51a Mu		2e-04
3tjf_A	254	Crystal Structure Of Human Peroxiredoxin Iv C51a Mu		5e-04
3tks_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		2e-04
1n8j_A	186	Crystal Structure Of Ahpc With Active Site Cysteine		4e-04
2d74_A	419	Crystal Structure Of Translation Initiation Factor		5e-04
1kk0_A	410	Structure Of The Large Gamma Subunit Of Initiation		5e-04
1kjz_A	410	Structure Of The Large Gamma Subunit Of Initiation		5e-04
1kk3_A	410	Structure Of The Wild-Type Large Gamma Subunit Of I		6e-04
3gkn_A	163	Insights Into The Alkyl Peroxide Reduction Activity		6e-04
3gkm_A	163	Insights Into The Alkyl Peroxide Reduction Activity		6e-04

>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233

Iteration: 1
 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 84/104 (80%)
Query: 17  GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR 76
           G +PYPIIAD+ R LAV+LGM+DP E+ S GMPLTCRAVFII P KKL+LS LYPATTGR
Sbjct: 92  GDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGR 151
Query: 77  NFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
           NF EILRV+DSLQLT  KKVATP DW+ G    V PG+ +++++
Sbjct: 152 NFSEILRVIDSLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAK 195

>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           WG+LFSHP DFTPV TTEL RV+QL  +F++R  K+IALSCD+V  H +W
Sbjct: 31  WGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEW 80

>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224

Iteration: 1
 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 96/128 (75%), Gaps = 2/128 (1%)
Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
           +DI +Y+S  E   KLP+PII D++R LA+ LGMLDP EKD KGMP+T R VF+  P KK
Sbjct: 84  KDINAYNSE-EPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKK 142
Query: 64  LRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           L+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++ KL
Sbjct: 143 LKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK-KL 201
Query: 124 TCKPIFSR 131
             K +F++
Sbjct: 202 FPKGVFTK 209

>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 159 LPGCSLLG-----CQASLVILECSIPAF----WGILFSHPSDFTPVCTTELARVLQLIKE 209
           +PG  LLG      +A+  +       F    WGILFSHP DFTPV TTEL R  +L  E
Sbjct: 1   MPGGLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVXTTELGRAAKLAPE 60
Query: 210 FEQRTCKVIALSCDSVESHHDWIK 233
           F +R  K+IALS DSVE H  W K
Sbjct: 61  FAKRNVKLIALSIDSVEDHLAWSK 84

>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           +++DI+ Y        K   PI+ D+ R LA +L ++D  EKD  G+PLTCR +F I P 
Sbjct: 82  WIEDIKYYGKLN----KWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPE 137
Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGL----VSK 117
           KK++ + LYPATTGRN  EILRVL SLQLT T  VATPV+W  G +  V P L    +SK
Sbjct: 138 KKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISK 197
Query: 118 DSEGKLT 124
             + ++T
Sbjct: 198 HFKNEIT 204

>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235
           W ILFSHP+DFTPVCTTELA + ++ ++F +  CK+I  SC+S ESH  WI+ +
Sbjct: 33  WAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDI 86

>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 86/143 (60%), Gaps = 13/143 (9%)
Query: 2   FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61
           +++DI+ Y        K   PI+ D+ R LA +L ++D  EKD  G+PLTCR +F I P 
Sbjct: 82  WIEDIKYYGKLN----KWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPE 137
Query: 62  KKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGL----VSK 117
           KK++ + LYPATTGRN  EILRVL SLQLT T  VATPV+W  G +  V P L    +SK
Sbjct: 138 KKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISK 197
Query: 118 DSEGKLT-----CKPIFSRIVSL 135
             + ++T      K  + R V+L
Sbjct: 198 HFKNEITKVEMPSKKKYLRFVNL 220

>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 40/54 (74%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235
           W ILFSHP+DFTPV TTELA + ++ ++F +  CK+I  SC+S ESH  WI+ +
Sbjct: 33  WAILFSHPNDFTPVXTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDI 86

>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LG+L      ++    T R VFI+D    +R    YP   GR 
Sbjct: 95  RIPFPIIADPQGTVARRLGLLH-----AESATHTVRGVFIVDARGVIRTXLYYPXELGRL 149
Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR++ +L+L D+ K A P DW
Sbjct: 150 VDEILRIVKALKLGDSLKRAVPADW 174

>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LFSHP+DFTPVCTTE     +  ++F++    +I LS DSV SH  W + + R
Sbjct: 35  WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIER 90

>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LG+L      ++    T R VFI+D    +R    YP   GR 
Sbjct: 96  RIPFPIIADPQGTVARRLGLLH-----AESATHTVRGVFIVDARGVIRTXLYYPXELGRL 150
Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR++ +L+L D+ K A P DW
Sbjct: 151 VDEILRIVKALKLGDSLKRAVPADW 175

>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LFSHP+DFTPV TTE     +  ++F++    +I LS DSV SH  W + + R
Sbjct: 36  WFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIER 91

>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LG+L      ++    T R VFI+D    +R    YP   GR 
Sbjct: 96  RIPFPIIADPQGTVARRLGLLH-----AESATHTVRGVFIVDARGVIRTMLYYPMELGRL 150
Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR++ +L+L D+ K A P DW
Sbjct: 151 VDEILRIVKALKLGDSLKRAVPADW 175

>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LFSHP+DFTPVCTTE     +  ++F++    +I LS DSV SH  W + + R
Sbjct: 36  WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIER 91

>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LG+L      ++    T R VFI+D    +R    YP   GR 
Sbjct: 96  RIPFPIIADPQGTVARRLGLLH-----AESATHTVRGVFIVDARGVIRTMLYYPMELGRL 150
Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR++ +L+L D+ K A P DW
Sbjct: 151 VDEILRIVKALKLGDSLKRAVPADW 175

>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LFSHP+DFTPV TTE     +  ++F++    +I LS DSV SH  W + + R
Sbjct: 36  WFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIER 91

>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LG+L      ++    T R VFI+D    +R    YP   GR 
Sbjct: 95  RIPFPIIADPQGTVARRLGLLH-----AESATHTVRGVFIVDARGVIRTMLYYPMELGRL 149
Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR++ +L+L D+ K A P DW
Sbjct: 150 VDEILRIVKALKLGDSLKRAVPADW 174

>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LFSHP+DFTPV TTE     +  ++F++    +I LS DSV SH  W + + R
Sbjct: 35  WFVLFSHPADFTPVXTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIER 90

>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LG+L      ++    T R VFI+D    +R    YP   GR 
Sbjct: 95  RIPFPIIADPQGTVARRLGLLH-----AESATHTVRGVFIVDARGVIRTMLYYPMELGRL 149
Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR++ +L+L D+ K A P DW
Sbjct: 150 VDEILRIVKALKLGDSLKRAVPADW 174

>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LFSHP+DFTPVCTTE     +  ++F++    +I LS DSV SH  W + + R
Sbjct: 35  WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIER 90

>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LG+L      ++    T R VFI+D    +R    YP   GR 
Sbjct: 95  RIPFPIIADPQGTVARRLGLLH-----AESATHTVRGVFIVDARGVIRTMLYYPMELGRL 149
Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR++ +L+L D+ K A P DW
Sbjct: 150 VDEILRIVKALKLGDSLKRAVPADW 174

>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LFSHP+DFTPV TTE     +  ++F++    +I LS DSV SH  W + + R
Sbjct: 35  WFVLFSHPADFTPVSTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIER 90

>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
           ++P+PIIAD   ++A +LG+L      ++    T R VFI+D    +R    YP   GR 
Sbjct: 95  RIPFPIIADPQGTVARRLGLLH-----AESATHTVRGVFIVDARGVIRTMLYYPMELGRL 149
Query: 78  FDEILRVLDSLQLTDTKKVATPVDW 102
            DEILR++ +L+L D+ K A P DW
Sbjct: 150 VDEILRIVKALKLGDSLKRAVPADW 174

>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237
           W +LFSHP+DFTPVCTTE     +  ++F++    +I LS DSV SH  W + + R
Sbjct: 35  WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIER 90

>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G    P +AD+ +++A   G+LD   +DS    +  R VFIIDP  KLR   +     
Sbjct: 96  GLGPXAIPXLADKTKAIARAYGVLD---EDSG---VAYRGVFIIDPNGKLRQIIINDXPI 149
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
           GRN +E++R++++LQ  +      P +WK G
Sbjct: 150 GRNVEEVIRLVEALQFVEEHGEVCPANWKKG 180

>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           +LF +P DFT VC TE+ +     K F +   +VI+ SCDS  SH  W
Sbjct: 40  VLFFYPXDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQW 87

>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P++AD+ + ++   G+ D  E+D        R +FIIDP   LR   L     
Sbjct: 126 GLGHMKIPLLADRKQEISKAYGVFD--EEDGNAF----RGLFIIDPNGILRQITLNDKPV 179
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR+LD+ Q  +      PV+WK G  
Sbjct: 180 GRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQH 212

>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           +LF +P+DFT VC TE+      ++EF  R C+VIA S DS  SH  W
Sbjct: 70  VLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAW 117

>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  PI+AD+ +++A   G+L+    +S+G  +  R +FIIDP   LR   +     
Sbjct: 116 GLGTMAIPILADKTKNIARSYGVLE----ESQG--VAYRGLFIIDPHGMLRQITVNDMPV 169
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
           GR+ +E+LR+L++ Q  +      P +WK G
Sbjct: 170 GRSVEEVLRLLEAFQFVEKHGEVCPANWKKG 200

>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           W +LF +P DFT VC TE+      +  F +  C+V+A S DS  +H  W     +   L
Sbjct: 58  WVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGL 117
Query: 242 GLL-INLSVDDFKEVEGRSRRFQESLNTYGYLGTYV 276
           G + I +  D  K +  RS    E      Y G ++
Sbjct: 118 GTMAIPILADKTKNI-ARSYGVLEESQGVAYRGLFI 152

>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P++AD+ + ++   G+ D  E+D        R +FIIDP   LR   +     
Sbjct: 129 GLGHMKIPLLADRKQEISKAYGVFD--EEDGNAF----RGLFIIDPNGILRQITINDKPV 182
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR+LD+ Q  +      PV+WK G  
Sbjct: 183 GRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQH 215

>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           +LF +P+DFT VC TE+      ++EF  R C+VIA S DS  SH  W
Sbjct: 73  VLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAW 120

>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P++AD+ + ++   G+ D  E+D        R +FIIDP   LR   +     
Sbjct: 126 GLGHMKIPLLADRKQEISKAYGVFD--EEDGNAF----RGLFIIDPNGILRQITINDKPV 179
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR+LD+ Q  +      PV+WK G  
Sbjct: 180 GRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQH 212

>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           +LF +P+DFT VC TE+      ++EF  R C+VIA S DS  SH  W
Sbjct: 70  VLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAW 117

>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P++AD + SL+   G+L  +E++     +  R +FIIDP   +R   +     
Sbjct: 112 GLGPINIPLLADTNHSLSRDYGVL--IEEEG----VALRGLFIIDPKGVIRHITINDLPV 165
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
           GRN DE LR++++ Q TD      P +W  G
Sbjct: 166 GRNVDEALRLVEAFQWTDKNGTVLPCNWTPG 196

>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G++  PI+AD+ + +    G+L    K+  G  +  R +FIIDP + LR   +     
Sbjct: 96  GLGQMNIPILADKTKCIMKSYGVL----KEEDG--VAYRGLFIIDPKQNLRQITVNDLPV 149
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
           GR+ DE LR++ + Q  +      P +WK G
Sbjct: 150 GRDVDEALRLVKAFQFVEKHGEVCPANWKPG 180

>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W +LF +P DFT VC TE+ +    +KEF    C+V+A S DS  SH  W
Sbjct: 38  WLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAW 87

>pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D  R++A   G+L   E       ++ R +FIID    LR   +     
Sbjct: 96  GLGPMNIPLVSDPKRTIAQDYGVLKADEG------ISFRGLFIIDDKGILRQITINDLPV 149
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
           GR+ DEILR++ + Q TD      P  WK G +  ++P  V+K  E
Sbjct: 150 GRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDT-IKPD-VNKSKE 193

>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D  R++A   G+L   E       ++ R +FIID    LR   +     
Sbjct: 96  GLGPMNIPLVSDPKRTIAQDYGVLKADEG------ISFRGLFIIDDKGILRQITINDLPV 149
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
           GR+ DEILR++ + Q TD      P  WK G +  ++P  V+K  E
Sbjct: 150 GRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDT-IKPD-VNKSKE 193

>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGL 243
           + F +P DFT VC TE+       +EF++  C+VI  S DS  SH  WI    +   LG 
Sbjct: 40  VFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFSHLAWINTPKKQGGLGP 99
Query: 244 L 244
           +
Sbjct: 100 M 100

>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           P  W ++F  P DFT VC TE+A   +L  EFE R  +++ +S DS  +H  W
Sbjct: 44  PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQW 96

>pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D  R++A   G+L   E       ++ R +FIID    LR   +     
Sbjct: 96  GLGPMNIPLVSDPKRTIAQDYGVLKADEG------ISFRGLFIIDDKGILRQITVNDLPV 149
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD     +P  WK G +
Sbjct: 150 GRSVDETLRLVQAFQFTDKHGEVSPAGWKPGSD 182

>pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D  R++A   G+L   E       ++ R +FIID    LR   +     
Sbjct: 96  GLGPMNIPLVSDPKRTIAQDYGVLKADEG------ISFRGLFIIDDKGILRQITVNDLPV 149
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD     +P  WK G +
Sbjct: 150 GRSVDETLRLVQAFQFTDKHGEVSPAGWKPGSD 182

>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 175 ECSIPAFWG---ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           E S+  F G   +LF +P DFT VC TE+        EF    C+V+A+S DS  SH  W
Sbjct: 48  EISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAW 107
Query: 232 IKALVRDCILGLL 244
           I    ++  LG +
Sbjct: 108 INTPRKNGGLGHM 120

>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G L  P++AD  R L+   G+L    K  +G  +  R +FIID    LR   +     
Sbjct: 94  GLGPLNIPLLADVTRRLSEDYGVL----KTDEG--IAYRGLFIIDGKGVLRQITVNDLPV 147
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGL 114
           GR+ DE LR++ + Q TD      P  WK G +  ++P +
Sbjct: 148 GRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDT-IKPNV 186

>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW- 231
           + E      W + F +P+DFT VC TEL  V    +E ++    V ++S D+  +H  W 
Sbjct: 23  VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWH 82
Query: 232 --------IK-ALVRDCILGLLINLSVDDFKEVEGRSRR 261
                   IK A++ D    L  N   D+ +E EG + R
Sbjct: 83  SSSETIAKIKYAMIGDPTGALTRNF--DNMREDEGLADR 119

>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW- 231
           + E      W + F +P+DFT VC TEL  V    +E ++    V ++S D+  +H  W 
Sbjct: 23  VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWH 82
Query: 232 --------IK-ALVRDCILGLLINLSVDDFKEVEGRSRR 261
                   IK A++ D    L  N   D+ +E EG + R
Sbjct: 83  SSSETIAKIKYAMIGDPTGALTRNF--DNMREDEGLADR 119

>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G + + +++D ++ ++    +L              R +FIID    +R   +     
Sbjct: 116 GIGNVEFTLVSDINKDISKNYNVL-------YDNSFALRGLFIIDKNGCVRHQTVNDLPI 168
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GRN  E+LR +DS+   DT     P++WK G +
Sbjct: 169 GRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQK 201

>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 166 GCQASLVILECSIPAFWG----ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS 221
           G   +  I+   + +F G     L  +P ++T VC TE+    + IK+FE +  +++ +S
Sbjct: 38  GLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGIS 97
Query: 222 CDSVESHHDW 231
            DSV SH  W
Sbjct: 98  VDSVYSHLAW 107

>pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W +++ +P D TP CTTE      L+ EF++   K++ +S DSV+SH ++
Sbjct: 37  WLVIYFYPKDSTPGCTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNF 86

>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW- 231
           + E      W + F +P+DFT VC TEL  V    +E ++    V ++S D+   H  W 
Sbjct: 23  VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFDHKAWH 82
Query: 232 --------IK-ALVRDCILGLLINLSVDDFKEVEGRSRR 261
                   IK A++ D    L  N   D+ +E EG + R
Sbjct: 83  SSSETIAKIKYAMIGDPTGALTRNF--DNMREDEGLADR 119

>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G++ +P++AD  +S++    +L   E+      +  R  F+ID   K+R + +     
Sbjct: 93  GIGQVSFPMVADITKSISRDYDVL--FEE-----AIALRGAFLIDKNMKVRHAVINDLPL 145
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
           GRN DE+LR++D+L   +      P  W+ G
Sbjct: 146 GRNADEMLRMVDALLHFEEHGEVCPAGWRKG 176

>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG 242
           ILF  P DFT VC TE+    + +K+F ++   VI +S DS + H  W    V    +G
Sbjct: 37  ILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIG 95

>pdb|1S0U|A Chain A, Eif2gamma Apo Length = 408

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 102 WKVGMEIEVRPGLVSKDSEGKLT-CKPIFSRIVSLFAEQNELQFAVPGGLI 151
           +KVG EIE+RPG+  K +EG  T  KP+ ++IVSL A    L+ A PGGLI
Sbjct: 241 FKVGDEIEIRPGI--KVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLI 289

>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From Archaeon Sulfolobus Solfataricus Complexed With Gdp And Gdpnp Length = 409

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 WKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI---DRFAAAL 158
           +KV  EI+V PGL   + +GK++ +PIF++I S+     E + A PGGL+        +L
Sbjct: 241 FKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSL 299
Query: 159 LPGCSLLGCQASLVILECSIPAFWGILFSH 188
               +LLG   +L   +  +P  W I   +
Sbjct: 300 TKADNLLGSIITLA--DAEVPVLWNIRIKY 327

>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 WKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI---DRFAAAL 158
           +KV  EI+V PGL   + +GK++ +PIF++I S+     E + A PGGL+        +L
Sbjct: 246 FKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSL 304
Query: 159 LPGCSLLGCQASLVILECSIPAFWGILFSH 188
               +LLG   +L   +  +P  W I   +
Sbjct: 305 TKADNLLGSIITLA--DAEVPVLWNIRIKY 332

>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 415

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 WKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI---DRFAAAL 158
           +KV  EI+V PGL   + +GK++ +PIF++I S+     E + A PGGL+        +L
Sbjct: 247 FKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSL 305
Query: 159 LPGCSLLGCQASLVILECSIPAFWGILFSH 188
               +LLG   +L   +  +P  W I   +
Sbjct: 306 TKADNLLGSIITLA--DAEVPVLWNIRIKY 333

>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  +  G   T R +FIID    LR   L     
Sbjct: 151 GLGPIRIPLLSDLTHQISKDYG----VYLEDSGH--TLRGLFIIDDKGILRQITLNDLPV 204
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           GR+ DE LR++ + Q TD      P  WK G E       +  D  GKL
Sbjct: 205 GRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSET------IIPDPAGKL 247

>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG 242
           + F +P DFT VC TE+      ++EF     +V+A S DS  +H  WI    R   LG
Sbjct: 95  VFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLG 153

>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit Delta 37-47 From Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 403

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 102 WKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI---DRFAAAL 158
           +KV  EI+V PGL   + +GK++ +PIF++I S+     E + A PGGL+        +L
Sbjct: 235 FKVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSL 293
Query: 159 LPGCSLLGCQASLVILECSIPAFWGILFSH 188
               +LLG   +L   +  +P  W I   +
Sbjct: 294 TKADNLLGSIITLA--DAEVPVLWNIRIKY 321

>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW- 231
           + E      W + F +P+DFT VC TEL  V    +E ++    V ++S D+   H  W 
Sbjct: 23  VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFVHKAWH 82
Query: 232 --------IK-ALVRDCILGLLINLSVDDFKEVEGRSRR 261
                   IK A++ D    L  N   D+ +E EG + R
Sbjct: 83  SSSETIAKIKYAMIGDPTGALTRNF--DNMREDEGLADR 119

>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  +  G   T R +FIID    LR   L     
Sbjct: 151 GLGPIRIPLLSDLTHQISKDYG----VYLEDSGH--TLRGLFIIDDKGILRQITLNDLPV 204
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           GR+ DE LR++ + Q TD      P  WK G E       +  D  GKL
Sbjct: 205 GRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSET------IIPDPAGKL 247

>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW- 231
           + E      W + F +P+DFT VC TEL  V    +E ++    V ++S D+   H  W 
Sbjct: 23  VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFIHKAWH 82
Query: 232 --------IK-ALVRDCILGLLINLSVDDFKEVEGRSRR 261
                   IK A++ D    L  N   D+ +E EG + R
Sbjct: 83  SSSETIAKIKYAMIGDPTGALTRNF--DNMREDEGLADR 119

>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  +  G   T R +FIID    LR   L     
Sbjct: 143 GLGPIRIPLLSDLTHQISKDYG----VYLEDSGH--TLRGLFIIDDKGILRQITLNDLPV 196
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD      P  WK G E
Sbjct: 197 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 229

>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG 242
           + F +P DFT VC TE+      ++EF     +V+A S DS  +H  WI    R   LG
Sbjct: 87  VFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLG 145

>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  +  G   T R +FIID    LR   L     
Sbjct: 151 GLGPIRIPLLSDLTHQISKDYG----VYLEDSGH--TLRGLFIIDDKGILRQITLNDLPV 204
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           GR+ DE LR++ + Q TD      P  WK G E       +  D  GKL
Sbjct: 205 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSET------IIPDPAGKL 247

>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG 242
           + F +P DFT VC TE+      ++EF     +V+A S DS  +H  WI    R   LG
Sbjct: 95  VFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLG 153

>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  +  G   T R +FIID    LR   L     
Sbjct: 143 GLGPIRIPLLSDLTHQISKDYG----VYLEDSGH--TLRGLFIIDDKGILRQITLNDLPV 196
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD      P  WK G E
Sbjct: 197 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 229

>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG 242
           + F +P DFT VC TE+      ++EF     +V+A S DS   H  WI    R   LG
Sbjct: 87  VFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFEHLAWINTPRRQGGLG 145

>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  +  G   T R +FIID    LR   L     
Sbjct: 108 GLGPIRIPLLSDLTHQISKDYG----VYLEDSGH--TLRGLFIIDDKGILRQITLNDLPV 161
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           GR+ DE LR++ + Q TD      P  WK G E       +  D  GKL
Sbjct: 162 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSET------IIPDPAGKL 204

>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG 242
           + F +P DFT VC TE+      ++EF     +V+A S DS  +H  WI    R   LG
Sbjct: 52  VFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLG 110

>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  + +G   T R +FIID    LR   +     
Sbjct: 137 GLGPMKIPLLSDLTHQISKDYG----VYLEDQGH--TLRGLFIIDEKGVLRQITMNDLPV 190
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           GR+ DE LR++ + Q TD      P  WK G +       +  D  GKL
Sbjct: 191 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDT------IIPDPSGKL 233

>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  +  G   T R +FIID    LR   L     
Sbjct: 151 GLGPIRIPLLSDLTHQISKDYG----VYLEDSGH--TLRGLFIIDDKGILRQITLNDLPV 204
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           GR+ DE LR++ + Q TD      P  WK G E       +  D  GKL
Sbjct: 205 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSET------IIPDPAGKL 247

>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG 242
           + F +P DFT VC TE+      ++EF     +V+A S DS  +H  WI    R   LG
Sbjct: 95  VFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLG 153

>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G    V  +  G   T R +FIID    LR   L     
Sbjct: 143 GLGPIRIPLLSDLTHQISKDYG----VYLEDSGH--TLRGLFIIDDKGILRQITLNDLPV 196
Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD      P  WK G E
Sbjct: 197 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 229

>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW- 231
           + E      W + F +P+DFT V  TEL  V    +E ++    V ++S D+  +H  W 
Sbjct: 23  VTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWH 82
Query: 232 --------IK-ALVRDCILGLLINLSVDDFKEVEGRSRR 261
                   IK A++ D    L  N   D+ +E EG + R
Sbjct: 83  SSSETIAKIKYAMIGDPTGALTRNF--DNMREDEGLADR 119

>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 419

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG V  +  G++  +PI + IVSL A    ++ A PGGL+
Sbjct: 245 KVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLV 292

>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Length = 410

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG V  +  G++  +PI + IVSL A    ++ A PGGL+
Sbjct: 244 KVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLV 291

>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG V  +  G++  +PI + IVSL A    ++ A PGGL+
Sbjct: 244 KVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLV 291

>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG V  +  G++  +PI + IVSL A    ++ A PGGL+
Sbjct: 244 KVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLV 291

>pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped Intermediate/ligand Complex Structures Length = 163

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W +++ +P D TP  TTE      L+ EF++   K++ +S DSV+SH ++
Sbjct: 37  WLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNF 86

>pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W +++ +P D TP  TTE      L+ EF++   K++ +S DSV+SH ++
Sbjct: 37  WLVIYFYPKDSTPGSTTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNF 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	1e-55
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	3e-28
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	2e-54
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	1e-28
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	4e-54
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	1e-28
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	5e-44
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	2e-27
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	5e-17
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	2e-15
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	3e-16
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	6e-15
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	5e-16
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	2e-15
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	1e-14
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	2e-15
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	1e-14
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	2e-15
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	1e-14
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	3e-15
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	7e-15
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	2e-14
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	8e-15
1e2y_A	188	TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin	1e-13
1e2y_A	188	TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin	3e-13
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	2e-13
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	1e-12
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	2e-13
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	7e-13
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	2e-13
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	7e-13
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	2e-13
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	6e-13
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	2e-13
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	1e-12
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	4e-13
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	9e-13
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	5e-13
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	3e-12
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	6e-13
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	2e-12
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	1e-12
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	2e-09
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	2e-12
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	6e-12
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	4e-08
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	5e-05
2cx4_A	164	Bacterioferritin comigratory protein; oxidoreducta	2e-07
2cx4_A	164	Bacterioferritin comigratory protein; oxidoreducta	1e-06
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	4e-06
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	4e-06
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	7e-06
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	8e-06
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	1e-05
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	1e-05
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	2e-05
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	2e-05
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	2e-05

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224

 Score =  177 bits (452), Expect = 1e-55
 Identities = 70/118 (59%), Positives = 88/118 (74%), Gaps = 1/118 (0%)

Query: 3   LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
            +DI +Y+S      KLP+PII D++R LA+ LGMLDP EKD KGMP+T R VF+  P K
Sbjct: 83  SKDINAYNSEE-PTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDK 141

Query: 63  KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
           KL+LS LYPATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++
Sbjct: 142 KLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK 199

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224

 Score =  106 bits (268), Expect = 3e-28
 Identities = 35/52 (67%), Positives = 38/52 (73%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           WGILFSHP DFTPVCTTEL R  +L  EF +R  K+IALS DSVE H  W K
Sbjct: 33  WGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSK 84

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233

 Score =  175 bits (445), Expect = 2e-54
 Identities = 72/118 (61%), Positives = 89/118 (75%), Gaps = 3/118 (2%)

Query: 3   LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
            +D++  S      G +PYPIIAD+ R LAV+LGM+DP E+ S GMPLTCRAVFII P K
Sbjct: 81  SEDVKCLSGVK---GDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDK 137

Query: 63  KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
           KL+LS LYPATTGRNF EILRV+DSLQLT  KKVATP DW+ G    V PG+ +++++
Sbjct: 138 KLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAK 195

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233

 Score =  108 bits (272), Expect = 1e-28
 Identities = 32/52 (61%), Positives = 41/52 (78%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           WG+LFSHP DFTPV TTEL RV+QL  +F++R  K+IALSCD+V  H +W +
Sbjct: 31  WGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSE 82

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220

 Score =  173 bits (442), Expect = 4e-54
 Identities = 57/121 (47%), Positives = 73/121 (60%), Gaps = 4/121 (3%)

Query: 3   LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
           ++DI+ Y        K   PI+ D+ R LA +L ++D  EKD  G+PLTCR +F I P K
Sbjct: 83  IEDIKYYG----KLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEK 138

Query: 63  KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGK 122
           K++ + LYPATTGRN  EILRVL SLQLT T  VATPV+W  G +  V P L   +    
Sbjct: 139 KIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKH 198

Query: 123 L 123
            
Sbjct: 199 F 199

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220

 Score =  108 bits (271), Expect = 1e-28
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           W ILFSHP+DFTPVCTTELA + ++ ++F +  CK+I  SC+S ESH  WI+
Sbjct: 33  WAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIE 84

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249

 Score =  149 bits (377), Expect = 5e-44
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 3   LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
            + I+ +        ++P+PIIAD   ++A +LG+L            T R VFI+D   
Sbjct: 85  KEWIERH-----IGVRIPFPIIADPQGTVARRLGLLHAESATH-----TVRGVFIVDARG 134

Query: 63  KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWK 103
            +R    YP   GR  DEILR++ +L+L D+ K A P DW 
Sbjct: 135 VIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWP 175

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249

 Score =  105 bits (264), Expect = 2e-27
 Identities = 25/52 (48%), Positives = 34/52 (65%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           W +LFSHP+DFTPVCTTE     +  ++F++    +I LS DSV SH  W +
Sbjct: 35  WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKE 86

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198

 Score = 76.1 bits (188), Expect = 5e-17
 Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
            G G++ +P++AD  +S++    +L       + + L  R  F+ID   K+R + +    
Sbjct: 92  GGIGQVSFPMVADITKSISRDYDVLFE-----EAIAL--RGAFLIDKNMKVRHAVINDLP 144

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME-IEVRPGLVSK 117
            GRN DE+LR++D+L   +      P  W+ G + ++     V++
Sbjct: 145 LGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAE 189

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
             ILF  P DFT VC TE+    + +K+F ++   VI +S DS + H  W    V    +
Sbjct: 35  GVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGI 94

Query: 242 G 242
           G
Sbjct: 95  G 95

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
            G G + + +++D  +S++    +L         + L  RA  +ID    ++   +    
Sbjct: 111 GGIGNIKHTLLSDITKSISKDYNVLFD-----DSVSL--RAFVLIDMNGIVQHLLVNNLA 163

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
            GR+ DEILR++D++Q  +      P +W+ G  
Sbjct: 164 IGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKV 197

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + +L+ +P DFT VC +E+  + + +  F +R  +++  S DS  +H  W K  +    +
Sbjct: 54  YVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGI 113

Query: 242 G 242
           G
Sbjct: 114 G 114

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403

 Score = 76.1 bits (188), Expect = 5e-16
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPG 161
           KV  EI+V PGL   + +GK++ +PIF++I S+     E + A PGGL+      L P 
Sbjct: 236 KVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAI-GTYLDPS 292

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
            G G + + +I+D  +S+A    +L       + + L  RA  +ID    ++   +    
Sbjct: 90  GGIGNIKHTLISDISKSIARSYDVLFN-----ESVAL--RAFVLIDKQGVVQHLLVNNLA 142

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME-IEVRPGLVSK 117
            GR+ DEILR++D+LQ  +      P +W+ G E ++     V+K
Sbjct: 143 LGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESMKPSEEGVAK 187

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + +L+ +P DFT VC +E+  + + +  F++R  +++  S DS  +H  W K  +    +
Sbjct: 33  YVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGI 92

Query: 242 G 242
           G
Sbjct: 93  G 93

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G+         G  L  R +FIID    LR   L     
Sbjct: 151 GLGPIRIPLLSDLTHQISKDYGVYLEDS----GHTL--RGLFIIDDKGILRQITLNDLPV 204

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD      P  WK G E
Sbjct: 205 GRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSE 237

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + + F +P DFT VC TE+      ++EF     +V+A S DS  +H  WI    R   L
Sbjct: 93  YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGL 152

Query: 242 G 242
           G
Sbjct: 153 G 153

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G+         G  L  R +FIID    LR   L     
Sbjct: 108 GLGPIRIPLLSDLTHQISKDYGVYLEDS----GHTL--RGLFIIDDKGILRQITLNDLPV 161

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD      P  WK G E
Sbjct: 162 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 194

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + + F +P DFT VC TE+      ++EF     +V+A S DS  +H  WI    R   L
Sbjct: 50  YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGL 109

Query: 242 G 242
           G
Sbjct: 110 G 110

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPG 161
           KVG EIE+RPG V  +  G++  +PI + IVSL A    ++ A PGGL+      L P 
Sbjct: 244 KVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVG-VGTKLDPY 300

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240

 Score = 71.2 bits (175), Expect = 7e-15
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P+++D    ++   G+    +    G  L  R +FIID    LR   +     
Sbjct: 137 GLGPMKIPLLSDLTHQISKDYGVYLEDQ----GHTL--RGLFIIDEKGVLRQITMNDLPV 190

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD      P  WK G +
Sbjct: 191 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSD 223

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + + F +P DFT VC TE+      + EF     +V+A S DS  +H  WI    +   L
Sbjct: 79  YLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGL 138

Query: 242 G 242
           G
Sbjct: 139 G 139

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPG 161
           KVG EIE+RPG+   +   K   KP+ ++IVSL A    L+ A PGGLI      L P 
Sbjct: 242 KVGDEIEIRPGIKVTE-GNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIG-VGTTLDPY 298

>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188

 Score = 66.8 bits (164), Expect = 1e-13
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P++AD+ +++A   G+LD       G+    R VFIIDP  KLR   +     
Sbjct: 96  GLGPMAIPMLADKTKAIARAYGVLDEDS----GVAY--RGVFIIDPNGKLRQIIINDMPI 149

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GRN +E++R++++LQ  +      P +WK G  
Sbjct: 150 GRNVEEVIRLVEALQFVEEHGEVCPANWKKGDA 182

>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + +LF +P DFT VC TE+ +     K F +   +VI+ SCDS  SH  W     +   L
Sbjct: 38  YVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGL 97

Query: 242 G 242
           G
Sbjct: 98  G 98

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
            G G +  P++AD+ + ++   G+ D  +    G     R +FIIDP   LR   +    
Sbjct: 128 GGLGHMKIPLLADRKQEISKAYGVFDEED----GNAF--RGLFIIDPNGILRQITINDKP 181

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
            GR+ DE LR+LD+ Q  +      PV+WK G  
Sbjct: 182 VGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQH 215

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + +LF +P+DFT VC TE+      ++EF  R C+VIA S DS  SH  W     +   L
Sbjct: 71  YVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGL 130

Query: 242 G 242
           G
Sbjct: 131 G 131

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 22/128 (17%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G++  PI+AD+ + +    G+L   +    G+    R +FIIDP + LR   +     
Sbjct: 96  GLGQMNIPILADKTKCIMKSYGVLKEED----GVAY--RGLFIIDPKQNLRQITVNDLPV 149

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVS 134
           GR+ DE LR++ + Q  +      P +WK                 G  T KP   +   
Sbjct: 150 GRDVDEALRLVKAFQFVEKHGEVCPANWK----------------PGDKTMKPDPEKSKE 193

Query: 135 LFAEQNEL 142
            F    +L
Sbjct: 194 YFGAVAKL 201

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202

 Score = 64.9 bits (159), Expect = 7e-13
 Identities = 25/61 (40%), Positives = 33/61 (54%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           W +LF +P DFT VC TE+ +    +KEF    C+V+A S DS  SH  W     +   L
Sbjct: 38  WLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGL 97

Query: 242 G 242
           G
Sbjct: 98  G 98

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 22/127 (17%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +  P++AD + SL+   G+L   E    G+ L  R +FIIDP   +R   +     
Sbjct: 112 GLGPINIPLLADTNHSLSRDYGVLIEEE----GVAL--RGLFIIDPKGVIRHITINDLPV 165

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVS 134
           GRN DE LR++++ Q TD      P +W                  G  T KP       
Sbjct: 166 GRNVDEALRLVEAFQWTDKNGTVLPCNWT----------------PGAATIKPTVEDSKE 209

Query: 135 LFAEQNE 141
            F   N+
Sbjct: 210 YFEAANK 216

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + +L   P  FT V  TE+    +  K+FE++  +V+  S DS  S   W     ++  L
Sbjct: 54  YVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGL 113

Query: 242 G 242
           G
Sbjct: 114 G 114

>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A* Length = 197

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G L  P++AD  R L+   G+L   E    G+    R +FIID    LR   +     
Sbjct: 94  GLGPLNIPLLADVTRRLSEDYGVLKTDE----GIAY--RGLFIIDGKGVLRQITVNDLPV 147

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD      P  WK G +
Sbjct: 148 GRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSD 180

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
            G G + + +++D ++ ++    +L           L  R +FIID    +R   +    
Sbjct: 115 GGIGNVEFTLVSDINKDISKNYNVLYD-----NSFAL--RGLFIIDKNGCVRHQTVNDLP 167

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
            GRN  E+LR +DS+   DT     P++WK G +
Sbjct: 168 IGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQK 201

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           +  L  +P ++T VC TE+    + IK+FE +  +++ +S DSV SH  W    +    +
Sbjct: 58  YCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGI 117

Query: 242 G 242
           G
Sbjct: 118 G 118

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G +   +++D  + ++   G+L        G+ L  R +FIIDP   ++   +     
Sbjct: 116 GLGHMNIALLSDLTKQISRDYGVLLEGP----GLAL--RGLFIIDPNGVIKHLSVNDLPV 169

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ +E LR++ + Q  +     +P +W     
Sbjct: 170 GRSVEETLRLVKAFQFVEAHGEVSPANWTPESP 202

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220

 Score = 65.0 bits (159), Expect = 9e-13
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + +LF +P DFT VC TE+        EF    C+V+A+S DS  SH  WI    ++  L
Sbjct: 58  YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGL 117

Query: 242 G 242
           G
Sbjct: 118 G 118

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186

 Score = 64.9 bits (159), Expect = 5e-13
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
           E   K+ Y +I D   +L      +   E    G+    RA F++DP   ++   +    
Sbjct: 86  ETIAKIKYAMIGDPTGALTRNFDNMREDE----GLAD--RATFVVDPQGIIQAIEVTAEG 139

Query: 74  TGRNFDEILRVLDSLQLTDTKK-VATPVDWKVGME-IEVRPGLVSK 117
            GR+  ++LR + + Q          P  WK G   +     LV K
Sbjct: 140 IGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLDLVGK 185

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186

 Score = 62.9 bits (154), Expect = 3e-12
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
           W + F +P+DFT V  TEL  V    +E ++    V ++S D+  +H  W  +
Sbjct: 32  WSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSS 84

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
              G + Y +I D  ++++ Q  +L+       G+    R  FIIDP   ++   +    
Sbjct: 87  PAVGSIEYIMIGDPSQTISRQFDVLNEET----GLAD--RGTFIIDPDGVIQAIEINADG 140

Query: 74  TGRNFDEILRVLDSLQLTDTKK-VATPVDWKVGME-IEVRPGLVSK 117
            GR+   ++  + + Q          P  W+ G E ++    +V K
Sbjct: 141 IGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETLKPSLDIVGK 186

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187

 Score = 62.9 bits (154), Expect = 2e-12
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
           W I+  +P+DF+ VC TEL  V +   E ++   +V ++S D+   H  W + 
Sbjct: 33  WSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHEN 85

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
             +L   P  FT +C  EL ++   + EFE      +A+S     +H  W   
Sbjct: 38  NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQ 90

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 17  GKLPYPIIAD--QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
               +P+++D     +++   G    V  +  G+    R  F++D +  +R + +     
Sbjct: 91  SGFTFPLLSDFWPHGAVSQAYG----VFNEQAGIAN--RGTFVVDRSGIIRFAEMKQPGE 144

Query: 75  GRNFDEILRVLDSLQ 89
            R+       L +L 
Sbjct: 145 VRDQRLWTDALAALT 159

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
                LP+P+++D  R L+   G+L+       G+    R  FI+DP  +++       +
Sbjct: 101 NDLKTLPFPMLSDIKRELSQAAGVLNA-----DGVAD--RVTFIVDPNNEIQFVSATAGS 153

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
            GRN DE+LRVLD+LQ   + ++    +W+ G  
Sbjct: 154 VGRNVDEVLRVLDALQ---SDEL-CASNWRKGDP 183

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W ++F  P DFT VC TE+A   +L  EFE R  +++ +S DS  +H  W
Sbjct: 47  WRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQW 96

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
             +L  +P+ FT VCT E+      + +F Q    V+ +S D   S+  + +
Sbjct: 32  VVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKE 83

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGR 76
           KL + I++D +R +  +  +         G  L  RAVF+ID   K+R  ++    T   
Sbjct: 86  KLNFTILSDYNREVVKKYNVAW-EFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEP 144

Query: 77  NFDEILRVLDSL 88
            +DEI +V+ SL
Sbjct: 145 PYDEIEKVVKSL 156

>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
             +L   P+ F+PVCT EL      + + E+   +V+A+S DS      +  
Sbjct: 35  PAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKD 86

>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 18  KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFL-YPATTGR 76
           +L + +++D +R +     +    E       +  RAVFI+ P   +   ++        
Sbjct: 89  RLAFNLLSDYNREVIKLYNVY--HEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEP 146

Query: 77  NFDEILRVLDSLQ 89
           ++DE++R  + + 
Sbjct: 147 DYDEVVREANKIA 159

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           W +L+ +P D TP  +TE      L+ +FEQ    V+ +S DSV+SH  +  
Sbjct: 53  WLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCA 104

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
           ++ + PS  TPVC TE  +  +++   E     V  +S D   +   + ++
Sbjct: 51  VIITVPSLDTPVCETETKKFNEIMAGMEG--VDVTVVSMDLPFAQKRFCES 99

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGL 243
           +L   PS  T VC   + +  QL  E E     V+ +S D   +   +  A       GL
Sbjct: 82  VLNIFPSIDTGVCAASVRKFNQLAGELEN--TVVLCISSDLPFAQSRFCGA------EGL 133

Query: 244 LINLSVDDFKEVE 256
              +++   +  +
Sbjct: 134 SNVITLSTLRGAD 146

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           W +++ +P D TP  TTE      L+ EF++   K++ +S DSV+SH ++  
Sbjct: 37  WLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCA 88

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           +L+ +P D TP  T E +         +     VI +S D + SH  + +
Sbjct: 33  VLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKE 82

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
           +L   PS  T +C+T+  R  + +   +     V+ +S D   +   W  A
Sbjct: 46  VLSVVPSIDTGICSTQTRRFNEELAGLDN--TVVLTVSMDLPFAQKRWCGA 94

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 9/71 (12%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGL 243
           +L   PS  TPVC T +    +           V+ +S D   +   +  A       G 
Sbjct: 48  LLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDLPFAQKRFCGA------EGT 98

Query: 244 LINLSVDDFKE 254
              +    F++
Sbjct: 99  ENVMPASAFRD 109

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
           +L   PS  T VC T + +  Q   +       V+ +S D   +   +  A
Sbjct: 47  VLNIFPSIDTGVCATSVRKFNQQAAKLSN--TIVLCISADLPFAQARFCGA 95

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
           ++   PS  T VC  +  +      +  +    V+ +S D   +   W  +
Sbjct: 50  LISVVPSIDTGVCDQQTRKFNS---DASKEEGIVLTISADLPFAQKRWCAS 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.97
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.96
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.96
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.96
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.96
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.95
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.94
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.93
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.93
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.93
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.92
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.91
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.91
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.9
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.9
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.89
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.89
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.89
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.88
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.88
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.88
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.88
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.88
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.88
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.88
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.88
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.87
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.87
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.87
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.87
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.87
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.87
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.87
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.87
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.87
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.86
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.86
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.86
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.86
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.86
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.86
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.85
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.85
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.85
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.85
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.84
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.84
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.84
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.83
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.83
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.82
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.82
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.82
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.81
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.81
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.81
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.8
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.8
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.8
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.8
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.79
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.79
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.79
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.79
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.79
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.79
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.78
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.78
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.78
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.78
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.78
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.78
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.77
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.77
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.77
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.77
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.77
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.77
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.77
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.77
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.77
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.77
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.77
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.76
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.76
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.76
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.75
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.75
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.75
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.75
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.75
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.75
3me7_A	170	Putative uncharacterized protein; electron transfe	99.75
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.75
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.74
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.74
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.74
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.74
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.73
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.73
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.72
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.72
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.71
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.71
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.71
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.71
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.7
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.7
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.54
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.69
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.69
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.68
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.68
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.68
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.67
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.66
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.66
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.64
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.64
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.63
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.62
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.41
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.57
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.55
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.55
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.4
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.37
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.35
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	99.34
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.24
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.09
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.04
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.04
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.96
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.94
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.92
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.87
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.86
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	98.86
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.82
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.77
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.76
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.76
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.72
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.71
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.69
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.68
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.67
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.66
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.65
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.64
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.63
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	98.59
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.59
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.58
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.58
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.56
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.53
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.51
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.46
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.44
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	98.44
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.43
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.42
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.4
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.38
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.38
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.38
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.37
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.37
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.37
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.37
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.36
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.35
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.35
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.34
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.33
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.32
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.32
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.31
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.31
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.3
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.29
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.29
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.29
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.28
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.28
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.28
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.28
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.27
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.27
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.27
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.26
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.26
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.25
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.25
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.24
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.24
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.24
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.24
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.24
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.23
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.23
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.22
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.22
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.22
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.21
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.21
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.21
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.21
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.19
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.18
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.18
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.17
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.17
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.17
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.17
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.16
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.16
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.15
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.14
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.14
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.14
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.14
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.13
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.11
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.1
2kuc_A	130	Putative disulphide-isomerase; structural genomics	98.09
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.08
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.08
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.07
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.07
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.02
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.02
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.99
4evm_A	138	Thioredoxin family protein; structural genomics, n	97.98
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	97.21
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.96
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.19
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	97.94
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	97.94
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.9
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	97.89
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	97.89
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	97.89
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.88
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	97.86
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	97.84
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.83
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.81
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	97.79
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.78
3ira_A	173	Conserved protein; methanosarcina mazei,structural	97.76
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	97.76
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	97.75
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.74
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.72
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.72
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.71
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	97.71
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	97.7
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	97.7
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	97.69
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	97.67
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	97.67
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	97.67
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	97.65
3raz_A	151	Thioredoxin-related protein; structural genomics,	97.63
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	97.62
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	97.61
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	97.6
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	97.59
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.58
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	97.58
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.57
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	97.56
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	97.56
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.55
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	97.55
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	97.54
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	97.54
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	97.54
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	97.52
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.52
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.51
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	97.51
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	97.43
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	97.42
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	97.41
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	97.4
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.39
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	97.33
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	97.32
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.32
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	97.3
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	97.3
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	96.4
2lrt_A	152	Uncharacterized protein; structural genomics, thio	97.29
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.29
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.28
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.27
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	97.27
3me7_A	170	Putative uncharacterized protein; electron transfe	97.26
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	97.26
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	97.17
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.11
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.06
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	96.99
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	96.98
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	96.95
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	96.87
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	96.78
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	96.75
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	96.72
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	96.71
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.71
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	96.69
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	96.66
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	96.58
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	96.57
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	96.55
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.41
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.4
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.31
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	96.28
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	96.25
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	96.19
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	96.1
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	95.93
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	95.9
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	95.89
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	95.86
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	95.85
1z6m_A	175	Conserved hypothetical protein; structural genomic	95.78
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	95.71
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	95.68
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.6
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	94.57
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	95.53
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	95.45
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	95.34
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	95.31
2l57_A	126	Uncharacterized protein; structural genomics, unkn	95.15
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	95.08
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	95.05
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	94.88
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	94.78
1ttz_A	87	Conserved hypothetical protein; structural genomic	94.78
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	94.52
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	94.51
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	94.45
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	94.14
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	93.77
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	93.63
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	93.62
2kuc_A	130	Putative disulphide-isomerase; structural genomics	93.59
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	93.53
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	93.29
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	93.26
1kte_A	105	Thioltransferase; redox-active center, electron tr	92.95
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	92.64
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	92.51
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	92.07
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	92.02
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	91.85
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	91.5
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	91.42
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	91.01
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	90.86
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	90.63
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	90.17
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	89.65
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	89.6
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	89.24
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	89.23
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	89.13
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	88.97
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	88.82
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	88.79
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	88.42
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	88.32
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	88.14
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	88.03
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	88.0
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	87.81
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	87.44
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	87.16
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	87.12
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	86.46
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	86.36
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	86.2
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	85.67
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	85.57
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	85.23
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	84.96
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	84.63
3ira_A	173	Conserved protein; methanosarcina mazei,structural	84.56
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	84.52
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	84.07
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	83.61
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	82.64
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	82.57
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	82.33
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	81.02
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	80.97
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	80.89
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	80.62
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	80.54
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	80.11

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-31  Score=230.09  Aligned_cols=110  Identities=29%  Similarity=0.469  Sum_probs=97.4

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|.++++...|    +.+++||||+|++++++++|||+.+..    |+  +.|+||||||+|+||++++|++++|||++|
T Consensus       102 aw~~~~~~~~~----~~~l~fpllsD~~~~vak~YGv~~~~~----g~--~~R~tFiID~~G~Ir~~~v~~~~~grn~dE  171 (216)
T 3sbc_A          102 AWTNIPRKEGG----LGPINIPLLADTNHSLSRDYGVLIEEE----GV--ALRGLFIIDPKGVIRHITINDLPVGRNVDE  171 (216)
T ss_dssp             HHHTSCGGGTC----CCSCSSCEEECTTSHHHHHHTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred             HHHHHHHHhCC----ccCcccceEeCCCCHHHHHcCCeeccC----Cc--eeeEEEEECCCCeEEEEEEcCCCCCCCHHH
Confidence            47777777666    367999999999999999999998764    55  679999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccC
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL  123 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~  123 (276)
                      +||+|+|||++++++++|||||+||+++|+| +  .+++++.|
T Consensus       172 iLr~l~AlQ~~~~~~~~~Pa~W~~G~~~i~p-~--~~~~~~~~  211 (216)
T 3sbc_A          172 ALRLVEAFQWTDKNGTVLPCNWTPGAATIKP-T--VEDSKEYF  211 (216)
T ss_dssp             HHHHHHHHHHHHHHCCBBCTTCCTTSCCBCC-S--TTTHHHHH
T ss_pred             HHHHHHHhhhHhhcCCCcCCCCCCCCceecC-C--HHHHHHHH
Confidence            9999999999999999999999999999864 3  46666654

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.96  E-value=4.3e-30  Score=222.46  Aligned_cols=130  Identities=45%  Similarity=0.725  Sum_probs=112.8

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|+++|++..+    ..+++||+|+|++++++++|||+.+...+..|...+.|++|||||+|+|++++.|+++.|||++|
T Consensus        81 ~~~~~i~~~~~----~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~e  156 (220)
T 1xcc_A           81 KWIEDIKYYGK----LNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHE  156 (220)
T ss_dssp             HHHHHHHHHHT----CSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred             HHHHHHHHHhc----CCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHH
Confidence            48888888732    17799999999999999999998653322224334689999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccC-C---CC-----Cceeeeee
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL-T---CK-----PIFSRIVS  134 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~-~---~~-----~w~~~~~~  134 (276)
                      ++|.|++||.+++++++|||||+||++||++|++++++|+++| +   +.     .||+|..+
T Consensus       157 ll~~i~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (220)
T 1xcc_A          157 ILRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKHFKNEITKVEMPSKKKYLRFVN  219 (220)
T ss_dssp             HHHHHHHHHHHHHSSEEBCTTCCTTSCEEECTTCCGGGHHHHCSSCEEECCCTTCCCCCEEEC
T ss_pred             HHHHHHHHHhhhcCCcccCCCcCcCCceEeCCCCCHHHHHHHhcCCceEeecCCCCceeEecc
Confidence            9999999999999999999999999999999999999999998 4   35     78988764

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.96  E-value=2.1e-30  Score=223.55  Aligned_cols=103  Identities=27%  Similarity=0.496  Sum_probs=74.4

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|.+..+...+    +.+++||||||++++|+++|||+.+..    |+  +.|+||||||+|+||+++.|++.+|||++|
T Consensus       106 ~w~~~~~~~~~----~~~l~fpllsD~~~~va~~yGv~~~~~----g~--~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~E  175 (219)
T 3tue_A          106 QWTLQDRKKGG----LGTMAIPILADKTKNIARSYGVLEESQ----GV--AYRGLFIIDPHGMLRQITVNDMPVGRSVEE  175 (219)
T ss_dssp             HHHHSCGGGTC----CCSCSSCEEECTTSHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred             HHhhhhHHhcC----ccccccccccCcccHHHHHcCCcccCC----Ce--eEEEEEEECCCCeEEEEEEecCCCCCCHHH
Confidence            36655555444    368999999999999999999998754    55  679999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCC
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPG  113 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~  113 (276)
                      +||+|++||++++++++|||||+||+++|+|++
T Consensus       176 vLr~l~aLQ~~~~~~~~~Pa~W~~G~~~i~p~~  208 (219)
T 3tue_A          176 VLRLLEAFQFVEKHGEVCPANWKKGDPGMKPEP  208 (219)
T ss_dssp             HHHHHHHHHHHHHC-------------------
T ss_pred             HHHHHHHhhhHHhcCCCcCCCCCCCCccccCCC
Confidence            999999999999999999999999999998754

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.96  E-value=1.5e-29  Score=219.71  Aligned_cols=131  Identities=55%  Similarity=0.900  Sum_probs=114.6

Q ss_pred             CchhhHHHhcCCCCCC---CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCC
Q psy1172           1 MFLQDIQSYSSCGEGD---GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN   77 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~---~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~   77 (276)
                      +|+++|++..|    +   .+++||+|+|++++++++|||+.+...+..|+..+.|++|||||+|+|++++.|+++.|||
T Consensus        81 ~~~~~i~~~~~----~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~  156 (224)
T 1prx_A           81 AWSKDINAYNS----EEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRN  156 (224)
T ss_dssp             HHHHHHHHHTT----SCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCC
T ss_pred             HHHHHHHHhhC----cccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCC
Confidence            48888888754    2   4699999999999999999998764322234445789999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCC----CCC-----ceeeeeec
Q psy1172          78 FDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLT----CKP-----IFSRIVSL  135 (276)
Q Consensus        78 ~~eilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~----~~~-----w~~~~~~~  135 (276)
                      ++||+|.|++||.+++++++|||||+||++||++|++++++|+++|+    +..     ||+|..++
T Consensus       157 ~~eil~~i~~l~~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (224)
T 1prx_A          157 FDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQ  223 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEBCTTCCTTSCEEECTTSCHHHHHHHCTTCCEECCCTTCCCCCEEECC
T ss_pred             HHHHHHHHHHHHhhccCCcCCCCCCCCCCceEeCCCCCHHHHHHhhccCceeeccCCCCceEEeccC
Confidence            99999999999999999999999999999999999999999999884    567     99988653

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.96  E-value=7.8e-30  Score=222.80  Aligned_cols=130  Identities=56%  Similarity=0.909  Sum_probs=114.2

Q ss_pred             CchhhHHHhcCCCCCCC--CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCH
Q psy1172           1 MFLQDIQSYSSCGEGDG--KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNF   78 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~--~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~   78 (276)
                      +|+++|++..+     .  +++||+|+|++++++++|||+.+...+..|...+.|++|||||+|+|++++.|+++.|||+
T Consensus        79 ~~~~~i~~~~~-----~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~  153 (233)
T 2v2g_A           79 EWSEDVKCLSG-----VKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNF  153 (233)
T ss_dssp             HHHHHHHHHHT-----CCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCH
T ss_pred             HHHHHHHHhhC-----cccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCH
Confidence            48888888655     5  7999999999999999999986532222243447899999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCC---CCC-----ceeeeeec
Q psy1172          79 DEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLT---CKP-----IFSRIVSL  135 (276)
Q Consensus        79 ~eilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~---~~~-----w~~~~~~~  135 (276)
                      +||+|.|++||.+++++++|||||+||++||++|++++++|+++|+   +..     ||+|..++
T Consensus       154 ~eilr~l~~Lq~~~~~~~~~p~~W~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (233)
T 2v2g_A          154 SEILRVIDSLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAKTLFPNMEVKAVPSGKGYLRYTPQ  218 (233)
T ss_dssp             HHHHHHHHHHHHHHHSSEEBCTTCCTTSCEEECTTSCHHHHHHHCTTCEECCCTTCCSCCEEECC
T ss_pred             HHHHHHHHHHHhhccCCccCCCCcCcCCceEeCCCCCHHHHHHhcCCceEeccCCCCceEEEecC
Confidence            9999999999999999999999999999999999999999999874   567     99999765

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.95  E-value=7.4e-28  Score=212.08  Aligned_cols=125  Identities=30%  Similarity=0.496  Sum_probs=114.0

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|++++++..|     .+++||+++|++++++++|||+.+..    |. .+.|++|||||+|+|++++.|+.++|||++|
T Consensus        83 ~w~~~~~~~~~-----~~i~fPil~D~~~~ia~~ygv~~~~~----g~-~~~p~~fIID~dG~I~~~~~~~~~~gr~~~E  152 (249)
T 3a2v_A           83 KWKEWIERHIG-----VRIPFPIIADPQGTVARRLGLLHAES----AT-HTVRGVFIVDARGVIRTMLYYPMELGRLVDE  152 (249)
T ss_dssp             HHHHHHHHHTC-----CCCCSCEEECTTSHHHHHHTCCCTTC----SS-SCCEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred             HHHHHHHHhcC-----CCCceeEEECCchHHHHHhCCccccC----CC-cccceEEEECCCCeEEEEEecCCcccchhHH
Confidence            48899998877     78999999999999999999987654    33 2679999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCC-----CCceeeCCCCCchhhhccCC-----CCCceeeeeech
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKV-----GMEIEVRPGLVSKDSEGKLT-----CKPIFSRIVSLF  136 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~-----g~~~~~~p~~~~~~~~~~~~-----~~~w~~~~~~~~  136 (276)
                      |+|.|++||.+++++++||||| |     |++||++|+++.+||+++|+     +..||+|..++.
T Consensus       153 llr~I~alq~~~~~~~~~Pa~W-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
T 3a2v_A          153 ILRIVKALKLGDSLKRAVPADW-PNNEIIGEGLIVPPPTTEDQARARMESGQYRSLDWWFCWDTPA  217 (249)
T ss_dssp             HHHHHHHHHHHHHHTCBBCTTT-TSBTTTBTCEEECCCCSHHHHHHHHHHTCSEEEETTEEEECCS
T ss_pred             HHHHHHHHHhccccCccCCCCC-CCCCCCCCCeecCCCCCHHHHHHhcccCCCccccceeEeeeCC
Confidence            9999999999999999999999 9     99999999999999988764     678999998764

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.94  E-value=2.8e-27  Score=193.88  Aligned_cols=109  Identities=20%  Similarity=0.225  Sum_probs=94.4

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+++|++||+|+|++.+|+.++|+ +++||++||+|||++|||+|+.|+|.|++++++|+++|+++++||.|+++.+++|
T Consensus         3 ~l~vG~~aPdF~l~~~~G~~~~l~-d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~   81 (157)
T 4g2e_A            3 MVEIGELAPDFELPDTELKKVKLS-ALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAF   81 (157)
T ss_dssp             CCCTTSBCCCCEEEBTTSCEEEGG-GGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHH
T ss_pred             cCCCCCCCcCeEeECCCCCEEeHH-HHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHH
Confidence            467999999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCC
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      ++++      +++||+++|.++.   ++++||+.....+
T Consensus        82 ~~~~------~~~~p~l~D~~~~---v~~~ygv~~~~~~  111 (157)
T 4g2e_A           82 KEHN------KLNFTILSDYNRE---VVKKYNVAWEFPA  111 (157)
T ss_dssp             HHHT------TCCSEEEECTTSH---HHHHTTCEEECTT
T ss_pred             HHHc------CCcEEEEEcCCcH---HHHHcCCcccccc
Confidence            9988      8899999997664   6889998755443

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.1e-26  Score=199.98  Aligned_cols=122  Identities=22%  Similarity=0.210  Sum_probs=106.8

Q ss_pred             ccccccCCCCCcEEe---cCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172         151 IDRFAAALLPGCSLL---GCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES  227 (276)
Q Consensus       151 ~~~~~G~~aPdF~L~---~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~  227 (276)
                      ..+++|++||||+++   |.++++++|+ +|+||++||+|||++|||+|+.|++.|++.+++|+++|++||+||+|++++
T Consensus        21 M~~~VG~~APdF~l~a~~d~~~~~vsLs-d~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~s   99 (216)
T 3sbc_A           21 MVAQVQKQAPTFKKTAVVDGVFDEVSLD-KYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYS   99 (216)
T ss_dssp             -CCCTTSBCCCCCEEEEETTEEEEECGG-GGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHH
T ss_pred             chhhcCCcCCCCCCcceECCCCcEEehH-HhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhh
Confidence            356899999999987   4455789999 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172         228 HHDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV  276 (276)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v  276 (276)
                      |++|.+..+...++ +++||+++|.++.   ++++||++.+..++  +|+||
T Consensus       100 h~aw~~~~~~~~~~~~l~fpllsD~~~~---vak~YGv~~~~~g~~~R~tFi  148 (216)
T 3sbc_A          100 LLAWTNIPRKEGGLGPINIPLLADTNHS---LSRDYGVLIEEEGVALRGLFI  148 (216)
T ss_dssp             HHHHHTSCGGGTCCCSCSSCEEECTTSH---HHHHHTCEETTTTEECEEEEE
T ss_pred             HHHHHHHHHHhCCccCcccceEeCCCCH---HHHHcCCeeccCCceeeEEEE
Confidence            99999888665554 4789999997765   79999999876654  57775

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.93  E-value=2.6e-27  Score=195.74  Aligned_cols=107  Identities=22%  Similarity=0.236  Sum_probs=99.2

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccC--CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSI--PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~--~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      .+++|++||+|+|++.+|+.++|+ ++  +||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|+++.++
T Consensus         4 ml~vG~~aPdF~l~~~~G~~v~Ls-d~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~   82 (164)
T 4gqc_A            4 LVELGEKAPDFTLPNQDFEPVNLY-EVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLK   82 (164)
T ss_dssp             CCCTTSBCCCCEEEBTTSCEEEHH-HHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHH
T ss_pred             cccCCCCCcCcEeECCCCCEEEHH-HHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHH
Confidence            467999999999999999999999 77  899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      +|++++      +++||+++|+++.   ++++||++.+.
T Consensus        83 ~~~~~~------~~~fp~l~D~~~~---v~~~ygv~~~~  112 (164)
T 4gqc_A           83 KFKDEN------RLAFNLLSDYNRE---VIKLYNVYHED  112 (164)
T ss_dssp             HHHHHT------TCCSEEEECTTSH---HHHHTTCEEEE
T ss_pred             HHHHhc------CcccceeecCchH---HHHHcCCcccc
Confidence            999988      8899999997764   68899997543

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.93  E-value=2.9e-26  Score=197.67  Aligned_cols=120  Identities=25%  Similarity=0.359  Sum_probs=105.8

Q ss_pred             ccccCCCCCcE----EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         153 RFAAALLPGCS----LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       153 ~~~G~~aPdF~----L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      ..+|++||+|+    |+|.+|+.++|+ +|+|||+||+|||++|||+|+.|++.|++.+++|+++|++||+||+|+.++|
T Consensus        26 ~~vG~~APdF~~~a~l~d~~g~~vsLs-d~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh  104 (219)
T 3tue_A           26 AKINSPAPSFEEVALMPNGSFKKISLS-SYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAH  104 (219)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGG-GGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             cccCCcCCCCcccccccCCCCcEEehH-HhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhH
Confidence            46999999999    457788899999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV  276 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v  276 (276)
                      ++|.++..++.++ +++||+++|.++.   ++++||++.+..++  +|+||
T Consensus       105 ~~w~~~~~~~~~~~~l~fpllsD~~~~---va~~yGv~~~~~g~~~R~tFi  152 (219)
T 3tue_A          105 LQWTLQDRKKGGLGTMAIPILADKTKN---IARSYGVLEESQGVAYRGLFI  152 (219)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTSH---HHHHTTCEETTTTEECEEEEE
T ss_pred             HHHhhhhHHhcCccccccccccCcccH---HHHHcCCcccCCCeeEEEEEE
Confidence            9999887554333 5789999998765   79999999876655  57775

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.92  E-value=1.4e-25  Score=187.26  Aligned_cols=109  Identities=21%  Similarity=0.301  Sum_probs=98.2

Q ss_pred             cccccccCCCCCcEEe-cCCCCeEEecccCCCCeEEEEEEcCCCCcccH-HHHHHHHHHHHHHHhCCcEEEE-EeCCChH
Q psy1172         150 LIDRFAAALLPGCSLL-GCQASLVILECSIPAFWGILFSHPSDFTPVCT-TELARVLQLIKEFEQRTCKVIA-LSCDSVE  226 (276)
Q Consensus       150 ~~~~~~G~~aPdF~L~-~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~-~el~~l~~~~~~~~~~gv~Vv~-VS~D~~~  226 (276)
                      ...+.+|++||+|+|+ +.+|+.++|++.++||++||+|||++|||+|+ .|+|.|++++++|+++|++||+ ||.|+++
T Consensus        12 ~~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~   91 (173)
T 3mng_A           12 SAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAF   91 (173)
T ss_dssp             -CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred             CCCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence            3455789999999999 99999999993379999999999999999999 5999999999999999999997 9999999


Q ss_pred             HHHHHHHHHHhcccCCee--EEEeeCCcchhhhhhhhcccccc
Q psy1172         227 SHHDWIKALVRDCILGLL--INLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      .+++|++++      +++  ||+++|.++   +++++||+..+
T Consensus        92 ~~~~f~~~~------~~~~~fp~l~D~~~---~va~~yGv~~~  125 (173)
T 3mng_A           92 VTGEWGRAH------KAEGKVRLLADPTG---AFGKETDLLLD  125 (173)
T ss_dssp             HHHHHHHHT------TCTTTCEEEECTTC---HHHHHHTCBCC
T ss_pred             HHHHHHHHh------CCCCceEEEECCCh---HHHHHhCCCcc
Confidence            999999999      666  999999765   47899999866

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.91  E-value=6.1e-25  Score=185.15  Aligned_cols=107  Identities=17%  Similarity=0.242  Sum_probs=98.8

Q ss_pred             cccccCCCCCcEEecC--CC-CeEEeccc-CCCCeEEEEEEcCCCCcccHH-HHHHHHHHHHHHHhCCcE-EEEEeCCCh
Q psy1172         152 DRFAAALLPGCSLLGC--QA-SLVILECS-IPAFWGILFSHPSDFTPVCTT-ELARVLQLIKEFEQRTCK-VIALSCDSV  225 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~--~G-~~v~l~~~-~~gk~vvL~f~pa~~cp~C~~-el~~l~~~~~~~~~~gv~-Vv~VS~D~~  225 (276)
                      .+.+|++||+|+|++.  +| +.++|+ + ++||++||+|||++|||+|+. |+|.|++++++|+++|++ |++||+|++
T Consensus        25 ~l~vG~~aPdf~l~~~~~~G~~~v~L~-d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~  103 (184)
T 3uma_A           25 TIAVGDKLPNATFKEKTADGPVEVTTE-LLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDL  103 (184)
T ss_dssp             CCCTTCBCCCCEEEEEETTEEEEEEHH-HHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCH
T ss_pred             cCCCCCCCCCcEeecccCCCceEEeHH-HHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence            4689999999999998  89 999999 6 899999999999999999999 899999999999999999 999999999


Q ss_pred             HHHHHHHHHHHhcccCCee--EEEeeCCcchhhhhhhhccccccc
Q psy1172         226 ESHHDWIKALVRDCILGLL--INLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      +.+++|++++      +++  ||+++|.++   +++++||+..+.
T Consensus       104 ~~~~~f~~~~------~~~~~fp~l~D~~~---~va~~yGv~~~~  139 (184)
T 3uma_A          104 HVMGAWATHS------GGMGKIHFLSDWNA---AFTKAIGMEIDL  139 (184)
T ss_dssp             HHHHHHHHHH------TCTTTSEEEECTTC---HHHHHTTCEEEE
T ss_pred             HHHHHHHHHh------CCCCceEEEEcCch---HHHHHcCCceec
Confidence            9999999999      777  999999765   478999998654

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.91  E-value=9.9e-25  Score=180.83  Aligned_cols=105  Identities=16%  Similarity=0.254  Sum_probs=96.8

Q ss_pred             ccccCCCCCcEEe-cCCCCeEEecccC-CCCeEEEEEEcCCCCcccHH-HHHHHHHHHHHHHhCCc-EEEEEeCCChHHH
Q psy1172         153 RFAAALLPGCSLL-GCQASLVILECSI-PAFWGILFSHPSDFTPVCTT-ELARVLQLIKEFEQRTC-KVIALSCDSVESH  228 (276)
Q Consensus       153 ~~~G~~aPdF~L~-~~~G~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~-el~~l~~~~~~~~~~gv-~Vv~VS~D~~~~~  228 (276)
                      +.+|+++|+|+|+ +.+|+.++|+ ++ +||++||+|||++|||+|+. |+|.|++++++|+++|+ +||+||+|+++.+
T Consensus         3 l~~G~~aP~f~l~~~~~G~~v~L~-d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~   81 (167)
T 2wfc_A            3 IKEGDKLPAVTVFGATPNDKVNMA-ELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVM   81 (167)
T ss_dssp             CCTTCBCCCCEEESSSTTCEEEHH-HHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHH
T ss_pred             CCCCCcCCCcEeecCCCCcEEeHH-HHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHH
Confidence            5689999999999 9999999999 66 99999999999999999999 99999999999999999 9999999999999


Q ss_pred             HHHHHHHHhcccCCee--EEEeeCCcchhhhhhhhcccccc
Q psy1172         229 HDWIKALVRDCILGLL--INLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ++|++++      +++  ||+++|.++.   ++++||+...
T Consensus        82 ~~~~~~~------~~~~~fp~l~D~~~~---~~~~~gv~~~  113 (167)
T 2wfc_A           82 DAWGKAH------GADDKVQMLADPGGA---FTKAVDMELD  113 (167)
T ss_dssp             HHHHHHT------TCTTTSEEEECTTSH---HHHHTTCEEC
T ss_pred             HHHHHhc------CCCcceEEEECCCCc---HHHHcCCccc
Confidence            9999988      777  9999997654   6889998754

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.90  E-value=5.1e-24  Score=177.40  Aligned_cols=107  Identities=16%  Similarity=0.226  Sum_probs=95.8

Q ss_pred             ccccCCCCCcEEecCCC-CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcE-EEEEeCCChHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQA-SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCK-VIALSCDSVESHHD  230 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G-~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~-Vv~VS~D~~~~~~~  230 (276)
                      .++|++||+|+|++.++ +.++|++.++||++||+|||++|||+|..|++.|++.+++|+++|++ |++||+|+++++++
T Consensus        14 ~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~   93 (171)
T 2xhf_A           14 IKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAA   93 (171)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHH
T ss_pred             ccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHH
Confidence            47999999999995432 89999933699999999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHhcccCCe--eEEEeeCCcchhhhhhhhccccccc
Q psy1172         231 WIKALVRDCILGL--LINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       231 ~~~~~~~~~~~~~--~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |.++.      ++  +|++++|.++   +++++||+..+.
T Consensus        94 w~~~~------~~~~~f~lLSD~~~---~~a~ayGv~~~~  124 (171)
T 2xhf_A           94 WGKTV------DPEHKIRMLADMHG---EFTRALGTELDS  124 (171)
T ss_dssp             HHHHH------CTTCCSEEEECTTS---HHHHHHTCBCCC
T ss_pred             HHHhc------CCCCCeEEEEeCCc---hHHHHhCCceec
Confidence            99998      55  8999999765   479999998764

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.90  E-value=7e-24  Score=174.22  Aligned_cols=105  Identities=19%  Similarity=0.304  Sum_probs=96.1

Q ss_pred             ccccCCCCCcEEe--cCCC--CeEEeccc-CCCCeEEEEEEcCCCCcccH-HHHHHHHHHHHHHHhCCcE-EEEEeCCCh
Q psy1172         153 RFAAALLPGCSLL--GCQA--SLVILECS-IPAFWGILFSHPSDFTPVCT-TELARVLQLIKEFEQRTCK-VIALSCDSV  225 (276)
Q Consensus       153 ~~~G~~aPdF~L~--~~~G--~~v~l~~~-~~gk~vvL~f~pa~~cp~C~-~el~~l~~~~~~~~~~gv~-Vv~VS~D~~  225 (276)
                      +.+|+.+|+|+|+  +.+|  +.++|+ + ++||++||+|||++|||+|+ .|+|.|++++++|+++|++ |++||+|++
T Consensus         4 ~~~G~~aP~f~l~~~~~~G~~~~~~l~-~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~   82 (162)
T 1tp9_A            4 IAVGDVLPDGKLAYFDEQDQLQEVSVH-SLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP   82 (162)
T ss_dssp             CCTTCBCCCCEEEEECTTSCEEEEESH-HHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCH
T ss_pred             CCCCCCCCCeEEEeecCCCCceeEeHH-HHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCH
Confidence            5689999999996  8899  999999 6 89999999999999999999 9999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHhcccCCe--eEEEeeCCcchhhhhhhhcccccc
Q psy1172         226 ESHHDWIKALVRDCILGL--LINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +.+++|.+++      ++  +|++++|.++   +++++||+..+
T Consensus        83 ~~~~~~~~~~------~~~~~~~~l~D~~~---~~~~~~gv~~~  117 (162)
T 1tp9_A           83 FVMKAWAKSY------PENKHVKFLADGSA---TYTHALGLELD  117 (162)
T ss_dssp             HHHHHHHHTC------TTCSSEEEEECTTS---HHHHHTTCEEE
T ss_pred             HHHHHHHHhc------CCCCCeEEEECCCc---hHHHHcCcccc
Confidence            9999999988      66  7999999764   46889999754

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.89  E-value=3.6e-24  Score=178.82  Aligned_cols=115  Identities=23%  Similarity=0.216  Sum_probs=99.3

Q ss_pred             cccCCCCcccccccCC----CCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEE
Q psy1172         143 QFAVPGGLIDRFAAAL----LPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVI  218 (276)
Q Consensus       143 ~~a~~~~~~~~~~G~~----aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv  218 (276)
                      ++++......+.+|+.    +|+|+|++.+|+.++|+ +|+||++||+||+++|||+|+.|++.|++++++|+++|++||
T Consensus        11 ~~~~~~~~~~l~~Gd~ig~~aP~f~l~~~~G~~v~l~-d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv   89 (179)
T 3ixr_A           11 SSGLVPRGSHMNIGDTLNHSLLNHPLMLSGSTCKTLS-DYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVL   89 (179)
T ss_dssp             -------CCSSCTTCBCCHHHHHCCEEEGGGEEECGG-GGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred             ccCcccCCcccCcCcccCCcCCCeeEECCCCCEEeHH-HHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEE
Confidence            3445555556677887    99999999999999999 899999999999999999999999999999999999999999


Q ss_pred             EEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         219 ALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       219 ~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +||.|+++.+++|++++      +++|++++|.+.   +++++||+...
T Consensus        90 ~Vs~D~~~~~~~~~~~~------~~~f~~l~D~~~---~~~~~~gv~~~  129 (179)
T 3ixr_A           90 GVSRDSVKSHDSFCAKQ------GFTFPLVSDSDA---ILCKAFDVIKE  129 (179)
T ss_dssp             EEESCCHHHHHHHHHHH------TCCSCEEECTTC---HHHHHTTCEEE
T ss_pred             EEcCCCHHHHHHHHHHc------CCceEEEECCch---HHHHHcCCccc
Confidence            99999999999999998      889999999665   46888998754

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.89  E-value=1.6e-23  Score=174.90  Aligned_cols=108  Identities=12%  Similarity=0.218  Sum_probs=95.8

Q ss_pred             cccccCCCCCcEEecCCC----------CeEEecccCCCCeEEEEEEcCCCCcccHH-HHHHHHHHHHHHHhCCc-EEEE
Q psy1172         152 DRFAAALLPGCSLLGCQA----------SLVILECSIPAFWGILFSHPSDFTPVCTT-ELARVLQLIKEFEQRTC-KVIA  219 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G----------~~v~l~~~~~gk~vvL~f~pa~~cp~C~~-el~~l~~~~~~~~~~gv-~Vv~  219 (276)
                      ..++|+++|++++....+          ++++|++.++||++||+|||++|||+|+. |++.|++.+++|+++|+ +|++
T Consensus         9 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vig   88 (176)
T 4f82_A            9 MIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWC   88 (176)
T ss_dssp             CCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            468999999999876533          57899833499999999999999999999 99999999999999999 9999


Q ss_pred             EeCCChHHHHHHHHHHHhcccCCee--EEEeeCCcchhhhhhhhccccccc
Q psy1172         220 LSCDSVESHHDWIKALVRDCILGLL--INLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       220 VS~D~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ||+|+++++++|+++.      +++  |++++|.++   +++++||+..+.
T Consensus        89 IS~D~~~~~~~f~~~~------~l~~~f~lLsD~~~---~va~ayGv~~~~  130 (176)
T 4f82_A           89 VSVNDAFVMGAWGRDL------HTAGKVRMMADGSA---AFTHALGLTQDL  130 (176)
T ss_dssp             EESSCHHHHHHHHHHT------TCTTTSEEEECTTC---HHHHHHTCEEEC
T ss_pred             EeCCCHHHHHHHHHHh------CCCCCceEEEcCch---HHHHHhCCCccc
Confidence            9999999999999998      677  999999765   479999998764

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.89  E-value=1.4e-23  Score=176.56  Aligned_cols=106  Identities=13%  Similarity=0.230  Sum_probs=94.3

Q ss_pred             cccCCCCCcEEec--C---------CC----CeEEecccCCCCeEEEEEEcCCCCcccH-HHHHHHHHHHHHH-HhCCcE
Q psy1172         154 FAAALLPGCSLLG--C---------QA----SLVILECSIPAFWGILFSHPSDFTPVCT-TELARVLQLIKEF-EQRTCK  216 (276)
Q Consensus       154 ~~G~~aPdF~L~~--~---------~G----~~v~l~~~~~gk~vvL~f~pa~~cp~C~-~el~~l~~~~~~~-~~~gv~  216 (276)
                      ++|+++|+|+|++  .         +|    +.++|++.++||++||+|||++|||+|. .|++.|++.+++| +++|++
T Consensus         2 ~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~   81 (182)
T 1xiy_A            2 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD   81 (182)
T ss_dssp             CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred             CCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence            5899999999998  4         67    6899984489999999999999999999 9999999999999 999995


Q ss_pred             -EEEEeCCChHHHHHHHHHHHhcccCCe-eEEEeeCCcchhhhhhhhccccccc
Q psy1172         217 -VIALSCDSVESHHDWIKALVRDCILGL-LINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       217 -Vv~VS~D~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                       |++||+|+++++++|.+++      ++ +|++++|.++.   ++++||+..+.
T Consensus        82 ~V~gvS~D~~~~~~~~~~~~------~~~~f~lLsD~~~~---~a~~yGv~~~~  126 (182)
T 1xiy_A           82 DIYCITNNDIYVLKSWFKSM------DIKKIKYISDGNSS---FTDSMNMLVDK  126 (182)
T ss_dssp             EEEEEESSCHHHHHHHHHHT------TCCSSEEEECTTSH---HHHHTTCEEEC
T ss_pred             EEEEEeCCCHHHHHHHHHHc------CCCCceEEEeCchH---HHHHhCCceec
Confidence             9999999999999999988      66 69999997654   79999998654

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.88  E-value=2.6e-23  Score=183.65  Aligned_cols=115  Identities=25%  Similarity=0.258  Sum_probs=100.4

Q ss_pred             cccccCCCCCcEEecC---CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         152 DRFAAALLPGCSLLGC---QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~---~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      .+.+|++||+|+|++.   +|+.++|+ +|+||++||+|||++|||+|..|++.|++++++|+++|++||+||+|+++.+
T Consensus        61 ~l~vG~~aPdF~l~~l~d~~G~~vsLs-d~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~  139 (254)
T 3tjj_A           61 KAKISKPAPYWEGTAVIDGEFKELKLT-DYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTH  139 (254)
T ss_dssp             CCCTTSBCCCCEEEEEETTEEEEEEGG-GGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             ccCCCCCCCCcEeeeecCCCCcEEeHH-HHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHH
Confidence            4579999999998854   56799999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCC
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      ++|++.+.+..++ +++||+++|.++   +++++||+..+..+
T Consensus       140 ~~~~~~~~~~~g~~~~~fp~l~D~~~---~va~~ygv~~~~~g  179 (254)
T 3tjj_A          140 LAWINTPRRQGGLGPIRIPLLSDLTH---QISKDYGVYLEDSG  179 (254)
T ss_dssp             HHHHTSCGGGTSCCSCSSCEEECTTS---HHHHHHTCEETTTT
T ss_pred             HHHHHHHHHhcCCcccccceeeCcHH---HHHHHcCCccccCC
Confidence            9999887665444 578999999764   47899999765433

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.88  E-value=8.7e-23  Score=166.97  Aligned_cols=104  Identities=18%  Similarity=0.109  Sum_probs=96.1

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCe-EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFW-GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~-vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      +.+|+++|+|+|++.+|+.++++ +++||+ +||+|||++|||+|+.+++.|++++++|+++|++||+||+|+++..++|
T Consensus         2 l~~G~~~P~f~l~~~~G~~~~l~-~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~   80 (161)
T 3drn_A            2 VKVGDKAPLFEGIADNGEKISLS-DYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRF   80 (161)
T ss_dssp             CCTTSBCCCCEEEETTSCEEEGG-GTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHH
T ss_pred             CCCCCcCCCeEeecCCCCEEEHH-HhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHH
Confidence            56899999999999999999999 899998 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      .+++      +++|++++|.+.   .+++.||+..
T Consensus        81 ~~~~------~~~~~~~~d~~~---~~~~~~~v~~  106 (161)
T 3drn_A           81 KEKY------KLPFILVSDPDK---KIRELYGAKG  106 (161)
T ss_dssp             HHHT------TCCSEEEECTTS---HHHHHTTCCC
T ss_pred             HHHh------CCCceEEECCcH---HHHHHcCCCC
Confidence            9988      889999999654   4678888864

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.88  E-value=4.7e-23  Score=179.65  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=96.0

Q ss_pred             ccccCCCCCcEEecC-CCC--eEEeccc-CCCCeEEEEEEcCCCCcccH-HHHHHHHHHHHHHHhCCc-EEEEEeCCChH
Q psy1172         153 RFAAALLPGCSLLGC-QAS--LVILECS-IPAFWGILFSHPSDFTPVCT-TELARVLQLIKEFEQRTC-KVIALSCDSVE  226 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~-~G~--~v~l~~~-~~gk~vvL~f~pa~~cp~C~-~el~~l~~~~~~~~~~gv-~Vv~VS~D~~~  226 (276)
                      +.+|+++|+|+|++. +|+  .++|+ + ++||++||+|||++|||+|+ .|+|.|++++++|+++|+ +|++||+|+++
T Consensus         3 ~~~G~~aP~f~l~~~~~g~~~~v~l~-~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~   81 (241)
T 1nm3_A            3 SMEGKKVPQVTFRTRQGDKWVDVTTS-ELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTF   81 (241)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEHH-HHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHH
T ss_pred             ccCCCCCCCeEEEcccCCCceeecHH-HHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHH
Confidence            568999999999997 777  89999 7 89999999999999999999 999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHhcccCCee-EEEeeCCcchhhhhhhhcccccc
Q psy1172         227 SHHDWIKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      .+++|.+++      +++ |++++|.++.   ++++||+...
T Consensus        82 ~~~~~~~~~------~~~~~~~l~D~~~~---~~~~~gv~~~  114 (241)
T 1nm3_A           82 VMNAWKEDE------KSENISFIPDGNGE---FTEGMGMLVG  114 (241)
T ss_dssp             HHHHHHHHT------TCTTSEEEECTTSH---HHHHTTCEEE
T ss_pred             HHHHHHHhc------CCCceEEEECCCcH---HHHHhCceee
Confidence            999999988      676 9999997654   6889999754

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.88  E-value=6.5e-23  Score=167.42  Aligned_cols=105  Identities=25%  Similarity=0.316  Sum_probs=97.4

Q ss_pred             cccccCCCCCcE--EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         152 DRFAAALLPGCS--LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       152 ~~~~G~~aPdF~--L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      .+.+|+++|+|+  |++.+|++++|+ +++||++||+||+++|||+|..+++.|++++++|+++|++||+||+|+++.++
T Consensus         6 ~l~~G~~~P~f~~~l~~~~G~~~~l~-~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~   84 (163)
T 3gkn_A            6 DAVLELPAATFDLPLSLSGGTQTTLR-AHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD   84 (163)
T ss_dssp             CCCCCCCGGGGGCCEECSTTCEECSG-GGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             ccccCCcCCCccccccCCCCCEEEHH-HhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence            367999999999  999999999999 89999999999977999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      +|++++      +++|++++|.+.   +++++||+..
T Consensus        85 ~~~~~~------~~~~~~~~d~~~---~~~~~~~v~~  112 (163)
T 3gkn_A           85 NFCAKQ------GFAFPLVSDGDE---ALCRAFDVIK  112 (163)
T ss_dssp             HHHHHH------CCSSCEEECTTC---HHHHHTTCEE
T ss_pred             HHHHHh------CCCceEEECCcH---HHHHHhCCcc
Confidence            999998      889999999665   4688899875

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.88  E-value=9.6e-23  Score=167.17  Aligned_cols=104  Identities=20%  Similarity=0.134  Sum_probs=94.8

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+.+|+.+|+|+|++.+|+.++|+ +++||++||+||+++|||+|+.|++.|++++++|  +|++||+||.|+++.+++|
T Consensus        15 ~~~~G~~~P~f~l~~~~G~~v~l~-~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~~~~   91 (163)
T 1psq_A           15 QLQVGDKALDFSLTTTDLSKKSLA-DFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQKRW   91 (163)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGG-GGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCCCEEEEcCCCcEeeHH-HhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHHHHH
Confidence            457899999999999999999999 8999999999998899999999999999999999  7999999999999999999


Q ss_pred             HHHHHhcccCCe-eEEEeeC-Ccchhhhhhhhcccccc
Q psy1172         232 IKALVRDCILGL-LINLSVD-DFKEVEGRSRRFQESLN  267 (276)
Q Consensus       232 ~~~~~~~~~~~~-~~~~l~D-~~~~~~~~a~~ygv~~~  267 (276)
                      .+++      ++ +|++++| .++   .++++||+...
T Consensus        92 ~~~~------~~~~~~~l~D~~~~---~~~~~~gv~~~  120 (163)
T 1psq_A           92 CGAE------GLDNAIMLSDYFDH---SFGRDYALLIN  120 (163)
T ss_dssp             HHHH------TCTTSEEEECTTTC---HHHHHHTCBCT
T ss_pred             HHhc------CCCCcEEecCCchh---HHHHHhCCccc
Confidence            9998      77 8999998 544   46888998754

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.88  E-value=1.1e-22  Score=175.93  Aligned_cols=109  Identities=24%  Similarity=0.302  Sum_probs=96.6

Q ss_pred             ccccCCCCCcEEecC--CC--CeEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172         153 RFAAALLPGCSLLGC--QA--SLVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES  227 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~--~G--~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~  227 (276)
                      +.+|+++|+|+|++.  +|  +.++|+ ++ +||++||+|||++|||+|+.|+|.|++++++|+++|++||+||+|+++.
T Consensus        25 l~~G~~aP~F~l~~~~~~G~~~~v~L~-d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~  103 (221)
T 2c0d_A           25 SLVTKKAYNFTAQGLNKNNEIINVDLS-SFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYS  103 (221)
T ss_dssp             -CTTSBCCCCEEEEECTTSCEEEEEGG-GGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCCCCCCeEEeccccCCCccEEeHH-HHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            578999999999999  89  899999 78 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccc
Q psy1172         228 HHDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                      +++|.+++.+..++ +++|++++|.++   +++++||+.
T Consensus       104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~---~~~~~ygv~  139 (221)
T 2c0d_A          104 HLAWKNMPIEKGGIGNVEFTLVSDINK---DISKNYNVL  139 (221)
T ss_dssp             HHHHHHSCGGGTCCCSCSSEEEECTTS---HHHHHTTCE
T ss_pred             HHHHHHHhhhhcCccCCceEEEECCch---HHHHHcCCc
Confidence            99998887544333 468999999654   468889986

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.88  E-value=3.7e-23  Score=180.45  Aligned_cols=110  Identities=31%  Similarity=0.498  Sum_probs=97.9

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      +.+|+.+|+|++++.+| .++|+ +++|+ ++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+.+++++|
T Consensus         3 l~iG~~aPdF~l~~~~G-~v~l~-d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~   80 (233)
T 2v2g_A            3 ITLGEVFPNFEADSTIG-KLKFH-DWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEW   80 (233)
T ss_dssp             CCTTCBCCCCEEEETTC-CEEHH-HHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCCcEEecCCC-CEEHH-HHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHH
Confidence            56899999999999999 89998 88887 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccC--CeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         232 IKALVRDCIL--GLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       232 ~~~~~~~~~~--~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      .+...+..+.  +++||+++|.++   +++++||+...
T Consensus        81 ~~~i~~~~~~~~~~~fpil~D~~~---~va~~ygv~~~  115 (233)
T 2v2g_A           81 SEDVKCLSGVKGDMPYPIIADETR---ELAVKLGMVDP  115 (233)
T ss_dssp             HHHHHHHHTCCSSCSSCEEECTTC---HHHHHTTCEEE
T ss_pred             HHHHHHhhCcccCCceEEEECChH---HHHHHhCCcCc
Confidence            9977654334  568999999655   46889998743

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.88  E-value=5.9e-23  Score=167.51  Aligned_cols=106  Identities=21%  Similarity=0.194  Sum_probs=96.2

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCC--eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAF--WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk--~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      .+.+|+.+|+|+|++.+|+.++|+ +++||  ++||+||+++|||+|+.++|.|++++++|+++| +||+||.|+++.++
T Consensus         6 ~~~~G~~~P~f~l~~~~G~~v~l~-~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~   83 (159)
T 2a4v_A            6 ELEIGDPIPDLSLLNEDNDSISLK-KITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQK   83 (159)
T ss_dssp             CCCTTCBCCSCEEECTTSCEEEHH-HHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHH
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHH-HHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHH
Confidence            457899999999999999999999 88887  899999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      +|.+++      +++|++++|.++   +++++||+...+
T Consensus        84 ~~~~~~------~~~~~~l~D~~~---~~~~~~gv~~~p  113 (159)
T 2a4v_A           84 KFQSKQ------NLPYHLLSDPKR---EFIGLLGAKKTP  113 (159)
T ss_dssp             HHHHHH------TCSSEEEECTTC---HHHHHHTCBSSS
T ss_pred             HHHHHh------CCCceEEECCcc---HHHHHhCCcccc
Confidence            999988      789999999654   468889987654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.87  E-value=9.8e-23  Score=167.59  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=93.3

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI  232 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~  232 (276)
                      +.+|+.+|+|+|++.+|+.++|+ +++||++||+||+++|||+|+.|++.|++++++|  +|++||+||.|+++.+++|+
T Consensus        17 ~~~G~~~P~f~l~~~~G~~v~l~-~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~~   93 (165)
T 1q98_A           17 PQVGEIVENFILVGNDLADVALN-DFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQARFC   93 (165)
T ss_dssp             CCTTCBCCCCEEECTTSCEEEGG-GGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHHTTCT
T ss_pred             CCCCCCCCCeEEECCCCCEEehH-HhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHHHHHH
Confidence            56899999999999999999999 8999999999999999999999999999999999  89999999999999888888


Q ss_pred             HHHHhcccCCe-eEEEeeCC-cchhhhhhhhcccccc
Q psy1172         233 KALVRDCILGL-LINLSVDD-FKEVEGRSRRFQESLN  267 (276)
Q Consensus       233 ~~~~~~~~~~~-~~~~l~D~-~~~~~~~a~~ygv~~~  267 (276)
                      +++      ++ +|++++|. ++   .++++||+...
T Consensus        94 ~~~------~~~~~~~l~D~~~~---~~~~~~gv~~~  121 (165)
T 1q98_A           94 GAE------GIENAKTVSTFRNH---ALHSQLGVDIQ  121 (165)
T ss_dssp             TTT------TCTTEEEEECTTCT---HHHHHTTCEEC
T ss_pred             HHc------CCCceEEeeccccc---hHHHHhCceec
Confidence            777      77 79999986 33   46888998753

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.87  E-value=9.3e-23  Score=169.41  Aligned_cols=107  Identities=15%  Similarity=0.218  Sum_probs=92.2

Q ss_pred             cccccCCCCCcEEecC----CC-----CeEEecccC-CCCeEEEEEEcCCCCcccHHH-HHHHHHHHHHHHhCCcE-EEE
Q psy1172         152 DRFAAALLPGCSLLGC----QA-----SLVILECSI-PAFWGILFSHPSDFTPVCTTE-LARVLQLIKEFEQRTCK-VIA  219 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~----~G-----~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~e-l~~l~~~~~~~~~~gv~-Vv~  219 (276)
                      +..+|+++|+|+|++.    +|     +.++|+ ++ +||++||+|||++|||+|+.| +|.|++++++|+++|++ |++
T Consensus         6 g~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~-~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~   84 (171)
T 2pwj_A            6 GTDILSAASNVSLQKARTWDEGVESKFSTTPVN-DIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVIC   84 (171)
T ss_dssp             ----CCCSSSBCCCSCEECCCSSCTTCCCEEHH-HHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEE
T ss_pred             cccccCcCCCeEEecccccccCCccCcceEEHH-HHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence            4457889999999998    57     899999 75 999888888889999999999 99999999999999999 999


Q ss_pred             EeCCChHHHHHHHHHHHhcccCCe--eEEEeeCCcchhhhhhhhccccccc
Q psy1172         220 LSCDSVESHHDWIKALVRDCILGL--LINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       220 VS~D~~~~~~~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ||+|+++.+++|.+++      ++  +||+++|.++.   ++++||+....
T Consensus        85 Is~d~~~~~~~~~~~~------~~~~~fp~l~D~~~~---~~~~ygv~~~~  126 (171)
T 2pwj_A           85 VAINDPYTVNAWAEKI------QAKDAIEFYGDFDGS---FHKSLELTTDL  126 (171)
T ss_dssp             EESSCHHHHHHHHHHT------TCTTTSEEEECTTCH---HHHHHTCEEEC
T ss_pred             EeCCCHHHHHHHHHHh------CCCCceEEEECCccH---HHHHhCCcccc
Confidence            9999999999999988      54  79999997654   68899998653

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.87  E-value=6.5e-23  Score=176.00  Aligned_cols=112  Identities=26%  Similarity=0.266  Sum_probs=96.7

Q ss_pred             cccccCCCCCcEEecC---CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         152 DRFAAALLPGCSLLGC---QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~---~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      .+.+|+++|+|+|++.   +|+.++|+ +++||++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+++.+
T Consensus        18 ~~~~G~~aP~f~l~~~~~~~g~~v~l~-d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~   96 (211)
T 2pn8_A           18 LYFQSMPAPYWEGTAVIDGEFKELKLT-DYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTH   96 (211)
T ss_dssp             -CCSSCBCCCCEEEEEETTEEEEEEGG-GGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             cCCCCCcCCCeEeecccCCCCcEEEHH-HhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            4568999999999985   45899999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ++|++++.+..++ +++|++++|.++   +++++||+..+
T Consensus        97 ~~~~~~~~~~~g~~~~~fp~l~D~~~---~~~~~ygv~~~  133 (211)
T 2pn8_A           97 LAWINTPRRQGGLGPIRIPLLSDLTH---QISKDYGVYLE  133 (211)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTS---HHHHHTTCEET
T ss_pred             HHHHHHhhhccCccCCceEEEECCch---HHHHHcCCccc
Confidence            9998877544333 468999999654   46889998643

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.87  E-value=1.5e-22  Score=166.46  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=95.0

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+.+|+++|+|+|++.+|+.++|+ +++||++||+||+++|||+|+.|++.|++++++   +|++||+||.|+++.+++|
T Consensus        19 ~l~~G~~aP~f~l~~~~G~~~~l~-~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d~~~~~~~~   94 (166)
T 3p7x_A           19 QINEGDFAPDFTVLDNDLNQVTLA-DYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISADLPFAQKRW   94 (166)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGG-GGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESSCHHHHHHH
T ss_pred             cCCCCCCCCCeEEEcCCCCEEeHH-HhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECCCHHHHHHH
Confidence            456899999999999999999999 899999999999999999999999999999988   8899999999999999999


Q ss_pred             HHHHHhcccCCe-eEEEeeCC-cchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGL-LINLSVDD-FKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~-~~~~l~D~-~~~~~~~a~~ygv~~~~  268 (276)
                      ++++      ++ +|++++|. +.   +++++||+....
T Consensus        95 ~~~~------~~~~~~~l~D~~~~---~~~~~~gv~~~~  124 (166)
T 3p7x_A           95 CASA------GLDNVITLSDHRDL---SFGENYGVVMEE  124 (166)
T ss_dssp             HHHH------TCSSCEEEECTTTC---HHHHHHTCEETT
T ss_pred             HHHc------CCCceEEccCCchh---HHHHHhCCcccc
Confidence            9998      88 79999997 54   468899998643

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.87  E-value=1.9e-22  Score=174.79  Aligned_cols=111  Identities=34%  Similarity=0.456  Sum_probs=97.6

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      .+.+|+.+|+|++++.+| .++|+ +++|+ ++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+.+++++
T Consensus         4 ~l~~G~~aP~F~l~~~~G-~v~l~-d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~   81 (224)
T 1prx_A            4 GLLLGDVAPNFEANTTVG-RIRFH-DFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLA   81 (224)
T ss_dssp             -CCTTCBCCCCEEEETTE-EEEHH-HHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             cCCCcCCCCCcEEecCCC-CEEHH-HHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence            356899999999999999 99998 88887 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccc----CCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         231 WIKALVRDCI----LGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       231 ~~~~~~~~~~----~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      |.+...+..+    .+++||+++|.++   +++++||+...
T Consensus        82 ~~~~i~~~~~~~~~~~~~fpil~D~~~---~va~~ygv~~~  119 (224)
T 1prx_A           82 WSKDINAYNSEEPTEKLPFPIIDDRNR---ELAILLGMLDP  119 (224)
T ss_dssp             HHHHHHHHTTSCCCSCCSSCEEECTTC---HHHHHTTSSCS
T ss_pred             HHHHHHHhhCcccccCcCcceeecCch---HHHHHhCCCCc
Confidence            9998655433    3778999999655   46889998753

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.87  E-value=2.1e-22  Score=176.31  Aligned_cols=115  Identities=24%  Similarity=0.256  Sum_probs=99.6

Q ss_pred             cccccCCCCCcEEecC-C--CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         152 DRFAAALLPGCSLLGC-Q--ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~-~--G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      .+.+|+++|+|+|++. +  |++++|+ +|+||++||+||+++|||+|+.|++.|++++++|+++|++||+||+|+++.+
T Consensus        47 ~l~vG~~aPdF~l~~~~d~~G~~vsLs-d~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~  125 (240)
T 3qpm_A           47 KAKISKPAPQWEGTAVINGEFKELKLS-DYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTH  125 (240)
T ss_dssp             SCCTTSBCCCCEEEEEETTEEEEEEGG-GGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHH
T ss_pred             cCCCCCCCCCcEeeeeeCCCCcEEEHH-HhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            3569999999998864 4  5699999 8999999999998899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCC
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      ++|++.+.+..++ +++||+++|.++   +++++||+..+..+
T Consensus       126 ~~~~~~~~~~~~~~~~~fp~l~D~~~---~v~~~ygv~~~~~g  165 (240)
T 3qpm_A          126 LAWIITPRKQGGLGPMKIPLLSDLTH---QISKDYGVYLEDQG  165 (240)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTS---HHHHHTTCEETTTT
T ss_pred             HHHHHHHHhhcCCCCCceeEEeCchH---HHHHHhCCccccCC
Confidence            9999887655443 568999999764   47899999865443

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.87  E-value=2.4e-22  Score=168.81  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=94.3

Q ss_pred             cccCCCCCcEEecC-CC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         154 FAAALLPGCSLLGC-QA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       154 ~~G~~aPdF~L~~~-~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      .+|+++|+|+|++. +|  +.++|+ +++||++||+||+++|||+|+.|++.|++++++|+++|++||+||+|+++.+++
T Consensus         2 ~~G~~aP~f~l~~~~~G~~~~v~l~-~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~   80 (186)
T 1n8j_A            2 LINTKIKPFKNQAFKNGEFIEVTEK-DTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA   80 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHH-HHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred             CCCCcCCCcEeecccCCcceEEEHH-HHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Confidence            47999999999999 58  899999 899999999999889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      |++++..-.  +++|++++|.++   +++++||+...
T Consensus        81 ~~~~~~~~~--~~~fp~l~D~~~---~~~~~ygv~~~  112 (186)
T 1n8j_A           81 WHSSSETIA--KIKYAMIGDPTG---ALTRNFDNMRE  112 (186)
T ss_dssp             HHHHCTTGG--GCCSEEEECTTS---HHHHHTTCEET
T ss_pred             HHHHcCccc--CCceeEEECCch---HHHHHhCCccC
Confidence            988762111  357999999654   46888998754

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.87  E-value=1.7e-22  Score=171.95  Aligned_cols=105  Identities=19%  Similarity=0.115  Sum_probs=95.5

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+.+|+++|+|+|++.+|+.++|+ +++||++||+||+++|||+|+.|++.|++++++|  +|++||+||.|+++.+++|
T Consensus        51 ~l~~G~~aPdf~l~d~~G~~v~L~-d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~~~~~~~  127 (200)
T 3zrd_A           51 LPQIGDKAKDFTLVAKDLSDVALS-SFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLPFAQSRF  127 (200)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGG-GGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHHTTC
T ss_pred             cCCCCCCCCCeEEECCCCCEEcHH-HhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCHHHHHHH
Confidence            356899999999999999999999 8999999999999999999999999999999999  7899999999999998888


Q ss_pred             HHHHHhcccCCe-eEEEeeCC-cchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGL-LINLSVDD-FKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~-~~~~l~D~-~~~~~~~a~~ygv~~~~  268 (276)
                      ++++      ++ +|++++|. ++   +++++||+....
T Consensus       128 ~~~~------~~~~f~~l~D~~~~---~~~~~ygv~~~~  157 (200)
T 3zrd_A          128 CGAE------GLSNVITLSTLRGA---DFKQAYGVAITE  157 (200)
T ss_dssp             TTTT------TCTTEEEEETTSCT---HHHHHTTCEECS
T ss_pred             HHHc------CCCCceEEecCchH---HHHHHhCceeec
Confidence            8887      88 89999997 44   468899998654

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.87  E-value=3e-22  Score=172.12  Aligned_cols=116  Identities=20%  Similarity=0.238  Sum_probs=98.9

Q ss_pred             CCCcccccccCCCCCcEEecC--CC--CeEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172         147 PGGLIDRFAAALLPGCSLLGC--QA--SLVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS  221 (276)
Q Consensus       147 ~~~~~~~~~G~~aPdF~L~~~--~G--~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS  221 (276)
                      ......+.+|+++|+|+|++.  +|  +.++|+ ++ +||++||+|||++|||+|..+++.|++++++|+++|++||+||
T Consensus        15 ~~~~~~l~~G~~aP~f~l~~~~~~G~~~~v~l~-d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is   93 (213)
T 2i81_A           15 VPRGSPTYVGKEAPFFKAEAVFGDNSFGEVNLT-QFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCS   93 (213)
T ss_dssp             -----CCCBTSBCCCCEEEEECTTSCEEEEEGG-GGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEE
T ss_pred             cCCCccccCCCcCCCeEeeccccCCceeEEeHH-HHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            334446689999999999999  89  899999 78 9999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhccccc
Q psy1172         222 CDSVESHHDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       222 ~D~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      +|+++.+++|.+.+.+..++ +++||+++|.+.   +++++||+..
T Consensus        94 ~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~---~~~~~ygv~~  136 (213)
T 2i81_A           94 VDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITK---SISKDYNVLF  136 (213)
T ss_dssp             SSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTS---HHHHHTTCEE
T ss_pred             CCCHHHHHHHHHHHHhhCCccCCCceEEECCch---HHHHHhCCcc
Confidence            99999999998877554444 468999999654   4688899874

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.86  E-value=5.3e-22  Score=171.79  Aligned_cols=102  Identities=21%  Similarity=0.104  Sum_probs=92.6

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccH-----HHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCT-----TELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~-----~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .+.+|++||+|+|++.+|+.++|+ +|+||++||+|||+.|||+|+     .|++.|++.   |  +|++||+||+|+++
T Consensus        21 ~l~vG~~APdFtL~d~~G~~vsLs-d~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~Ds~~   94 (224)
T 3keb_A           21 FPRKGDYLPSFMLVDDQKHDAALE-SFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVDSPS   94 (224)
T ss_dssp             CCCTTCBCCCCEEEETTSCEEEGG-GGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESSCHH
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHH-HhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECCCHH
Confidence            356899999999999999999999 799999999999999999999     999999987   4  78999999999999


Q ss_pred             HHHHHHHHHHhcccCCe-eEEEeeCC-cchhhhhhhhccccccc
Q psy1172         227 SHHDWIKALVRDCILGL-LINLSVDD-FKEVEGRSRRFQESLNT  268 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~l~D~-~~~~~~~a~~ygv~~~~  268 (276)
                      .+++|++++      ++ +|++++|. ++   +++++||+..+.
T Consensus        95 ~~~~f~~~~------gl~~fplLsD~~~~---~vak~yGv~~~~  129 (224)
T 3keb_A           95 SLARARHEH------GLPNIALLSTLRGR---DFHKRYGVLITE  129 (224)
T ss_dssp             HHHHHHHHH------CCTTCEEEESTTCT---THHHHTTCBCCS
T ss_pred             HHHHHHHHc------CCCCceEEEcCCch---HHHHHhCCcccc
Confidence            999999999      77 69999997 34   478999998754

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.86  E-value=3.5e-22  Score=175.83  Aligned_cols=113  Identities=27%  Similarity=0.417  Sum_probs=100.7

Q ss_pred             cccccCCCCCcEEecCCCCeEEe-cccC--CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVIL-ECSI--PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l-~~~~--~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      .+.+|+++|+|++++.+| .++| + ++  +||++||+|||++|||+|..|++.|++++++|+++|++||+||+|+.+++
T Consensus         4 ~~~iG~~aPdF~l~~~~G-~v~l~~-d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~   81 (249)
T 3a2v_A            4 IPLIGERFPEMEVTTDHG-VIKLPD-HYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSH   81 (249)
T ss_dssp             ECCTTSBCCCEEEEETTE-EEEETH-HHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             cCCCCCCCCCeEEEcCCC-CEecHH-HHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHH
Confidence            357899999999999999 7999 8 78  99999999989999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         229 HDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      .+|.+...+..+.+++||+++|.++.   ++++||+..+..
T Consensus        82 ~~w~~~~~~~~~~~i~fPil~D~~~~---ia~~ygv~~~~~  119 (249)
T 3a2v_A           82 IKWKEWIERHIGVRIPFPIIADPQGT---VARRLGLLHAES  119 (249)
T ss_dssp             HHHHHHHHHHTCCCCCSCEEECTTSH---HHHHHTCCCTTC
T ss_pred             HHHHHHHHHhcCCCCceeEEECCchH---HHHHhCCccccC
Confidence            99999887655567899999996554   688999986543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.86  E-value=8.2e-22  Score=162.69  Aligned_cols=104  Identities=13%  Similarity=0.249  Sum_probs=94.0

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+.+|+++|+|+|++.+|+.++++ +++||++||+||+++|||+|+.+++.|++++++|  ++++||+||.|+++.+++|
T Consensus        20 ~l~~g~~~P~f~l~~~~G~~~~l~-~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~   96 (171)
T 2yzh_A           20 ELKVGDRAPEAVVVTKDLQEKIVG-GAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQKRF   96 (171)
T ss_dssp             CCCTTSBCCCEEEEETTSCEEEES-SCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred             cCCCCCcCCceEEECCCCCEeeHH-HhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHHHHH
Confidence            356899999999999999999999 8999999999999999999999999999999999  8999999999999999999


Q ss_pred             HHHHHhcccCCe-eEEEeeC-Ccchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGL-LINLSVD-DFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~-~~~~l~D-~~~~~~~~a~~ygv~~~~  268 (276)
                      .+++      ++ +|++++| .+..   + ++||+....
T Consensus        97 ~~~~------~~~~~~~l~D~~~~~---~-~~~gv~~~~  125 (171)
T 2yzh_A           97 CESF------NIQNVTVASDFRYRD---M-EKYGVLIGE  125 (171)
T ss_dssp             HHHT------TCCSSEEEECTTTCG---G-GGGTCBBCS
T ss_pred             HHHc------CCCCeEEeecCccCc---H-HHhCCEecc
Confidence            9988      77 8999998 5443   6 789987543

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.86  E-value=3.8e-22  Score=181.92  Aligned_cols=106  Identities=21%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHH
Q psy1172         157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALV  236 (276)
Q Consensus       157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~  236 (276)
                      .++|+|+|++.+|++++|+ +|+||+|||+|||++|||+|+.|++.|++    ...+|++|+|||+|+++++++|++++ 
T Consensus         2 ak~p~F~l~~~~G~~~~Ls-d~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~~~v~gis~D~~~~~~~f~~~~-   75 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHV-DLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFEKAQVVGISRDSVEALKRFKEKN-   75 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGG-GTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCTTEEEEEEESCCHHHHHHHHHHH-
T ss_pred             CCCCCcEEECCCcCEEeHH-HhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhCCCEEEEEeCCCHHHHHHHHHhh-
Confidence            4689999999999999999 89999999999999999999999999865    23468999999999999999999999 


Q ss_pred             hcccCCeeEEEeeCCcchhhhhhhhcccccccCCcccccC
Q psy1172         237 RDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYLGTYV  276 (276)
Q Consensus       237 ~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~lg~~v  276 (276)
                           +++||+++|.++.   ++++||+......+.+|||
T Consensus        76 -----~l~fp~l~D~~~~---v~~~ygv~~~~~~~r~tfi  107 (322)
T 4eo3_A           76 -----DLKVTLLSDPEGI---LHEFFNVLENGKTVRSTFL  107 (322)
T ss_dssp             -----TCCSEEEECTTCH---HHHHTTCEETTEECCEEEE
T ss_pred             -----CCceEEEEcCchH---HHHhcCCCCCCcCccEEEE
Confidence                 8899999997664   7899999866555566664

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.86  E-value=3.1e-22  Score=173.05  Aligned_cols=110  Identities=32%  Similarity=0.522  Sum_probs=96.5

Q ss_pred             ccccCCCCCcEEecC--CCCeEEecccCCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         153 RFAAALLPGCSLLGC--QASLVILECSIPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~--~G~~v~l~~~~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      +.+|+.+|+|++++.  +| .++|+ +|+|| ++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+.++++
T Consensus         3 l~iG~~aP~F~l~~~~~~G-~v~l~-d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~   80 (220)
T 1xcc_A            3 YHLGATFPNFTAKASGIDG-DFELY-KYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHD   80 (220)
T ss_dssp             CCTTCBCCCCEECBTTCSS-CEEHH-HHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             CCCCCCCCCcEeecccCCC-cEeHH-HHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence            568999999999999  89 89998 89998 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-ccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         230 DWIKALVRD-CILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       230 ~~~~~~~~~-~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +|.+...+. .+.+++||+++|.++   +++++||+..+
T Consensus        81 ~~~~~i~~~~~~~~~~fpil~D~~~---~va~~ygv~~~  116 (220)
T 1xcc_A           81 KWIEDIKYYGKLNKWEIPIVCDESR---ELANKLKIMDE  116 (220)
T ss_dssp             HHHHHHHHHHTCSCCCCCEEECTTS---HHHHHHTCEEE
T ss_pred             HHHHHHHHHhcCCCCcceeEECchh---HHHHHhCCCCc
Confidence            999876532 123778999999655   46889998743

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.86  E-value=7.5e-22  Score=167.58  Aligned_cols=112  Identities=28%  Similarity=0.339  Sum_probs=98.5

Q ss_pred             cccccCCCCCcEEecC--CC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172         152 DRFAAALLPGCSLLGC--QA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES  227 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~--~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~  227 (276)
                      .+.+|+++|+|+|++.  +|  +.++|+ +++||++||+|||++|||+|..+++.|++++++|+++|++||+||+|+++.
T Consensus         5 ~~~~G~~aP~f~l~~~~~~g~~~~v~l~-~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~   83 (202)
T 1uul_A            5 EAEDLHPAPDFNETALMPNGTFKKVALT-SYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYS   83 (202)
T ss_dssp             CCCTTSBCCCCEEEEECTTSCEEEEEGG-GGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             cccCCCcCCCcEeeeeecCCCccEEEHH-HhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            4578999999999998  78  899999 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         228 HHDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +++|.+++.+..++ +++|++++|.+.   ++++.||+...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~p~l~D~~~---~~~~~ygv~~~  121 (202)
T 1uul_A           84 HLAWTSIERKRGGLGQMNIPILADKTK---CIMKSYGVLKE  121 (202)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTTC---HHHHHHTCEET
T ss_pred             HHHHHHHHHhhCCCCCCceeEEECCch---HHHHHcCCccC
Confidence            99999887554444 568999999654   46888998743

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.85  E-value=1.2e-21  Score=159.11  Aligned_cols=104  Identities=23%  Similarity=0.286  Sum_probs=95.3

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      +.+|+.+|+|+|++.+|+.++++ +++|| ++||+||+++|||+|..+++.|++++++|++++++|++||+|+++.+++|
T Consensus         9 ~~~G~~~p~f~l~~~~G~~~~l~-~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~   87 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQNQQLVTLR-GYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIW   87 (160)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGG-GGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHH
T ss_pred             CCCCCCCCCeEeEcCCCCEEeHH-HhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHH
Confidence            67999999999999999999999 89998 99999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHhcccCCeeEEEeeCC--cchhhhhhhhccccc
Q psy1172         232 IKALVRDCILGLLINLSVDD--FKEVEGRSRRFQESL  266 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~--~~~~~~~a~~ygv~~  266 (276)
                      .+++      +++|++++|.  +.   .+++.||+..
T Consensus        88 ~~~~------~~~~~~~~d~~~~~---~~~~~~~v~~  115 (160)
T 1xvw_A           88 ATQS------GFTFPLLSDFWPHG---AVSQAYGVFN  115 (160)
T ss_dssp             HHHH------TCCSCEEECTTTTT---HHHHHTTCEE
T ss_pred             HHhc------CCCceEEecCCcCh---HHHHHcCCcc
Confidence            9998      7789999884  33   4678898873

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.85  E-value=1.6e-21  Score=163.99  Aligned_cols=109  Identities=21%  Similarity=0.290  Sum_probs=96.2

Q ss_pred             cccCCCCCcEEecC--CC--CeEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         154 FAAALLPGCSLLGC--QA--SLVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       154 ~~G~~aPdF~L~~~--~G--~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      ++|+++|+|+|++.  +|  +.++|+ ++ +||++||+|||++|||+|..+++.|++++++|+++|++||+||+|+++.+
T Consensus         1 ~~G~~aP~f~l~~~~~~G~~~~~~l~-~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~   79 (192)
T 2h01_A            1 AFQGQAPSFKAEAVFGDNTFGEVSLS-DFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTH   79 (192)
T ss_dssp             CCSSBCCCCEEEEECTTSCEEEEEGG-GGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCCcCCCcEeEeeecCCceeEEeHH-HHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHH
Confidence            37999999999999  99  899999 77 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhccccc
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      ++|.+.+.++.++ +++|++++|.+.   .++++||+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~D~~~---~~~~~~gv~~  115 (192)
T 2h01_A           80 LAWKKTPLSQGGIGNIKHTLISDISK---SIARSYDVLF  115 (192)
T ss_dssp             HHHHTSCGGGTCCCSCSSEEEECTTS---HHHHHTTCEE
T ss_pred             HHHHHhHHhhCCccCCCcCeEECCcH---HHHHHhCCcC
Confidence            9998877544333 468999999654   4688899873

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.85  E-value=3.6e-21  Score=166.05  Aligned_cols=112  Identities=29%  Similarity=0.327  Sum_probs=97.4

Q ss_pred             cccccCCCCCcEEec---CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         152 DRFAAALLPGCSLLG---CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~---~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      .+.+|+++|+|+|++   .+|+.++|+ +++||++||+|||++|||+|..+++.|++++++|+++|++||+||+|+.+.+
T Consensus        26 ~l~~G~~aP~f~l~~~~~~~g~~v~l~-d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~  104 (220)
T 1zye_A           26 APAVTQHAPYFKGTAVVSGEFKEISLD-DFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSH  104 (220)
T ss_dssp             -CCTTSBCCCCEEEEECSSSEEEEEGG-GGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred             cccCCCCCCCcEEEeeeCCCCcEEEHH-HhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence            457899999999985   467899999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ++|.+.+.+..++ +++|++++|.+.   +++++||+..+
T Consensus       105 ~~~~~~~~~~~g~~~~~fp~l~D~~~---~i~~~ygv~~~  141 (220)
T 1zye_A          105 LAWINTPRKNGGLGHMNIALLSDLTK---QISRDYGVLLE  141 (220)
T ss_dssp             HHHHTSCGGGTCCCSCSSEEEECTTS---HHHHHTTCEET
T ss_pred             HHHHHHHHHhCCCcCCceEEEECCcH---HHHHHhCCeec
Confidence            9999887555443 568999999654   46888998743

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.84  E-value=2.4e-21  Score=154.74  Aligned_cols=110  Identities=7%  Similarity=0.041  Sum_probs=91.1

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHD  230 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~  230 (276)
                      .+.+|+.+|+|++ +.+|+.++|+ +++||++||+|| ++||++|..++|.|++++++|++++++||+||+| +.+..++
T Consensus         6 ~l~~G~~~P~f~l-~~~g~~~~l~-~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~   82 (143)
T 4fo5_A            6 GVNPGDLAPRIEF-LGNDAKASFH-NQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTE   82 (143)
T ss_dssp             SSSTTSBCCCCCC------CCCSC-CSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHH
T ss_pred             ccCCcccCCceEE-cCCCCEEEHH-HhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHH
Confidence            4579999999999 8999999999 899999999999 9999999999999999999999899999999999 5567777


Q ss_pred             HHHHHHhcccCCeeE-EEeeCCcchhhhhhhhcccccccCC
Q psy1172         231 WIKALVRDCILGLLI-NLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~-~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      +.+++      +++| ++++|..+....+++.||+..-++-
T Consensus        83 ~~~~~------~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~  117 (143)
T 4fo5_A           83 TVKID------KLDLSTQFHEGLGKESELYKKYDLRKGFKN  117 (143)
T ss_dssp             HHHHH------TCCGGGEEECTTGGGSHHHHHTTGGGCCCE
T ss_pred             HHHHh------CCCCceeeecccccchHHHHHcCCCCCCcE
Confidence            77777      7788 7888876655667899998755543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.84  E-value=7.5e-21  Score=159.11  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=94.3

Q ss_pred             cccCCCCCcEEecCCCC----eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         154 FAAALLPGCSLLGCQAS----LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~----~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      .+|+.+|+|+|++.+|+    .++|+ +++||++||+|||++|||+|..+++.|++++++|++++++|++||+|+++.++
T Consensus         2 ~~G~~~P~f~l~~~~g~~~~~~~~l~-~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~   80 (187)
T 1we0_A            2 LIGTEVQPFRAQAFQSGKDFFEVTEA-DLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHK   80 (187)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETT-TTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCCcCCCeEEeccCCCccceEecHH-HHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH
Confidence            57999999999999999    99999 89999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      +|.+++....  +++|++++|.+.   .+++.||+..
T Consensus        81 ~~~~~~~~~~--~~~~~~~~d~~~---~~~~~~~v~~  112 (187)
T 1we0_A           81 AWHENSPAVG--SIEYIMIGDPSQ---TISRQFDVLN  112 (187)
T ss_dssp             HHHHSCHHHH--TCCSEEEECTTC---HHHHHTTCEE
T ss_pred             HHHHHhcccc--CCCceEEECCch---HHHHHhCCCc
Confidence            8887763211  458999998654   4688899874

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.84  E-value=5.2e-21  Score=165.17  Aligned_cols=114  Identities=26%  Similarity=0.313  Sum_probs=97.2

Q ss_pred             ccccccCCCCCcEEecC---CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172         151 IDRFAAALLPGCSLLGC---QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES  227 (276)
Q Consensus       151 ~~~~~G~~aPdF~L~~~---~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~  227 (276)
                      ..+.+|+++|+|+|++.   +|+.++|+ +++||++||+||+++||++|..++|.|++++++|+++|++||+||+|+++.
T Consensus        38 ~~l~~G~~aP~f~l~~~~d~~G~~v~l~-~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~  116 (222)
T 3ztl_A           38 MVLLPNRPAPEFKGQAVINGEFKEICLK-DYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYS  116 (222)
T ss_dssp             --CCSSEECCCCEEEEEETTEEEEEEGG-GGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHH
T ss_pred             ccccCCCCCCCeEEecccCCCCcEEeHH-HhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            35679999999999965   45899999 899999999999779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         228 HHDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .++|.+.+.+..+. +++|++++|.+.   .+++.||+....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~D~~~---~~~~~ygv~~~~  155 (222)
T 3ztl_A          117 HLAWDNLDRKSGGLGHMKIPLLADRKQ---EISKAYGVFDEE  155 (222)
T ss_dssp             HHHHHHSCGGGTSCCSCSSCEEECSSS---HHHHHTTCBCTT
T ss_pred             HHHHHHHhhhhccccccceeEEeCCch---HHHHHcCCeecC
Confidence            99999887544322 568999999764   468889987543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.83  E-value=2.4e-21  Score=171.05  Aligned_cols=103  Identities=27%  Similarity=0.439  Sum_probs=72.8

Q ss_pred             chhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHH
Q psy1172           2 FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEI   81 (276)
Q Consensus         2 w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~ei   81 (276)
                      |++.+++..|    ..+++||+++|++++++++||++.+..    |.  +.|++||||++|+|++++.++...+|+++|+
T Consensus       142 ~~~~~~~~~g----~~~~~fp~l~D~~~~va~~ygv~~~~~----g~--~~p~tflID~~G~I~~~~~~~~~~~~~~~ei  211 (254)
T 3tjj_A          142 WINTPRRQGG----LGPIRIPLLSDLTHQISKDYGVYLEDS----GH--TLRGLFIIDDKGILRQITLNDLPVGRSVDET  211 (254)
T ss_dssp             HHTSCGGGTS----CCSCSSCEEECTTSHHHHHHTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTCCCCHHHH
T ss_pred             HHHHHHHhcC----CcccccceeeCcHHHHHHHcCCccccC----CC--ccceEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence            5555555544    247999999999999999999986543    43  5799999999999999999999999999999


Q ss_pred             HHHHHhhcccccCCCCcCCCCCCCCceeeCCCC
Q psy1172          82 LRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGL  114 (276)
Q Consensus        82 lr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~  114 (276)
                      ++.|++||.+++++++||+||+||+++|++++.
T Consensus       212 l~~L~alq~~~~~~~~cp~~W~~g~~~~~~~~~  244 (254)
T 3tjj_A          212 LRLVQAFQYTDKHGEVAPAGWKPGSETIIPDPA  244 (254)
T ss_dssp             HHHHHHHHHHHHHC-------------------
T ss_pred             HHHHHhhccccccCccccCCCCCCCceeccChh
Confidence            999999999999999999999999999988753

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.83  E-value=5.2e-21  Score=161.61  Aligned_cols=108  Identities=26%  Similarity=0.296  Sum_probs=94.4

Q ss_pred             cccCCCCCcEEecC--CCC---eEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172         154 FAAALLPGCSLLGC--QAS---LVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES  227 (276)
Q Consensus       154 ~~G~~aPdF~L~~~--~G~---~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~  227 (276)
                      .+|+++|+|+|++.  +|+   .++|+ ++ +||++||+|||++|||+|+.+++.|++++++|+++|++||+||+|+++.
T Consensus         2 ~~G~~~P~f~l~~~~~~G~~~~~v~l~-~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~   80 (198)
T 1zof_A            2 VVTKLAPDFKAPAVLGNNEVDEHFELS-KNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQV   80 (198)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETT-TSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCcCCceEeecccCCCcccceEEHH-HHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH
Confidence            57999999999999  898   99999 78 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc-CCeeEEEeeCCcchhhhhhhhcccc
Q psy1172         228 HHDWIKALVRDCI-LGLLINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       228 ~~~~~~~~~~~~~-~~~~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                      +++|.+++.++.+ .+++|++++|.+.   .+++.||+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~v~  116 (198)
T 1zof_A           81 HFAWKNTPVEKGGIGQVSFPMVADITK---SISRDYDVL  116 (198)
T ss_dssp             HHHHHTSCGGGTCCCCCSSCEEECTTS---HHHHHTTCE
T ss_pred             HHHHHHhhhhcccccCceeEEEECCch---HHHHHhCCc
Confidence            9999888432211 1678999998654   467889987

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.82  E-value=2.2e-20  Score=148.40  Aligned_cols=107  Identities=10%  Similarity=0.052  Sum_probs=91.3

Q ss_pred             cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHH---HHHHHHhCCcEEEEEeCC-ChHHHH
Q psy1172         154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQ---LIKEFEQRTCKVIALSCD-SVESHH  229 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~---~~~~~~~~gv~Vv~VS~D-~~~~~~  229 (276)
                      ++|+++|+|++++.+|+.++++ +++||++||+|| ++|||+|..++|.|.+   ++++|+++++.|++||+| +.+..+
T Consensus         2 ~~G~~~p~f~l~~~~g~~~~l~-~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~   79 (142)
T 3ewl_A            2 NAGMKAADFTYVTVHGDNSRMS-RLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWA   79 (142)
T ss_dssp             CTTSBCCCCEEECTTCCEEEGG-GCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHH
T ss_pred             CCCCcCCCCEEECCCCCEEEhh-hcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHH
Confidence            5799999999999999999999 899999999999 9999999999999998   999999999999999998 556666


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      +|.+++      +++|+++.|.++... .++.||+..-++
T Consensus        80 ~~~~~~------~~~~~~~~d~~~~~~-~~~~~~v~~~P~  112 (142)
T 3ewl_A           80 TKAVYM------PQGWIVGWNKAGDIR-TRQLYDIRATPT  112 (142)
T ss_dssp             HHHTTS------CTTCEEEECTTCHHH-HTTCSCCCSSSE
T ss_pred             HHHHHc------CCCcceeeCCccchh-hHHHcCCCCCCe
Confidence            666665      778999999776531 245888764443

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.82  E-value=2.3e-20  Score=157.41  Aligned_cols=108  Identities=25%  Similarity=0.325  Sum_probs=94.4

Q ss_pred             cccccCCCCCcEEecCC-------------C--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcE
Q psy1172         152 DRFAAALLPGCSLLGCQ-------------A--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCK  216 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~-------------G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~  216 (276)
                      .+.+|+.+|+|+|++.+             |  +.++|+ +++||++||+|||++|||+|..+++.|++++++|++++++
T Consensus         3 ~l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~-~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~   81 (195)
T 2bmx_A            3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSD-EHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQ   81 (195)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETT-SSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEE
T ss_pred             cCCCCCcCCCcCcccccccccccccccccCCCccEeeHH-HhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCE
Confidence            35789999999999998             6  799999 8999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccc
Q psy1172         217 VIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       217 Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                      ||+||+|+++.+++|.+++....  +++|++++|.+.   .+++.||+.
T Consensus        82 vv~Vs~d~~~~~~~~~~~~~~~~--~~~~~~~~d~~~---~~~~~~~v~  125 (195)
T 2bmx_A           82 ILGVSIDSEFAHFQWRAQHNDLK--TLPFPMLSDIKR---ELSQAAGVL  125 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHCTTGG--GCCSCEEECTTS---HHHHHHTCB
T ss_pred             EEEEECCCHHHHHHHHHHhcccc--CCceeEEeCCch---HHHHHhCCc
Confidence            99999999999999988762211  457899988654   467889987

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.82  E-value=1.6e-20  Score=164.32  Aligned_cols=107  Identities=24%  Similarity=0.395  Sum_probs=91.8

Q ss_pred             chhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHH
Q psy1172           2 FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEI   81 (276)
Q Consensus         2 w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~ei   81 (276)
                      |++.+++..|    ..+++||+++|++++++++||+..+..    |+  +.|++||||++|+|++++.++...+++++|+
T Consensus       128 ~~~~~~~~~~----~~~~~fp~l~D~~~~v~~~ygv~~~~~----g~--~~p~~flID~~G~I~~~~~~~~~~~~~~~ei  197 (240)
T 3qpm_A          128 WIITPRKQGG----LGPMKIPLLSDLTHQISKDYGVYLEDQ----GH--TLRGLFIIDEKGVLRQITMNDLPVGRSVDET  197 (240)
T ss_dssp             HHHSCGGGTC----CCSCSSCEEECTTSHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred             HHHHHHhhcC----CCCCceeEEeCchHHHHHHhCCccccC----CC--ccceEEEEcCCCeEEEEEecCCCCCCCHHHH
Confidence            5555554444    247999999999999999999986543    43  5699999999999999999999999999999


Q ss_pred             HHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchh
Q psy1172          82 LRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKD  118 (276)
Q Consensus        82 lr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~  118 (276)
                      ++.|++||.+++++++||+||+||+++|++++.-.++
T Consensus       198 l~~l~~lq~~~~~~~~cp~~W~~g~~~~~~~~~~~~~  234 (240)
T 3qpm_A          198 LRLVQAFQYTDKHGEVCPAGWKPGSDTIIPDPSGKLK  234 (240)
T ss_dssp             HHHHHHHHHHHHHSCBBCTTCCTTSCCBCSSTTTTHH
T ss_pred             HHHHHHhhhhhhcCCccCCCCCCCCceecCCHHHHHH
Confidence            9999999999999999999999999999887654443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=9.9e-20  Score=146.42  Aligned_cols=111  Identities=10%  Similarity=-0.004  Sum_probs=95.6

Q ss_pred             cccccCCCCCcEEecCCCCeEEec-ccCCCCeEEEEEEcCCCCcc--cHHHHHHHHHHHHHH-HhCCcEEEEEeCCC-hH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILE-CSIPAFWGILFSHPSDFTPV--CTTELARVLQLIKEF-EQRTCKVIALSCDS-VE  226 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~-~~~~gk~vvL~f~pa~~cp~--C~~el~~l~~~~~~~-~~~gv~Vv~VS~D~-~~  226 (276)
                      .+.+|+++|+|+|++.+|+.++|+ ++++||++||+|| ++|||+  |+.++|.|++++++| +++|++|++||+|+ ++
T Consensus         4 ~l~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~   82 (150)
T 3fw2_A            4 KSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQ   82 (150)
T ss_dssp             TTSTTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHH
T ss_pred             cccCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHH
Confidence            457899999999999999999987 2579999999999 899999  999999999999999 88999999999985 46


Q ss_pred             HHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         227 SHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      ..++|.+++      +++|+++.|.......+++.||+..-++
T Consensus        83 ~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~v~~~P~  119 (150)
T 3fw2_A           83 QWKDAIKRD------TLDWEQVCDFGGLNSEVAKQYSIYKIPA  119 (150)
T ss_dssp             HHHHHHHHT------TCCSEEECCSCGGGCHHHHHTTCCSSSE
T ss_pred             HHHHHHHHh------CCCceEEEcCcccchHHHHHcCCCccCe
Confidence            777777777      7899999997655556788999864443

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.81  E-value=1.2e-19  Score=146.21  Aligned_cols=108  Identities=12%  Similarity=0.070  Sum_probs=93.8

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~  231 (276)
                      +.+|+.+|+|++++.+|+.++++ +++||++||+|| ++|||+|+.+++.|++++++|.+++++|++|+.|. .+..+++
T Consensus         3 l~~g~~~p~f~l~~~~G~~~~l~-~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~   80 (152)
T 2lrn_A            3 LATGSVAPAITGIDLKGNSVSLN-DFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKA   80 (152)
T ss_dssp             SCTTEECCCCEEECSSSCEEESG-GGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHH
T ss_pred             ccCCCcCCCceeEcCCCCEEeHH-HcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHH
Confidence            46899999999999999999999 899999999999 99999999999999999999999999999999984 5667777


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .+++      +++|+++.|.......+++.||+..-+
T Consensus        81 ~~~~------~~~~~~~~d~~~~~~~~~~~~~v~~~P  111 (152)
T 2lrn_A           81 IEED------KSYWNQVLLQKDDVKDVLESYCIVGFP  111 (152)
T ss_dssp             HHHH------TCCSEEEEECHHHHHHHHHHTTCCSSC
T ss_pred             HHHh------CCCCeEEecccchhHHHHHHhCCCcCC
Confidence            7777      778999998743345678889986433

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.81  E-value=3.8e-20  Score=159.15  Aligned_cols=106  Identities=11%  Similarity=0.084  Sum_probs=94.6

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCe-EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFW-GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------  222 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~-vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------  222 (276)
                      .+.+|+++|+|+|++.+|+.++|+ +++||+ +||+|| ++|||+|+.+++.|++++++|+++|++||+||+        
T Consensus        31 ~l~~G~~aP~f~l~~~~G~~v~l~-~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~  108 (218)
T 3u5r_E           31 SITLGTRAADFVLPDAGGNLFTLA-EFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPE  108 (218)
T ss_dssp             CCCTTCBCCCCCEECTTCCEECGG-GGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGG
T ss_pred             cCCCCCcCCCcEeECCCCCEEeHH-HhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccc
Confidence            457999999999999999999999 899996 999999 899999999999999999999999999999999        


Q ss_pred             CChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         223 DSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       223 D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |+++.+++|.+++      +++|++++|.+.   .+++.||+..-+
T Consensus       109 d~~~~~~~~~~~~------~~~~~~l~D~~~---~~~~~~~v~~~P  145 (218)
T 3u5r_E          109 ETLERVGAEVKAY------GYGFPYLKDASQ---SVAKAYGAACTP  145 (218)
T ss_dssp             GSHHHHHHHHHHH------TCCSCEEECTTC---HHHHHHTCCEES
T ss_pred             CCHHHHHHHHHHh------CCCccEEECCcc---HHHHHcCCCCCC
Confidence            6778888888888      789999999655   467888886443

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.80  E-value=8.5e-20  Score=145.50  Aligned_cols=109  Identities=11%  Similarity=-0.005  Sum_probs=89.0

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHH---HHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQ---LIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~---~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      ..+|++||+|++++.+|+.++|+ +++||++||+|| ++||++|+.++|.|++   ++++|++++++|++||+|+..  .
T Consensus         5 ~~~G~~ap~f~l~~~~g~~~~l~-~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~--~   80 (142)
T 3eur_A            5 NRLGTKALNFTYTLDSGVKGTLY-QFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEEL--D   80 (142)
T ss_dssp             TCTTSBCCCCEEEETTSCEEETT-TCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCH--H
T ss_pred             hcCCCccCCcEEEcCCCCEeeHH-HcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCH--H
Confidence            36899999999999999999999 899999999999 9999999999999999   999999999999999998642  2


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      .|.+...+.   ++.++.+.|.+.. ...++.|++..-++
T Consensus        81 ~~~~~~~~~---~~~~~~~~d~~~~-~~~~~~~~v~~~P~  116 (142)
T 3eur_A           81 EWKKHRNDF---AKEWTNGYDKELV-IKNKNLYDLRAIPT  116 (142)
T ss_dssp             HHHHHGGGS---CTTSEEEECTTCH-HHHTTCSCCTTCSE
T ss_pred             HHHHHHHhc---ccccccccCccch-hhhhhhcCCCcCCe
Confidence            344444333   6678888886543 23477888864443

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.80  E-value=1.3e-19  Score=150.29  Aligned_cols=103  Identities=16%  Similarity=0.115  Sum_probs=87.2

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+.+|+.+|+|+|++.+|+.++++ +++||++||+||++.|||+|+.++|.|++++++   .+++||+||+|+++.+++|
T Consensus        17 ~l~~G~~~P~f~l~~~~G~~v~l~-~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D~~~~~~~~   92 (175)
T 1xvq_A           17 LPAVGSPAPAFTLTGGDLGVISSD-QFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSKDLPFAQKRF   92 (175)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGG-GGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESSCHHHHTTC
T ss_pred             CCCcCCcCCCeEEECCCCCEEeHH-HcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEECCCHHHHHHH
Confidence            456899999999999999999999 899999999999444499999999999999988   7899999999999988889


Q ss_pred             HHHHHhcccCCe-eEEEeeCCcchhhhhhhhcccccc
Q psy1172         232 IKALVRDCILGL-LINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       232 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      .+++      ++ +|++++|.+.   .+++.||+...
T Consensus        93 ~~~~------~~~~~~~l~D~~~---~~~~~~gv~~~  120 (175)
T 1xvq_A           93 CGAE------GTENVMPASAFRD---SFGEDYGVTIA  120 (175)
T ss_dssp             C------------CEEEEECTTS---SHHHHTTCBBC
T ss_pred             HHHc------CCCCceEeeCCHH---HHHHHhCCccc
Confidence            8888      77 7999999764   46888998754

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.80  E-value=2.8e-19  Score=149.52  Aligned_cols=92  Identities=12%  Similarity=0.183  Sum_probs=83.2

Q ss_pred             ccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-------
Q psy1172         151 IDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-------  223 (276)
Q Consensus       151 ~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-------  223 (276)
                      .++.+|+.+|+|+|++.+|+.++|+ +++||++||+|| ++|||+|+.++|.|++++++|+++|++||+||.|       
T Consensus        21 ~~~~~g~~~p~f~l~~~~G~~v~l~-~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~   98 (185)
T 2gs3_A           21 QSMRCARSMHEFSAKDIDGHMVNLD-KYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEP   98 (185)
T ss_dssp             GGGGGCCCGGGCEEEBTTSCEEEGG-GGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCC
T ss_pred             hhccCCCCcCCceeEcCCCCEeeHH-HcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCC
Confidence            4567899999999999999999999 899999999999 9999999999999999999999999999999986       


Q ss_pred             -ChHHHHHHHHHHHhcccCCeeEEEeeC
Q psy1172         224 -SVESHHDWIKALVRDCILGLLINLSVD  250 (276)
Q Consensus       224 -~~~~~~~~~~~~~~~~~~~~~~~~l~D  250 (276)
                       +++.+++|.+++      +++|+++.|
T Consensus        99 ~~~~~~~~~~~~~------~~~~p~~~~  120 (185)
T 2gs3_A           99 GSNEEIKEFAAGY------NVKFDMFSK  120 (185)
T ss_dssp             SCHHHHHHHHHHT------TCCSEEBCC
T ss_pred             CCHHHHHHHHHHc------CCCCeeeee
Confidence             356777888777      778999874

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.80  E-value=4.3e-20  Score=151.33  Aligned_cols=103  Identities=16%  Similarity=0.155  Sum_probs=91.2

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCC-CcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDF-TPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~-cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      .+.+|+++|+|+|++.+|+.++|+ +++||++||+|| ++| ||+|+.+++.|++++++|  .+++||+||.|+++.+++
T Consensus        17 ~~~~G~~~p~f~l~~~~G~~~~l~-~~~gk~~vl~F~-~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~~~~   92 (167)
T 2jsy_A           17 EVKVGDQAPDFTVLTNSLEEKSLA-DMKGKVTIISVI-PSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFAQAR   92 (167)
T ss_dssp             CCCTTSCCCCCEEEBTTCCEEEHH-HHTTSCEEEEEC-SCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGGTSC
T ss_pred             ccCCCCcCCceEEECCCCCEeeHH-HhCCCeEEEEEe-cCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHHHHH
Confidence            357899999999999999999999 899999999999 666 999999999999999999  889999999999888888


Q ss_pred             HHHHHHhcccCCe-eEEEeeC-Ccchhhhhhhhcccccc
Q psy1172         231 WIKALVRDCILGL-LINLSVD-DFKEVEGRSRRFQESLN  267 (276)
Q Consensus       231 ~~~~~~~~~~~~~-~~~~l~D-~~~~~~~~a~~ygv~~~  267 (276)
                      |.+++      ++ +|++++| .++   ++++.||+...
T Consensus        93 ~~~~~------~~~~~~~~~d~~~~---~~~~~~~v~~~  122 (167)
T 2jsy_A           93 WCGAN------GIDKVETLSDHRDM---SFGEAFGVYIK  122 (167)
T ss_dssp             CGGGS------SCTTEEEEEGGGTC---HHHHHTTCBBT
T ss_pred             HHHhc------CCCCceEeeCCchh---HHHHHhCCccc
Confidence            88777      77 8999988 443   46788998764

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.79  E-value=5.2e-19  Score=146.96  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=89.9

Q ss_pred             cccccCCCCCcEEecC--CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCc------EEEEEeCC
Q psy1172         152 DRFAAALLPGCSLLGC--QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTC------KVIALSCD  223 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~--~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv------~Vv~VS~D  223 (276)
                      .+..|+++|+|+|++.  +|+.++|+ +++||++||+|| ++|||+|+.+++.|++++++|+++|+      +|++|+.|
T Consensus        30 ~~~~g~~~p~f~l~~~~~~g~~~~l~-~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d  107 (183)
T 3lwa_A           30 DEADRQQLPDIGGDSLMEEGTQINLS-DFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVR  107 (183)
T ss_dssp             CGGGCCCCCCCEEEBSSSTTCEEEGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECS
T ss_pred             ccccCCCCCceeccccccCCcEecHH-HhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECC
Confidence            4678999999999999  99999999 899999999999 99999999999999999999999999      99999998


Q ss_pred             C--hHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcc
Q psy1172         224 S--VESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQ  263 (276)
Q Consensus       224 ~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~yg  263 (276)
                      +  ++..++|.+++      +++|+++.|.++..   .+.||
T Consensus       108 ~~~~~~~~~~~~~~------~~~~~~~~d~~~~~---~~~~~  140 (183)
T 3lwa_A          108 DYSRDIAQDFVTDN------GLDYPSIYDPPFMT---AASLG  140 (183)
T ss_dssp             CCCHHHHHHHHHHT------TCCSCEEECTTCGG---GGGTT
T ss_pred             CCCHHHHHHHHHHc------CCCccEEECCcchH---HHHhc
Confidence            7  78888888888      78899999977654   44454

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.79  E-value=2e-19  Score=149.87  Aligned_cols=91  Identities=11%  Similarity=0.143  Sum_probs=79.5

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------  223 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------  223 (276)
                      .+++|+++|+|+|++.+|+.++++ +++||++||+|| ++|||+|+.++|.|++++++|+++|++|++||+|        
T Consensus        22 ~~~~g~~~p~f~l~~~~G~~~~l~-~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~   99 (181)
T 2p31_A           22 SMQQEQDFYDFKAVNIRGKLVSLE-KYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPD   99 (181)
T ss_dssp             -----CCGGGCEEEBTTSCEEEGG-GGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred             cCCcCCccCceEeecCCCCEecHH-HcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCC
Confidence            557999999999999999999999 899999999999 9999999999999999999999999999999986        


Q ss_pred             ChHHHHHHHHH-HHhcccCCeeEEEeeC
Q psy1172         224 SVESHHDWIKA-LVRDCILGLLINLSVD  250 (276)
Q Consensus       224 ~~~~~~~~~~~-~~~~~~~~~~~~~l~D  250 (276)
                      +++.+++|.++ +      +++||+++|
T Consensus       100 ~~~~~~~~~~~~~------~~~~p~~~~  121 (181)
T 2p31_A          100 SNKEIESFARRTY------SVSFPMFSK  121 (181)
T ss_dssp             CHHHHHHHHHHHH------CCCSCBBCC
T ss_pred             CHHHHHHHHHhhc------CCCceeEee
Confidence            56778888887 7      778898864

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.79  E-value=2.2e-19  Score=145.43  Aligned_cols=106  Identities=9%  Similarity=0.018  Sum_probs=89.4

Q ss_pred             cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHH
Q psy1172         154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK  233 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~  233 (276)
                      ..|+.+|+|+|++.+|+.++|+ +++||++||+|| ++|||+|+.+++.|++++++|+++|++|++||.|+...  .+.+
T Consensus        10 ~~g~~~p~f~l~~~~G~~~~l~-~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~--~~~~   85 (152)
T 2lrt_A           10 IKEASIIDIQLKDLKGNTRSLT-DLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEH--FWKT   85 (152)
T ss_dssp             SCTTCSCCCCEEBTTSCEECTT-TGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHH--HHHH
T ss_pred             ccCCCCCCeEEEcCCCCEEeHH-HhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHH--HHHH
Confidence            4789999999999999999999 799999999999 89999999999999999999999999999999997542  2333


Q ss_pred             HHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         234 ALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       234 ~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .. +    +++|+++.|.++....+++.||+..-+
T Consensus        86 ~~-~----~~~~~~~~d~~~~~~~~~~~~~v~~~P  115 (152)
T 2lrt_A           86 SA-D----NLPWVCVRDANGAYSSYISLYNVTNLP  115 (152)
T ss_dssp             HH-T----TCSSEEEECSSGGGCHHHHHHTCCSCS
T ss_pred             HH-h----CCCceEEECCCCcchHHHHHcCcccCc
Confidence            32 1    358999999877655578889986443

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.79  E-value=2.5e-19  Score=146.60  Aligned_cols=106  Identities=20%  Similarity=0.150  Sum_probs=93.4

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcc-cHHHHHHHHHHHHHHHhC---CcEEEEEeCC----
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPV-CTTELARVLQLIKEFEQR---TCKVIALSCD----  223 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~-C~~el~~l~~~~~~~~~~---gv~Vv~VS~D----  223 (276)
                      .+.+|+.+|+|+|++.+| .++++ +++||++||+|| ++|||+ |+.+++.|++++++|+++   +++||+||+|    
T Consensus         9 ~~~~G~~~p~f~l~~~~g-~~~l~-~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d   85 (172)
T 2k6v_A            9 TRLLNPKPVDFALEGPQG-PVRLS-QFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERD   85 (172)
T ss_dssp             EEEEEEEECCCEEECSSS-EEEGG-GSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTC
T ss_pred             ccccCCCCCCeEEEcCCC-CCcHH-HhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCC
Confidence            345799999999999999 99999 899999999999 999997 999999999999999875   7999999976    


Q ss_pred             ChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172         224 SVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      +++.+++|.+++      +++|++++|.+.....+++.||+..
T Consensus        86 ~~~~~~~~~~~~------~~~~~~l~d~~~~~~~~~~~~gv~~  122 (172)
T 2k6v_A           86 PPEVADRYAKAF------HPSFLGLSGSPEAVREAAQTFGVFY  122 (172)
T ss_dssp             CHHHHHHHHHHH------CTTEEEECCCHHHHHHHHHHHTCCE
T ss_pred             CHHHHHHHHHHh------CCCcEEEeCCHHHHHHHHHhcCeEE
Confidence            467888888888      7789999998765567788898764

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.79  E-value=4.4e-19  Score=147.78  Aligned_cols=97  Identities=12%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             cccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC------
Q psy1172         150 LIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD------  223 (276)
Q Consensus       150 ~~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D------  223 (276)
                      ...+.+|+.+|+|+|++.+|+.++|+ +++||++||+|| ++|||+|..+++.|++++++|+++|++|++||+|      
T Consensus        18 ~~~~~~g~~~p~f~l~~~~G~~~~l~-~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e   95 (183)
T 2obi_A           18 RDDWRCARSMHEFSAKDIDGHMVNLD-KYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE   95 (183)
T ss_dssp             -CCGGGCCSGGGCEEEBTTSCEEEGG-GGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred             ccCCcccCcccceEEEcCCCCEeeHH-HcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCC
Confidence            34668999999999999999999999 899999999999 9999999999999999999999999999999986      


Q ss_pred             --ChHHHHHHHHHHHhcccCCeeEEEee--CCcch
Q psy1172         224 --SVESHHDWIKALVRDCILGLLINLSV--DDFKE  254 (276)
Q Consensus       224 --~~~~~~~~~~~~~~~~~~~~~~~~l~--D~~~~  254 (276)
                        +++.+++|.+++      +++|+++.  |.++.
T Consensus        96 ~~~~~~~~~~~~~~------~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           96 PGSNEEIKEFAAGY------NVKFDMFSKICVNGD  124 (183)
T ss_dssp             CSCHHHHHHHHHTT------TCCSEEBCCCCCSST
T ss_pred             CCCHHHHHHHHHHc------CCCceEEeeeccCCc
Confidence              467777787776      77899987  55443

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.79  E-value=5.9e-19  Score=143.96  Aligned_cols=95  Identities=6%  Similarity=0.085  Sum_probs=82.5

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------  223 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------  223 (276)
                      .+++|+.+|+|+|++.+|+.++++ +++||++||+|| ++|||+|..+++.|++++++|+++|++||+||.|        
T Consensus         4 ~~~~g~~~p~f~l~~~~G~~~~l~-~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~   81 (169)
T 2v1m_A            4 SHKSWNSIYEFTVKDINGVDVSLE-KYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPW   81 (169)
T ss_dssp             ---CCCSGGGCEEEBTTSCEEEGG-GGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred             cccCCcccccceeecCCCCCccHH-HcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCC
Confidence            356899999999999999999999 899999999999 8999999999999999999999999999999986        


Q ss_pred             ChHHHHHH-HHHHHhcccCCeeEEEee--CCcch
Q psy1172         224 SVESHHDW-IKALVRDCILGLLINLSV--DDFKE  254 (276)
Q Consensus       224 ~~~~~~~~-~~~~~~~~~~~~~~~~l~--D~~~~  254 (276)
                      +++.+++| .+++      +++||++.  |.++.
T Consensus        82 ~~~~~~~~~~~~~------~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           82 AEAEIKKFVTEKY------GVQFDMFSKIKVNGS  109 (169)
T ss_dssp             CHHHHHHHHHHHH------CCCSEEBCCCCCSST
T ss_pred             CHHHHHHHHHHhc------CCCCceEEEEeecCc
Confidence            35677888 4777      77899986  55443

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.78  E-value=3.7e-19  Score=153.25  Aligned_cols=90  Identities=8%  Similarity=0.060  Sum_probs=80.1

Q ss_pred             cccCCCCCcEEecCC-CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------C
Q psy1172         154 FAAALLPGCSLLGCQ-ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------S  224 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~-G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~  224 (276)
                      ..+..+|+|+|++.+ |+.++|+ +|+||+|||+|| ++|||+|+ |+|.|++++++|+++|++||+||.|        +
T Consensus        30 ~~~~~~pdF~l~d~~~G~~v~Ls-d~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~  106 (215)
T 2i3y_A           30 DEKGTIYDYEAIALNKNEYVSFK-QYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGD  106 (215)
T ss_dssp             CCCCCGGGCEEEBSSSSCEEEGG-GGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSC
T ss_pred             cccCCcCCcEeeeCCCCCEEcHH-HhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCC
Confidence            456789999999999 9999999 899999999999 99999999 9999999999999999999999964        4


Q ss_pred             hHHHHHHHH------HHHhcccCCeeEEEeeCCc
Q psy1172         225 VESHHDWIK------ALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       225 ~~~~~~~~~------~~~~~~~~~~~~~~l~D~~  252 (276)
                      .+.+++|++      ++      +++||+++|.+
T Consensus       107 ~~~i~~f~~~~~~~~~~------~~~fpll~d~d  134 (215)
T 2i3y_A          107 NKEILPGLKYVRPGGGF------VPSFQLFEKGD  134 (215)
T ss_dssp             HHHHHHHHHHTSSCTTC------CCSSEEBCCCC
T ss_pred             HHHHHHHHHhccchhcc------CccceeEeeec
Confidence            567788887      55      77899998654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.78  E-value=6.3e-19  Score=146.59  Aligned_cols=89  Identities=12%  Similarity=0.170  Sum_probs=81.2

Q ss_pred             cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------Ch
Q psy1172         154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SV  225 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~  225 (276)
                      ..|+.+|+|+|++.+|+.++++ +++||++||+|| ++|||+|..++|.|++++++|+++|++||+||+|        ++
T Consensus        13 ~~~~~~p~f~l~d~~G~~v~l~-~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~   90 (180)
T 3kij_A           13 PKINSFYAFEVKDAKGRTVSLE-KYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPS   90 (180)
T ss_dssp             CCCCCGGGCEEEBTTSCEEEGG-GGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCH
T ss_pred             CCcCcccceEEecCCCCEecHH-HcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCH
Confidence            4789999999999999999999 899999999999 9999999999999999999999999999999965        67


Q ss_pred             HHHHHHHHH-HHhcccCCeeEEEeeC
Q psy1172         226 ESHHDWIKA-LVRDCILGLLINLSVD  250 (276)
Q Consensus       226 ~~~~~~~~~-~~~~~~~~~~~~~l~D  250 (276)
                      +.+++|.++ +      ++.|+++.+
T Consensus        91 ~~~~~~~~~~~------~~~~~~~~~  110 (180)
T 3kij_A           91 KEVESFARKNY------GVTFPIFHK  110 (180)
T ss_dssp             HHHHHHHHHHH------CCCSCBBCC
T ss_pred             HHHHHHHHHhc------CCCCceeee
Confidence            788888888 7      778888753

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.78  E-value=5.2e-19  Score=145.14  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=84.5

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHHhCC--cEEEEEeCC----C
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFEQRT--CKVIALSCD----S  224 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D----~  224 (276)
                      .+.+|+.+|+|+|++.+|+.++|+ +++||++||+|| ++||| +|..+++.|++++++|+++|  ++||+||+|    +
T Consensus         6 ~l~~g~~~p~f~l~~~~G~~~~l~-~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~   83 (174)
T 1xzo_A            6 KDPLNYEVEPFTFQNQDGKNVSLE-SLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDK   83 (174)
T ss_dssp             CSCCCEECCCCEEECTTSCEEETG-GGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC
T ss_pred             cCccccccCCcEEEcCCCCEEehh-hcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCC
Confidence            456899999999999999999999 799999999999 99999 99999999999999999887  999999997    5


Q ss_pred             hHHHHHHHHHHHhcccCCeeE---EEeeCCcch
Q psy1172         225 VESHHDWIKALVRDCILGLLI---NLSVDDFKE  254 (276)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~---~~l~D~~~~  254 (276)
                      ++.+++|.+++      +++|   +++.|.+..
T Consensus        84 ~~~~~~~~~~~------~~~~~~~~~l~d~~~~  110 (174)
T 1xzo_A           84 PKQLKKFAANY------PLSFDNWDFLTGYSQS  110 (174)
T ss_dssp             HHHHHHHHTTS------CCCGGGEEEEBCSCHH
T ss_pred             HHHHHHHHHHc------CCCCcceEEEeCCCHH
Confidence            67777777766      6667   999886654

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.78  E-value=3.1e-19  Score=152.99  Aligned_cols=95  Identities=28%  Similarity=0.428  Sum_probs=85.2

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVA   97 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~   97 (276)
                      +++||+++|++++++++||+..+..    |.  +.|++||||++|+|++++.++...+++++|+++.|++|+.+++++++
T Consensus       111 ~~~fp~l~D~~~~~~~~ygv~~~~~----g~--~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~~~~~~~  184 (211)
T 2pn8_A          111 PIRIPLLSDLTHQISKDYGVYLEDS----GH--TLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV  184 (211)
T ss_dssp             SCSSCEEECTTSHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHCCB
T ss_pred             CCceEEEECCchHHHHHcCCcccCC----Cc--ccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhcccCCcc
Confidence            6899999999999999999975432    32  46999999999999999998889999999999999999999999999


Q ss_pred             cCCCCCCCCceeeCCCCCchh
Q psy1172          98 TPVDWKVGMEIEVRPGLVSKD  118 (276)
Q Consensus        98 ~p~~w~~g~~~~~~p~~~~~~  118 (276)
                      ||+||++|+++|++|+....+
T Consensus       185 ~p~~w~~g~~~~~~~~~~~~~  205 (211)
T 2pn8_A          185 CPAGWKPGSETIIPDPAGKLK  205 (211)
T ss_dssp             BCTTCCTTSCCBCSSTTTHHH
T ss_pred             cCCCCCCCCccccCCchhHHH
Confidence            999999999999998765543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.78  E-value=1.4e-18  Score=139.29  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=91.8

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~  231 (276)
                      +.+|+++|+|++++ +|+.++++ +++||++||+|| ++|||+|..+++.|.+++++|.++|+.|++|++| +.+..++|
T Consensus         3 l~~G~~~P~f~l~~-~g~~~~l~-~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~   79 (152)
T 3gl3_A            3 LDKGDKAPDFALPG-KTGVVKLS-DKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKF   79 (152)
T ss_dssp             CCTTSBCCCCEEEB-SSSEEEGG-GGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHH
T ss_pred             CCCCCcCCceEeeC-CCCeEeHH-HhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHH
Confidence            57899999999999 99999999 899999999999 9999999999999999999999999999999998 56677777


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .+++      +++|+++.|....   +++.||+..-+
T Consensus        80 ~~~~------~~~~~~~~d~~~~---~~~~~~v~~~P  107 (152)
T 3gl3_A           80 LAQV------PAEFTVAFDPKGQ---TPRLYGVKGMP  107 (152)
T ss_dssp             HHHS------CCCSEEEECTTCH---HHHHTTCCSSS
T ss_pred             HHHc------CCCCceeECCcch---hHHHcCCCCCC
Confidence            7777      7789999987654   67788875433

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.78  E-value=9.8e-19  Score=140.51  Aligned_cols=105  Identities=13%  Similarity=0.243  Sum_probs=92.8

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--hHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--VESHHD  230 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--~~~~~~  230 (276)
                      +.+|+++|+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.|++++++|.+.++.|++|++|.  ++..++
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~-~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~   79 (154)
T 3kcm_A            2 SLEENPAPDFTLNTLNGEVVKLS-DLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEE   79 (154)
T ss_dssp             -CTTSBCCCCEEECTTSCEEEGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHH
T ss_pred             CCCCCCCCCeEEEcCCCCEEehh-hcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHH
Confidence            46899999999999999999999 889999999999 99999999999999999999998899999999986  677788


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |.+.+      +++|+++.|.+..   +++.||+..-+
T Consensus        80 ~~~~~------~~~~~~~~d~~~~---~~~~~~v~~~P  108 (154)
T 3kcm_A           80 FFRKT------GFTLPVLLDADKR---VGKLYGTTGVP  108 (154)
T ss_dssp             HHHHH------CCCCCEEECTTCH---HHHHHTCCSBC
T ss_pred             HHHHc------CCCeeEEecCchH---HHHHhCCCCCC
Confidence            88888      7889999986554   57788876444

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.77  E-value=3.4e-19  Score=149.64  Aligned_cols=97  Identities=12%  Similarity=0.151  Sum_probs=81.9

Q ss_pred             CCCCcccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--
Q psy1172         146 VPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--  223 (276)
Q Consensus       146 ~~~~~~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--  223 (276)
                      .++..+.++.|+.+|+|+|++.+|+.++|+ +++||++||+|| ++|||+|+.+++.|++++++|+++|++||+||+|  
T Consensus        15 ~~~~~s~~~~~~~~p~f~l~~~~G~~~~l~-~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~   92 (190)
T 2vup_A           15 VPRGGSHMSAASSIFDFEVLDADHKPYNLV-QHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQF   92 (190)
T ss_dssp             ---------CCCSGGGSCCBBTTSSBCCGG-GGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCS
T ss_pred             cccccccCCCCCcccCeEEEcCCCCEEEHH-HcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCcc
Confidence            455566778999999999999999999999 899999999999 9999999999999999999999999999999998  


Q ss_pred             ------ChHHHHHHH-HHHHhcccCCeeEEEeeC
Q psy1172         224 ------SVESHHDWI-KALVRDCILGLLINLSVD  250 (276)
Q Consensus       224 ------~~~~~~~~~-~~~~~~~~~~~~~~~l~D  250 (276)
                            +++.+++|. +++      +++|+++.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~------~~~~p~l~~  120 (190)
T 2vup_A           93 GGQEPGNEEEIKEFVCTKF------KAEFPIMAK  120 (190)
T ss_dssp             TTCCCSCHHHHHHHHHHHH------CCCSCBBCC
T ss_pred             CCCCCCCHHHHHHHHHHhc------CCCeEEEee
Confidence                  677888888 777      778998873

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.77  E-value=2.3e-19  Score=154.67  Aligned_cols=98  Identities=20%  Similarity=0.405  Sum_probs=64.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      .+++||+++|.+++++++||+..+..    |.  ..|++||||++|+|++.+.++...+++.+|++++|++||.++++++
T Consensus       118 ~~~~fp~l~D~~~~i~~~ygv~~~~~----g~--~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~~~~~~  191 (220)
T 1zye_A          118 GHMNIALLSDLTKQISRDYGVLLEGP----GL--ALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGE  191 (220)
T ss_dssp             CSCSSEEEECTTSHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHTTC---
T ss_pred             cCCceEEEECCcHHHHHHhCCeecCC----Cc--ccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhhcccCC
Confidence            37999999999999999999975543    43  5699999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCceeeCCCCCchhhhccC
Q psy1172          97 ATPVDWKVGMEIEVRPGLVSKDSEGKL  123 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p~~~~~~~~~~~  123 (276)
                      .||+||+||+++|++|+   +++++.|
T Consensus       192 ~cp~~W~~g~~~~~~~~---~~~~~~~  215 (220)
T 1zye_A          192 VSPANWTPESPTIKPHP---TASREYF  215 (220)
T ss_dssp             ---------------------------
T ss_pred             ccCCCCCCCCceecCCH---HHHHHHH
Confidence            99999999999999876   4454443

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.77  E-value=8.2e-19  Score=146.36  Aligned_cols=105  Identities=10%  Similarity=0.165  Sum_probs=92.9

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------C
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------D  223 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D  223 (276)
                      .+.+|+.+|+|+|++.+|+.++|+ +++||++||+|| ++||++|..+++.|++++++|.++ ++|++|+.        |
T Consensus         6 ~~~~g~~~p~f~l~~~~G~~~~l~-~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d   82 (188)
T 2cvb_A            6 ELPLESPLIDAELPDPRGGRYRLS-QFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPED   82 (188)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGG-GCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGG
T ss_pred             cCCCCCCCCCceeecCCCCEEeHH-HhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCcccccccc
Confidence            457899999999999999999999 899999999999 999999999999999999999888 99999999        5


Q ss_pred             ChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         224 SVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      +.+.+++|.+++      +++|+++.|.+..   +++.||+..-+
T Consensus        83 ~~~~~~~~~~~~------~~~~~~~~d~~~~---~~~~~~v~~~P  118 (188)
T 2cvb_A           83 APEKMAAFAEEH------GIFFPYLLDETQE---VAKAYRALRTP  118 (188)
T ss_dssp             SHHHHHHHHHHH------TCCSCEEECSSSH---HHHHTTCCEES
T ss_pred             CHHHHHHHHHHh------CCCceEEECCcch---HHHHcCCCCCC
Confidence            677888888888      7789999986554   57788876443

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.77  E-value=1e-18  Score=145.35  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=90.9

Q ss_pred             cccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh--HH
Q psy1172         150 LIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV--ES  227 (276)
Q Consensus       150 ~~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~--~~  227 (276)
                      ...+.+|+.+|+|++++.+|+.++|+ +++||++||+|| ++||++|+.+++.|++++++|++.+++|++||.|..  +.
T Consensus        31 ~~~~~~g~~~p~f~l~~~~G~~~~l~-~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~  108 (186)
T 1jfu_A           31 LTMASAPLKLPDLAFEDADGKPKKLS-DFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK  108 (186)
T ss_dssp             CEECCSCCBCCCCEEECTTSCEEEGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTH
T ss_pred             hccccCCCcCCCcEeEcCCCCEeeHH-HcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHH
Confidence            34557899999999999999999999 899999999999 999999999999999999999888999999999853  67


Q ss_pred             HHHHHHHHHhcccCCe-eEEEeeCCcchhhhhhhhcccc
Q psy1172         228 HHDWIKALVRDCILGL-LINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       228 ~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                      .++|.+++      ++ .|+++.|.++.   +++.|++.
T Consensus       109 ~~~~~~~~------~~~~~~~~~d~~~~---~~~~~~~~  138 (186)
T 1jfu_A          109 PKTFLKEA------NLTRLGYFNDQKAK---VFQDLKAI  138 (186)
T ss_dssp             HHHHHHHT------TCCTTCCEECTTCH---HHHHHHTT
T ss_pred             HHHHHHHc------CCCCCceEECCcch---HHHHhccc
Confidence            78888888      66 48888886543   56677764

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.77  E-value=6.7e-19  Score=140.00  Aligned_cols=107  Identities=12%  Similarity=0.087  Sum_probs=93.5

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~  231 (276)
                      +.+|+++|+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.|++++++|.++|+.|++|+.| +.+..++|
T Consensus         5 ~~~G~~~p~~~l~~~~g~~~~l~-~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~   82 (148)
T 3hcz_A            5 LLLGKKAPNLYMTDTTGTYRYLY-DVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKF   82 (148)
T ss_dssp             CCTTSBCCCCCCBCTTSCBCCGG-GCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHH
T ss_pred             cCCCCcCCceEEecCCCCEEEhH-HcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHH
Confidence            56899999999999999999999 889999999999 9999999999999999999999999999999998 56788888


Q ss_pred             HHHHHhcccCCee-EEEeeCCcchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .+++      +++ ++++.|.++. ..+++.||+..-+
T Consensus        83 ~~~~------~~~~~~~~~d~~~~-~~~~~~~~i~~~P  113 (148)
T 3hcz_A           83 IRSK------KIGGWLNVRDSKNH-TDFKITYDIYATP  113 (148)
T ss_dssp             HHHH------TCTTSEEEECTTCC-CCHHHHHCCCSSC
T ss_pred             HHHc------CCCCceEEeccccc-hhHHHhcCcCCCC
Confidence            8888      777 9999887653 1257788875443

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.77  E-value=2.5e-19  Score=144.78  Aligned_cols=106  Identities=12%  Similarity=0.129  Sum_probs=90.9

Q ss_pred             ccCCCCCcEEecC--CCCeEEecccCCCCeEEEEEEcCCCCcccHHH-HHHHHHHHHHHHhCCcEEEEEeC-------CC
Q psy1172         155 AAALLPGCSLLGC--QASLVILECSIPAFWGILFSHPSDFTPVCTTE-LARVLQLIKEFEQRTCKVIALSC-------DS  224 (276)
Q Consensus       155 ~G~~aPdF~L~~~--~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~e-l~~l~~~~~~~~~~gv~Vv~VS~-------D~  224 (276)
                      .|+++|+|+|++.  +|+.++++ +++||++||+|| ++|||+|..+ +|.|++++++|+++++.|++||+       |+
T Consensus         2 ~g~~aP~f~l~~~~~~g~~~~l~-~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   79 (158)
T 3eyt_A            2 NAMKAPELQIQQWFNSATDLTLA-DLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMT   79 (158)
T ss_dssp             CCEECCCCCEEEEESCSSCCCTG-GGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred             CCCcCCCceehhhhcCCCccCHH-HhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCC
Confidence            5889999999994  78999999 899999999999 9999999997 99999999999988999999996       47


Q ss_pred             hHHHHHHHHHHHhcccCCeeEEEeeCCcchhh--hhhhhccccccc
Q psy1172         225 VESHHDWIKALVRDCILGLLINLSVDDFKEVE--GRSRRFQESLNT  268 (276)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~--~~a~~ygv~~~~  268 (276)
                      ++..++|.+++      +++|+++.|.+....  .+++.||+..-+
T Consensus        80 ~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~v~~~P  119 (158)
T 3eyt_A           80 PISLKAFLHEY------RIKFPVGVDQPGDGAMPRTMAAYQMRGTP  119 (158)
T ss_dssp             HHHHHHHHHHT------TCCSCEEEECCCSSSSCHHHHHTTCCSSS
T ss_pred             HHHHHHHHHHc------CCCceEEEcCccchhhHHHHHHcCCCCCC
Confidence            78888888888      788999988765211  367888886444

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.77  E-value=1.1e-18  Score=142.57  Aligned_cols=94  Identities=11%  Similarity=0.150  Sum_probs=80.2

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------C
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------S  224 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~  224 (276)
                      +.+|+.+|+|+|++.+|+.++++ +++||++||+|| ++|||+|..++|.|++++++|+++|++|++||+|        +
T Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~-~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~   83 (170)
T 2p5q_A            6 SKNPESVHDFTVKDAKENDVDLS-IFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGT   83 (170)
T ss_dssp             ----CCGGGCEEEBTTSCEEEGG-GGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSC
T ss_pred             CCCCccccceEEEcCCCCEecHH-HhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCC
Confidence            46899999999999999999999 899999999999 8999999999999999999999999999999985        5


Q ss_pred             hHHHHHHHH-HHHhcccCCeeEEEe--eCCcch
Q psy1172         225 VESHHDWIK-ALVRDCILGLLINLS--VDDFKE  254 (276)
Q Consensus       225 ~~~~~~~~~-~~~~~~~~~~~~~~l--~D~~~~  254 (276)
                      ++.+++|.+ ++      +++|+++  .|.++.
T Consensus        84 ~~~~~~~~~~~~------~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           84 NDQITDFVCTRF------KSEFPIFDKIDVNGE  110 (170)
T ss_dssp             HHHHHHHHHHHT------CCCSCBBCCCBSSST
T ss_pred             HHHHHHHHHHhc------CCCceeEeeeccCCC
Confidence            677777877 55      6678888  465544

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.77  E-value=8.9e-19  Score=149.87  Aligned_cols=97  Identities=11%  Similarity=0.011  Sum_probs=80.6

Q ss_pred             cccCCCCCcEEecCC-CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------C
Q psy1172         154 FAAALLPGCSLLGCQ-ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------S  224 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~-G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~  224 (276)
                      ..++.+|+|+|++.+ |+.++|+ +++||++||+|| ++|||+|+.++|.|++++++|+++|++||+||+|        +
T Consensus        21 ~~~~~~p~f~l~~~~~G~~v~l~-~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~   98 (208)
T 2f8a_A           21 QSMQSVYAFSARPLAGGEPVSLG-SLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAK   98 (208)
T ss_dssp             -CCCCGGGCEECBTTCSSCEEGG-GGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSC
T ss_pred             hhcCccCceEeeeCCCCCCccHH-HcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCC
Confidence            367889999999999 9999999 899999999999 9999999999999999999999999999999986        3


Q ss_pred             hHHHHHHHHHHHhcccCCeeEEEeeCCc
Q psy1172         225 VESHHDWIKALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~  252 (276)
                      ++.+++|++........+++||+++|.+
T Consensus        99 ~~~i~~f~~~~~~~~~~~~~fp~l~d~d  126 (208)
T 2f8a_A           99 NEEILNSLKYVRPGGGFEPNFMLFEKCE  126 (208)
T ss_dssp             HHHHHHHHHHTSSCTTCCCSSEEBCCCC
T ss_pred             HHHHHHHHHhcccccccccceEEEEEee
Confidence            5677777762110001177899997644

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.77  E-value=1.6e-18  Score=137.81  Aligned_cols=111  Identities=14%  Similarity=0.031  Sum_probs=93.7

Q ss_pred             cccccCCCCCcEEecCCCCeEEec-ccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHH-HhCCcEEEEEeCCC-hHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILE-CSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEF-EQRTCKVIALSCDS-VESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~-~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~-~~~gv~Vv~VS~D~-~~~~  228 (276)
                      .+.+|+++|+|++++.+|+.++++ ++++||++||+|| ++|||+|+.+++.|.+++++| .++|+.|++|++|. .+..
T Consensus         4 ~~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~   82 (148)
T 3fkf_A            4 KVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAW   82 (148)
T ss_dssp             -CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHH
T ss_pred             cccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHH
Confidence            457899999999999999999886 2479999999999 999999999999999999999 88899999999985 4566


Q ss_pred             HHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         229 HDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      +++.+.+      +++|+++.|.......+++.||+..-++
T Consensus        83 ~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~v~~~P~  117 (148)
T 3fkf_A           83 ETAIKKD------TLSWDQVCDFTGLSSETAKQYAILTLPT  117 (148)
T ss_dssp             HHHHHHT------TCCSEEECCSCGGGCHHHHHTTCCSSSE
T ss_pred             HHHHHHc------CCCceEEEccCCcchHHHHhcCCCCcCE
Confidence            7777666      7899999987554556788899864443

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.77  E-value=2.7e-18  Score=139.33  Aligned_cols=103  Identities=17%  Similarity=0.229  Sum_probs=87.9

Q ss_pred             CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcc-cHHHHHHHHHHHHHHHh----CCcEEEEEeCCC----hHHH
Q psy1172         158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPV-CTTELARVLQLIKEFEQ----RTCKVIALSCDS----VESH  228 (276)
Q Consensus       158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~-C~~el~~l~~~~~~~~~----~gv~Vv~VS~D~----~~~~  228 (276)
                      .+|+|+|++.+|+.++++ +++||++||+|| ++|||+ |..+++.|++++++|++    .+++|++||+|+    ++.+
T Consensus         2 ~ap~f~l~~~~G~~~~l~-~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~   79 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDK-DYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAI   79 (164)
T ss_dssp             CCCCCEEEETTSCEEEGG-GGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHH
T ss_pred             CCCCeEEEeCCCCEEeHH-HcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHH
Confidence            589999999999999999 899999999999 899998 99999999999999987    489999999985    5677


Q ss_pred             HHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         229 HDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ++|.+++      +++|+++.+.......+++.||+...+
T Consensus        80 ~~~~~~~------~~~~~~l~~~~d~~~~~~~~~~v~~~p  113 (164)
T 2ggt_A           80 ANYVKEF------SPKLVGLTGTREEVDQVARAYRVYYSP  113 (164)
T ss_dssp             HHHHHTT------CSSCEEEECCHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHc------CCCeEEEeCCHHHHHHHHHhcCeEEEe
Confidence            7777776      778888865433445678899986543

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.77  E-value=1.3e-18  Score=139.72  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=91.2

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDWIK  233 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~~~  233 (276)
                      +|+.+|+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.|+++++++.++++.|++|+.| +++..++|.+
T Consensus         2 ~G~~~p~~~l~~~~g~~~~l~-~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~   79 (151)
T 2f9s_A            2 EGSDAPNFVLEDTNGKRIELS-DLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMK   79 (151)
T ss_dssp             CCEECCCCEEECTTCCEEEGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHH
T ss_pred             CCCcCCcceeEcCCCCEEEHH-HcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHH
Confidence            689999999999999999999 889999999999 9999999999999999999999889999999996 5677888888


Q ss_pred             HHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         234 ALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       234 ~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ++      +++|+++.|.+..   +++.||+..-+
T Consensus        80 ~~------~~~~~~~~d~~~~---~~~~~~v~~~P  105 (151)
T 2f9s_A           80 SY------GVNFPVVLDTDRQ---VLDAYDVSPLP  105 (151)
T ss_dssp             HH------TCCSCEEEETTSH---HHHHTTCCSSC
T ss_pred             Hc------CCCceEEECCchH---HHHhcCCCCCC
Confidence            88      7789999886543   57788875433

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.76  E-value=9.8e-19  Score=149.70  Aligned_cols=89  Identities=7%  Similarity=0.078  Sum_probs=78.2

Q ss_pred             ccCCCCCcEEecCC-CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------Ch
Q psy1172         155 AAALLPGCSLLGCQ-ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SV  225 (276)
Q Consensus       155 ~G~~aPdF~L~~~~-G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~  225 (276)
                      ..+.+|+|+|++.+ |+.++|+ +|+||++||+|| ++|||+| .|+|.|++++++|+++|++||+||.|        ++
T Consensus        13 ~~~~~pdF~l~d~~~G~~v~Ls-~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~   89 (207)
T 2r37_A           13 ISGTIYEYGALTIDGEEYIPFK-QYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGEN   89 (207)
T ss_dssp             --CCGGGCEEEBTTSSCEEEGG-GGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCH
T ss_pred             ccCccCCeEeeeCCCCCEEcHH-HhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCH
Confidence            45679999999999 9999999 899999999999 9999999 79999999999999999999999964        45


Q ss_pred             HHHHHHHH------HHHhcccCCeeEEEeeCCc
Q psy1172         226 ESHHDWIK------ALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       226 ~~~~~~~~------~~~~~~~~~~~~~~l~D~~  252 (276)
                      +.+++|++      ++      +++||+++|.+
T Consensus        90 ~~i~~f~~~~~~~~~~------~~~fp~l~d~d  116 (207)
T 2r37_A           90 SEILPTLKYVRPGGGF------VPNFQLFEKGD  116 (207)
T ss_dssp             HHHHHHHHHTSSCTTC------CCSSEEBCCCC
T ss_pred             HHHHHHHHhcchhhcc------CccceeeeEec
Confidence            67788887      55      77899997654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.76  E-value=1.2e-18  Score=145.96  Aligned_cols=106  Identities=14%  Similarity=0.197  Sum_probs=93.0

Q ss_pred             cccccCCCCCcEEe-cCCCCeEEecccCCCCe-EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC-------
Q psy1172         152 DRFAAALLPGCSLL-GCQASLVILECSIPAFW-GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC-------  222 (276)
Q Consensus       152 ~~~~G~~aPdF~L~-~~~G~~v~l~~~~~gk~-vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~-------  222 (276)
                      .+.+|+.+|+|+|+ +.+|+.++|+ +++||+ +||+|| ++|||+|+.+++.|++++++|.++++.|++|+.       
T Consensus        17 ~~~~g~~~p~f~l~~~~~G~~~~l~-~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~   94 (196)
T 2ywi_A           17 MFPLGKQAPPFALTNVIDGNVVRLE-DVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYP   94 (196)
T ss_dssp             CCCTTCBCCCCEEEETTTCCEEEHH-HHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCG
T ss_pred             CCCcCCcCCceeeeecCCCCEEeHH-HhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence            45789999999999 9999999999 899985 999999 999999999999999999999999999999999       


Q ss_pred             -CChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         223 -DSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       223 -D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                       |+++.+++|.+++      +++|+++.|.+..   +++.||+..-+
T Consensus        95 ~d~~~~~~~~~~~~------~~~~~~~~d~~~~---~~~~~~v~~~P  132 (196)
T 2ywi_A           95 EDSPENMKKVAEEL------GYPFPYLYDETQE---VAKAYDAACTP  132 (196)
T ss_dssp             GGSHHHHHHHHHHH------TCCSCEEECSSCH---HHHHHTCCEES
T ss_pred             ccCHHHHHHHHHHc------CCCceEEECCchH---HHHHhCCCCCC
Confidence             5677888888888      7789999986554   57788875443

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.76  E-value=5.1e-19  Score=143.10  Aligned_cols=107  Identities=13%  Similarity=0.181  Sum_probs=92.7

Q ss_pred             cccCCCCCcEEec-CCCCeEEecccCCCCeEEEEEEcCCCCcccHHH-HHHHHHHHHHHHhCCcEEEEEeC-------CC
Q psy1172         154 FAAALLPGCSLLG-CQASLVILECSIPAFWGILFSHPSDFTPVCTTE-LARVLQLIKEFEQRTCKVIALSC-------DS  224 (276)
Q Consensus       154 ~~G~~aPdF~L~~-~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~e-l~~l~~~~~~~~~~gv~Vv~VS~-------D~  224 (276)
                      ..|.++|+|++++ .+|+.++|+ +++||++||+|| ++|||+|..| ++.|++++++|+++|+.|++||+       |+
T Consensus         4 ~~g~~~p~~~~~~~~~g~~~~l~-~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~   81 (160)
T 3lor_A            4 LDNAPLLELDVQEWVNHEGLSNE-DLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMT   81 (160)
T ss_dssp             CTTCCBCCCCEEEESSSCCCCHH-HHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred             cCCCcCCCcccccccCCCccCHH-HhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCC
Confidence            3689999999999 899999999 899999999999 8999999997 99999999999999999999998       57


Q ss_pred             hHHHHHHHHHHHhcccCCeeEEEeeCCcchhh---hhhhhccccccc
Q psy1172         225 VESHHDWIKALVRDCILGLLINLSVDDFKEVE---GRSRRFQESLNT  268 (276)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~---~~a~~ygv~~~~  268 (276)
                      ++..++|.+++      +++|+++.|......   .+++.||+..-+
T Consensus        82 ~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P  122 (160)
T 3lor_A           82 PEALKVFIDEF------GIKFPVAVDMPREGQRIPSTMKKYRLEGTP  122 (160)
T ss_dssp             HHHHHHHHHHT------TCCSCEEEECCCTTCSSCHHHHHTTCCSSS
T ss_pred             HHHHHHHHHHc------CCCCcEEECCccccchhhhHHHhcccCccc
Confidence            78888888888      788999988766411   257788876444

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.75  E-value=2.7e-18  Score=145.49  Aligned_cols=105  Identities=14%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             ccccCCC--CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcc-cHHHHHHHHHHHHHHHhC---CcEEEEEeCC---
Q psy1172         153 RFAAALL--PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPV-CTTELARVLQLIKEFEQR---TCKVIALSCD---  223 (276)
Q Consensus       153 ~~~G~~a--PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~-C~~el~~l~~~~~~~~~~---gv~Vv~VS~D---  223 (276)
                      ..+|+++  |+|+|++.+|+.++++ +++||++||+|| ++|||+ |..+++.|+++++++.++   +++||+||+|   
T Consensus        13 ~~~g~~~~~p~f~l~d~~G~~v~l~-~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~   90 (200)
T 2b7k_A           13 RGYGKPSLGGPFHLEDMYGNEFTEK-NLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPAR   90 (200)
T ss_dssp             ---CCCCCCCCCEEEETTSCEEEGG-GGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTT
T ss_pred             hccCCCCcCCCEEEEcCCCCEEeHH-HcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCC
Confidence            3578886  9999999999999999 899999999999 999997 999999999999999864   8999999998   


Q ss_pred             -ChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccc
Q psy1172         224 -SVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       224 -~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                       +++.+++|.+++      +.+|+++.+.......+++.||+.
T Consensus        91 d~~~~~~~~~~~~------~~~~~~l~~~~d~~~~~~~~~gv~  127 (200)
T 2b7k_A           91 DSPAVLKEYLSDF------HPSILGLTGTFDEVKNACKKYRVY  127 (200)
T ss_dssp             CCHHHHHHHHTTS------CTTCEEEECCHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHc------CCCceEEeCCHHHHHHHHHHcCcE
Confidence             567777777766      667887776544556678899987

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.75  E-value=1.2e-18  Score=149.44  Aligned_cols=93  Identities=20%  Similarity=0.338  Sum_probs=83.8

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVA   97 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~   97 (276)
                      +++||+++|++++++++||+..+ .    |.  +.|++||||++|+|++.+.++...+|+.+|+++.|++||.++++++.
T Consensus       115 ~~~fp~l~D~~~~~~~~ygv~~~-~----g~--~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~~~~~~~~~  187 (213)
T 2i81_A          115 NIKHTLLSDITKSISKDYNVLFD-D----SV--SLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDV  187 (213)
T ss_dssp             SCSSEEEECTTSHHHHHTTCEET-T----TE--ECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHCCB
T ss_pred             CCCceEEECCchHHHHHhCCccc-c----CC--cccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhhhhcCCC
Confidence            79999999999999999999752 1    43  57999999999999999998888999999999999999999999999


Q ss_pred             cCCCCCCCCceeeCCCCCch
Q psy1172          98 TPVDWKVGMEIEVRPGLVSK  117 (276)
Q Consensus        98 ~p~~w~~g~~~~~~p~~~~~  117 (276)
                      ||+||++|+++|++++.+.+
T Consensus       188 cp~~w~~g~~~~~~~~~~~~  207 (213)
T 2i81_A          188 CPANWQKGKVSMKPSEEGVA  207 (213)
T ss_dssp             CCTTCCTTSCCBCSSTTTHH
T ss_pred             cCCCCCcCCccccCCchhHH
Confidence            99999999999988765543

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.75  E-value=1.1e-18  Score=147.89  Aligned_cols=95  Identities=29%  Similarity=0.549  Sum_probs=85.0

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVA   97 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~   97 (276)
                      +++||+++|.+++++++||+.....    |.  ..|++||||++|+|++.+.++...+++.+|+++.|++||.++++++.
T Consensus        99 ~~~~p~l~D~~~~~~~~ygv~~~~~----g~--~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~~~~~~~~~  172 (202)
T 1uul_A           99 QMNIPILADKTKCIMKSYGVLKEED----GV--AYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEV  172 (202)
T ss_dssp             SCSSCEEECTTCHHHHHHTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHSCB
T ss_pred             CCceeEEECCchHHHHHcCCccCCC----Cc--eeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhhhhhhcCCc
Confidence            7999999999999999999975542    43  56999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCceeeCCCCCchh
Q psy1172          98 TPVDWKVGMEIEVRPGLVSKD  118 (276)
Q Consensus        98 ~p~~w~~g~~~~~~p~~~~~~  118 (276)
                      ||+||++|+++|++++.+.++
T Consensus       173 ~p~~w~~g~~~~~~~~~~~~~  193 (202)
T 1uul_A          173 CPANWKPGDKTMKPDPEKSKE  193 (202)
T ss_dssp             BCTTCCTTSCCBCSSTGGGHH
T ss_pred             cCCCcCCCCceeccChhhHHH
Confidence            999999999999887655443

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.75  E-value=4.1e-18  Score=136.68  Aligned_cols=104  Identities=17%  Similarity=0.304  Sum_probs=90.8

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--CChHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--DSVESHHD  230 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--D~~~~~~~  230 (276)
                      ..+|+.+|+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.|+++++++.++++.|++|+.  |+.+..++
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~-~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~   79 (153)
T 2l5o_A            2 SLDSKTAPAFSLPDLHGKTVSNA-DLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQ   79 (153)
T ss_dssp             --CCTTCCSCEEECTTSCEEEHH-HHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHH
T ss_pred             CCCCCCCCCcEeecCCCCCccHH-HhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHH
Confidence            45899999999999999999999 789999999999 999999999999999999999999999999995  67788888


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      |.+++      +++|+++.|....   +++.||+..-
T Consensus        80 ~~~~~------~~~~~~~~d~~~~---~~~~~~i~~~  107 (153)
T 2l5o_A           80 YVKDY------GLPFTVMYDADKA---VGQAFGTQVY  107 (153)
T ss_dssp             HHHHT------TCCSEEEECSSCH---HHHHHTCCSS
T ss_pred             HHHHc------CCCceEEcCchHH---HHHHcCCCcc
Confidence            88887      7789999886543   5778887543

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.8e-19  Score=147.26  Aligned_cols=89  Identities=8%  Similarity=0.094  Sum_probs=70.3

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------ChH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SVE  226 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~~  226 (276)
                      -|..+|+|+|+|.+|+.++|+ +++||++||+|| ++|||+|. ++|.|++++++|+++|++||+||+|        +++
T Consensus         8 ~~~~~~~f~l~d~~G~~~~l~-~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~   84 (171)
T 3cmi_A            8 HMSEFYKLAPVDKKGQPFPFD-QLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDE   84 (171)
T ss_dssp             --CGGGGCCCBBTTSCBCCGG-GGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC--------
T ss_pred             chhheeeeEEEcCCCCEecHH-HcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHH
Confidence            467899999999999999999 899999999999 99999999 9999999999999999999999984        556


Q ss_pred             HHHHHH-HHHHhcccCCeeEEEeeCCc
Q psy1172         227 SHHDWI-KALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       227 ~~~~~~-~~~~~~~~~~~~~~~l~D~~  252 (276)
                      .+++|. +++      +++|++++|.+
T Consensus        85 ~~~~~~~~~~------~~~~p~~~d~d  105 (171)
T 3cmi_A           85 EIAQFCQLNY------GVTFPIMKKID  105 (171)
T ss_dssp             ----------------CCCSCBBCCCB
T ss_pred             HHHHHHHhcc------CCCceEEeecc
Confidence            777777 676      77899998754

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.75  E-value=5.1e-18  Score=138.80  Aligned_cols=101  Identities=16%  Similarity=0.290  Sum_probs=87.7

Q ss_pred             CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcc-cHHHHHHHHHHHHHHHh----CCcEEEEEeCC----ChHHHHH
Q psy1172         160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPV-CTTELARVLQLIKEFEQ----RTCKVIALSCD----SVESHHD  230 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~-C~~el~~l~~~~~~~~~----~gv~Vv~VS~D----~~~~~~~  230 (276)
                      |+|+|++.+|+.++++ +++||++||+|| ++|||+ |+.+++.|++++++|++    .+++||+||+|    +++.+++
T Consensus         7 p~f~l~~~~G~~~~l~-~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~   84 (171)
T 2rli_A            7 GDFHLLDHRGRARCKA-DFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMAR   84 (171)
T ss_dssp             SCCEEEETTSCEEETT-TTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHH
T ss_pred             CCeEEEeCCCCEEeHH-HhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHH
Confidence            9999999999999999 899999999999 999998 99999999999999976    58999999997    4677777


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |.+++      +++|+++.+.......+++.||+...+
T Consensus        85 ~~~~~------~~~~~~l~~~~~~~~~~~~~~~v~~~p  116 (171)
T 2rli_A           85 YVQDF------HPRLLGLTGSTKQVAQASHSYRVYYNA  116 (171)
T ss_dssp             HHHTT------CTTCCEEECCHHHHHHHHHHSCCCCEE
T ss_pred             HHHHc------CCCeEEEeCCHHHHHHHHHHhCeEEEe
Confidence            77777      678888887655555678899987543

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.75  E-value=2.1e-18  Score=142.59  Aligned_cols=107  Identities=12%  Similarity=0.095  Sum_probs=86.1

Q ss_pred             cccCCCC-CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHHh--CCcEEEEEeCC---ChH
Q psy1172         154 FAAALLP-GCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFEQ--RTCKVIALSCD---SVE  226 (276)
Q Consensus       154 ~~G~~aP-dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~~--~gv~Vv~VS~D---~~~  226 (276)
                      .+|+++| +|+|++.+|+.++|+ +++||++||+|| ++||| +|..+++.|++++++|++  .+++||+||+|   +++
T Consensus         2 ~~G~~~P~~f~l~d~~G~~v~l~-~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~   79 (170)
T 3me7_A            2 SLGTYVPGDITLVDSYGNEFQLK-NLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLE   79 (170)
T ss_dssp             CTTCBCCTTCEEEETTCCEEEGG-GGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHH
T ss_pred             CCCCcCCCCeEEEcCCcCEEchH-HhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHH
Confidence            4799999 999999999999999 899999999999 99998 699999999999999975  56999999987   567


Q ss_pred             HHHHHHHHHHhcccCCe-eEEEee-CCcchhhhhhhhccccc
Q psy1172         227 SHHDWIKALVRDCILGL-LINLSV-DDFKEVEGRSRRFQESL  266 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~l~-D~~~~~~~~a~~ygv~~  266 (276)
                      .+++|++++    ++.. .++++. +......+++++||+..
T Consensus        80 ~~~~~~~~~----~~~~~~w~~l~~~~~~~~~~~~~~~g~~~  117 (170)
T 3me7_A           80 DIKRFQKEY----GIDGKGWKVVKAKTSEDLFKLLDAIDFRF  117 (170)
T ss_dssp             HHHHHHHHT----TCCSSSEEEEEESSHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHc----CCCCCCeEEEeCCCHHHHHHHHHHCCeEE
Confidence            777887777    2222 344433 32345566788888643

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.75  E-value=1.6e-18  Score=139.38  Aligned_cols=97  Identities=9%  Similarity=0.078  Sum_probs=84.9

Q ss_pred             CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHh
Q psy1172         158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR  237 (276)
Q Consensus       158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~  237 (276)
                      ++|+|++. .+|+.++|+ +++||++||+|| ++|||+|+.++|.|++++++|++.++.|++|++|+++..++|.+++  
T Consensus         4 pa~~~~~~-~~G~~~~l~-~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~--   78 (151)
T 3raz_A            4 SADELAGW-KDNTPQSLQ-SLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQT--   78 (151)
T ss_dssp             ---CEEET-TTCCEECGG-GCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHS--
T ss_pred             Ccchhhcc-cCCCEecHH-HhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHc--
Confidence            34555444 799999999 899999999999 9999999999999999999998899999999999999999998888  


Q ss_pred             cccCCeeEEEeeCCcchhhhhhhhcc
Q psy1172         238 DCILGLLINLSVDDFKEVEGRSRRFQ  263 (276)
Q Consensus       238 ~~~~~~~~~~l~D~~~~~~~~a~~yg  263 (276)
                          +++|+++.|.......+++.||
T Consensus        79 ----~~~~~~~~~~~~~~~~~~~~~~  100 (151)
T 3raz_A           79 ----PVSYPIWRYTGANSRNFMKTYG  100 (151)
T ss_dssp             ----CCSSCEEEECCSCHHHHHHTTT
T ss_pred             ----CCCCceEecCccchHHHHHHhC
Confidence                8889999887767667788898

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.74  E-value=3.6e-19  Score=149.22  Aligned_cols=91  Identities=9%  Similarity=0.071  Sum_probs=77.7

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------  223 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------  223 (276)
                      .+..++++|+|+|+|.+|+.++|+ +++||++||+|| ++|||+|..++|.|++++++|+++|++||+||+|        
T Consensus        19 ~~~~~~~~p~f~l~d~~G~~~~l~-~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~   96 (187)
T 3dwv_A           19 KMSAASSIFDFEVLDADHKPYNLV-QHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPG   96 (187)
T ss_dssp             -CTTCCSGGGSCCBBTTSCBCCGG-GGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSS
T ss_pred             hhcCCCccCCeEEEcCCCCEeeHH-HhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCC
Confidence            456789999999999999999999 899999999999 9999999999999999999999999999999987        


Q ss_pred             ChHHHHHHHH-HHHhcccCCeeEEEeeC
Q psy1172         224 SVESHHDWIK-ALVRDCILGLLINLSVD  250 (276)
Q Consensus       224 ~~~~~~~~~~-~~~~~~~~~~~~~~l~D  250 (276)
                      +++..++|.+ .+      +++|+++++
T Consensus        97 ~~~~~~~~~~~~~------~~~~p~~~~  118 (187)
T 3dwv_A           97 NEEEIKEFVCTKF------KAEFPIMAK  118 (187)
T ss_dssp             BTTHHHHSCCBCC------CCSSCBBCC
T ss_pred             CHHHHHHHHHhcc------CCCCceeec
Confidence            3444444443 23      667888863

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.74  E-value=4.6e-18  Score=134.50  Aligned_cols=106  Identities=14%  Similarity=0.172  Sum_probs=88.6

Q ss_pred             ccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC----ChH
Q psy1172         151 IDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD----SVE  226 (276)
Q Consensus       151 ~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D----~~~  226 (276)
                      ..+.+|+.+|+|++++.+|+.++++ + +||++||+|| ++|||+|+.+++.|+++++++.+.++.|++|+.|    +++
T Consensus         7 ~~~~~g~~~p~~~l~~~~g~~~~l~-~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~   83 (145)
T 3erw_A            7 AEEKQPAVPAVFLMKTIEGEDISIP-N-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQ   83 (145)
T ss_dssp             -----CCSCCEEEEECTTSCEEEES-C-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHH
T ss_pred             ccccCCCcCCCceeecCCCCEEeHH-H-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHH
Confidence            3456899999999999999999999 6 9999999999 9999999999999999999998789999999996    566


Q ss_pred             HHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         227 SHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ..++|.+.+      +++|+++.|....   +++.|++..-+
T Consensus        84 ~~~~~~~~~------~~~~~~~~d~~~~---~~~~~~v~~~P  116 (145)
T 3erw_A           84 VVEDFIKAN------KLTFPIVLDSKGE---LMKEYHIITIP  116 (145)
T ss_dssp             HHHHHHHHT------TCCSCEEECSSSH---HHHHTTCCEES
T ss_pred             HHHHHHHHc------CCceeEEEcCchh---HHHhcCcCccC
Confidence            777777777      7789999886554   57788875443

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.74  E-value=9.7e-18  Score=136.01  Aligned_cols=100  Identities=14%  Similarity=0.239  Sum_probs=88.7

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHD  230 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~  230 (276)
                      ++.+|+++|+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.|++++++|.++++.+++|+.|+ ++..++
T Consensus         7 ~~~~g~~~p~~~l~~~~g~~~~l~-~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~   84 (165)
T 3or5_A            7 ADARPTPAPSFSGVTVDGKPFSSA-SLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKN   84 (165)
T ss_dssp             CCCCCCBCCCCEEECTTSCEEEGG-GGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHH
T ss_pred             hhcCCCCCCCceeeCCCCCEechh-HcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence            457899999999999999999999 899999999999 99999999999999999999999999999999985 677788


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcc
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQ  263 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~yg  263 (276)
                      |.+++      +++|+++.|..    +.++.|+
T Consensus        85 ~~~~~------~~~~~~~~~~~----~~~~~~~  107 (165)
T 3or5_A           85 YMKTQ------GIIYPVMMATP----ELIRAFN  107 (165)
T ss_dssp             HHHHH------TCCSCEEECCH----HHHHHHH
T ss_pred             HHHHc------CCCCceEecCH----HHHHHHh
Confidence            88888      77889888753    3566663

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.74  E-value=2.4e-18  Score=139.63  Aligned_cols=105  Identities=15%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             ccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         151 IDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       151 ~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      ..+.+|+.+|+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.|++++++|.+.++.+++|+.|+  ..++
T Consensus        13 ~~~~~G~~~p~f~l~~~~g~~~~l~-~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~~~~   88 (158)
T 3hdc_A           13 PLVRTGALAPNFKLPTLSGENKSLA-QYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--RFPE   88 (158)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEESG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--SCCG
T ss_pred             cccCCCCcCCCceeEcCCCCEEehH-HhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--HHHH
Confidence            3457899999999999999999999 899999999999 99999999999999999999988899999999987  3445


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |.+.+      +++|+++.|.+..   +++.||+..-+
T Consensus        89 ~~~~~------~~~~~~~~d~~~~---~~~~~~v~~~P  117 (158)
T 3hdc_A           89 KYRRA------PVSFNFLSDATGQ---VQQRYGANRLP  117 (158)
T ss_dssp             GGGGC------CCSCEEEECTTSH---HHHHTTCCSSS
T ss_pred             HHHHc------CCCceEEECchHH---HHHHhCCCCcc
Confidence            55555      7789999986553   67788876443

>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*

Probab=99.73  E-value=3.3e-18  Score=144.38  Aligned_cols=92  Identities=33%  Similarity=0.482  Sum_probs=82.7

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVA   97 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~   97 (276)
                      +++||+++|.++++++.||+.....    |.  ..|++||||++|+|++.+.++...+++.+|+++.|++||..+++++.
T Consensus        97 ~~~~p~l~D~~~~~~~~~gv~~~~~----~~--~~P~~~lid~~G~i~~~~~g~~~~~~~~~e~l~~l~~l~~~~~~~~~  170 (197)
T 1qmv_A           97 PLNIPLLADVTRRLSEDYGVLKTDE----GI--AYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEV  170 (197)
T ss_dssp             SCSSCEEECTTCHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHCCB
T ss_pred             CCceEEEECCcHHHHHHcCCccCCC----Cc--eeeEEEEECCCCcEEEEEeCCCCCCCCHHHHHHHHHhcchhhccCCc
Confidence            7999999999999999999975432    33  46999999999999999998888899999999999999988889999


Q ss_pred             cCCCCCCCCceeeCCCCC
Q psy1172          98 TPVDWKVGMEIEVRPGLV  115 (276)
Q Consensus        98 ~p~~w~~g~~~~~~p~~~  115 (276)
                      ||+||++|+++|++|+.+
T Consensus       171 cp~~w~~g~~~~~~~~~~  188 (197)
T 1qmv_A          171 CPAGWKPGSDTIKPNVDD  188 (197)
T ss_dssp             BCTTCCTTSCCBCSSHHH
T ss_pred             cCCCcCcCCccccCCccc
Confidence            999999999999887543

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.73  E-value=9e-18  Score=139.30  Aligned_cols=104  Identities=12%  Similarity=0.114  Sum_probs=86.9

Q ss_pred             cccccccCCCCCcEEecCCC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC-CChH
Q psy1172         150 LIDRFAAALLPGCSLLGCQA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC-DSVE  226 (276)
Q Consensus       150 ~~~~~~G~~aPdF~L~~~~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~-D~~~  226 (276)
                      ...+.+|+++|+|+|++.+|  +.++++ +++||++||+|| ++|||+|..+++.|++++++    |+.|++||+ |+++
T Consensus        27 ~~~~~~G~~~P~f~l~~~~g~~~~~~l~-~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~~~  100 (176)
T 3kh7_A           27 LPSALIGKPFPAFDLPSVQDPARRLTEA-DLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDDNA  100 (176)
T ss_dssp             STTTTTTSBCCCCEEEBSSCTTSEEEGG-GGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCCHH
T ss_pred             ccccccCCcCCCcEecccCCCCceecHH-HhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCCHH
Confidence            34567999999999999999  789998 899999999999 99999999999999998775    899999996 5778


Q ss_pred             HHHHHHHHHHhcccCCeeEE-EeeCCcchhhhhhhhccccccc
Q psy1172         227 SHHDWIKALVRDCILGLLIN-LSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ..++|.+++      +++|+ ++.|.+.   .+++.||+..-+
T Consensus       101 ~~~~~~~~~------~~~~~~~~~d~~~---~~~~~~~v~~~P  134 (176)
T 3kh7_A          101 AAIKWLNEL------HNPYLLSISDADG---TLGLDLGVYGAP  134 (176)
T ss_dssp             HHHHHHHHT------TCCCSEEEEETTC---HHHHHHTCCSSC
T ss_pred             HHHHHHHHc------CCCCceEEECCcc---hHHHHcCCCCCC
Confidence            888888887      66666 4667554   467788886433

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.72  E-value=8e-18  Score=135.30  Aligned_cols=105  Identities=17%  Similarity=0.198  Sum_probs=90.5

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC---CChHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC---DSVESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~---D~~~~~  228 (276)
                      ++.+|+++|+|++++.+|+.++++ +++ |++||+|| ++||++|..+++.|+++++++   +++|++|++   |+++..
T Consensus         4 ~l~~g~~~p~f~l~~~~g~~~~l~-~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~~~   77 (154)
T 3ia1_A            4 AVKPGEPLPDFLLLDPKGQPVTPA-TVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTREVV   77 (154)
T ss_dssp             CCCSBEECCCCCEECTTSCEECTT-TSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHHHH
T ss_pred             cCCCCCcCCceEEECCCCCEechH-HcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHHHH
Confidence            567999999999999999999999 788 99999999 999999999999999999999   899999999   566777


Q ss_pred             HHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         229 HDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ++|.+++      +++|+++.|.......+++.||+..-+
T Consensus        78 ~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~v~~~P  111 (154)
T 3ia1_A           78 LEYMKTY------PRFIPLLASDRDRPHEVAARFKVLGQP  111 (154)
T ss_dssp             HHHHTTC------TTEEECBCCSSCCHHHHHTTSSBCSSC
T ss_pred             HHHHHHc------CCCcccccccccchHHHHHHhCCCccc
Confidence            7776666      779999988444555678889986443

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.72  E-value=5.2e-18  Score=138.27  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=91.0

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC---------
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD---------  223 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D---------  223 (276)
                      +.+|+.+|+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.|.+++++|.  ++.|++|+.|         
T Consensus        11 ~~~g~~~p~~~l~~~~g~~~~l~-~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~   86 (165)
T 3ha9_A           11 EEVLEREASFSLTTIDGEVISLN-NVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALG   86 (165)
T ss_dssp             HHHHHHHHCCCEEBTTSCEECGG-GCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHT
T ss_pred             ccccCcCCCCEeecCCCCEeeHH-HhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccc
Confidence            46899999999999999999999 899999999999 9999999999999999999997  8999999997         


Q ss_pred             ----------ChHHHHHHHHHHHhcccCCe-eEEEeeCCcchhhhhhhhcccccccC
Q psy1172         224 ----------SVESHHDWIKALVRDCILGL-LINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       224 ----------~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                                +.+..++|.+.+      ++ +|+++.| +.   .+++.||+..-++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d-~~---~~~~~~~v~~~P~  133 (165)
T 3ha9_A           87 LNKPGYPPPDTPEMFRKFIANY------GDPSWIMVMD-DG---SLVEKFNVRSIDY  133 (165)
T ss_dssp             CCSTTSCCCCCHHHHHHHHHHH------SCTTSEEEEC-CS---HHHHHTTCCSSSE
T ss_pred             cccccCCCCCCHHHHHHHHHHc------CCCCeeEEeC-hH---HHHHHhCCCCceE
Confidence                      677888888888      77 8999988 44   4678888865443

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.71  E-value=6.6e-18  Score=141.80  Aligned_cols=93  Identities=27%  Similarity=0.393  Sum_probs=74.6

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      .+++||+++|++++++++||+..+ .    |+  ..|++||||++|+|++.+.++...+++.+|+++.|++|+.++++++
T Consensus        93 ~~~~~~~l~D~~~~~~~~~gv~~~-~----g~--~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~  165 (192)
T 2h01_A           93 GNIKHTLISDISKSIARSYDVLFN-E----SV--ALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGD  165 (192)
T ss_dssp             CSCSSEEEECTTSHHHHHTTCEET-T----TE--ECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCcCeEECCcHHHHHHhCCcCc-C----Cc--eeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHhhhhhcCC
Confidence            379999999999999999999752 1    43  4689999999999999999888889999999999999999999999


Q ss_pred             CcCCCCCCCCceeeCCCCCc
Q psy1172          97 ATPVDWKVGMEIEVRPGLVS  116 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p~~~~  116 (276)
                      .||+||++|+++|++++...
T Consensus       166 ~cp~~w~~~~~~~~~~~~~~  185 (192)
T 2h01_A          166 VCPANWQKGKESMKPSEEGV  185 (192)
T ss_dssp             CCCSSCCCC-----------
T ss_pred             CccCCCCCCCccccCCchhh
Confidence            99999999999998875443

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.71  E-value=1e-17  Score=152.60  Aligned_cols=123  Identities=19%  Similarity=0.289  Sum_probs=105.9

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      ++++||||+|++++++++||++..      |  .+.|+|||||++|+|+++|. ++++++|++|||+.|++|+ .+++.+
T Consensus        75 ~~l~fp~l~D~~~~v~~~ygv~~~------~--~~~r~tfiId~~G~i~~~~~-~v~~~~h~~~~l~~~~~~~-~~~~~~  144 (322)
T 4eo3_A           75 NDLKVTLLSDPEGILHEFFNVLEN------G--KTVRSTFLIDRWGFVRKEWR-RVKVEGHVQEVKEALDRLI-EEDLSL  144 (322)
T ss_dssp             HTCCSEEEECTTCHHHHHTTCEET------T--EECCEEEEECTTSBEEEEEE-SCCSTTHHHHHHHHHHHHH-HHHTSC
T ss_pred             hCCceEEEEcCchHHHHhcCCCCC------C--cCccEEEEECCCCEEEEEEe-CCCccccHHHHHHHHhhhc-hhhhHH
Confidence            459999999999999999999843      2  26799999999999999996 8999999999999999998 467889


Q ss_pred             CcCCCCCCCCceeeCCCCCchhhhccC----------CCCCceeeeeechhhhchhcccCCCC
Q psy1172          97 ATPVDWKVGMEIEVRPGLVSKDSEGKL----------TCKPIFSRIVSLFAEQNELQFAVPGG  149 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p~~~~~~~~~~~----------~~~~w~~~~~~~~~~~~~~~~a~~~~  149 (276)
                      ....+|+.-=+-+-+-+++.|+.++.+          +.|||.|.+++.......+..+.+.+
T Consensus       145 ~~~I~~RRSiR~F~~~~V~~e~l~~ileaA~~APS~~N~Qpwrfivv~d~e~~~~l~~~~~~~  207 (322)
T 4eo3_A          145 NKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHEALPGG  207 (322)
T ss_dssp             CHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHTSCCGGGCCCCEEEEECCHHHHHHHHTTSCGG
T ss_pred             HHHHHhhhccCCcCccccCHHHHHHHHHHHHhCcCcCCCcCeEEEEEeCHHHHHHHHHhhhhc
Confidence            999999998888888889999887654          78999999998887777776655443

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.71  E-value=6.3e-17  Score=129.59  Aligned_cols=105  Identities=13%  Similarity=0.146  Sum_probs=88.5

Q ss_pred             ccccCCCC-CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHH
Q psy1172         153 RFAAALLP-GCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHD  230 (276)
Q Consensus       153 ~~~G~~aP-dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~  230 (276)
                      +.+|+++| +|++++.+|+.++++ +++||++||+|| ++|||+|+.+++.|+++++++.++++.|++|+.|+ .+..++
T Consensus         3 l~~G~~~p~~f~l~~~~g~~~~l~-~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~   80 (152)
T 2lja_A            3 LRSGNPSAASFSYPDINGKTVSLA-DLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWEN   80 (152)
T ss_dssp             TTTTCCCSSSCEEEETTTEEEEST-TTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHH
T ss_pred             cccCCCCCcccEeecCCCCEeeHH-HcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHH
Confidence            46899999 999999999999999 899999999999 99999999999999999999998899999999986 456677


Q ss_pred             HHHHHHhcccCCee-EEEeeCCcchhhhhhhhccccccc
Q psy1172         231 WIKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       231 ~~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |.+++      +++ ++++.|.+.   .+++.||+..-+
T Consensus        81 ~~~~~------~~~~~~~~~d~~~---~~~~~~~v~~~P  110 (152)
T 2lja_A           81 MVTKD------QLKGIQLHMGTDR---TFMDAYLINGIP  110 (152)
T ss_dssp             HHHHH------TCCSEEEECSSCT---HHHHHTTCCSSC
T ss_pred             HHHhc------CCCCceeecCcch---hHHHHcCcCCCC
Confidence            77777      444 567766543   457788875433

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.71  E-value=5.9e-17  Score=134.07  Aligned_cols=94  Identities=14%  Similarity=0.027  Sum_probs=78.5

Q ss_pred             cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHHhCC--cEEEEEeCC----ChH
Q psy1172         154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFEQRT--CKVIALSCD----SVE  226 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D----~~~  226 (276)
                      .+|.++|+|+|+|.+|++++|+ +|+||++||+|| .+||| +|..+++.|.++++.+++.|  +++|+||+|    +++
T Consensus         7 P~~~~~PdF~L~d~~G~~v~l~-d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~   84 (170)
T 4hde_A            7 PLNWDLETFQFTNQDGKPFGTK-DLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPE   84 (170)
T ss_dssp             CCCBCCCCCEEECTTSCEEEHH-HHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHH
T ss_pred             CCCCcCCCcEEECCCCCEEeHH-HhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHH
Confidence            4789999999999999999999 899999999999 99998 79999999999999997765  789999986    467


Q ss_pred             HHHHHHHHHHhcccCCeeEEEeeCCc
Q psy1172         227 SHHDWIKALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~l~D~~  252 (276)
                      .+++|++++...   ...+.++.+..
T Consensus        85 ~l~~y~~~~~~~---~~~~~~ltg~~  107 (170)
T 4hde_A           85 NLKAFIQKFTED---TSNWNLLTGYS  107 (170)
T ss_dssp             HHHHHHTTTCSC---CTTEEEEBCSC
T ss_pred             HHHHHHHHcCCC---CCCceecCccc
Confidence            777777776221   23477776644

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.70  E-value=3.5e-17  Score=137.19  Aligned_cols=89  Identities=24%  Similarity=0.432  Sum_probs=80.2

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccC-CC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTK-KV   96 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~-~~   96 (276)
                      +++||+++|++++++++||+.....    |+  +.|++||||++|+|++++.++...+++.+|+++.|++|+.++++ ++
T Consensus        90 ~~~fp~l~D~~~~~~~~ygv~~~~~----g~--~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~p~~  163 (186)
T 1n8j_A           90 KIKYAMIGDPTGALTRNFDNMREDE----GL--ADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGE  163 (186)
T ss_dssp             GCCSEEEECTTSHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHSTTC
T ss_pred             CCceeEEECCchHHHHHhCCccCCC----Cc--eeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHHHhhcCCC
Confidence            6999999999999999999975432    43  46999999999999999998888899999999999999999999 79


Q ss_pred             CcCCCCCCCCceeeCC
Q psy1172          97 ATPVDWKVGMEIEVRP  112 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p  112 (276)
                      +||+||++|+++++++
T Consensus       164 ~~p~~w~~~~~~~~~~  179 (186)
T 1n8j_A          164 VCPAKWKEGEATLAPS  179 (186)
T ss_dssp             BBCTTCCTTSCCBCCS
T ss_pred             ccCCCCCCCCccccCC
Confidence            9999999999999754

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.70  E-value=1.6e-17  Score=131.73  Aligned_cols=102  Identities=10%  Similarity=0.061  Sum_probs=88.4

Q ss_pred             cccCCCCCcEE--ecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC------Ch
Q psy1172         154 FAAALLPGCSL--LGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD------SV  225 (276)
Q Consensus       154 ~~G~~aPdF~L--~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D------~~  225 (276)
                      .+|+++|+|++  .+.+|+.++++ +++||++||+|| ++|||+|..+++.|++++++|.++ +.|++|+.|      ++
T Consensus         2 ~~g~~~P~f~~~~~~~~g~~~~~~-~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~~   78 (148)
T 2b5x_A            2 KLRQPMPELTGEKAWLNGEVTREQ-LIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLDP   78 (148)
T ss_dssp             CTTCBCCCCCCCSEEESCCCCHHH-HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSSH
T ss_pred             CCCCCCCCCccccccccCcccchh-hcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccCH
Confidence            57999999999  67899999998 889999999999 999999999999999999999877 999999987      56


Q ss_pred             HHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         226 ESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +..++|.+++      +++|+++.|....   +++.||+..-
T Consensus        79 ~~~~~~~~~~------~~~~~~~~d~~~~---~~~~~~v~~~  111 (148)
T 2b5x_A           79 GKIKETAAEH------DITQPIFVDSDHA---LTDAFENEYV  111 (148)
T ss_dssp             HHHHHHHHHT------TCCSCEEECSSCH---HHHHTCCCCS
T ss_pred             HHHHHHHHHc------CCCcceEECCchh---HHHHhCCCCC
Confidence            7777887777      7789998886544   5778887543

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=9.8e-19  Score=141.74  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=89.5

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHH-HHHHHH-hCCcEEEEEeCCCh-HHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQ-LIKEFE-QRTCKVIALSCDSV-ESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~-~~~~~~-~~gv~Vv~VS~D~~-~~~  228 (276)
                      .+.+|+.+|+|++++.+|+.++++ +++||++||+|| ++|||+|+.+++.|++ ++++++ +.++.|++|+.|+. +..
T Consensus         6 ~l~~g~~~p~f~l~~~~g~~~~l~-~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~   83 (159)
T 2ls5_A            6 IVRIGEMAPDFTITLTDGKQVTLS-SLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKV   83 (159)
Confidence            356899999999999999999999 899999999999 9999999999999998 999998 78999999999864 566


Q ss_pred             HHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccc
Q psy1172         229 HDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                      ++|.+++      +++|+++.|.+.   .+++.||+.
T Consensus        84 ~~~~~~~------~~~~~~~~d~~~---~~~~~~~~~  111 (159)
T 2ls5_A           84 LAFAKST------GVTYPLGLDPGA---DIFAKYALR  111 (159)
Confidence            7777777      778999988654   457788854

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.69  E-value=2.5e-17  Score=131.21  Aligned_cols=102  Identities=15%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             ccCCCCC-cEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCC-hHHHHHH
Q psy1172         155 AAALLPG-CSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDS-VESHHDW  231 (276)
Q Consensus       155 ~G~~aPd-F~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~-~~~~~~~  231 (276)
                      +|+.+|+ |+|++.+|+.++++ +++||++||+|| ++|||+|+.++|.|++++++|++ .+++|++|++|. .+..++|
T Consensus         3 ~~~~~P~~f~l~~~~g~~~~l~-~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~   80 (144)
T 1i5g_A            3 LKKFFPYSTNVLKGAAADIALP-SLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDY   80 (144)
T ss_dssp             TTTSCSSCSEEEETTEEEEEGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHH
T ss_pred             hhhhCCCceEEEcCCCCEecHH-HcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHH
Confidence            5789999 99999999999999 899999999999 89999999999999999999985 689999999984 5555555


Q ss_pred             HHHHHhcccCCe-eEEEeeCCcchhhhhhhhccccc
Q psy1172         232 IKALVRDCILGL-LINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       232 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      .+++      +. .++++.  ......+++.||+..
T Consensus        81 ~~~~------~~~~~~~~~--~d~~~~~~~~~~v~~  108 (144)
T 1i5g_A           81 YAKM------PWLALPFED--RKGMEFLTTGFDVKS  108 (144)
T ss_dssp             HTTC------SSEECCTTC--HHHHHHHHHHTTCCS
T ss_pred             HHhC------CccccccCc--hHHHHHHHHHcCCCC
Confidence            5544      32 344442  112335677888753

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.69  E-value=5.3e-17  Score=149.49  Aligned_cols=107  Identities=10%  Similarity=0.063  Sum_probs=93.4

Q ss_pred             ccccccCCCCCcE-----EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--
Q psy1172         151 IDRFAAALLPGCS-----LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--  223 (276)
Q Consensus       151 ~~~~~G~~aPdF~-----L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--  223 (276)
                      ..+.+|+++|+|+     |++.+|+.++|+ +++||++||+|| ++|||+|+.++|.|++++++|+++++.||+||.|  
T Consensus        49 ~~l~vG~~aPdF~~~~~wL~d~dG~~vsLs-dl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~  126 (352)
T 2hyx_A           49 AQLESCGTAPDLKGITGWLNTPGNKPIDLK-SLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEY  126 (352)
T ss_dssp             SSCCCCCBCCCCCSCCEEESSGGGCCCCGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSS
T ss_pred             cccCCCCcCCCccccccccCCCCCCEEcHH-HhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcc
Confidence            3467999999999     999999999999 899999999999 9999999999999999999999999999999985  


Q ss_pred             ----ChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         224 ----SVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       224 ----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                          +++..++|++++      +++|+++.|.+..   +++.|++..-+
T Consensus       127 ~~~d~~~~~~~~~~~~------~l~fpv~~D~~~~---l~~~ygV~~~P  166 (352)
T 2hyx_A          127 AFEKVPGNVAKGAANL------GISYPIALDNNYA---TWTNYRNRYWP  166 (352)
T ss_dssp             GGGGCHHHHHHHHHHH------TCCSCEEECTTSH---HHHHTTCCEES
T ss_pred             cccCCHHHHHHHHHHc------CCCccEEeCCcHH---HHHHcCCCccC
Confidence                467778888877      7889999886543   57788875443

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.68  E-value=3.3e-17  Score=141.46  Aligned_cols=91  Identities=24%  Similarity=0.431  Sum_probs=68.2

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVA   97 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~   97 (276)
                      +++||+++|++++++++||+. ...    |.  +.|++||||++|+|++.+.++...+++.+|+++.|++|+.++++++.
T Consensus       119 ~~~fp~l~D~~~~~~~~ygv~-~~~----g~--~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~~~~~~~~~  191 (221)
T 2c0d_A          119 NVEFTLVSDINKDISKNYNVL-YDN----SF--ALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEV  191 (221)
T ss_dssp             SCSSEEEECTTSHHHHHTTCE-ETT----TE--ECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCceEEEECCchHHHHHcCCc-ccC----CC--ccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhhhcCCCc
Confidence            689999999999999999997 432    42  46999999999999999998888889999999999999999999999


Q ss_pred             cCCCCCCCCceeeCCCCC
Q psy1172          98 TPVDWKVGMEIEVRPGLV  115 (276)
Q Consensus        98 ~p~~w~~g~~~~~~p~~~  115 (276)
                      ||+||++|+++|.+++.+
T Consensus       192 cp~~W~~g~~~~~~~~~~  209 (221)
T 2c0d_A          192 CPINWKKGQKAFKPTTES  209 (221)
T ss_dssp             CC----------------
T ss_pred             CCCCCCCCCccccCCcHH
Confidence            999999999999765444

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.68  E-value=1.2e-16  Score=125.08  Aligned_cols=98  Identities=10%  Similarity=0.082  Sum_probs=86.4

Q ss_pred             CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHH
Q psy1172         157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKAL  235 (276)
Q Consensus       157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~  235 (276)
                      ..+|+|++++.+|+.++++ +++||+++|+|| ++||++|..+++.|+++++++.  ++.+++|+.|+ ++..++|.+++
T Consensus         2 ~~~p~~~l~~~~g~~~~l~-~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~   77 (136)
T 1lu4_A            2 DERLQFTATTLSGAPFDGA-SLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKY   77 (136)
T ss_dssp             GGGGCCEEEBTTSCEEEGG-GGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHH
T ss_pred             CCCCCeEeecCCCCeecHH-HhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHHc
Confidence            3589999999999999999 889999999999 9999999999999999999986  89999999986 78888888888


Q ss_pred             HhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         236 VRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       236 ~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                            +++|+++.|.+..   +++.||+..-
T Consensus        78 ------~~~~~~~~d~~~~---~~~~~~i~~~  100 (136)
T 1lu4_A           78 ------NLNFTNLNDADGV---IWARYNVPWQ  100 (136)
T ss_dssp             ------TCCSEEEECTTSH---HHHHTTCCSS
T ss_pred             ------CCCceEEECCchh---HHHhcCCCCC
Confidence                  7789999986544   5777887543

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.68  E-value=7.9e-17  Score=138.85  Aligned_cols=91  Identities=32%  Similarity=0.576  Sum_probs=81.7

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      .+++||+++|+++++++.||+.....    |+  ..|++||||++|+|++.+..+...+++++++++.|++||.++++++
T Consensus       131 ~~~~~~~l~D~~~~~~~~ygv~~~~~----g~--~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l~~~~~~~~  204 (222)
T 3ztl_A          131 GHMKIPLLADRKQEISKAYGVFDEED----GN--AFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGE  204 (222)
T ss_dssp             CSCSSCEEECSSSHHHHHTTCBCTTT----SS--BCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             cccceeEEeCCchHHHHHcCCeecCC----CC--ccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhcccccCc
Confidence            47999999999999999999975542    43  4689999999999999999888899999999999999999999999


Q ss_pred             CcCCCCCCCCceeeCCC
Q psy1172          97 ATPVDWKVGMEIEVRPG  113 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p~  113 (276)
                      .||+||+||++++.||+
T Consensus       205 ~c~~~w~~~~~~~~~~~  221 (222)
T 3ztl_A          205 VCPVNWKRGQHGIKVNQ  221 (222)
T ss_dssp             BBCTTCCTTSCCBCC--
T ss_pred             cCCcCcCCCCccccCCC
Confidence            99999999999998875

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.67  E-value=1.5e-16  Score=124.13  Aligned_cols=99  Identities=12%  Similarity=0.073  Sum_probs=86.1

Q ss_pred             cCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHH
Q psy1172         156 AALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKA  234 (276)
Q Consensus       156 G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~  234 (276)
                      |..+|+|++++.+|+.++++ +++||+++|+|| ++|||+|..+++.|+++++++.  ++.+++|+.|+ .+..++|.++
T Consensus         2 ~~~~p~~~~~~~~g~~~~l~-~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~   77 (136)
T 1zzo_A            2 VPAQLQFSAKTLDGHDFHGE-SLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNK   77 (136)
T ss_dssp             CCGGGCCEEEBTTSCEEEGG-GGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHH
T ss_pred             CCCCCCcccccCCCCEeeHH-HhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHH
Confidence            67799999999999999999 789999999999 9999999999999999999986  89999999974 7777888877


Q ss_pred             HHhcccCCe-eEEEeeCCcchhhhhhhhcccccc
Q psy1172         235 LVRDCILGL-LINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       235 ~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      +      ++ +|+++.|.+.   .+++.||+..-
T Consensus        78 ~------~~~~~~~~~d~~~---~~~~~~~i~~~  102 (136)
T 1zzo_A           78 Y------PVKTFTQLADTDG---SVWANFGVTQQ  102 (136)
T ss_dssp             T------TCTTSEEEECTTC---HHHHHTTCCSS
T ss_pred             c------CCCceEEEEcCCc---HHHHHcCCCCC
Confidence            7      77 8999988654   35777887543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.66  E-value=9.5e-17  Score=128.27  Aligned_cols=101  Identities=14%  Similarity=0.255  Sum_probs=79.4

Q ss_pred             cccCCCCC-cEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCC-hHHHHH
Q psy1172         154 FAAALLPG-CSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDS-VESHHD  230 (276)
Q Consensus       154 ~~G~~aPd-F~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~-~~~~~~  230 (276)
                      .+|+.+|+ |+|++.+| .++++ +++||++||+|| ++|||+|+.++|.|++++++|++ .+++|++||+|. .+..++
T Consensus         3 ~~~~~~P~~f~l~~~~g-~~~l~-~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~   79 (146)
T 1o8x_A            3 GLDKYLPGIEKLRRGDG-EVEVK-SLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAG   79 (146)
T ss_dssp             CGGGTSTTCCEEEETTE-EEEGG-GGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHH
T ss_pred             chHhhCCCceEEEcCCC-CCcHH-HhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHH
Confidence            36899999 99999999 99999 899999999999 99999999999999999999984 789999999984 455555


Q ss_pred             HHHHHHhcccCC-eeEEEeeCCcchhhhhhhhcccc
Q psy1172         231 WIKALVRDCILG-LLINLSVDDFKEVEGRSRRFQES  265 (276)
Q Consensus       231 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~a~~ygv~  265 (276)
                      |.+++      + ..++++..  .....+++.||+.
T Consensus        80 ~~~~~------~~~~~~~~~~--d~~~~~~~~~~v~  107 (146)
T 1o8x_A           80 YFAKM------PWLAVPFAQS--EAVQKLSKHFNVE  107 (146)
T ss_dssp             HHTTC------SSEECCGGGH--HHHHHHHHHTTCC
T ss_pred             HHHHC------Cceeeccchh--hHHHHHHHHhCCC
Confidence            54443      3 23444421  1223457778774

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.66  E-value=2e-16  Score=129.11  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=84.1

Q ss_pred             ccccccCCCCCcEEecC--CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHH
Q psy1172         151 IDRFAAALLPGCSLLGC--QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVES  227 (276)
Q Consensus       151 ~~~~~G~~aPdF~L~~~--~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~  227 (276)
                      ..+.+|+.+|+|+|++.  +|+.+++++.++||++||+|| ++|||+|+.++|.|++++++    ++.|++|+.| +++.
T Consensus        20 ~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~~   94 (168)
T 2b1k_A           20 ESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQK   94 (168)
T ss_dssp             CCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHH
T ss_pred             cccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChHH
Confidence            34568999999999999  899998883359999999999 99999999999999988765    8999999975 5677


Q ss_pred             HHHHHHHHHhcccCCeeEE-EeeCCcchhhhhhhhccccccc
Q psy1172         228 HHDWIKALVRDCILGLLIN-LSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .++|.+++      +++|+ ++.|...   .+++.||+..-+
T Consensus        95 ~~~~~~~~------~~~~~~~~~d~~~---~~~~~~~v~~~P  127 (168)
T 2b1k_A           95 AISWLKEL------GNPYALSLFDGDG---MLGLDLGVYGAP  127 (168)
T ss_dssp             HHHHHHHH------CCCCSEEEEETTC---HHHHHHTCCSSS
T ss_pred             HHHHHHHc------CCCCceeeECcch---HHHHHcCccccC
Confidence            88888887      66666 4556543   457788876443

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.64  E-value=6.2e-17  Score=132.92  Aligned_cols=104  Identities=13%  Similarity=0.180  Sum_probs=81.2

Q ss_pred             cccccCCCCCc-EEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCCh-HHH
Q psy1172         152 DRFAAALLPGC-SLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDSV-ESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF-~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~~-~~~  228 (276)
                      +..+|+.+|+| +|++.+| .++|+ +++||++||+|| ++|||+|+.++|.|++++++|++ +++.||+|++|.. +..
T Consensus        21 ~~~vG~~~P~f~~l~~~~g-~v~l~-~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~   97 (165)
T 3s9f_A           21 MSGVAKHLGEALKLRKQAD-TADMD-SLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDF   97 (165)
T ss_dssp             -CHHHHHHHHTSCEEETTE-EECSG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHH
T ss_pred             hhhhcccCCcceeeecCCC-cccHH-HcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHH
Confidence            44689999999 9999999 99999 899999999999 99999999999999999999986 7899999999854 444


Q ss_pred             HHHHHHHHhcccCC-eeEEEeeCCcchhhhhhhhccccc
Q psy1172         229 HDWIKALVRDCILG-LLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       229 ~~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      ++|.+++      + ..+++..  +.....+++.||+..
T Consensus        98 ~~~~~~~------~~~~~~~~~--~~~~~~l~~~~~v~~  128 (165)
T 3s9f_A           98 NAYYAKM------PWLSIPFAN--RNIVEALTKKYSVES  128 (165)
T ss_dssp             HHHHTTC------SSEECCTTC--HHHHHHHHHHTTCCS
T ss_pred             HHHHHhC------CCcccccCc--hhHHHHHHHHcCCCC
Confidence            4444433      2 2344332  222245688888753

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.64  E-value=3.1e-16  Score=122.11  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=80.8

Q ss_pred             CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe------CCChHHHHHH
Q psy1172         158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS------CDSVESHHDW  231 (276)
Q Consensus       158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS------~D~~~~~~~~  231 (276)
                      ++|+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.|+++++++ ..++.+++|+      .++.+..++|
T Consensus         1 ~~p~f~l~~~~g~~~~l~-~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~~~~   77 (138)
T 4evm_A            1 EVADFELMGVDGKTYRLS-DYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEA-GDDYVVLTVVSPGHKGEQSEADFKNW   77 (138)
T ss_dssp             CCCCCEEEBTTSCEEEGG-GGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTC-TTTEEEEEEECTTSTTCCCHHHHHHH
T ss_pred             CCCcceeECCCCCEEEHH-HhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCCchhhHHHHHHH
Confidence            489999999999999999 899999999999 999999999999999999984 5679999993      3445555555


Q ss_pred             HHHHHhcccCCe-eEEEeeCCcchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGL-LINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .+.+      ++ .++++.|.+..   +++.||+..-+
T Consensus        78 ~~~~------~~~~~~~~~d~~~~---~~~~~~v~~~P  106 (138)
T 4evm_A           78 YKGL------DYKNLPVLVDPSGK---LLETYGVRSYP  106 (138)
T ss_dssp             HTTC------CCTTCCEEECTTCH---HHHHTTCCSSS
T ss_pred             Hhhc------CCCCeeEEECcchH---HHHHcCcccCC
Confidence            5555      66 78999886553   67788875433

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.63  E-value=3.8e-16  Score=124.05  Aligned_cols=102  Identities=20%  Similarity=0.272  Sum_probs=78.7

Q ss_pred             cccCCCCCc-EEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHH-hCCcEEEEEeCCC-hHHHHH
Q psy1172         154 FAAALLPGC-SLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFE-QRTCKVIALSCDS-VESHHD  230 (276)
Q Consensus       154 ~~G~~aPdF-~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~-~~gv~Vv~VS~D~-~~~~~~  230 (276)
                      .+|+.+|+| +|++.+| .++++ +++||++||+|| ++|||+|+.++|.|++++++++ +.+++|++|+.|. .+..++
T Consensus         3 ~~g~~~p~~~~l~~~~g-~~~l~-~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~   79 (144)
T 1o73_A            3 GLAKYLPGATNLLSKSG-EVSLG-SLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHD   79 (144)
T ss_dssp             GGGGTSCTTCCBBCTTS-CBCSG-GGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHH
T ss_pred             chhhhCccceEeecCCC-cCcHH-HhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHH
Confidence            478999998 9999999 99999 899999999999 9999999999999999999998 4789999999985 344444


Q ss_pred             HHHHHHhcccCC-eeEEEeeCCcchhhhhhhhccccc
Q psy1172         231 WIKALVRDCILG-LLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       231 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      +.+++      + ..+++..  ......+++.||+..
T Consensus        80 ~~~~~------~~~~~~~~~--~~~~~~~~~~~~v~~  108 (144)
T 1o73_A           80 YYGKM------PWLALPFDQ--RSTVSELGKTFGVES  108 (144)
T ss_dssp             HHTTC------SSEECCTTC--HHHHHHHHHHHTCCS
T ss_pred             HHHhC------CceEeeccc--hhHHHHHHHHcCCCC
Confidence            44333      2 2333332  112334577787743

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.62  E-value=3.1e-16  Score=125.85  Aligned_cols=103  Identities=10%  Similarity=0.114  Sum_probs=82.4

Q ss_pred             cccccCCCCCcEEecCCC--------CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         152 DRFAAALLPGCSLLGCQA--------SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G--------~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .+.+|+.+|+|++++.+|        +.++++ +++||++||+|| ++|||+|..+++.|++++++   .++.+++|+.|
T Consensus         7 ~~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~-~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~~   81 (156)
T 1kng_A            7 SALIGRPAPQTALPPLEGLQADNVQVPGLDPA-AFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYK   81 (156)
T ss_dssp             -----CBCCCCCBCCCTTCEETTEECCCBCGG-GGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEES
T ss_pred             hHHhCCCCCCceeeeccCcccccccCceechH-HhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeEEEEEECC
Confidence            457899999999999999        899999 889999999999 99999999999999998776   45999999975


Q ss_pred             -ChHHHHHHHHHHHhcccCCeeEE-EeeCCcchhhhhhhhccccccc
Q psy1172         224 -SVESHHDWIKALVRDCILGLLIN-LSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       224 -~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                       +.+..++|.+.+      +++|+ +..|...   .+++.||+..-+
T Consensus        82 ~~~~~~~~~~~~~------~~~~~~~~~d~~~---~~~~~~~v~~~P  119 (156)
T 1kng_A           82 DAADNARRFLGRY------GNPFGRVGVDANG---RASIEWGVYGVP  119 (156)
T ss_dssp             CCHHHHHHHHHHH------CCCCSEEEEETTS---HHHHHTTCCSSC
T ss_pred             CCHHHHHHHHHHc------CCCCceeeeCchh---HHHHhcCcCccC
Confidence             567788888888      67777 6667543   467788875443

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.41  E-value=3.7e-17  Score=129.48  Aligned_cols=104  Identities=10%  Similarity=0.046  Sum_probs=80.3

Q ss_pred             CCCCCcEEecCCCCeEEeccc-CCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHH--hCCcEEEEEeCC-ChHHHHHH
Q psy1172         157 ALLPGCSLLGCQASLVILECS-IPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFE--QRTCKVIALSCD-SVESHHDW  231 (276)
Q Consensus       157 ~~aPdF~L~~~~G~~v~l~~~-~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~--~~gv~Vv~VS~D-~~~~~~~~  231 (276)
                      +.+|+|+|++.+|+.++++ + ++|| ++||+|| ++|||+|+.++|.|++++++|+  ..++.|++||.| +++..++|
T Consensus         2 ~~~p~~~l~~~~g~~~~l~-~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~   79 (143)
T 2lus_A            2 EFIQGIKLVKKNRCEVNAN-EALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQY   79 (143)
Confidence            4689999999999999999 6 9999 9999999 9999999999999999999995  358999999998 45566667


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .+++      +++++.+.........+++.||+..-+
T Consensus        80 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~P  110 (143)
T 2lus_A           80 MMES------HGDWLAIPYRSGPASNVTAKYGITGIP  110 (143)
Confidence            6666      445443322121223467788875433

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.57  E-value=2.2e-15  Score=126.89  Aligned_cols=90  Identities=27%  Similarity=0.477  Sum_probs=68.3

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      ++++||+++|++++++++||+..+.     |.  ..+++||||++|+|++.+..+...+++.+++++.|++|+...++++
T Consensus        95 ~~~~~~~~~d~~~~~~~~~~v~~~~-----g~--~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~  167 (198)
T 1zof_A           95 GQVSFPMVADITKSISRDYDVLFEE-----AI--ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGE  167 (198)
T ss_dssp             CCCSSCEEECTTSHHHHHTTCEETT-----TE--ECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHHHHSSCC
T ss_pred             cCceeEEEECCchHHHHHhCCcccC-----Cc--ccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCC
Confidence            6799999999999999999997532     32  4689999999999999998888888899999999999999999999


Q ss_pred             CcCCCCCCCCceeeCCC
Q psy1172          97 ATPVDWKVGMEIEVRPG  113 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p~  113 (276)
                      .||+||++|++++++.+
T Consensus       168 ~~p~~w~~~~~~~~~~~  184 (198)
T 1zof_A          168 VCPAGWRKGDKGMKATH  184 (198)
T ss_dssp             CCC--------------
T ss_pred             ccCCcCcCCCccccCCc
Confidence            99999999999997764

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.55  E-value=7.8e-16  Score=124.69  Aligned_cols=103  Identities=8%  Similarity=0.095  Sum_probs=79.7

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC---hHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS---VESHHDW  231 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~---~~~~~~~  231 (276)
                      +|+.+|  +|++.+|+.++++ +++||++||+|| ++|||+|+.++|.|++++++|+..+++||+|+.|.   ....+++
T Consensus        16 ~~~~~p--~l~~~~g~~~~~~-~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~   91 (164)
T 2h30_A           16 VPHTMS--TMKTADNRPASVY-LKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEF   91 (164)
T ss_dssp             HHHHHT--TCEETTSSBGGGG-CCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHH
T ss_pred             cCCcCC--ccCCCCCCEeeHH-HhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHH
Confidence            566666  7889999999998 899999999999 99999999999999999999999999999999853   1222333


Q ss_pred             HHHHHhcccCCee-EEEeeCCcchhhhhhhhcccccc
Q psy1172         232 IKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       232 ~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      .+...+.   +++ +++..|...   .+++.||+..-
T Consensus        92 ~~~~~~~---~~~~~~~~~d~~~---~~~~~~~v~~~  122 (164)
T 2h30_A           92 QKWYAGL---NYPKLPVVTDNGG---TIAQNLNISVY  122 (164)
T ss_dssp             HHHHTTS---CCTTSCEEECTTC---HHHHHTTCCSS
T ss_pred             HHHHHhC---CCCcceEEEcCch---HHHHHcCCCcc
Confidence            3333222   455 778877544   46778887543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.55  E-value=4.4e-15  Score=123.84  Aligned_cols=89  Identities=21%  Similarity=0.407  Sum_probs=66.6

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccC-CC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTK-KV   96 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~-~~   96 (276)
                      +++||+++|+++++++.||+.....    |.  ..|++||||++|+|++.+..+...+++.+++++.|++|+..+++ ++
T Consensus        91 ~~~~~~~~d~~~~~~~~~~v~~~~~----g~--~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~~~~  164 (187)
T 1we0_A           91 SIEYIMIGDPSQTISRQFDVLNEET----GL--ADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGE  164 (187)
T ss_dssp             TCCSEEEECTTCHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHHHHTSTTC
T ss_pred             CCCceEEECCchHHHHHhCCCcCCC----Cc--eeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhhhhCCCc
Confidence            5999999999999999999875432    32  46899999999999999998888888999999999999988888 89


Q ss_pred             CcCCCCCCCCceeeCC
Q psy1172          97 ATPVDWKVGMEIEVRP  112 (276)
Q Consensus        97 ~~p~~w~~g~~~~~~p  112 (276)
                      +||+||++|++||.++
T Consensus       165 ~~p~~w~~~~~~~~~~  180 (187)
T 1we0_A          165 VCPAKWEEGGETLKPS  180 (187)
T ss_dssp             CC--------------
T ss_pred             ccccccccCCceeecC
Confidence            9999999999999765

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.40  E-value=3.6e-13  Score=110.55  Aligned_cols=71  Identities=20%  Similarity=0.398  Sum_probs=59.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC-CHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR-NFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r-~~~eilr~l~~lq   89 (276)
                      ++++||+|+|++++++++||++.+...+..+  .+.|+|||||++|+|++++.++...+| +++|+|+.|++|.
T Consensus        88 ~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~--~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A           88 NRLAFNLLSDYNREVIKLYNVYHEDLKGLKM--VAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             TTCCSEEEECTTSHHHHHTTCEEEEETTEEE--EECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             cCcccceeecCchHHHHHcCCcccccccCcC--CeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            5599999999999999999998654322112  367999999999999999998777666 8999999999885

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.37  E-value=1.2e-12  Score=109.78  Aligned_cols=83  Identities=34%  Similarity=0.650  Sum_probs=58.4

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVA   97 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~   97 (276)
                      +++||+++|+++++++.||+... .    |.  ..+++||||++|+|++.+..+.+.+++.+++++.|++|+.    +..
T Consensus       105 ~~~~~~~~d~~~~~~~~~~v~~~-~----g~--~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~----~~~  173 (195)
T 2bmx_A          105 TLPFPMLSDIKRELSQAAGVLNA-D----GV--ADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS----DEL  173 (195)
T ss_dssp             GCCSCEEECTTSHHHHHHTCBCT-T----SS--BCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC-------
T ss_pred             CCceeEEeCCchHHHHHhCCccc-C----CC--ccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh----CCC
Confidence            69999999999999999999754 1    33  4589999999999999999888888899999999999985    679


Q ss_pred             cCCCCCCCCceeeC
Q psy1172          98 TPVDWKVGMEIEVR  111 (276)
Q Consensus        98 ~p~~w~~g~~~~~~  111 (276)
                      ||++|++|++++++
T Consensus       174 ~p~~w~~~~~~~~~  187 (195)
T 2bmx_A          174 CASNWRKGDPTLDA  187 (195)
T ss_dssp             --------------
T ss_pred             cCcccccCCcccCC
Confidence            99999999999855

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.35  E-value=2.6e-12  Score=104.47  Aligned_cols=72  Identities=31%  Similarity=0.463  Sum_probs=58.9

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC-CHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR-NFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r-~~~eilr~l~~lq   89 (276)
                      ++++||+|+|++++++++||+...... ..|..++.|+|||||++|+|++++.++...++ +++||+++|++|.
T Consensus        85 ~~~~~p~l~D~~~~v~~~ygv~~~~~~-~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~Ls  157 (157)
T 4g2e_A           85 NKLNFTILSDYNREVVKKYNVAWEFPA-LPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSLS  157 (157)
T ss_dssp             TTCCSEEEECTTSHHHHHTTCEEECTT-STTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHTC
T ss_pred             cCCcEEEEEcCCcHHHHHcCCcccccc-CCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHhC
Confidence            559999999999999999999754321 11333468999999999999999998776665 8999999999883

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=99.34  E-value=4.7e-12  Score=106.63  Aligned_cols=112  Identities=17%  Similarity=0.267  Sum_probs=87.0

Q ss_pred             cccccCCCCC--cEEe-------cCC----C--CeEEecccC-CCCeEEEEEEcCCCCcccHH-HHHHHHHHHHHH-HhC
Q psy1172         152 DRFAAALLPG--CSLL-------GCQ----A--SLVILECSI-PAFWGILFSHPSDFTPVCTT-ELARVLQLIKEF-EQR  213 (276)
Q Consensus       152 ~~~~G~~aPd--F~L~-------~~~----G--~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~-el~~l~~~~~~~-~~~  213 (276)
                      ...+|+++|.  +++.       +.+    |  +++++++.+ +||+|||+++|++|+|+|.. ++|.+.+.++++ +.+
T Consensus        25 ~~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~k  104 (199)
T 4h86_A           25 SDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEK  104 (199)
T ss_dssp             CTTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHS
T ss_pred             HHHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhc
Confidence            4468999995  5432       111    2  357777555 69999999999999999987 599999999876 789


Q ss_pred             Cc-EEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         214 TC-KVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       214 gv-~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |+ +|++||+|+++.+++|.+.+..+.  ...+++++|..+   +++++||+..+.
T Consensus       105 Gvd~I~ciSVND~FVm~AW~k~~~~~~--~~~i~~laD~~~---eftkalGl~~~~  155 (199)
T 4h86_A          105 EVDQVIVVTVDNPFANQAWAKSLGVKD--TTHIKFASDPGC---AFTKSIGFELAV  155 (199)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHTTCCC--CSSEEEEECGGG---HHHHHTTCEEEE
T ss_pred             CCcEEEEEEcCCHHHHHHHHHHhcccc--cccccccCCcch---HHHHhcCceeec
Confidence            98 799999999999999999883221  236899999554   578899986653

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.24  E-value=1.2e-11  Score=102.65  Aligned_cols=70  Identities=14%  Similarity=0.123  Sum_probs=57.6

Q ss_pred             CCC--ceEEEeCccHHHHHhCCCCCCCC-CCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLP--YPIIADQDRSLAVQLGMLDPVEK-DSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~--fpllsD~~~~va~~yG~~~~~~~-~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      +++  ||+|+|++++++++||+..++.. +..|...+.|+||||| ||+|++++.++..+||+++|+.++|++|
T Consensus       101 ~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~~~~~~~vl~~l  173 (173)
T 3mng_A          101 KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLTCSLAPNIISQL  173 (173)
T ss_dssp             TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSSTTSHHHHHHHC
T ss_pred             CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcchHHHHHHHHhC
Confidence            466  99999999999999999865320 0012123679999999 9999999999999999999999999875

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.09  E-value=1.7e-10  Score=96.47  Aligned_cols=69  Identities=19%  Similarity=0.145  Sum_probs=54.5

Q ss_pred             CC-CceEEEeCccHHHHHhCCCCCCCCCCCCCC-cccceEEEECCCCcEEEEEecCCCC---------CCCHHHHHHHHH
Q psy1172          18 KL-PYPIIADQDRSLAVQLGMLDPVEKDSKGMP-LTCRAVFIIDPAKKLRLSFLYPATT---------GRNFDEILRVLD   86 (276)
Q Consensus        18 ~l-~fpllsD~~~~va~~yG~~~~~~~~~~g~~-~~~R~tfiIdp~g~I~~~~~~~~~~---------~r~~~eilr~l~   86 (276)
                      ++ +||||||++++++++|||+.+...  .|+. .+.|+||||| +|+|++++.++...         .+|++++|+.|+
T Consensus       102 ~~~~f~lLsD~~~~~a~~yGv~~~~~~--~G~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~  178 (182)
T 1xiy_A          102 DIKKIKYISDGNSSFTDSMNMLVDKSN--FFMGMRPWRFVAIVE-NNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLK  178 (182)
T ss_dssp             TCCSSEEEECTTSHHHHHTTCEEECGG--GTCCEEECCEEEEEE-TTEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHH
T ss_pred             CCCCceEEEeCchHHHHHhCCceeccc--cCCCCceEEEEEEEc-CCEEEEEEEeCCcccccccCcccCCCHHHHHHHHH
Confidence            35 799999999999999999854321  1321 2579999999 99999999987544         379999999998


Q ss_pred             hhc
Q psy1172          87 SLQ   89 (276)
Q Consensus        87 ~lq   89 (276)
                      +.+
T Consensus       179 ~~~  181 (182)
T 1xiy_A          179 NNQ  181 (182)
T ss_dssp             CC-
T ss_pred             hcc
Confidence            654

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.04  E-value=6.2e-10  Score=95.98  Aligned_cols=70  Identities=21%  Similarity=0.266  Sum_probs=57.2

Q ss_pred             CC-CceEEEeC-ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCC-CCHHHHHHHHHhhcc
Q psy1172          18 KL-PYPIIADQ-DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTG-RNFDEILRVLDSLQL   90 (276)
Q Consensus        18 ~l-~fpllsD~-~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~-r~~~eilr~l~~lq~   90 (276)
                      ++ +||+|+|+ +++++++||+..+... ..|+  +.|+|||||++|+|++++..+...+ +++++++++|++|+.
T Consensus       104 gl~~fplLsD~~~~~vak~yGv~~~~~~-~~G~--~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~  176 (224)
T 3keb_A          104 GLPNIALLSTLRGRDFHKRYGVLITEYP-LSGY--TSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQ  176 (224)
T ss_dssp             CCTTCEEEESTTCTTHHHHTTCBCCSTT-STTC--BCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCceEEEcCCchHHHHHhCCcccccc-ccCC--ccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhh
Confidence            47 69999998 7999999999864311 1243  6799999999999999999775554 699999999999863

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.04  E-value=7.8e-11  Score=92.78  Aligned_cols=95  Identities=14%  Similarity=0.016  Sum_probs=68.4

Q ss_pred             cccCCCCCcE-EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCCh-HHH
Q psy1172         154 FAAALLPGCS-LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDSV-ESH  228 (276)
Q Consensus       154 ~~G~~aPdF~-L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~~-~~~  228 (276)
                      ..|..+|+|+ +.+.++....++ +.+||++||+|| ++||++|+...+.+   .++.+++.  ++.++.|+.+.. ...
T Consensus         5 ~~~~~~~~f~~~~~~~~~~~~l~-~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~~~~   80 (134)
T 2fwh_A            5 AQTQTHLNFTQIKTVDELNQALV-EAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQD   80 (134)
T ss_dssp             -----CCCCEECCSHHHHHHHHH-HHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHH
T ss_pred             cccccCCCcEEecCHHHHHHHHH-HhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCcchH
Confidence            4688899998 666666666676 667999999999 99999999999988   88888874  599999998653 444


Q ss_pred             HHHHHHHHhcccCCeeEEEeeCCcchh
Q psy1172         229 HDWIKALVRDCILGLLINLSVDDFKEV  255 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~l~D~~~~~  255 (276)
                      ....+++.-   .+++..++.|.++..
T Consensus        81 ~~l~~~~~v---~~~Pt~~~~d~~G~~  104 (134)
T 2fwh_A           81 VALLKHLNV---LGLPTILFFDGQGQE  104 (134)
T ss_dssp             HHHHHHTTC---CSSSEEEEECTTSCB
T ss_pred             HHHHHHcCC---CCCCEEEEECCCCCE
Confidence            556666621   245777777776653

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.96  E-value=5.5e-10  Score=92.85  Aligned_cols=67  Identities=16%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             CCC--ceEEEeCccHHHHHhCCCCCCCCCCCCCCc-ccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLP--YPIIADQDRSLAVQLGMLDPVEKDSKGMPL-TCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~--fpllsD~~~~va~~yG~~~~~~~~~~g~~~-~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      +++  ||||||++++++++||+..+...  .|+.. +.|+|||| +||+|++++.++ ..+++.+++.++|++|
T Consensus       105 ~l~~~f~lLsD~~~~va~ayGv~~~~~~--~G~g~~s~R~tfII-~dG~I~~~~~~~-~~~~~~~~a~~vL~~L  174 (176)
T 4f82_A          105 HTAGKVRMMADGSAAFTHALGLTQDLSA--RGMGIRSLRYAMVI-DGGVVKTLAVEA-PGKFEVSDAASVLATL  174 (176)
T ss_dssp             TCTTTSEEEECTTCHHHHHHTCEEECGG--GTCCEEECCEEEEE-ETTEEEEEEECC-TTCCSSSSHHHHHHTC
T ss_pred             CCCCCceEEEcCchHHHHHhCCCccccc--cCCCcccccEEEEE-cCCEEEEEEEcC-CCCcchhhHHHHHHHh
Confidence            466  99999999999999999865321  14321 57999999 999999999987 3345555555555544

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.94  E-value=1.3e-09  Score=90.10  Aligned_cols=72  Identities=15%  Similarity=0.312  Sum_probs=57.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||+++|++++++++||+...............|++||||++|+|++++ ++....++++|+++.|++|+
T Consensus       106 ~~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-~~~~~~~~~~~il~~l~~l~  177 (179)
T 3ixr_A          106 QGFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-RQVKVPGHAEEVLNKLKAHA  177 (179)
T ss_dssp             HTCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-CSCCSTTHHHHHHHHHHHHH
T ss_pred             cCCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-cCCCCCCCHHHHHHHHHHHh
Confidence            4599999999999999999997543211001111369999999999999999 57788899999999999987

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.92  E-value=2.6e-09  Score=86.37  Aligned_cols=75  Identities=20%  Similarity=0.342  Sum_probs=61.1

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      .+++||+++|.++++++.||+..        ...+.+++||||++|+|++.+..+.....+++++++.|++||..++...
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~v~~--------~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~~~~~~~  155 (161)
T 3drn_A           84 YKLPFILVSDPDKKIRELYGAKG--------FILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEEEISLE  155 (161)
T ss_dssp             TTCCSEEEECTTSHHHHHTTCCC--------SSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHHHHHC--
T ss_pred             hCCCceEEECCcHHHHHHcCCCC--------cCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhhhhcchh
Confidence            45899999999999999999962        1225689999999999999999777888899999999999998777665


Q ss_pred             CcC
Q psy1172          97 ATP   99 (276)
Q Consensus        97 ~~p   99 (276)
                      .+|
T Consensus       156 ~~~  158 (161)
T 3drn_A          156 HHH  158 (161)
T ss_dssp             ---
T ss_pred             hcc
Confidence            544

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.87  E-value=9e-10  Score=85.22  Aligned_cols=89  Identities=11%  Similarity=0.010  Sum_probs=64.5

Q ss_pred             CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe--CCChHHHHHHHHH
Q psy1172         157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS--CDSVESHHDWIKA  234 (276)
Q Consensus       157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS--~D~~~~~~~~~~~  234 (276)
                      +.+++++..+.+|...... ..+|+++||.|| ++||++|+...|.|.+++++++ .++.++.|+  .|..   ....++
T Consensus         4 ~~~~~l~~~~~~~~~~~~~-~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~~d~~---~~~~~~   77 (126)
T 2l57_A            4 EGIKQINFQSINVVENLEE-AKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLEEEKN---IDLAYK   77 (126)
T ss_dssp             CCSSCTTTTCCSEESSTTT-CCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETTSSHH---HHHHHH
T ss_pred             cccCCCCccccchhHHHHH-HhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCch---HHHHHH
Confidence            4567777777776554444 567899999999 9999999999999999999986 679999999  6532   234455


Q ss_pred             HHhcccCCeeEEEeeCCcch
Q psy1172         235 LVRDCILGLLINLSVDDFKE  254 (276)
Q Consensus       235 ~~~~~~~~~~~~~l~D~~~~  254 (276)
                      +.-   .+++..++.|.++.
T Consensus        78 ~~v---~~~Pt~~~~~~~G~   94 (126)
T 2l57_A           78 YDA---NIVPTTVFLDKEGN   94 (126)
T ss_dssp             TTC---CSSSEEEEECTTCC
T ss_pred             cCC---cceeEEEEECCCCC
Confidence            521   14566667665444

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.86  E-value=1.1e-09  Score=88.47  Aligned_cols=99  Identities=11%  Similarity=-0.054  Sum_probs=68.0

Q ss_pred             CCcccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCC
Q psy1172         148 GGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       148 ~~~~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      ++......+...++|   +..|+.+.++ .++||+++|+||.++|||+|+.++|.|   .++.+.+ ..++.++.|+.+.
T Consensus        19 ~~~~l~~~~~~~~~~---~~~~~~~~~a-~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~-~~~~~~v~vd~~~   93 (154)
T 2ju5_A           19 NLQQTRPIAAANLQW---ESYAEALEHS-KQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFA-GVHLHMVEVDFPQ   93 (154)
T ss_dssp             CSSCCCSSCCCCCCE---ECHHHHHHHH-HHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHH-HHHCEEEEEECCS
T ss_pred             cchhhhhcccCCCCC---CCHHHHHHHH-HhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHh-cCcEEEEEecCcc
Confidence            333334566667777   3345667777 678999999999889999999999999   6665444 3568899998875


Q ss_pred             h--------HHHHHHHHHHHhcccCCeeEEEeeCCcch
Q psy1172         225 V--------ESHHDWIKALVRDCILGLLINLSVDDFKE  254 (276)
Q Consensus       225 ~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~~~  254 (276)
                      .        ....+..+.+.-   .++|..++.|.++.
T Consensus        94 ~~~~~~~~~~~~~~l~~~~~v---~~~Pt~~~~d~~G~  128 (154)
T 2ju5_A           94 KNHQPEEQRQKNQELKAQYKV---TGFPELVFIDAEGK  128 (154)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTC---CSSSEEEEECTTCC
T ss_pred             ccCCChhhHhhHHHHHHHcCC---CCCCEEEEEcCCCC
Confidence            3        233445555521   24677777776664

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=98.86  E-value=1.6e-09  Score=89.59  Aligned_cols=64  Identities=20%  Similarity=0.105  Sum_probs=46.2

Q ss_pred             CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC---CHHHHHHHH
Q psy1172          20 PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR---NFDEILRVL   85 (276)
Q Consensus        20 ~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r---~~~eilr~l   85 (276)
                      +||||||++++++++|||+.+......|. .+.|+||||| ||+|++++.++...+.   +.++||+.|
T Consensus       103 ~f~lLSD~~~~~a~ayGv~~~~~~~g~g~-~~~R~tfvId-dG~V~~~~v~~~~~~~~~s~a~~vL~~~  169 (171)
T 2xhf_A          103 KIRMLADMHGEFTRALGTELDSSKMLGNN-RSRRYAMLID-DNKIRSVSTEPDITGLACLLSIQRQKEN  169 (171)
T ss_dssp             CSEEEECTTSHHHHHHTCBCCCHHHHSSC-CBCCEEEEEE-TTEEEEEEETTSCSHHHHHHHHHHC---
T ss_pred             CeEEEEeCCchHHHHhCCceeccccCCCc-ceEEEEEEEe-CCEEEEEEEeCCCCcccCCCHHHHHHHh
Confidence            89999999999999999986542100022 3689999999 9999999998766533   355655544

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.82  E-value=3.8e-09  Score=85.22  Aligned_cols=72  Identities=15%  Similarity=0.318  Sum_probs=56.9

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||+++|++++++++||+...............|++||||++|+|++++ ++.....+.+++++.|++|+
T Consensus        90 ~~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~~~~~il~~l~~l~  161 (163)
T 3gkn_A           90 QGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAGHADAVLAALKAHA  161 (163)
T ss_dssp             HCCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-CSCCSTTHHHHHHHHHHHHC
T ss_pred             hCCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-cCCCcccCHHHHHHHHHHHh
Confidence            4589999999999999999997532210000000268999999999999999 67888889999999999986

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.77  E-value=9.5e-09  Score=80.83  Aligned_cols=82  Identities=11%  Similarity=0.020  Sum_probs=62.3

Q ss_pred             EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCe
Q psy1172         164 LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGL  243 (276)
Q Consensus       164 L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~  243 (276)
                      +.+.+|....++ .++|+++||.|| +.||++|+..+|.|.++++++.+ .+.++.|+.|...   ...+++.-   .++
T Consensus        36 l~~~~~~~~~l~-~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~v---~~~  106 (141)
T 3hxs_A           36 IADYENHSKEWK-YLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEP---ELARDFGI---QSI  106 (141)
T ss_dssp             TCCCSSCCCCCC-CCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTTCH---HHHHHTTC---CSS
T ss_pred             hhccccchhHHH-HhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCCCH---HHHHHcCC---CCc
Confidence            455677778887 789999999999 99999999999999999999864 4899999998643   33455521   145


Q ss_pred             eEEEeeCCcch
Q psy1172         244 LINLSVDDFKE  254 (276)
Q Consensus       244 ~~~~l~D~~~~  254 (276)
                      |.-++.+.++.
T Consensus       107 Pt~~~~~~~g~  117 (141)
T 3hxs_A          107 PTIWFVPMKGE  117 (141)
T ss_dssp             SEEEEECSSSC
T ss_pred             CEEEEEeCCCC
Confidence            66666665544

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.76  E-value=2.5e-08  Score=81.08  Aligned_cols=66  Identities=23%  Similarity=0.328  Sum_probs=54.3

Q ss_pred             CCC-CceEEEeC-ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHHHHHhh
Q psy1172          17 GKL-PYPIIADQ-DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l-~fpllsD~-~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr~l~~l   88 (276)
                      +++ +||+++|+ +++++++||+.....    |.  +.|++||||++|+|++++..+ .....+.+++++.|++|
T Consensus        98 ~~~~~~~~l~D~~~~~~~~~~gv~~~~~----g~--~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~l  166 (166)
T 3p7x_A           98 AGLDNVITLSDHRDLSFGENYGVVMEEL----RL--LARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI  166 (166)
T ss_dssp             HTCSSCEEEECTTTCHHHHHHTCEETTT----TE--ECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHTC
T ss_pred             cCCCceEEccCCchhHHHHHhCCccccC----Cc--eeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhcC
Confidence            348 89999999 999999999975432    33  469999999999999998755 44567899999999864

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.76  E-value=9e-09  Score=79.97  Aligned_cols=73  Identities=11%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA  234 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~  234 (276)
                      ...++|+|+  ..+++.+... ..+||+++|.|| ++||++|+..+|.|+++++++++ ++.++.|+.|...   ...++
T Consensus        20 ~~~~~~~~~--~~~~~~~~~~-~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~---~l~~~   91 (128)
T 3ul3_B           20 MFKKVPRLQ--QNGSNIINGV-NMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDKNE---SLARK   91 (128)
T ss_dssp             ------CCC--CCCCSSSSBT-TSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGGCH---HHHHH
T ss_pred             HhccCCccc--cCCccHHHHH-HccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCH---HHHHH
Confidence            445678776  4455556665 678999999999 99999999999999999999963 5899999887543   34455


Q ss_pred             H
Q psy1172         235 L  235 (276)
Q Consensus       235 ~  235 (276)
                      +
T Consensus        92 ~   92 (128)
T 3ul3_B           92 F   92 (128)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.72  E-value=6e-08  Score=78.49  Aligned_cols=65  Identities=22%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             CC-CceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHHHHHhh
Q psy1172          18 KL-PYPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l-~fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr~l~~l   88 (276)
                      ++ +||+++| ++++++++||+.....    |+  +.|++||||++|+|++.+..+ .....+++++++.|++|
T Consensus        96 ~~~~~~~l~D~~~~~~~~~~gv~~~~~----g~--~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~l  163 (163)
T 1psq_A           96 GLDNAIMLSDYFDHSFGRDYALLINEW----HL--LARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             TCTTSEEEECTTTCHHHHHHTCBCTTT----CS--BCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred             CCCCcEEecCCchhHHHHHhCCccccC----Cc--eEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHhC
Confidence            47 9999999 8999999999975431    43  468999999999999999865 34556889999999875

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.71  E-value=7.2e-09  Score=85.32  Aligned_cols=73  Identities=15%  Similarity=0.154  Sum_probs=52.4

Q ss_pred             ecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172         174 LECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFK  253 (276)
Q Consensus       174 l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~  253 (276)
                      ++ +++|+++||+|| ++|||+|+.++|.|.++++++  .++.++.|++|..   .+..+.+..++..++|..++.|.++
T Consensus        49 l~-~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~--~~v~~~~v~~d~~---~~~~~~~~~~~v~~iPt~i~~~~~G  121 (167)
T 1z6n_A           49 LQ-RIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQ--PNIELAIISKGRA---EDDLRQRLALERIAIPLVLVLDEEF  121 (167)
T ss_dssp             HH-TCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHC--TTEEEEEECHHHH---HHHTTTTTTCSSCCSSEEEEECTTC
T ss_pred             HH-HhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHC--CCcEEEEEECCCC---HHHHHHHHHcCCCCcCeEEEECCCC
Confidence            44 678999999999 999999999999999999876  3689999987642   2223333222223566667767543

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.69  E-value=1.3e-08  Score=84.99  Aligned_cols=64  Identities=8%  Similarity=0.085  Sum_probs=47.4

Q ss_pred             CCC--ceEEEeCccHHHHHhCCCCCCCCCCCCCC-cccceEEEECCCCcEEEEEecCCCCC---CCHHHHHHH
Q psy1172          18 KLP--YPIIADQDRSLAVQLGMLDPVEKDSKGMP-LTCRAVFIIDPAKKLRLSFLYPATTG---RNFDEILRV   84 (276)
Q Consensus        18 ~l~--fpllsD~~~~va~~yG~~~~~~~~~~g~~-~~~R~tfiIdp~g~I~~~~~~~~~~~---r~~~eilr~   84 (276)
                      +++  ||+|+|++++++++||+..+...  .|+. .+.|+||||| +|+|++++.++...+   .+++++|+.
T Consensus       114 ~~~~~fp~l~D~~~~va~~yGv~~~~~~--~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~~~~~~~vL~~  183 (184)
T 3uma_A          114 GGMGKIHFLSDWNAAFTKAIGMEIDLSA--GTLGIRSKRYSMLVE-DGVVKALNIEESPGQATASGAAAMLEL  183 (184)
T ss_dssp             TCTTTSEEEECTTCHHHHHTTCEEEEGG--GTCEEEECCEEEEEE-TTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred             CCCCceEEEEcCchHHHHHcCCceeccc--cCCcccceeEEEEEC-CCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence            477  99999999999999999754211  1221 1579999997 999999999876544   355666554

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.68  E-value=2.3e-08  Score=82.21  Aligned_cols=68  Identities=12%  Similarity=0.078  Sum_probs=49.9

Q ss_pred             CCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          19 LPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        19 l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++||+|+|++++++++||+..+......|+. ..|.+|||| +|+|++++..+...+++..++.++|++|
T Consensus       104 ~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~-~~~~t~~I~-~G~I~~~~~~~~~~~~~~~~~~~il~~l  171 (171)
T 2pwj_A          104 DAIEFYGDFDGSFHKSLELTTDLSAGLLGIR-SERWSAYVV-DGKVKALNVEESPSDVKVSGAETILGQI  171 (171)
T ss_dssp             TTSEEEECTTCHHHHHHTCEEECTTTTCCEE-ECCEEEEEE-TTEEEEEEECSSTTCCSSSSHHHHHHHC
T ss_pred             CceEEEECCccHHHHHhCCccccccccCCcc-cceeEEEEE-CCEEEEEEeecCCCCCcccCHHHHHhcC
Confidence            5899999999999999999754321111221 358899999 9999999998777777655555555543

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.67  E-value=7.4e-08  Score=77.19  Aligned_cols=67  Identities=16%  Similarity=0.363  Sum_probs=56.9

Q ss_pred             CCCCceEEEeC--ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQ--DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~--~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||+++|.  ++++++.||+.....    |+  |.|++||||++|+|++.+..+.....+++++++.|++||
T Consensus        91 ~~~~~~~~~d~~~~~~~~~~~~v~~~~~----~~--p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  159 (160)
T 1xvw_A           91 SGFTFPLLSDFWPHGAVSQAYGVFNEQA----GI--ANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT  159 (160)
T ss_dssp             HTCCSCEEECTTTTTHHHHHTTCEETTT----TE--ECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             cCCCceEEecCCcChHHHHHcCCccccC----CC--eeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence            34899999995  999999999864331    33  578999999999999999987777779999999999887

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.66  E-value=5.8e-08  Score=80.46  Aligned_cols=78  Identities=17%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCC----CCCC-CHHHHHHHHHhhccc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPA----TTGR-NFDEILRVLDSLQLT   91 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~----~~~r-~~~eilr~l~~lq~~   91 (276)
                      ++++||++.|.++++++.||+.            ..+++||||++|+|++...+..    ..|. +.+++.+.|++|...
T Consensus       108 ~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~  175 (196)
T 2ywi_A          108 LGYPFPYLYDETQEVAKAYDAA------------CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEG  175 (196)
T ss_dssp             HTCCSCEEECSSCHHHHHHTCC------------EESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHT
T ss_pred             cCCCceEEECCchHHHHHhCCC------------CCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcC
Confidence            4589999999999999999974            2469999999999999875332    1233 678888888876422


Q ss_pred             ------ccCCCCcCCCCCCCC
Q psy1172          92 ------DTKKVATPVDWKVGM  106 (276)
Q Consensus        92 ------~~~~~~~p~~w~~g~  106 (276)
                            ....+.||++|++|+
T Consensus       176 ~~~~~~~~~~~gC~~~~~~~~  196 (196)
T 2ywi_A          176 RPVPEKQKPSIGCSIKWKPSA  196 (196)
T ss_dssp             CCCCSCCCCCEEEECCCCCCC
T ss_pred             CCCCCCCCCCCceeeeeccCC
Confidence                  223578999999986

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.65  E-value=8.5e-08  Score=81.68  Aligned_cols=79  Identities=15%  Similarity=0.289  Sum_probs=57.7

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC-----CCCCHHHHHHHHHhhccc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT-----TGRNFDEILRVLDSLQLT   91 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~-----~~r~~~eilr~l~~lq~~   91 (276)
                      .+++||++.|.++++++.||+.            ..+++||||++|+|++.......     .....+++.++|++|...
T Consensus       121 ~~~~~~~l~D~~~~~~~~~~v~------------~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~  188 (218)
T 3u5r_E          121 YGYGFPYLKDASQSVAKAYGAA------------CTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKG  188 (218)
T ss_dssp             HTCCSCEEECTTCHHHHHHTCC------------EESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTT
T ss_pred             hCCCccEEECCccHHHHHcCCC------------CCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcC
Confidence            4589999999999999999985            24799999999999987654322     122457777777776422


Q ss_pred             c------cCCCCcCCCCCCCCc
Q psy1172          92 D------TKKVATPVDWKVGME  107 (276)
Q Consensus        92 ~------~~~~~~p~~w~~g~~  107 (276)
                      .      ...+.||++|.+|++
T Consensus       189 ~~~~~~~~~~~GC~i~w~~~~~  210 (218)
T 3u5r_E          189 KDVGTTQVPSIGCNIKWTAGNE  210 (218)
T ss_dssp             CCCCSCCCCCEEEECCCCCC--
T ss_pred             CCCCcCCcCCCCeeEEeCCCCC
Confidence            2      234679999999875

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.64  E-value=5.9e-08  Score=80.07  Aligned_cols=79  Identities=16%  Similarity=0.324  Sum_probs=57.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCC----CCCCCHHHHHHHHHhhcc--
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPA----TTGRNFDEILRVLDSLQL--   90 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~----~~~r~~~eilr~l~~lq~--   90 (276)
                      ++++||++.|.++++++.||+.            ..+++||||++|+|++......    ....+.+++.+.|++|..  
T Consensus        94 ~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~  161 (188)
T 2cvb_A           94 HGIFFPYLLDETQEVAKAYRAL------------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  161 (188)
T ss_dssp             HTCCSCEEECSSSHHHHHTTCC------------EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             hCCCceEEECCcchHHHHcCCC------------CCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence            4589999999999999999975            2469999999999998832110    111245677777776542  


Q ss_pred             ----cccCCCCcCCCCCCCCc
Q psy1172          91 ----TDTKKVATPVDWKVGME  107 (276)
Q Consensus        91 ----~~~~~~~~p~~w~~g~~  107 (276)
                          .....+.||++|+||++
T Consensus       162 ~~~~~~~~~~gc~~~~~~~~~  182 (188)
T 2cvb_A          162 EPPLKEAPAIGCTIKWRPGNE  182 (188)
T ss_dssp             CCCSSCCCCCSEECCCCTTCC
T ss_pred             CCCcccCCCCceEEEecCCCC
Confidence                22245889999999874

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.63  E-value=7.2e-08  Score=83.18  Aligned_cols=70  Identities=21%  Similarity=0.330  Sum_probs=55.3

Q ss_pred             CCCC-ceEEEeCccHHHHHhCCCCCCCCCCCCCC-cccceEEEECCCCcEEEEEecCCCCC-----CCHHHHHHHHHhhc
Q psy1172          17 GKLP-YPIIADQDRSLAVQLGMLDPVEKDSKGMP-LTCRAVFIIDPAKKLRLSFLYPATTG-----RNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~-fpllsD~~~~va~~yG~~~~~~~~~~g~~-~~~R~tfiIdp~g~I~~~~~~~~~~~-----r~~~eilr~l~~lq   89 (276)
                      ++++ ||+++|++++++++||+..+...  .|+. .+.|+|||| ++|+|++++..+...|     ++++|+|+.|++.+
T Consensus        90 ~~~~~~~~l~D~~~~~~~~~gv~~~~~~--~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~  166 (241)
T 1nm3_A           90 EKSENISFIPDGNGEFTEGMGMLVGKED--LGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQH  166 (241)
T ss_dssp             TTCTTSEEEECTTSHHHHHTTCEEECTT--TTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTS
T ss_pred             cCCCceEEEECCCcHHHHHhCceeeccc--ccCcccceeEEEEE-ECCEEEEEEEeccCCCccceecCHHHHHHHhhhhc
Confidence            3476 99999999999999999754211  1321 146999999 9999999999887777     69999999997643

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=98.59  E-value=5.8e-08  Score=75.55  Aligned_cols=75  Identities=8%  Similarity=0.033  Sum_probs=54.6

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHH--HHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcch
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVL--QLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKE  254 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~--~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~  254 (276)
                      ..||++||+|| ++||++|+..+|.|.  ++.+++.+ ++.++.|+.++........+++.-....++|..++.|.++.
T Consensus        27 ~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~  103 (133)
T 3fk8_A           27 RTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGK  103 (133)
T ss_dssp             HHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSC
T ss_pred             hcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCC
Confidence            45899999999 999999999999999  89888864 59999999943333344556652100015677777776654

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.59  E-value=4.5e-08  Score=79.40  Aligned_cols=64  Identities=17%  Similarity=0.202  Sum_probs=48.6

Q ss_pred             CCC--CceEEEeCccHHHHHhCCCCCCCCCCCCCC-cccceEEEECCCCcEEEEEecCCCCCC---CHHHHHHH
Q psy1172          17 GKL--PYPIIADQDRSLAVQLGMLDPVEKDSKGMP-LTCRAVFIIDPAKKLRLSFLYPATTGR---NFDEILRV   84 (276)
Q Consensus        17 ~~l--~fpllsD~~~~va~~yG~~~~~~~~~~g~~-~~~R~tfiIdp~g~I~~~~~~~~~~~r---~~~eilr~   84 (276)
                      +++  +||+++|++++++++||+.....  ..|+. .+.|++|||| +|+|++++..+ ..+|   ++++||+.
T Consensus        92 ~~~~~~~~~l~D~~~~~~~~~gv~~~~~--~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~~~~~~~vl~~  161 (162)
T 1tp9_A           92 YPENKHVKFLADGSATYTHALGLELDLQ--EKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFTVSSAEDILKD  161 (162)
T ss_dssp             CTTCSSEEEEECTTSHHHHHTTCEEEET--TTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCSSCSHHHHHTT
T ss_pred             cCCCCCeEEEECCCchHHHHcCcccccc--cCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCccCCHHHHHhh
Confidence            457  89999999999999999974321  01321 1469999999 99999999877 6555   58888754

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.58  E-value=1.5e-07  Score=79.31  Aligned_cols=68  Identities=24%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             CCCC-CceEEEeC-ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHHHHH
Q psy1172          16 DGKL-PYPIIADQ-DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLD   86 (276)
Q Consensus        16 ~~~l-~fpllsD~-~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr~l~   86 (276)
                      ..++ +||+++|+ +++++++||+..... ...|+  +.|++||||++|+|++++..+ ....++++++|+.|+
T Consensus       130 ~~~~~~f~~l~D~~~~~~~~~ygv~~~~~-~~~g~--~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~Lk  200 (200)
T 3zrd_A          130 AEGLSNVITLSTLRGADFKQAYGVAITEG-PLAGL--TARAVVVLDGQDNVIYSELVNEITTEPNYDAALAALK  200 (200)
T ss_dssp             TTTCTTEEEEETTSCTHHHHHTTCEECSS-TTTTS--BCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHHHC
T ss_pred             HcCCCCceEEecCchHHHHHHhCceeecc-cCCCc--cccEEEEECCCCeEEEEEecCCcccCCCHHHHHHhhC
Confidence            4679 99999999 999999999975431 11243  469999999999999999754 667789999998874

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.58  E-value=1.3e-07  Score=76.63  Aligned_cols=68  Identities=24%  Similarity=0.298  Sum_probs=53.2

Q ss_pred             CCCC-CceEEEeC-ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEec-CCCCCCCHHHHHHHHH
Q psy1172          16 DGKL-PYPIIADQ-DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLY-PATTGRNFDEILRVLD   86 (276)
Q Consensus        16 ~~~l-~fpllsD~-~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~-~~~~~r~~~eilr~l~   86 (276)
                      .+++ +||+++|+ +++++++||+..... ...|.  ..|++||||++|+|++.+.. .....++++++|+.|+
T Consensus        95 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~-~~~g~--~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~~l~  165 (165)
T 1q98_A           95 AEGIENAKTVSTFRNHALHSQLGVDIQTG-PLAGL--TSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVLA  165 (165)
T ss_dssp             TTTCTTEEEEECTTCTHHHHHTTCEECSS-TTTTS--BCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTTC
T ss_pred             HcCCCceEEeeccccchHHHHhCceeccc-ccCCc--cceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHHhhC
Confidence            3678 79999998 899999999874321 11133  46999999999999999984 5667789999998763

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.56  E-value=5.6e-08  Score=77.24  Aligned_cols=75  Identities=5%  Similarity=-0.024  Sum_probs=60.1

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA  234 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~  234 (276)
                      .|..+|++.+.+.++..+... ..+++++||.|| +.||++|+...|.|+++++++.. ++.++.|+.|...   ...++
T Consensus        31 ~~~~~~~~~v~~l~~~~~~~~-~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~l~~~  104 (148)
T 3p2a_A           31 CGHSLFDGEVINATAETLDKL-LQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEP---ALSTR  104 (148)
T ss_dssp             TCCBTTCCCCEECCTTTHHHH-TTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCH---HHHHH
T ss_pred             cCCccccCCceecCHHHHHHH-HhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcCCH---HHHHH
Confidence            567788888888887766544 357899999999 99999999999999999999854 4899999988643   33445


Q ss_pred             H
Q psy1172         235 L  235 (276)
Q Consensus       235 ~  235 (276)
                      +
T Consensus       105 ~  105 (148)
T 3p2a_A          105 F  105 (148)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.53  E-value=1.1e-07  Score=73.66  Aligned_cols=63  Identities=6%  Similarity=-0.022  Sum_probs=47.1

Q ss_pred             CCcEEecCCCCeEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeCCC
Q psy1172         160 PGCSLLGCQASLVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSCDS  224 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~D~  224 (276)
                      ++-.+...++..+... .. .+++++|.|| ++||++|+...|.|.++++++... ++.++.|+.+.
T Consensus         5 ~~~~v~~l~~~~~~~~-~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~   69 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAI-VMDPKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA   69 (133)
T ss_dssp             SSCSSEECCTTTCCCC-CTCTTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT
T ss_pred             CCCceEEEcCCCHHHH-hccCCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc
Confidence            3444455555544433 22 4899999999 999999999999999999999753 57888887764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.51  E-value=1.6e-07  Score=71.55  Aligned_cols=61  Identities=5%  Similarity=-0.118  Sum_probs=46.2

Q ss_pred             EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh----CCcEEEEEeCCCh
Q psy1172         164 LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ----RTCKVIALSCDSV  225 (276)
Q Consensus       164 L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~----~gv~Vv~VS~D~~  225 (276)
                      +.+.+++.+...-.-++++++|.|| ++||++|+...|.|+++++++.+    .++.++.|+.+..
T Consensus         9 v~~l~~~~f~~~v~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~   73 (121)
T 2djj_A            9 VTVVVAKNYNEIVLDDTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN   73 (121)
T ss_dssp             SEECCTTTTTTSSSCTTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS
T ss_pred             eEEecccCHHHHhhcCCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc
Confidence            3344444433221136899999999 99999999999999999999976    2688999988753

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.46  E-value=4.1e-07  Score=74.03  Aligned_cols=68  Identities=31%  Similarity=0.451  Sum_probs=53.5

Q ss_pred             CCC-CceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCC-CCCCCHHHHHHHHHhh
Q psy1172          17 GKL-PYPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPA-TTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l-~fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~-~~~r~~~eilr~l~~l   88 (276)
                      .++ +||+++| +++++ ++||+..... ...|.  ..|++||||++|+|++.+..+. ....+.+++++.|++|
T Consensus       100 ~~~~~~~~l~D~~~~~~-~~~gv~~~~~-~~~g~--~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          100 FNIQNVTVASDFRYRDM-EKYGVLIGEG-ALKGI--LARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             TTCCSSEEEECTTTCGG-GGGTCBBCSS-TTTTS--BCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             cCCCCeEEeecCccCcH-HHhCCEeccc-ccCCc--eeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence            457 8999999 89999 9999975431 11133  4689999999999999998653 3566899999999876

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.44  E-value=1.4e-07  Score=75.75  Aligned_cols=52  Identities=12%  Similarity=0.100  Sum_probs=43.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++++||+|| ++||++|+.++|.|.++++++.++ +.++.|++|...   ++.+++
T Consensus        22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~---~l~~~~   73 (149)
T 3gix_A           22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQTA---VYTQYF   73 (149)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTTCC---HHHHHT
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCcCH---HHHHHc
Confidence            5899999999 999999999999999999988543 899999997543   334555

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=98.44  E-value=1.1e-07  Score=77.55  Aligned_cols=47  Identities=13%  Similarity=-0.073  Sum_probs=35.0

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCCh
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ..+||+++|+|| ++||++|+...+.+   .++.+.+++ ++.++.|+.|..
T Consensus        44 ~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~   93 (172)
T 3f9u_A           44 RQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNK   93 (172)
T ss_dssp             HHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCC
T ss_pred             HHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcc
Confidence            357999999999 99999999863333   444444433 699999998753

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.43  E-value=4.7e-07  Score=69.83  Aligned_cols=66  Identities=9%  Similarity=-0.056  Sum_probs=49.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCc
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~  252 (276)
                      .++++||.|| +.||++|+...|.|.++++++.+. +.++.|+.|...   ...+++.-.   ++|.-++.+..
T Consensus        34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~---~l~~~~~v~---~~Pt~~~~~~~   99 (130)
T 2dml_A           34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKDV-VKVGAVNADKHQ---SLGGQYGVQ---GFPTIKIFGAN   99 (130)
T ss_dssp             CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTTT-SEEEEEETTTCH---HHHHHHTCC---SSSEEEEESSC
T ss_pred             CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcCc-eEEEEEeCCCCH---HHHHHcCCC---ccCEEEEEeCC
Confidence            4789999999 999999999999999999998643 889999988643   334455211   45555555543

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.42  E-value=3.4e-07  Score=68.80  Aligned_cols=46  Identities=11%  Similarity=0.179  Sum_probs=39.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++++++|.|| ++||++|+...|.|.+++++++..++.++.|+.|..
T Consensus        20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   65 (112)
T 3d6i_A           20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADEN   65 (112)
T ss_dssp             TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTC
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccC
Confidence            4899999999 999999999999999999997667899999999854

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.40  E-value=5e-09  Score=85.58  Aligned_cols=89  Identities=7%  Similarity=-0.092  Sum_probs=57.1

Q ss_pred             CCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhc
Q psy1172         159 LPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRD  238 (276)
Q Consensus       159 aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~  238 (276)
                      ++++...+.+ +.+.+. ..+||++||+|| ++|||+|+.++|.|+++.+.+. .++.++.|++|.....  ....+.- 
T Consensus        27 ~~~i~w~~~~-~~~~~~-~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~-~~~~~~~v~~d~~~~~--~~~~~~~-   99 (164)
T 1sen_A           27 GDHIHWRTLE-DGKKEA-AASGLPLMVIIH-KSWCGACKALKPKFAESTEISE-LSHNFVMVNLEDEEEP--KDEDFSP-   99 (164)
T ss_dssp             CTTSCBCCHH-HHHHHH-HHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEGGGSC--SCGGGCT-
T ss_pred             cccccccCHH-HHHHHH-HhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhh-cCCeEEEEEecCCchH--HHHHhcc-
Confidence            4455554444 344555 567999999999 9999999999999999766543 3577888888654320  1112210 


Q ss_pred             ccCCeeEEEeeCCcch
Q psy1172         239 CILGLLINLSVDDFKE  254 (276)
Q Consensus       239 ~~~~~~~~~l~D~~~~  254 (276)
                      .+..+|..++.|.++.
T Consensus       100 ~~~~~Pt~~~~d~~G~  115 (164)
T 1sen_A          100 DGGYIPRILFLDPSGK  115 (164)
T ss_dssp             TCSCSSEEEEECTTSC
T ss_pred             cCCcCCeEEEECCCCC
Confidence            0113576777776654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.38  E-value=8e-07  Score=71.72  Aligned_cols=67  Identities=19%  Similarity=0.305  Sum_probs=54.2

Q ss_pred             CCC-CceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHHHHHhhc
Q psy1172          17 GKL-PYPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l-~fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr~l~~lq   89 (276)
                      .++ +||+++| .++++++.||+.....    |+  ..|++||||++|+|++.+..+ .....+.+++++.|++|.
T Consensus        97 ~~~~~~~~~~d~~~~~~~~~~~v~~~~~----g~--~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A           97 NGIDKVETLSDHRDMSFGEAFGVYIKEL----RL--LARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             SSCTTEEEEEGGGTCHHHHHTTCBBTTT----CS--BCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             cCCCCceEeeCCchhHHHHHhCCccccC----Cc--eeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            567 8999999 9999999999875431    33  358999999999999999854 344557899999998874

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.38  E-value=9.9e-08  Score=72.19  Aligned_cols=46  Identities=7%  Similarity=0.086  Sum_probs=39.7

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ..++|++||.|| ++||++|+...|.+.++.+++  .++.++.|++|..
T Consensus        17 ~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~--~~~~~~~vd~d~~   62 (105)
T 3zzx_A           17 EAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSM--SDVVFLKVDVDEC   62 (105)
T ss_dssp             HTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTEEEEEEETTTC
T ss_pred             hcCCCEEEEEEE-CCCCCCccCCCcchhhhhhcc--CCeEEEEEecccC
Confidence            346789999999 999999999999999998887  4588888988754

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.38  E-value=5.6e-07  Score=67.90  Aligned_cols=45  Identities=9%  Similarity=-0.011  Sum_probs=40.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++++++|.|| ++||++|....|.|.++++++.+ ++.++.|+.|..
T Consensus        16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~   60 (112)
T 2voc_A           16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDEN   60 (112)
T ss_dssp             SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTTC
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCCC
Confidence            6899999999 99999999999999999999864 699999999854

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.37  E-value=9.6e-08  Score=72.97  Aligned_cols=68  Identities=13%  Similarity=0.109  Sum_probs=48.7

Q ss_pred             ccCCCCCcEEecCCCCeEEecc-cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         155 AAALLPGCSLLGCQASLVILEC-SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~-~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .|...+.+.+.+.++-...+.+ .-.+++++|.|| ++|||+|+...|.|+++.+++.+  +.++.|+.|..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~~   76 (122)
T 2vlu_A            8 AAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDEL   76 (122)
T ss_dssp             ----CCCEEECSHHHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTC
T ss_pred             cCCCCcceeccCHHHHHHHHHHhhccCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCCC
Confidence            5666777777655432222221 115889999999 99999999999999999998854  99999999864

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.37  E-value=2.9e-07  Score=70.17  Aligned_cols=53  Identities=6%  Similarity=0.003  Sum_probs=43.9

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +.+++++||.|| ++||++|+...|.|.++++++.+  +.++.|+.|...   ...+++
T Consensus        28 ~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~~~---~l~~~~   80 (116)
T 3qfa_C           28 AAGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDDCQ---DVASEC   80 (116)
T ss_dssp             HHTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTTTH---HHHHHT
T ss_pred             hcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCH---HHHHHc
Confidence            347899999999 99999999999999999998844  999999998643   344555

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.37  E-value=1.4e-06  Score=71.35  Aligned_cols=69  Identities=14%  Similarity=0.141  Sum_probs=52.2

Q ss_pred             CCC-CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEe-cCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKL-PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFL-YPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l-~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~-~~~~~~r~~~eilr~l~~l   88 (276)
                      .++ +||+++|+++++++.||+..... ...|.  +.|++||||++|+|++.+. ++.....+++++|+.+++-
T Consensus        96 ~~~~~~~~l~D~~~~~~~~~gv~~~~~-~~~g~--~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~  166 (175)
T 1xvq_A           96 EGTENVMPASAFRDSFGEDYGVTIADG-PMAGL--LARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGAT  166 (175)
T ss_dssp             ----CEEEEECTTSSHHHHTTCBBCSS-TTTTS--BCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHT
T ss_pred             cCCCCceEeeCCHHHHHHHhCCccccc-ccCCc--ccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhh
Confidence            567 89999999999999999875321 11233  5689999999999999997 3555666899999988743

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=4.8e-07  Score=69.57  Aligned_cols=46  Identities=7%  Similarity=0.025  Sum_probs=40.6

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++ ++||.|| ++||++|+..+|.|.++++++.+.++.++.|+.|..
T Consensus        21 ~~~-~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~   66 (126)
T 1x5e_A           21 LEG-DWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQ   66 (126)
T ss_dssp             TSS-EEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTC
T ss_pred             hCC-CEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCC
Confidence            344 4899999 999999999999999999999877899999998754

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.36  E-value=4.8e-07  Score=70.87  Aligned_cols=68  Identities=12%  Similarity=0.039  Sum_probs=50.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcch
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKE  254 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~  254 (276)
                      .++++||.|| ++||++|+...|.|.++++++.+ ++.++.|+.|...   +..+++.-   .++|.-++.|.++.
T Consensus        37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~---~l~~~~~v---~~~Pt~~~~~~~G~  104 (136)
T 2l5l_A           37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEKEQ---ELAGAFGI---RSIPSILFIPMEGK  104 (136)
T ss_dssp             CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCH---HHHHHTTC---CSSCEEEEECSSSC
T ss_pred             CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCCCH---HHHHHcCC---CCCCEEEEECCCCc
Confidence            4689999999 99999999999999999999864 4999999998643   33444411   14565566665554

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=3.9e-07  Score=71.40  Aligned_cols=47  Identities=6%  Similarity=-0.034  Sum_probs=41.7

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      -++++++|.|| ++||++|+...|.|+++++++.+.++.++.|+.|..
T Consensus        24 ~~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~   70 (137)
T 2dj0_A           24 DKRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRY   70 (137)
T ss_dssp             STTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTC
T ss_pred             CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccC
Confidence            35679999999 999999999999999999999766799999988753

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.35  E-value=5.3e-07  Score=71.67  Aligned_cols=45  Identities=9%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|+|| ++||++|+...|.|+++++++++ .+.++.|++|..
T Consensus        22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~   66 (142)
T 1qgv_A           22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV   66 (142)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccC
Confidence            4899999999 99999999999999999999854 489999998854

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.34  E-value=6.1e-07  Score=73.39  Aligned_cols=70  Identities=14%  Similarity=0.108  Sum_probs=50.2

Q ss_pred             CCCC--ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLP--YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~--fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+++  ||+|+|++++++++||+...... ..|...+.|+|||| ++|+|++++.++...++++...-.+++.|
T Consensus        88 ~~~~~~fp~l~D~~~~~~~~~gv~~~~~~-~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~~~~~~~~~~~~~~~  159 (167)
T 2wfc_A           88 HGADDKVQMLADPGGAFTKAVDMELDLSA-VLGNVRSKRYSLVI-EDGVVTKVNVEPDGKGLTCSLAPNILSQL  159 (167)
T ss_dssp             TTCTTTSEEEECTTSHHHHHTTCEECCHH-HHSSCEECCEEEEE-ETTEEEEEEECTTSSSSSTTSHHHHHHHH
T ss_pred             cCCCcceEEEECCCCcHHHHcCCcccccc-ccCcccceEEEEEE-eCCEEEEEEecCCCCcceeccHHHHHHHh
Confidence            3477  99999999999999998743110 00212256999999 99999999998887777654444444444

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.33  E-value=8.4e-07  Score=66.54  Aligned_cols=44  Identities=11%  Similarity=0.125  Sum_probs=39.6

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+|++++|.|| ++|||+|+...|.|.++++++.  ++.++.|+.++
T Consensus        22 ~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~   65 (111)
T 2pu9_C           22 AGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ   65 (111)
T ss_dssp             CTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS
T ss_pred             cCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc
Confidence            46899999999 9999999999999999999884  59999999873

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.32  E-value=7.6e-07  Score=66.70  Aligned_cols=45  Identities=9%  Similarity=0.101  Sum_probs=40.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| ++|||+|+...|.|.++++++.+ .+.++.|+.|..
T Consensus        22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~   66 (112)
T 1t00_A           22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDEN   66 (112)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC
T ss_pred             CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCCC
Confidence            4789999999 99999999999999999999864 499999999864

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.32  E-value=7.9e-07  Score=65.64  Aligned_cols=46  Identities=11%  Similarity=0.135  Sum_probs=41.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      ++++++|.|| ++|||+|+...|.++++++++.++ +.++.|+.|...
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~   63 (106)
T 3die_A           18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVDENP   63 (106)
T ss_dssp             CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTCH
T ss_pred             cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCcCH
Confidence            7899999999 999999999999999999998654 999999998643

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.31  E-value=6.7e-07  Score=67.27  Aligned_cols=51  Identities=8%  Similarity=0.087  Sum_probs=42.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++|++||.|| ++||++|+...|.|+++++++  .++.++.|+.|...   ...+++
T Consensus        23 ~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~--~~~~~~~vd~~~~~---~l~~~~   73 (109)
T 3f3q_A           23 QDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQY--PQADFYKLDVDELG---DVAQKN   73 (109)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTCH---HHHHHT
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHC--CCCEEEEEECCCCH---HHHHHc
Confidence            5899999999 999999999999999999988  45899999988543   334455

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.31  E-value=7.2e-07  Score=68.92  Aligned_cols=67  Identities=7%  Similarity=-0.036  Sum_probs=49.3

Q ss_pred             cCCCCCcEEecCCCCeEEecc-cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         156 AALLPGCSLLGCQASLVILEC-SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       156 G~~aPdF~L~~~~G~~v~l~~-~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++..+-+++.+.++-...+.. ..+++++||.|| ++|||+|+...|.|+++++++.  ++.++.|+.|..
T Consensus        13 ~~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~~   80 (124)
T 1xfl_A           13 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDEL   80 (124)
T ss_dssp             CCCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTS
T ss_pred             cCCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECccC
Confidence            344455666554432222221 236899999999 9999999999999999999884  799999998854

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.30  E-value=1.1e-07  Score=74.53  Aligned_cols=59  Identities=7%  Similarity=0.020  Sum_probs=44.1

Q ss_pred             cEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         162 CSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       162 F~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++.+.++-...++ ..+|+++||.|| ++||++|+...|.|+++.+++   ++.++.|+.|..
T Consensus        23 ~~l~~~~~~~~~l~-~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~~   81 (133)
T 3cxg_A           23 IELKNTGSLNQVFS-STQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDIH   81 (133)
T ss_dssp             EECCCTTHHHHHHT-C-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTTC
T ss_pred             EEecChhHHHHHHH-hcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccch
Confidence            44444444333444 567899999999 999999999999999877765   588888888754

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.29  E-value=8.9e-07  Score=65.43  Aligned_cols=45  Identities=9%  Similarity=0.031  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| ++|||+|+...|.|+++.+++.++ +.++.|+.|..
T Consensus        16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~~   60 (105)
T 1nsw_A           16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDEN   60 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTTT-CEEEEEETTTC
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECcCC
Confidence            5789999999 999999999999999999988643 89999998864

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.29  E-value=9.9e-07  Score=65.96  Aligned_cols=51  Identities=10%  Similarity=0.051  Sum_probs=43.1

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +++++|.|| ++|||+|+...|.|+++++++.+ ++.++.|+.|...   ...+++
T Consensus        24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~---~~~~~~   74 (112)
T 1ep7_A           24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVA---AVAEAA   74 (112)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTH---HHHHHH
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCchH---HHHHHc
Confidence            889999999 99999999999999999999864 7999999998643   334455

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=8.7e-07  Score=68.39  Aligned_cols=46  Identities=9%  Similarity=-0.013  Sum_probs=40.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh---CCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ---RTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~---~gv~Vv~VS~D~~  225 (276)
                      .++++||.|| +.||++|+...|.|.++++++.+   .++.++.|+.+..
T Consensus        24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~   72 (133)
T 1x5d_A           24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN   72 (133)
T ss_dssp             SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC
T ss_pred             CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC
Confidence            4789999999 99999999999999999999973   4589999988754

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.28  E-value=1e-06  Score=65.55  Aligned_cols=44  Identities=2%  Similarity=-0.001  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++++++|.|| ++||++|+...|.|.++++++  .++.++.|+.|..
T Consensus        20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~--~~~~~~~vd~~~~   63 (107)
T 1gh2_A           20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKY--PQAVFLEVDVHQC   63 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTS
T ss_pred             CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHC--CCcEEEEEECccC
Confidence            6899999999 999999999999999999988  4699999999854

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.28  E-value=1e-06  Score=67.41  Aligned_cols=77  Identities=9%  Similarity=-0.005  Sum_probs=53.4

Q ss_pred             ecCCCCeEEecccC--CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCC
Q psy1172         165 LGCQASLVILECSI--PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG  242 (276)
Q Consensus       165 ~~~~G~~v~l~~~~--~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~  242 (276)
                      .+.+|....+.+.+  .++++||.|| ++||++|+...|.|.++++++  .++.++.|+.|...   ...+++.-.   +
T Consensus         6 ~~~~g~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~---~~~~~~~i~---~   76 (118)
T 2f51_A            6 VHFNGTHEALLNRIKEAPGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDKNG---NAADAYGVS---S   76 (118)
T ss_dssp             EEECSCHHHHHHHHHHCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTCH---HHHHHTTCC---S
T ss_pred             eEecCCHHHHHHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCCCH---HHHHhcCCC---C
Confidence            34455444443222  4889999999 999999999999999999988  67999999998543   234444211   4


Q ss_pred             eeEEEeeC
Q psy1172         243 LLINLSVD  250 (276)
Q Consensus       243 ~~~~~l~D  250 (276)
                      +|.-++.+
T Consensus        77 ~Pt~~~~~   84 (118)
T 2f51_A           77 IPALFFVK   84 (118)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEe
Confidence            45545544

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.28  E-value=1.1e-06  Score=65.15  Aligned_cols=45  Identities=13%  Similarity=0.155  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| ++|||+|....|.|+++++++.+ .+.++.|+.|..
T Consensus        18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~   62 (107)
T 1dby_A           18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDES   62 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC
T ss_pred             CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC
Confidence            4789999999 99999999999999999998864 499999998754

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.28  E-value=5.8e-07  Score=70.23  Aligned_cols=46  Identities=9%  Similarity=0.027  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~~  225 (276)
                      .++++||.|| +.||++|+...|.|.++++++.+.+  +.++.|+.+..
T Consensus        33 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~   80 (140)
T 2dj1_A           33 DKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA   80 (140)
T ss_dssp             TCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc
Confidence            5789999999 9999999999999999999998764  77777777643

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.27  E-value=6e-07  Score=68.83  Aligned_cols=46  Identities=4%  Similarity=-0.080  Sum_probs=42.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++++++|.|| ++|||+|....+.|+++.+++.++++.++.|+.|..
T Consensus        32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~   77 (121)
T 2j23_A           32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQ   77 (121)
T ss_dssp             SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTC
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCC
Confidence            5789999999 999999999999999999999877899999999864

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.27  E-value=8.2e-07  Score=65.44  Aligned_cols=45  Identities=16%  Similarity=0.140  Sum_probs=39.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| ++|||+|....+.|.++++++.+ .+.++.|+.|..
T Consensus        17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~   61 (105)
T 1fb6_A           17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEA   61 (105)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC
T ss_pred             CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcch
Confidence            4789999999 99999999999999999998854 489999998754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.27  E-value=6.4e-07  Score=78.80  Aligned_cols=46  Identities=13%  Similarity=0.172  Sum_probs=41.1

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      -+|++|||+|| ++||++|+...|.|.++++++.+ .+.++.|++|..
T Consensus        24 ~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~   69 (287)
T 3qou_A           24 SMTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAE   69 (287)
T ss_dssp             TTTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTC
T ss_pred             cCCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccC
Confidence            35899999999 99999999999999999999964 499999999853

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.26  E-value=1.3e-06  Score=66.74  Aligned_cols=44  Identities=14%  Similarity=0.211  Sum_probs=39.6

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+|++++|.|| ++|||+|+...|.|+++++++.  ++.++.|+.++
T Consensus        35 ~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~   78 (124)
T 1faa_A           35 AGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ   78 (124)
T ss_dssp             TTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS
T ss_pred             cCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc
Confidence            47899999999 9999999999999999999884  68999999873

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.26  E-value=4e-06  Score=71.32  Aligned_cols=53  Identities=13%  Similarity=0.102  Sum_probs=43.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++++|.|| +.||++|+...|.+.++++++.+++  +.++.|+.+...   +..+++
T Consensus       146 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~  200 (241)
T 3idv_A          146 DADIILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET---DLAKRF  200 (241)
T ss_dssp             HCSEEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCH---HHHHHT
T ss_pred             cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCH---HHHHHc
Confidence            3578999999 9999999999999999999998654  888888887533   345555

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.25  E-value=1.7e-06  Score=64.71  Aligned_cols=45  Identities=13%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.|||+|....|.|.++.+++.++ +.++.|+.|..
T Consensus        24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~~   68 (115)
T 1thx_A           24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDPN   68 (115)
T ss_dssp             CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTTC
T ss_pred             CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEcCCC
Confidence            5789999999 999999999999999999998654 99999999854

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.25  E-value=1.2e-06  Score=70.24  Aligned_cols=66  Identities=24%  Similarity=0.396  Sum_probs=48.1

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC---CCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT---TGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~---~~r~~~eilr~l~~lq   89 (276)
                      ++++||+++|+++++++.||+.....   .|   ..|++||| ++|+|++.+.....   ..+.+++|++.|++|+
T Consensus        89 ~~~~~~~l~D~~~~~~~~~gv~~~p~---~g---~~~~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l~  157 (159)
T 2a4v_A           89 QNLPYHLLSDPKREFIGLLGAKKTPL---SG---SIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK  157 (159)
T ss_dssp             HTCSSEEEECTTCHHHHHHTCBSSSS---SC---BCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCCceEEECCccHHHHHhCCccccc---CC---ccceEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHhh
Confidence            34899999999999999999974321   13   36899999 99999999973221   2344566666666654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.24  E-value=8.8e-07  Score=75.43  Aligned_cols=54  Identities=7%  Similarity=0.004  Sum_probs=45.2

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCChHHHHHHHHHH
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+|++++|.|| ++||++|+..+|.|.++++++++.+  +.++.|+.|...   +..+++
T Consensus        30 ~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~   85 (241)
T 3idv_A           30 ADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS---VLASRF   85 (241)
T ss_dssp             TTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH---HHHHHT
T ss_pred             hcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH---HHHHhc
Confidence            46899999999 9999999999999999999998776  888888887543   344555

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.24  E-value=1.3e-06  Score=68.37  Aligned_cols=52  Identities=6%  Similarity=0.065  Sum_probs=43.7

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+|+++||.|| ++||++|+...|.|+++++++  .++.++.|+.|...   +..+++
T Consensus        44 ~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~v~~~~~~---~~~~~~   95 (139)
T 3d22_A           44 RDGKIVLANFS-ARWCGPSRQIAPYYIELSENY--PSLMFLVIDVDELS---DFSASW   95 (139)
T ss_dssp             HHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTSH---HHHHHT
T ss_pred             hcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCCEEEEEeCcccH---HHHHHc
Confidence            46899999999 999999999999999999987  47999999998643   344555

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.24  E-value=6.1e-07  Score=66.82  Aligned_cols=45  Identities=16%  Similarity=0.295  Sum_probs=39.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      ++++++|.|| ++||++|+...|.|+++++++  .++.++.|+.|...
T Consensus        17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~--~~~~~~~vd~~~~~   61 (105)
T 4euy_A           17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENY--NYVEKIEILLQDMQ   61 (105)
T ss_dssp             CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTC--TTEEEEEEEECCC-
T ss_pred             cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHc--CCceEEEEECCCCH
Confidence            5789999999 999999999999999999988  36999999987543

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.24  E-value=1.2e-06  Score=66.71  Aligned_cols=44  Identities=9%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +|+++||.|| ++||++|+...|.|+++++++.+  +.++.|+.|..
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~~   72 (114)
T 2oe3_A           29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDES   72 (114)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTTC
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCC
Confidence            5789999999 99999999999999999998854  99999998854

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.24  E-value=1.7e-06  Score=63.85  Aligned_cols=45  Identities=13%  Similarity=0.098  Sum_probs=40.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.||++|+...+.|.++.+++.+ ++.++.|+.|..
T Consensus        19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~   63 (107)
T 2i4a_A           19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDN   63 (107)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTC
T ss_pred             CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCCC
Confidence            5789999999 99999999999999999999864 699999998754

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.23  E-value=1.9e-06  Score=65.59  Aligned_cols=46  Identities=7%  Similarity=0.054  Sum_probs=40.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .+++++|.|| ++||++|+...|.|.++++++.+ ++.++.|+.+...
T Consensus        20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~   65 (122)
T 3aps_A           20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAYP   65 (122)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCH
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCCH
Confidence            4789999999 99999999999999999999864 6999999987643

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.23  E-value=1.7e-06  Score=65.97  Aligned_cols=52  Identities=10%  Similarity=0.080  Sum_probs=43.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++++||.|| +.||++|+...+.|+++++++.. ++.++.|+.|...   ++.+++
T Consensus        30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~~~---~l~~~~   81 (119)
T 1w4v_A           30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDDHT---DLAIEY   81 (119)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTTTH---HHHHHT
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCH---HHHHHc
Confidence            4789999999 99999999999999999998854 5999999998643   344445

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.22  E-value=2e-06  Score=63.41  Aligned_cols=46  Identities=13%  Similarity=0.221  Sum_probs=41.0

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .++++++|.|| ++|||+|....|.|+++.++++ .++.++.|+.|..
T Consensus        18 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~~   63 (106)
T 1xwb_A           18 ASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDEC   63 (106)
T ss_dssp             HTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTTC
T ss_pred             cCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccch
Confidence            46899999999 9999999999999999999885 5699999999854

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.22  E-value=1.7e-06  Score=63.60  Aligned_cols=45  Identities=13%  Similarity=0.111  Sum_probs=40.6

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ..+++++|.|| ++|||+|....+.|.++.+++.  ++.++.|+.|..
T Consensus        17 ~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~   61 (104)
T 2vim_A           17 NKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQN   61 (104)
T ss_dssp             TTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTC
T ss_pred             cCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccCC
Confidence            46899999999 9999999999999999999874  799999999864

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.22  E-value=1.6e-06  Score=63.94  Aligned_cols=46  Identities=7%  Similarity=0.073  Sum_probs=40.6

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ..++++++|.|| ++|||+|+...|.+.++.+++.  ++.++.|+.|..
T Consensus        17 ~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~   62 (105)
T 3m9j_A           17 AAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDC   62 (105)
T ss_dssp             HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTTC
T ss_pred             hcCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhhh
Confidence            346899999999 9999999999999999999884  499999998854

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.21  E-value=2.6e-06  Score=65.62  Aligned_cols=53  Identities=11%  Similarity=0.014  Sum_probs=42.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh----CCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ----RTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~----~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++++|.|| ++||++|+...|.|.++++++..    .++.++.|+.|...   +..+++
T Consensus        32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~   88 (127)
T 3h79_A           32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP---DVIERM   88 (127)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH---HHHHHT
T ss_pred             CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH---hHHHhc
Confidence            4789999999 99999999999999999998863    34788888887533   344555

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.21  E-value=1.2e-06  Score=66.40  Aligned_cols=45  Identities=9%  Similarity=0.120  Sum_probs=40.0

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ..++++++|.|| ++||++|+...|.|+++++++   ++.++.|+.|..
T Consensus        30 ~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~~   74 (117)
T 2xc2_A           30 QHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDKL   74 (117)
T ss_dssp             HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTTS
T ss_pred             hCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCcc
Confidence            357899999999 999999999999999988877   799999998854

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.21  E-value=1.7e-06  Score=64.26  Aligned_cols=45  Identities=11%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| ++||++|+...|.|+++++++.+ .+.++.|+.|..
T Consensus        19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~   63 (108)
T 2trx_A           19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN   63 (108)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCCC
Confidence            5789999999 99999999999999999998854 489999998754

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.21  E-value=5.7e-07  Score=72.51  Aligned_cols=45  Identities=2%  Similarity=0.010  Sum_probs=40.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .++++||.|| +.||++|+...|.|+++++++.+ .+.++.|+.|..
T Consensus        63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~  107 (155)
T 2ppt_A           63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAH  107 (155)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTS
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCcc
Confidence            5789999999 99999999999999999999965 499999999854

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.19  E-value=3.8e-06  Score=63.73  Aligned_cols=53  Identities=8%  Similarity=0.134  Sum_probs=41.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh---HHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV---ESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~---~~~~~~~~~~  235 (276)
                      .|++++|+|| ++|||+|+...|.|.++++++.   ..|+.++++..   .....+.+++
T Consensus        28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~   83 (118)
T 1zma_A           28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLNDLQAFRSRY   83 (118)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHHHHHHHHHHH
T ss_pred             CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcHHHHHHHHHHc
Confidence            4789999999 9999999999999999988763   45677766643   3344555666

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.18  E-value=2.4e-06  Score=64.27  Aligned_cols=45  Identities=13%  Similarity=0.096  Sum_probs=40.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      +|++++|.|| +.||++|....|.|.++++++.  ++.++.|+.|...
T Consensus        25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~   69 (112)
T 1syr_A           25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVS   69 (112)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTTH
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCCCH
Confidence            5789999999 9999999999999999999874  6999999998643

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.18  E-value=1.7e-06  Score=67.28  Aligned_cols=45  Identities=9%  Similarity=-0.001  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++++++|.|| ++||++|+...|.|+++++++.+ ++.++.|+.|..
T Consensus        39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~   83 (128)
T 2o8v_B           39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQN   83 (128)
T ss_dssp             CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTC
T ss_pred             cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCC
Confidence            5789999999 99999999999999999998854 499999998753

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.17  E-value=1.7e-06  Score=69.22  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=47.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVD  250 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D  250 (276)
                      +++++||.|| +.||++|+...|.|.++++++  .++.++.|+.|...   ...+++.-   .++|.-++.+
T Consensus        31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~~~~~---~l~~~~~v---~~~Pt~~~~~   93 (153)
T 2wz9_A           31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKEL--PQVSFVKLEAEGVP---EVSEKYEI---SSVPTFLFFK   93 (153)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTSH---HHHHHTTC---CSSSEEEEEE
T ss_pred             CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHc--CCeEEEEEECCCCH---HHHHHcCC---CCCCEEEEEE
Confidence            5899999999 999999999999999999987  47999999998643   23444411   1445555544

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.17  E-value=2e-06  Score=66.62  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++++||.|| ++||++|....|.|.++++++  .++.++.|+.|..
T Consensus        36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~d~~   79 (125)
T 1r26_A           36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEF--PTVKFAKVDADNN   79 (125)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHC--TTSEEEEEETTTC
T ss_pred             cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHC--CCCEEEEEECCCC
Confidence            6789999999 999999999999999999988  4699999999854

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.17  E-value=2.4e-06  Score=62.44  Aligned_cols=44  Identities=11%  Similarity=0.141  Sum_probs=39.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++++++|.|| ++|||+|....+.|.++.+++.+  +.++.|+.|..
T Consensus        15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~~   58 (104)
T 2e0q_A           15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDEN   58 (104)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTC
T ss_pred             cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCCC
Confidence            5789999999 99999999999999999998854  99999998864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.17  E-value=4.9e-07  Score=76.24  Aligned_cols=65  Identities=9%  Similarity=-0.032  Sum_probs=50.4

Q ss_pred             CCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         159 LPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       159 aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .+++.+.+.++..+... ..+++++||.|| ++||++|....|.+.++++++.+ .+.++.|+.|...
T Consensus        94 ~~~~~v~~l~~~~f~~~-~~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~~  158 (210)
T 3apq_A           94 DDDPEIITLERREFDAA-VNSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDDR  158 (210)
T ss_dssp             TTCTTSEECCHHHHHHH-HHHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCH
T ss_pred             CCCCceEEecHHHHHHH-HccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCccH
Confidence            35555556665544433 246899999999 99999999999999999999854 4899999987643

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.16  E-value=2.9e-06  Score=62.78  Aligned_cols=52  Identities=6%  Similarity=0.046  Sum_probs=43.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++++|.|| +.|||+|....|.|+++.+++.+ .+.++.|+.|...   ...+++
T Consensus        20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~---~~~~~~   71 (109)
T 3tco_A           20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDENQ---KIADKY   71 (109)
T ss_dssp             HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCH---HHHHHT
T ss_pred             cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccccCH---HHHHhc
Confidence            4899999999 99999999999999999999864 5899999988543   334455

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.16  E-value=2.5e-06  Score=69.29  Aligned_cols=45  Identities=11%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++|||.|| |+||++|+...|-|.++.+++.+ .+.++-|++|..
T Consensus        40 ~~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe~   84 (160)
T 2av4_A           40 DERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITEV   84 (160)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCCC
Confidence            4689999999 99999999999999999999843 378999999854

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.15  E-value=2.8e-06  Score=63.49  Aligned_cols=44  Identities=14%  Similarity=0.239  Sum_probs=39.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| ++||++|....+.|+++.+++.  ++.++.|+.|..
T Consensus        25 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~   68 (113)
T 1ti3_A           25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDEL   68 (113)
T ss_dssp             SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTC
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEcccc
Confidence            5899999999 9999999999999999998874  799999998854

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.14  E-value=1.6e-05  Score=72.21  Aligned_cols=45  Identities=4%  Similarity=-0.030  Sum_probs=38.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~D~  224 (276)
                      .+++++|.|| +.||++|+..+|.+.+++++|+++ ++.++.|..+.
T Consensus       266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~  311 (361)
T 3uem_A          266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA  311 (361)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTT
T ss_pred             CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCc
Confidence            5789999999 999999999999999999999765 46677776653

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.14  E-value=3.6e-06  Score=66.15  Aligned_cols=52  Identities=10%  Similarity=-0.009  Sum_probs=43.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++++||.|| +.||++|+...|.|.++++++.+ .+.++.|+.|...   ...+++
T Consensus        23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~---~l~~~~   74 (140)
T 3hz4_A           23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIATNP---WTAEKY   74 (140)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTCH---HHHHHH
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCcCH---hHHHHC
Confidence            4789999999 99999999999999999999965 4999999988643   334455

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.14  E-value=2.8e-06  Score=63.98  Aligned_cols=44  Identities=11%  Similarity=0.146  Sum_probs=39.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.|||+|+...|.|+++.+++.  ++.++.|+.|..
T Consensus        27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~   70 (118)
T 2vm1_A           27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDEL   70 (118)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTS
T ss_pred             CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcccC
Confidence            4889999999 9999999999999999999884  799999998853

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.14  E-value=3.2e-06  Score=62.89  Aligned_cols=52  Identities=8%  Similarity=0.105  Sum_probs=43.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++++|.|| +.||++|+...|.|.++.+++.+ .+.++.|+.|...   ...+++
T Consensus        21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~---~l~~~~   72 (111)
T 3gnj_A           21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEEK---TLFQRF   72 (111)
T ss_dssp             SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCH---HHHHHT
T ss_pred             cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCcCh---hHHHhc
Confidence            5789999999 99999999999999999999854 5999999998643   334455

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.13  E-value=1.7e-06  Score=66.56  Aligned_cols=44  Identities=14%  Similarity=0.160  Sum_probs=39.1

Q ss_pred             CCCCeEEEEEEcCC-------CCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         178 IPAFWGILFSHPSD-------FTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       178 ~~gk~vvL~f~pa~-------~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .+|++++|.|| ++       |||+|+...|.|.++++++.+ ++.++.|+++
T Consensus        22 ~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~   72 (123)
T 1wou_A           22 HNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVG   72 (123)
T ss_dssp             TTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECC
T ss_pred             hCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECC
Confidence            35899999999 99       999999999999999888743 6999999995

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.11  E-value=1.5e-06  Score=68.00  Aligned_cols=53  Identities=17%  Similarity=0.240  Sum_probs=41.6

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh------HHHHHHHHHH
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV------ESHHDWIKAL  235 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~------~~~~~~~~~~  235 (276)
                      +++ +++|+|| ++||++|+.++|.|.++++++.   +.++.|+.++.      .......+++
T Consensus        30 ~~~-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~~~d~~~~l~~~~   88 (135)
T 3emx_A           30 LQG-DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGERELSAARLEMNKA   88 (135)
T ss_dssp             HTS-SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             hCC-cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhhhhhhhHHHHHHc
Confidence            345 9999999 9999999999999999988874   88999988543      3334445555

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.10  E-value=4.6e-06  Score=61.51  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.|||+|....+.|.++.+++.+ ++.++.|+.|..
T Consensus        17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~   61 (109)
T 2yzu_A           17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDEN   61 (109)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTC
T ss_pred             CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCCC
Confidence            4789999999 99999999999999999998854 599999998754

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=98.09  E-value=3.4e-06  Score=64.92  Aligned_cols=76  Identities=11%  Similarity=0.022  Sum_probs=50.7

Q ss_pred             EEecccCCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEe
Q psy1172         172 VILECSIPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLS  248 (276)
Q Consensus       172 v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l  248 (276)
                      +.++ ..+||++||.|| ++|||+|+...+.+   .++.+.+ ..++.++.|+.|... ...+.+++.-.   ++|..++
T Consensus        20 ~~~~-~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~-~~~~~~~~~v~---~~Pt~~~   92 (130)
T 2kuc_A           20 LKRA-EVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYF-NRHFVNLKMDMEKGE-GVELRKKYGVH---AYPTLLF   92 (130)
T ss_dssp             HHHH-HHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHH-HHHSEEEEECSSSTT-HHHHHHHTTCC---SSCEEEE
T ss_pred             HHHH-HhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHH-hcCeEEEEEecCCcc-hHHHHHHcCCC---CCCEEEE
Confidence            4444 457899999999 99999999999998   5555444 345788888877421 23445555211   4566666


Q ss_pred             eCCcch
Q psy1172         249 VDDFKE  254 (276)
Q Consensus       249 ~D~~~~  254 (276)
                      .|.++.
T Consensus        93 ~d~~G~   98 (130)
T 2kuc_A           93 INSSGE   98 (130)
T ss_dssp             ECTTSC
T ss_pred             ECCCCc
Confidence            665554

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.08  E-value=3.1e-06  Score=71.99  Aligned_cols=45  Identities=11%  Similarity=0.099  Sum_probs=40.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++++||.|| ++||++|+..+|.|.++++++.++ +.++.|+.|..
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~   73 (222)
T 3dxb_A           29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQN   73 (222)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTC
T ss_pred             cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCCC
Confidence            5789999999 999999999999999999998654 89999999854

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.08  E-value=2.5e-06  Score=63.43  Aligned_cols=53  Identities=11%  Similarity=0.056  Sum_probs=42.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++++|.|| ++||++|+...|.|.++.+++...  ++.++.|+.|...   ...+++
T Consensus        20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~   74 (111)
T 3uvt_A           20 AEGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER---NICSKY   74 (111)
T ss_dssp             HSSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH---HHHHHT
T ss_pred             cCCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH---hHHHhc
Confidence            4789999999 999999999999999998887543  6888899887543   334555

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.07  E-value=2.8e-06  Score=66.62  Aligned_cols=44  Identities=16%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +|+++||.|| ++||++|+...|.|.++++++  .++.++.|+.+..
T Consensus        29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~~~~   72 (135)
T 2dbc_A           29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKF--PETKFVKAIVNSC   72 (135)
T ss_dssp             SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHC--SSEEEEEECCSSS
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHC--CCcEEEEEEhhcC
Confidence            4579999999 999999999999999999987  4688889988753

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.07  E-value=5.3e-06  Score=62.76  Aligned_cols=45  Identities=11%  Similarity=0.036  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.||++|+...+.|.++.+++.. ++.++.|+.|..
T Consensus        29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~   73 (121)
T 2i1u_A           29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDTN   73 (121)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC
T ss_pred             CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC
Confidence            4789999999 99999999999999999998854 599999999854

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.02  E-value=7.5e-06  Score=70.42  Aligned_cols=67  Identities=9%  Similarity=0.026  Sum_probs=49.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh--CCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ--RTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVD  250 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~--~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D  250 (276)
                      .+++++|.|| ++||++|+..+|.+.++++++.+  .++.++.|+.+... ..+.++++.-.   ++|.-++.+
T Consensus        29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~~l~~~~~v~---~~Pt~~~~~   97 (244)
T 3q6o_A           29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET-NSAVCRDFNIP---GFPTVRFFX   97 (244)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT-THHHHHHTTCC---SSSEEEEEC
T ss_pred             CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh-hHHHHHHcCCC---ccCEEEEEe
Confidence            4589999999 99999999999999999999976  47999999985322 23445555211   445444444

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.02  E-value=6.4e-06  Score=68.88  Aligned_cols=85  Identities=7%  Similarity=0.057  Sum_probs=50.2

Q ss_pred             CCCCceEEEe---CccHHHHHhCCCCCC--C---CCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIAD---QDRSLAVQLGMLDPV--E---KDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD---~~~~va~~yG~~~~~--~---~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+++|+.+.+   ..+++++.||+....  .   .....+. ..+++||||++|+|+..+....+.....++|.+.|+++
T Consensus       103 ~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~-~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l  181 (200)
T 2b7k_A          103 FHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVD-HSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY  181 (200)
T ss_dssp             SCTTCEEEECCHHHHHHHHHHTTC--------------CTT-TCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred             cCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceee-ecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            5588998874   467899999986211  0   0000011 34799999999999999876666666678888888888


Q ss_pred             cccccCCCCcCCCCC
Q psy1172          89 QLTDTKKVATPVDWK  103 (276)
Q Consensus        89 q~~~~~~~~~p~~w~  103 (276)
                      +. ......|+++|-
T Consensus       182 ~~-~~~~~~~~~~~~  195 (200)
T 2b7k_A          182 VP-AEQRAKQKEAWY  195 (200)
T ss_dssp             CC-C-----------
T ss_pred             hh-hhhcchhHHHHH
Confidence            74 456678899985

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.99  E-value=4.5e-06  Score=62.74  Aligned_cols=43  Identities=12%  Similarity=0.174  Sum_probs=37.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      ++++++|.|| ++|||+|....|.|.++.+++.  ++.++.|+.+.
T Consensus        18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~   60 (110)
T 2l6c_A           18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA   60 (110)
T ss_dssp             TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG
T ss_pred             cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC
Confidence            5789999999 9999999999999999888763  68899988764

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=97.98  E-value=3.3e-05  Score=58.76  Aligned_cols=56  Identities=23%  Similarity=0.221  Sum_probs=46.8

Q ss_pred             CCC-CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKL-PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l-~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .++ +||++.|.++++++.||+.        +    .+++||||++|+|+..+...    .+.+++.+.|++|
T Consensus        81 ~~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~l  137 (138)
T 4evm_A           81 LDYKNLPVLVDPSGKLLETYGVR--------S----YPTQAFIDKEGKLVKTHPGF----MEKDAILQTLKEL  137 (138)
T ss_dssp             CCCTTCCEEECTTCHHHHHTTCC--------S----SSEEEEECTTCCEEEEEESC----CCHHHHHHHHHHC
T ss_pred             cCCCCeeEEECcchHHHHHcCcc--------c----CCeEEEECCCCcEEEeecCC----CcHHHHHHHHHhh
Confidence            456 9999999999999999974        3    36999999999999988743    3578888888876

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=97.21  E-value=1e-06  Score=68.03  Aligned_cols=76  Identities=16%  Similarity=0.161  Sum_probs=51.5

Q ss_pred             CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeE
Q psy1172         169 ASLVILECSIPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLI  245 (276)
Q Consensus       169 G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~  245 (276)
                      .+.+.+. ..+||++||+|| ++||++|+...|.+   .++.+.+.. ++.++.|+.|..+ ...+.+.+.-.   ++|.
T Consensus         9 ~~~~~~~-~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~-~~~~~~~~~v~---~~Pt   81 (130)
T 2lst_A            9 PEALALA-QAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTPE-GQELARRYRVP---GTPT   81 (130)
Confidence            4455666 568899999999 99999999999999   777777643 5788888875432 23344444111   3455


Q ss_pred             EEeeCC
Q psy1172         246 NLSVDD  251 (276)
Q Consensus       246 ~~l~D~  251 (276)
                      -++.|.
T Consensus        82 ~~~~d~   87 (130)
T 2lst_A           82 FVFLVP   87 (130)
Confidence            555553

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.96  E-value=9.5e-06  Score=57.33  Aligned_cols=43  Identities=16%  Similarity=0.128  Sum_probs=37.3

Q ss_pred             CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .++++.|| ++|||+|+...|.|+++++++. .++.++.|+.|..
T Consensus         3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~   45 (85)
T 1fo5_A            3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVMEN   45 (85)
T ss_dssp             CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCS-SSEEEEEEESSSS
T ss_pred             ceEEEEEe-CCCCCchHHHHHHHHHHHHHcC-CceEEEEEECCCC
Confidence            46889999 9999999999999999998875 4699999998753

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.19  E-value=1.1e-06  Score=64.44  Aligned_cols=45  Identities=18%  Similarity=0.182  Sum_probs=38.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.|||+|....+.++++.+++.+ ++.++.|+.|..
T Consensus        18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~   62 (106)
T 2yj7_A           18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDEN   62 (106)
Confidence            4789999999 99999999999999999998864 588888887743

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=97.94  E-value=3.9e-05  Score=60.67  Aligned_cols=57  Identities=19%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             CCCCceEEEeCcc-----HHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDR-----SLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~-----~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||++.|.++     ++++.||+.        ++    +++||||++|+|+..+....    +.+++.+.|++|-
T Consensus        90 ~~~~~~~~~d~~~~~~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~ll  151 (158)
T 3eyt_A           90 YRIKFPVGVDQPGDGAMPRTMAAYQMR--------GT----PSLLLIDKAGDLRAHHFGDV----SELLLGAEIATLL  151 (158)
T ss_dssp             TTCCSCEEEECCCSSSSCHHHHHTTCC--------SS----SEEEEECTTSEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             cCCCceEEEcCccchhhHHHHHHcCCC--------CC----CEEEEECCCCCEEEEEeCCC----CHHHHHHHHHHHh
Confidence            5689999999998     799999984        33    59999999999999887543    4788888888774

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=97.94  E-value=1.3e-05  Score=62.64  Aligned_cols=44  Identities=14%  Similarity=0.149  Sum_probs=38.2

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++.+||.|| +.||++|....|.|+++++++.+ ++.++.|+.|..
T Consensus        50 ~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~   93 (140)
T 1v98_A           50 APLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEH   93 (140)
T ss_dssp             CCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC
T ss_pred             CCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCCC
Confidence            444999999 99999999999999999999864 599999998854

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.90  E-value=3.2e-06  Score=63.52  Aligned_cols=45  Identities=2%  Similarity=0.048  Sum_probs=38.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~  224 (276)
                      ++++++|.|| +.||++|....|.|.+++++++..  .+.++.|..+.
T Consensus        23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   69 (120)
T 1mek_A           23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE   69 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT
T ss_pred             cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC
Confidence            5789999999 999999999999999999998764  46777777654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=97.89  E-value=4.7e-05  Score=60.22  Aligned_cols=57  Identities=16%  Similarity=0.184  Sum_probs=47.1

Q ss_pred             CCCCceEEEeCccH------HHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRS------LAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~------va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||++.|.++.      +++.||+.        ++    +++||||++|+|+..+....    +.+++.+.|+.|-
T Consensus        92 ~~~~~~~~~d~~~~~~~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~ll  154 (160)
T 3lor_A           92 FGIKFPVAVDMPREGQRIPSTMKKYRLE--------GT----PSIILADRKGRIRQVQFGQV----DDFVLGLLLGSLL  154 (160)
T ss_dssp             TTCCSCEEEECCCTTCSSCHHHHHTTCC--------SS----SEEEEECTTSBEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             cCCCCcEEECCccccchhhhHHHhcccC--------cc----ceEEEECCCCcEEEEecCcC----CHHHHHHHHHHHH
Confidence            45899999999998      99999984        33    69999999999999887544    4778888887764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=97.89  E-value=5e-05  Score=59.64  Aligned_cols=57  Identities=16%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||++.|.++++++.||+.        +    .+++||||++|+|+..+....    +.+++.+.|++|.
T Consensus        81 ~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ll  137 (151)
T 2f9s_A           81 YGVNFPVVLDTDRQVLDAYDVS--------P----LPTTFLINPEGKVVKVVTGTM----TESMIHDYMNLIK  137 (151)
T ss_dssp             HTCCSCEEEETTSHHHHHTTCC--------S----SCEEEEECTTSEEEEEEESCC----CHHHHHHHHHHHS
T ss_pred             cCCCceEEECCchHHHHhcCCC--------C----CCeEEEECCCCcEEEEEeCCC----CHHHHHHHHHHHH
Confidence            3489999999999999999974        3    369999999999998876332    5889999998875

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=97.89  E-value=4.3e-05  Score=60.09  Aligned_cols=62  Identities=16%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTD   92 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~   92 (276)
                      .+++||++.|.++.+++.||+.        +    .+++||||++|+|+..+.....  .+..++.+.|++|....
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~g~~~--~~~~~l~~~l~~l~~~~  145 (154)
T 3kcm_A           84 TGFTLPVLLDADKRVGKLYGTT--------G----VPETFVIDRHGVILKKVVGAME--WDHPEVIAFLNNELSKA  145 (154)
T ss_dssp             HCCCCCEEECTTCHHHHHHTCC--------S----BCEEEEECTTSBEEEEEESCCC--TTSHHHHHHHHTC----
T ss_pred             cCCCeeEEecCchHHHHHhCCC--------C----CCeEEEECCCCcEEEEEcCCCc--cccHHHHHHHHHHHHHh
Confidence            3489999999999999999984        3    3589999999999998874432  35688999998887544

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.88  E-value=1.3e-05  Score=71.47  Aligned_cols=54  Identities=11%  Similarity=0.179  Sum_probs=43.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++++|.|| +.||++|+..+|.|.++++++.+. +.|+.|++|.... .+.++++
T Consensus        34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~~~~-~~l~~~~   87 (298)
T 3ed3_A           34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLNKN-KALCAKY   87 (298)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTSTTT-HHHHHHT
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccCccC-HHHHHhC
Confidence            4789999999 999999999999999999998654 8999999984322 3445555

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=97.86  E-value=3e-06  Score=65.03  Aligned_cols=45  Identities=11%  Similarity=0.097  Sum_probs=39.9

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ..+++++|.|| +.||++|+...+.|.++.+++.  ++.++.|+.|..
T Consensus        34 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~   78 (130)
T 1wmj_A           34 EAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDEL   78 (130)
T ss_dssp             TTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTTS
T ss_pred             hcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccch
Confidence            35899999999 9999999999999999999884  789999988753

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=97.84  E-value=1.9e-05  Score=75.96  Aligned_cols=67  Identities=6%  Similarity=-0.011  Sum_probs=50.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh--CCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ--RTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVD  250 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~--~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D  250 (276)
                      .+++++|+|| ++||++|+..+|.+.++++++++  .++.++.|+.|..+ ..+.++++.-   .+++.-++.+
T Consensus        29 ~~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~-~~~l~~~~~V---~~~PTl~~f~   97 (519)
T 3t58_A           29 SSSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET-NSAVCREFNI---AGFPTVRFFQ   97 (519)
T ss_dssp             CSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG-GHHHHHHTTC---CSBSEEEEEC
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc-cHHHHHHcCC---cccCEEEEEc
Confidence            4689999999 99999999999999999999976  36899999986422 2344555521   1445445545

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.83  E-value=1.1e-05  Score=57.08  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=36.2

Q ss_pred             eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ..|+.|| ++|||+|+...|.|+++.+++.+ ++.++.|+.|..
T Consensus         3 ~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~   44 (85)
T 1nho_A            3 VNIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVD   44 (85)
T ss_dssp             CCEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTC
T ss_pred             EEEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCC
Confidence            3578889 99999999999999999999853 689999998753

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=97.81  E-value=1.2e-05  Score=69.99  Aligned_cols=43  Identities=12%  Similarity=0.086  Sum_probs=38.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      ++++|||.|| ++||++|+...|.|.+++++|.  ++.++.|+.+.
T Consensus       132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~  174 (245)
T 1a0r_P          132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN  174 (245)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH
T ss_pred             CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc
Confidence            5889999999 9999999999999999999984  58899988753

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=97.79  E-value=0.00011  Score=57.44  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||++.|.++++++.||+.        +    .+++||||++|+|+..+...  ...+.+++.+.|+++.
T Consensus        83 ~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~g~--~~~~~~~l~~~i~~~~  141 (152)
T 3gl3_A           83 VPAEFTVAFDPKGQTPRLYGVK--------G----MPTSFLIDRNGKVLLQHVGF--RPADKEALEQQILAAL  141 (152)
T ss_dssp             SCCCSEEEECTTCHHHHHTTCC--------S----SSEEEEECTTSBEEEEEESC--CTTTHHHHHHHHHHHT
T ss_pred             cCCCCceeECCcchhHHHcCCC--------C----CCeEEEECCCCCEEEEEccC--CCcCHHHHHHHHHHHH
Confidence            4589999999999999999984        3    36999999999999988743  2346789999998876

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.78  E-value=0.0001  Score=56.35  Aligned_cols=58  Identities=14%  Similarity=0.063  Sum_probs=46.3

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||++.|.+.++++.||+.        +    .+++||||++|+|+ .+.+ .....+.+++.+.|+++
T Consensus        77 ~~~~~~~~~d~~~~~~~~~~i~--------~----~P~~~lid~~G~i~-~~~~-~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           77 YNLNFTNLNDADGVIWARYNVP--------W----QPAFVFYRADGTST-FVNN-PTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             HTCCSEEEECTTSHHHHHTTCC--------S----SSEEEEECTTSCEE-EECC-SSSCCCHHHHHHHHHHC
T ss_pred             cCCCceEEECCchhHHHhcCCC--------C----CCEEEEECCCCcEE-EEEc-CCCccCHHHHHHHHHHH
Confidence            3489999999999999999974        3    36999999999999 5552 22334789999998875

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=97.76  E-value=2.2e-05  Score=64.74  Aligned_cols=76  Identities=8%  Similarity=-0.066  Sum_probs=47.2

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHH-H--HHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHHHh-cccCCeeEEEeeCC
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELAR-V--LQLIKEFEQRTCKVIALSCDS-VESHHDWIKALVR-DCILGLLINLSVDD  251 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~-l--~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~~~-~~~~~~~~~~l~D~  251 (276)
                      ..+||+|+|.|| ++||++|+...+. |  .++.+.+.+ ++.++.|..|. ++..+.+.+.... .+..++|..++.+.
T Consensus        36 ~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~  113 (173)
T 3ira_A           36 RKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTP  113 (173)
T ss_dssp             HHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECT
T ss_pred             HHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeECC
Confidence            346899999999 9999999997662 2  334444433 57778888774 3333333221110 01226688888787


Q ss_pred             cch
Q psy1172         252 FKE  254 (276)
Q Consensus       252 ~~~  254 (276)
                      ++.
T Consensus       114 dG~  116 (173)
T 3ira_A          114 GKK  116 (173)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            665

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=97.76  E-value=7.3e-05  Score=59.39  Aligned_cols=60  Identities=15%  Similarity=0.212  Sum_probs=49.5

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQL   90 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~   90 (276)
                      .+++||++.|.++++++.||+.        +    .+++||||++|+|+..+...  ...+..++++.+.+++.
T Consensus        93 ~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~G~--~~~~~~~~~~~~~~~~~  152 (158)
T 3hdc_A           93 APVSFNFLSDATGQVQQRYGAN--------R----LPDTFIVDRKGIIRQRVTGG--IEWDAPKVVSYLKSLEG  152 (158)
T ss_dssp             CCCSCEEEECTTSHHHHHTTCC--------S----SSEEEEECTTSBEEEEEESC--CCTTSHHHHHHHHTTC-
T ss_pred             cCCCceEEECchHHHHHHhCCC--------C----cceEEEEcCCCCEEEEEeCC--CccchHHHHHHHHhhcc
Confidence            5689999999999999999985        3    36999999999999998744  34567888888887763

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.75  E-value=6.9e-05  Score=61.15  Aligned_cols=63  Identities=14%  Similarity=0.173  Sum_probs=49.5

Q ss_pred             CCC-CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKL-PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l-~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      +++ .||++.|+++++++.||+.....        ..+++||||++|+|++.+....  ..+.+++++.|++|.
T Consensus       116 ~~~~~~~~~~d~~~~~~~~~~~~~~~~--------~~P~~~lid~~G~i~~~~~g~~--~~~~~~l~~~l~~ll  179 (186)
T 1jfu_A          116 ANLTRLGYFNDQKAKVFQDLKAIGRAL--------GMPTSVLVDPQGCEIATIAGPA--EWASEDALKLIRAAT  179 (186)
T ss_dssp             TTCCTTCCEECTTCHHHHHHHTTTCCS--------SSSEEEEECTTSBEEEEEESCC--CTTSHHHHHHHHHHH
T ss_pred             cCCCCCceEECCcchHHHHhccccccC--------CCCEEEEECCCCCEEEEEecCC--ccCHHHHHHHHHHHh
Confidence            347 59999999999999999863211        2479999999999999987543  345788988888875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.74  E-value=2.5e-05  Score=60.19  Aligned_cols=42  Identities=19%  Similarity=0.335  Sum_probs=37.7

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +++|||.|| +.||++|+.-.|.|.++.++|.  ++.++-|++|.
T Consensus        23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~   64 (118)
T 3evi_A           23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNS   64 (118)
T ss_dssp             TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGG
T ss_pred             CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHH
Confidence            459999999 9999999999999999999883  58999998875

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.72  E-value=6.7e-05  Score=64.82  Aligned_cols=47  Identities=13%  Similarity=-0.039  Sum_probs=40.4

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh---CCcEEEEEeCCC
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ---RTCKVIALSCDS  224 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~---~gv~Vv~VS~D~  224 (276)
                      +++|+.+|++|| +.|||+|+...|.|++++.++..   .++.+..|..+.
T Consensus       135 ~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~  184 (243)
T 2hls_A          135 SLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE  184 (243)
T ss_dssp             HCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT
T ss_pred             HcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc
Confidence            356788899999 99999999999999999999853   578888888764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.72  E-value=4.8e-05  Score=64.08  Aligned_cols=44  Identities=11%  Similarity=-0.019  Sum_probs=37.5

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh---CCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ---RTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~---~gv~Vv~VS~D~  224 (276)
                      ++.++|.|| ++||++|+...|.++++++++.+   .++.++.|+.|.
T Consensus       134 ~~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~  180 (226)
T 1a8l_A          134 QDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE  180 (226)
T ss_dssp             SCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG
T ss_pred             CCcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc
Confidence            344499999 99999999999999999999974   368899998774

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.71  E-value=7e-05  Score=60.17  Aligned_cols=70  Identities=10%  Similarity=0.202  Sum_probs=49.8

Q ss_pred             CCCCc---eEEEeCccHHHHHhCC-----CCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPY---PIIADQDRSLAVQLGM-----LDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~f---pllsD~~~~va~~yG~-----~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++|   |+++|+++++++.|++     .........++. ...++||||++|+|++.+.....  .+.+++++.|++|
T Consensus        94 ~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~lid~~G~i~~~~~g~~~--~~~~~l~~~l~~l  170 (174)
T 1xzo_A           94 YPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVI-HQSSFYLVGPDGKVLKDYNGVEN--TPYDDIISDVKSA  170 (174)
T ss_dssp             SCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCC-SCCEEEEECTTSEEEEEEESSSS--CCHHHHHHHHHHH
T ss_pred             cCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeee-eeeEEEEECCCCeEEEEEcCCCC--CCHHHHHHHHHHH
Confidence            66899   9999999999988864     111100001221 35689999999999999875432  4689999999887


Q ss_pred             c
Q psy1172          89 Q   89 (276)
Q Consensus        89 q   89 (276)
                      .
T Consensus       171 l  171 (174)
T 1xzo_A          171 S  171 (174)
T ss_dssp             T
T ss_pred             H
Confidence            5

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=97.71  E-value=5.1e-05  Score=61.89  Aligned_cols=55  Identities=24%  Similarity=0.337  Sum_probs=42.4

Q ss_pred             CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172          17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS   87 (276)
Q Consensus        17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~   87 (276)
                      .+++|| +++|.++++++.||+.        +    .+++||||++|+|++.+....+    .+++.+.|++
T Consensus       109 ~~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~g~~~----~~~l~~~l~~  164 (176)
T 3kh7_A          109 LHNPYLLSISDADGTLGLDLGVY--------G----APETYLIDKQGIIRHKIVGVVD----QKVWREQLAP  164 (176)
T ss_dssp             TTCCCSEEEEETTCHHHHHHTCC--------S----SCEEEEECTTCBEEEEEESCCC----HHHHHHHTHH
T ss_pred             cCCCCceEEECCcchHHHHcCCC--------C----CCeEEEECCCCeEEEEEcCCCC----HHHHHHHHHH
Confidence            458898 5999999999999985        3    3699999999999998875544    4454444443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=7.9e-05  Score=58.57  Aligned_cols=53  Identities=15%  Similarity=0.255  Sum_probs=43.9

Q ss_pred             CCCCceEEEeC---ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQ---DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~---~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||++.|.   ++++++.||+.        +    .+++||||++|+|+..+.       +.+++.+.|++|
T Consensus        91 ~~~~~~~~~d~~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~-------~~~~l~~~l~~l  146 (150)
T 3fw2_A           91 DTLDWEQVCDFGGLNSEVAKQYSIY--------K----IPANILLSSDGKILAKNL-------RGEELKKKIENI  146 (150)
T ss_dssp             TTCCSEEECCSCGGGCHHHHHTTCC--------S----SSEEEEECTTSBEEEESC-------CHHHHHHHHHHH
T ss_pred             hCCCceEEEcCcccchHHHHHcCCC--------c----cCeEEEECCCCEEEEccC-------CHHHHHHHHHHH
Confidence            45899999998   77999999985        3    369999999999998874       577777777765

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=97.70  E-value=0.00013  Score=56.30  Aligned_cols=53  Identities=17%  Similarity=0.360  Sum_probs=43.4

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL   85 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l   85 (276)
                      ++++||++.|.++++++.||+.            ..+++||||++|+|+..+....    +.+++.+.|
T Consensus        92 ~~~~~~~~~d~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l  144 (145)
T 3erw_A           92 NKLTFPIVLDSKGELMKEYHII------------TIPTSFLLNEKGEIEKTKIGPM----TAEQLKEWT  144 (145)
T ss_dssp             TTCCSCEEECSSSHHHHHTTCC------------EESEEEEECTTCCEEEEEESCC----CHHHHHHHH
T ss_pred             cCCceeEEEcCchhHHHhcCcC------------ccCeEEEEcCCCcEEEEEcCCc----CHHHHHHhh
Confidence            4589999999999999999974            2469999999999999887443    467776665

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=97.69  E-value=0.00016  Score=56.00  Aligned_cols=57  Identities=16%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||++.|.++++++.||+.        ++    +++||||++|+|+..+...    .+.+++.+.|+.+-
T Consensus        88 ~~~~~~~~~d~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~~l  144 (148)
T 2b5x_A           88 HDITQPIFVDSDHALTDAFENE--------YV----PAYYVFDKTGQLRHFQAGG----SGMKMLEKRVNRVL  144 (148)
T ss_dssp             TTCCSCEEECSSCHHHHHTCCC--------CS----SEEEEECTTCBEEEEEESC----STTHHHHHHHHHHH
T ss_pred             cCCCcceEECCchhHHHHhCCC--------CC----CEEEEECCCCcEEEEecCC----CCHHHHHHHHHHHH
Confidence            4589999999999999999984        33    5999999999999887643    34678888887764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=97.67  E-value=2.3e-05  Score=60.29  Aligned_cols=45  Identities=11%  Similarity=0.080  Sum_probs=35.0

Q ss_pred             CCCeEEEEEEcCCCCc--------------ccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTP--------------VCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp--------------~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .||+++|.|| ++||+              +|+...|.|+++++++.+ .+.++.|+.|..
T Consensus        20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~   78 (123)
T 1oaz_A           20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN   78 (123)
T ss_dssp             CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSC
T ss_pred             CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCC
Confidence            5899999999 99999              999999999999998865 489999998854

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=97.67  E-value=3.5e-05  Score=72.71  Aligned_cols=46  Identities=4%  Similarity=-0.000  Sum_probs=40.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~D~~  225 (276)
                      .+++++|+|| ++||++|+..+|.|.++++++++. ++.++.|..+..
T Consensus       369 ~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~  415 (481)
T 3f8u_A          369 ENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN  415 (481)
T ss_dssp             TTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS
T ss_pred             CCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch
Confidence            4899999999 999999999999999999999765 678888877643

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=97.67  E-value=9.6e-05  Score=51.18  Aligned_cols=37  Identities=8%  Similarity=-0.022  Sum_probs=30.8

Q ss_pred             EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172         183 GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS  221 (276)
Q Consensus       183 vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS  221 (276)
                      ..|.|| ++||++|+...|.|+++.+++. ..+.++.|+
T Consensus         2 ~~v~f~-a~wC~~C~~~~~~l~~~~~~~~-~~~~~~~v~   38 (77)
T 1ilo_A            2 MKIQIY-GTGCANCQMLEKNAREAVKELG-IDAEFEKIK   38 (77)
T ss_dssp             EEEEEE-CSSSSTTHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred             cEEEEE-cCCChhHHHHHHHHHHHHHHcC-CceEEEEec
Confidence            358899 8999999999999999988874 357777776

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=97.65  E-value=0.00011  Score=59.89  Aligned_cols=60  Identities=23%  Similarity=0.287  Sum_probs=48.0

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||++.|+++.+++.||.+.-.         ..+++||||++|+|+..+....    +.+++.+.|+.|.
T Consensus       121 ~~~~~~~~~d~~~~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ll  180 (183)
T 3lwa_A          121 NGLDYPSIYDPPFMTAASLGGVPAS---------VIPTTIVLDKQHRPAAVFLREV----TSKDVLDVALPLV  180 (183)
T ss_dssp             TTCCSCEEECTTCGGGGGTTTCCTT---------CCSEEEEECTTSCEEEEECSCC----CHHHHHHHHHHHH
T ss_pred             cCCCccEEECCcchHHHHhccCCCC---------CCCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence            4589999999999999999854211         2468999999999999887443    5888888888763

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=97.63  E-value=0.00011  Score=57.74  Aligned_cols=62  Identities=13%  Similarity=0.064  Sum_probs=46.1

Q ss_pred             CCCCceEEEeCc---cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccc
Q psy1172          17 GKLPYPIIADQD---RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTD   92 (276)
Q Consensus        17 ~~l~fpllsD~~---~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~   92 (276)
                      .+++||++.|.+   .++++.||...      .+    .+++||||++|+|+..+....    +.+++.+.|+.|+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~v------~~----~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~l~~~~  142 (151)
T 3raz_A           78 TPVSYPIWRYTGANSRNFMKTYGNTV------GV----LPFTVVEAPKCGYRQTITGEV----NEKSLTDAVKLAHSKC  142 (151)
T ss_dssp             SCCSSCEEEECCSCHHHHHHTTTCCS------CC----SSEEEEEETTTTEEEECCSCC----CHHHHHHHHHHHHTC-
T ss_pred             cCCCCceEecCccchHHHHHHhCCcc------CC----CCEEEEECCCCcEEEEECCCC----CHHHHHHHHHHHHHHh
Confidence            459999999864   46888888310      13    369999999999988876443    5788999998887443

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=97.62  E-value=0.00014  Score=56.37  Aligned_cols=54  Identities=7%  Similarity=0.205  Sum_probs=43.5

Q ss_pred             CCCCceEEEeCccHHHH--HhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAV--QLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~--~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||++.|.++.++.  .||+.        +    .+++||||++|+|++.       +.+.+++.+.|+.++
T Consensus        85 ~~~~~~~~~d~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~-------~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A           85 MPQGWIVGWNKAGDIRTRQLYDIR--------A----TPTIYLLDGRKRVILK-------DTSMEQLIDYLATQA  140 (142)
T ss_dssp             SCTTCEEEECTTCHHHHTTCSCCC--------S----SSEEEEECTTCBEEEC-------SCCHHHHHHHHHC--
T ss_pred             cCCCcceeeCCccchhhHHHcCCC--------C----CCeEEEECCCCCEEec-------CCCHHHHHHHHHHHc
Confidence            67999999999999987  88874        3    3699999999999772       356889988888765

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.61  E-value=0.00018  Score=56.31  Aligned_cols=57  Identities=14%  Similarity=0.328  Sum_probs=47.5

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||++.|.+.++++.||+.        ++    +++||||++|+|+..+...    .+.+++++.|+++-
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~i~--------~~----P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~ll  140 (153)
T 2l5o_A           84 YGLPFTVMYDADKAVGQAFGTQ--------VY----PTSVLIGKKGEILKTYVGE----PDFGKLYQEIDTAW  140 (153)
T ss_dssp             TTCCSEEEECSSCHHHHHHTCC--------SS----SEEEEECSSSCCCEEEESS----CCHHHHHHHHHHHH
T ss_pred             cCCCceEEcCchHHHHHHcCCC--------cc----CeEEEECCCCcEEEEEcCC----CCHHHHHHHHHHHH
Confidence            4588999999999999999974        33    5999999999999887642    46889998888764

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=97.60  E-value=6.3e-07  Score=67.86  Aligned_cols=37  Identities=14%  Similarity=0.066  Sum_probs=31.4

Q ss_pred             EEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHH
Q psy1172         172 VILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEF  210 (276)
Q Consensus       172 v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~  210 (276)
                      ++|+ .+.++++||.|| ++|||+|+...|.|.++++++
T Consensus         5 ~~la-~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~   41 (106)
T 3kp8_A            5 VGLA-AHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQV   41 (106)
T ss_dssp             HHHH-HHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGS
T ss_pred             hHHH-HhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhC
Confidence            4555 567888999999 999999999999999887665

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=97.59  E-value=0.00019  Score=65.55  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=54.9

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV   96 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~   96 (276)
                      .+++||++.|.+.++++.||+.            ..+++||||++|+|+..+....    +.+++.+.|++|......+.
T Consensus       142 ~~l~fpv~~D~~~~l~~~ygV~------------~~Pt~~lID~~G~Iv~~~~G~~----~~~~l~~~I~~lL~e~~~~~  205 (352)
T 2hyx_A          142 LGISYPIALDNNYATWTNYRNR------------YWPAEYLIDATGTVRHIKFGEG----DYNVTETLVRQLLNDAKPGV  205 (352)
T ss_dssp             HTCCSCEEECTTSHHHHHTTCC------------EESEEEEECTTSBEEEEEESBC----CHHHHHHHHHHHHHHHSTTC
T ss_pred             cCCCccEEeCCcHHHHHHcCCC------------ccCEEEEEeCCCeEEEEEcCCC----CHHHHHHHHHHHHhhccCCC
Confidence            4589999999999999999984            2469999999999999987543    47888888888754444445


Q ss_pred             CcCCCCC
Q psy1172          97 ATPVDWK  103 (276)
Q Consensus        97 ~~p~~w~  103 (276)
                      ..|+...
T Consensus       206 ~lpap~~  212 (352)
T 2hyx_A          206 KLPQPSS  212 (352)
T ss_dssp             CCCSCGG
T ss_pred             CCCCCcc
Confidence            5666543

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.58  E-value=2.5e-05  Score=62.14  Aligned_cols=53  Identities=21%  Similarity=0.199  Sum_probs=42.4

Q ss_pred             CCCeEEEEEEcCCC--CcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDF--TPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~--cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++|||.|| +.|  |++|+...|-|.++.++|.++.+.|+-|++|..   .+...++
T Consensus        33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~---~~lA~~y   87 (140)
T 2qgv_A           33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQS---EAIGDRF   87 (140)
T ss_dssp             TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHH---HHHHHHH
T ss_pred             CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCC---HHHHHHc
Confidence            4578888888 999  999999999999999999654488988887743   3455666

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=97.58  E-value=1.6e-05  Score=64.05  Aligned_cols=74  Identities=15%  Similarity=-0.061  Sum_probs=44.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHH--HHHHhCCcEEEEEeCC--ChHHHHHHHHHHHhcccCCeeEEEeeCCcch
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLI--KEFEQRTCKVIALSCD--SVESHHDWIKALVRDCILGLLINLSVDDFKE  254 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~--~~~~~~gv~Vv~VS~D--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~  254 (276)
                      .||+|+|.|| ++||++|+...|.+.+.-  .++.+  ..++.|.+|  +....    ..+   .+.++|.-++.+.++.
T Consensus        43 ~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e~~~~~----~~~---~v~~~PT~~f~~~~G~  112 (151)
T 3ph9_A           43 SKKPLMVIHH-LEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHETTDKN----LSP---DGQYVPRIMFVDPSLT  112 (151)
T ss_dssp             HTCCEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSCCSCGG----GCT---TCCCSSEEEEECTTSC
T ss_pred             cCCcEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCCchhhH----hhc---CCCCCCEEEEECCCCC
Confidence            5899999999 999999999999887642  22322  235555554  22211    112   1235676677676654


Q ss_pred             hhhhhhhccc
Q psy1172         255 VEGRSRRFQE  264 (276)
Q Consensus       255 ~~~~a~~ygv  264 (276)
                      .  +.+..|.
T Consensus       113 ~--v~~~~G~  120 (151)
T 3ph9_A          113 V--RADIAGR  120 (151)
T ss_dssp             B--CTTCCCS
T ss_pred             E--EEEEeCC
Confidence            2  3444454

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.57  E-value=6.4e-05  Score=59.57  Aligned_cols=51  Identities=14%  Similarity=0.183  Sum_probs=42.0

Q ss_pred             CCeEEEEEEcCCCC--cccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFT--PVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~c--p~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++||.|| ++||  ++|+...|-|.++.++|.+ .+.|+-|++|...   +...++
T Consensus        33 ~~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe~~---~la~~y   85 (137)
T 2qsi_A           33 GKIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEAER---GLMARF   85 (137)
T ss_dssp             SSEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGGHH---HHHHHH
T ss_pred             CCcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCCCH---HHHHHc
Confidence            349999999 9999  9999999999999999854 4899999887543   445666

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=97.56  E-value=0.00031  Score=55.60  Aligned_cols=57  Identities=14%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             CCCC-ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLP-YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~-fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++ ||++.|.+.++++.||+.        ++    +++||||++|+|+..+...    .+.+++.+.|+.+.
T Consensus        98 ~~~~~~~~~~d~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~~~~g~----~~~~~l~~~i~~~~  155 (164)
T 2h30_A           98 LNYPKLPVVTDNGGTIAQNLNIS--------VY----PSWALIGKDGDVQRIVKGS----INEAQALALIRNPN  155 (164)
T ss_dssp             SCCTTSCEEECTTCHHHHHTTCC--------SS----SEEEEECTTSCEEEEEESC----CCHHHHHHHHHCTT
T ss_pred             CCCCcceEEEcCchHHHHHcCCC--------cc----ceEEEECCCCcEEEEEcCC----CCHHHHHHHHHHHH
Confidence            4677 999999999999999974        33    5999999999999987643    35888888888764

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=97.56  E-value=4.6e-05  Score=72.19  Aligned_cols=53  Identities=15%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-C------cEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-T------CKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-g------v~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++++||+|| ++||++|+..+|.+.++++++.+. +      +.++.|+.|...   +..+++
T Consensus        41 ~~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~---~la~~y  100 (470)
T 3qcp_A           41 PLCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV---DLCRKY  100 (470)
T ss_dssp             GGSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH---HHHHHT
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH---HHHHHc
Confidence            3479999999 999999999999999999998643 3      899999988542   344555

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=97.55  E-value=3.8e-05  Score=65.48  Aligned_cols=42  Identities=12%  Similarity=0.017  Sum_probs=37.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      +|++|||.|| +.||++|+...|.|.+++++|  .++.++.|+++
T Consensus       119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~--~~v~f~~vd~~  160 (217)
T 2trc_P          119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEY--PMVKFCKIRAS  160 (217)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTC--TTSEEEEEEHH
T ss_pred             CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHC--CCeEEEEEECC
Confidence            4689999999 999999999999999999988  36899999876

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=97.55  E-value=3e-05  Score=65.08  Aligned_cols=50  Identities=10%  Similarity=0.120  Sum_probs=39.3

Q ss_pred             CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC
Q psy1172          18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP   71 (276)
Q Consensus        18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~   71 (276)
                      ...+++|+|++++++++|||.....   .|.....|.++||| ||+|++++.-+
T Consensus       132 ~~~i~~laD~~~eftkalGl~~~~~---~gg~RS~Rya~IVd-DGvV~~~~vE~  181 (199)
T 4h86_A          132 TTHIKFASDPGCAFTKSIGFELAVG---DGVYWSGRWAMVVE-NGIVTYAAKET  181 (199)
T ss_dssp             CSSEEEEECGGGHHHHHTTCEEEEE---TTEEEECSEEEEEE-TTEEEEEEECS
T ss_pred             cccccccCCcchHHHHhcCceeecC---CCcceeeEEEEEEE-CCEEEEEEEeC
Confidence            4679999999999999999864322   12223679999999 99999999843

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=97.54  E-value=0.0001  Score=57.97  Aligned_cols=57  Identities=21%  Similarity=0.233  Sum_probs=48.0

Q ss_pred             CCCCceEEEe---CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIAD---QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD---~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||++.|   .+.++++.||+.        +    .+++||||++|+|+..+....    +.+++.+.|+.+.
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~~  143 (154)
T 3ia1_A           84 YPRFIPLLASDRDRPHEVAARFKVL--------G----QPWTFVVDREGKVVALFAGRA----GREALLDALLLAG  143 (154)
T ss_dssp             CTTEEECBCCSSCCHHHHHTTSSBC--------S----SCEEEEECTTSEEEEEEESBC----CHHHHHHHHHHTT
T ss_pred             cCCCcccccccccchHHHHHHhCCC--------c----ccEEEEECCCCCEEEEEcCCC----CHHHHHHHHHhcc
Confidence            6689999999   888999999974        3    369999999999999887433    4889999998876

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=97.54  E-value=0.0004  Score=52.71  Aligned_cols=55  Identities=22%  Similarity=0.276  Sum_probs=44.5

Q ss_pred             CCC-CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKL-PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l-~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .++ +||++.|.+.++++.||+.        ++    +++||||++|+|+ .+...    .+.+++.+.|+++
T Consensus        78 ~~~~~~~~~~d~~~~~~~~~~i~--------~~----P~~~~id~~g~i~-~~~g~----~~~~~l~~~l~~~  133 (136)
T 1zzo_A           78 YPVKTFTQLADTDGSVWANFGVT--------QQ----PAYAFVDPHGNVD-VVRGR----MSQDELTRRVTAL  133 (136)
T ss_dssp             TTCTTSEEEECTTCHHHHHTTCC--------SS----SEEEEECTTCCEE-EEESC----CCHHHHHHHHHHH
T ss_pred             cCCCceEEEEcCCcHHHHHcCCC--------CC----ceEEEECCCCCEE-EEecC----CCHHHHHHHHHHH
Confidence            347 9999999999999999974        33    5999999999998 66533    2478888888765

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=97.54  E-value=0.00014  Score=57.70  Aligned_cols=69  Identities=12%  Similarity=0.020  Sum_probs=47.3

Q ss_pred             CCCCceEEE---eCccHHHHHhCCCCCC-CCCCCC-C-CcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIA---DQDRSLAVQLGMLDPV-EKDSKG-M-PLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fplls---D~~~~va~~yG~~~~~-~~~~~g-~-~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||++.   |..+++++.||+.... ..+..+ . ....+++||||++|+|+..+....    +.+++++.|++|.
T Consensus        86 ~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ll  160 (164)
T 2ggt_A           86 FSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK----RKGEIAASIATHM  160 (164)
T ss_dssp             TCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTC----CHHHHHHHHHHHH
T ss_pred             cCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCC----CHHHHHHHHHHHH
Confidence            558999994   6677899999985311 000000 0 012358999999999999886443    5788999888775

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=97.52  E-value=0.0001  Score=66.84  Aligned_cols=52  Identities=10%  Similarity=0.079  Sum_probs=42.6

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHH-------HHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELAR-------VLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~-------l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++++|.|| +.||+ |+..+|.       ++++++++++.++.++.|+.+...   +.++++
T Consensus        27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~---~l~~~~   85 (350)
T 1sji_A           27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEA---KLAKKL   85 (350)
T ss_dssp             TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTH---HHHHHH
T ss_pred             hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCH---HHHHhc
Confidence            4689999999 99999 9888888       888888887778999999987543   334455

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.52  E-value=0.0001  Score=69.93  Aligned_cols=53  Identities=6%  Similarity=0.100  Sum_probs=45.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++++|.|| +.||++|+...|.+.++++++++.++.++.|+.+...   ..++++
T Consensus        30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~---~l~~~~   82 (504)
T 2b5e_A           30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ---DLCMEH   82 (504)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH---HHHHHT
T ss_pred             cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCH---HHHHhc
Confidence            4789999999 9999999999999999999998778999999987543   344555

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.51  E-value=0.00013  Score=66.98  Aligned_cols=53  Identities=9%  Similarity=0.052  Sum_probs=42.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-----CCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-----RTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-----~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++++|.|| +.||++|+...|.+.++++++++     .++.++.|+.+...   ..++++
T Consensus        21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~---~l~~~~   78 (382)
T 2r2j_A           21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS---DIAQRY   78 (382)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH---HHHHHT
T ss_pred             cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH---HHHHhc
Confidence            4789999999 99999999999999999999963     34888888887542   344555

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=97.51  E-value=0.00032  Score=55.99  Aligned_cols=71  Identities=7%  Similarity=0.011  Sum_probs=48.9

Q ss_pred             CCCCceEEEeCc---cHHHHHhCCCCCC-CCCCC-CC-CcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcc
Q psy1172          17 GKLPYPIIADQD---RSLAVQLGMLDPV-EKDSK-GM-PLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQL   90 (276)
Q Consensus        17 ~~l~fpllsD~~---~~va~~yG~~~~~-~~~~~-g~-~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~   90 (276)
                      .+++|+++.|..   +++++.||+.... ..... +. ....+++||||++|+|+..+....    +.+++++.|++|..
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~ll~  164 (171)
T 2rli_A           89 FHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR----SAEQISDSVRRHMA  164 (171)
T ss_dssp             TCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC----CHHHHHHHHHHHHH
T ss_pred             cCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC----CHHHHHHHHHHHHH
Confidence            558999999753   5899999986321 00000 00 013469999999999999987543    57889988888754


Q ss_pred             c
Q psy1172          91 T   91 (276)
Q Consensus        91 ~   91 (276)
                      .
T Consensus       165 ~  165 (171)
T 2rli_A          165 A  165 (171)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=97.43  E-value=0.00026  Score=55.66  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=41.1

Q ss_pred             CCCceEEEeC---ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          18 KLPYPIIADQ---DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        18 ~l~fpllsD~---~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      +++||+++|+   +.++++.||+.        +    .+++||||++|+|+..+.    .   .+++.+.|++|.
T Consensus        85 ~~~~~~~~d~~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~----~---~~~l~~~l~~l~  140 (152)
T 2lrn_A           85 KSYWNQVLLQKDDVKDVLESYCIV--------G----FPHIILVDPEGKIVAKEL----R---GDDLYNTVEKFV  140 (152)
T ss_dssp             TCCSEEEEECHHHHHHHHHHTTCC--------S----SCEEEEECTTSEEEEECC----C---TTHHHHHHHHHH
T ss_pred             CCCCeEEecccchhHHHHHHhCCC--------c----CCeEEEECCCCeEEEeeC----C---HHHHHHHHHHHH
Confidence            4899999999   78999999984        3    369999999999998863    1   245556665554

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=97.42  E-value=0.00026  Score=54.83  Aligned_cols=55  Identities=13%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             CCC-ceEEEeCccH--HHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLP-YPIIADQDRS--LAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~-fpllsD~~~~--va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      +++ ||++.|+++.  +++.||+.        +    .+++||||++|+|+..+...    .+++++++.+..+
T Consensus        87 ~~~~~~~~~d~~~~~~~~~~~~i~--------~----~P~~~lid~~G~i~~~~~g~----~~~~~~l~~l~~~  144 (148)
T 3hcz_A           87 KIGGWLNVRDSKNHTDFKITYDIY--------A----TPVLYVLDKNKVIIAKRIGY----ENLDDFLVQYEKS  144 (148)
T ss_dssp             TCTTSEEEECTTCCCCHHHHHCCC--------S----SCEEEEECTTCBEEEESCCG----GGHHHHHHHHHHH
T ss_pred             CCCCceEEeccccchhHHHhcCcC--------C----CCEEEEECCCCcEEEecCCH----HHHHHHHHHHHHH
Confidence            377 9999999998  99999984        3    36999999999999876532    4577777766543

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=97.41  E-value=0.00036  Score=53.99  Aligned_cols=54  Identities=17%  Similarity=0.246  Sum_probs=44.7

Q ss_pred             CCCCceEEEeC---ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQ---DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~---~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||++.|.   ++.+++.||+.        ++    +++||||++|+|+....       +.+++.+.|+.+-
T Consensus        89 ~~~~~~~~~d~~~~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~~~~-------~~~~l~~~l~~ll  145 (148)
T 3fkf_A           89 DTLSWDQVCDFTGLSSETAKQYAIL--------TL----PTNILLSPTGKILARDI-------QGEALTGKLKELL  145 (148)
T ss_dssp             TTCCSEEECCSCGGGCHHHHHTTCC--------SS----SEEEEECTTSBEEEESC-------CHHHHHHHHHHHC
T ss_pred             cCCCceEEEccCCcchHHHHhcCCC--------Cc----CEEEEECCCCeEEEecC-------CHHHHHHHHHHHH
Confidence            45899999998   78999999985        33    69999999999988764       6788888887763

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.40  E-value=0.00059  Score=53.41  Aligned_cols=56  Identities=16%  Similarity=0.302  Sum_probs=44.1

Q ss_pred             CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++|| ++.|.+.++++.||+.        ++    +++||||++|+|+..+....    +.+++.+.|+.+
T Consensus        94 ~~~~~~~~~~d~~~~~~~~~~v~--------~~----P~~~~id~~G~i~~~~~g~~----~~~~l~~~l~~~  150 (156)
T 1kng_A           94 YGNPFGRVGVDANGRASIEWGVY--------GV----PETFVVGREGTIVYKLVGPI----TPDNLRSVLLPQ  150 (156)
T ss_dssp             HCCCCSEEEEETTSHHHHHTTCC--------SS----CEEEEECTTSBEEEEEESCC----CHHHHHHTHHHH
T ss_pred             cCCCCceeeeCchhHHHHhcCcC--------cc----CeEEEEcCCCCEEEEEeCCC----CHHHHHHHHHHH
Confidence            348999 9999999999999974        33    58999999999998876433    466776666654

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.39  E-value=0.00024  Score=54.30  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=40.7

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH-HHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH-HDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~-~~~~~~~  235 (276)
                      +++++|+|+ ++|||+|+.-.|.|+++.++   .++.++-|.+|....+ .+.++++
T Consensus        24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r~~Sn~IA~~~   76 (112)
T 3iv4_A           24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQERDLSDYIAKKT   76 (112)
T ss_dssp             CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGHHHHHHHHHHH
T ss_pred             CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCchhhHHHHHHh
Confidence            789999999 99999999999999998874   4688899888754322 3344555

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=97.33  E-value=0.0002  Score=67.38  Aligned_cols=51  Identities=4%  Similarity=-0.046  Sum_probs=42.7

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +++++|.|| +.||++|+...|.+.++++++++. +.++.|+.+...   ..++++
T Consensus        21 ~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~~~---~l~~~~   71 (481)
T 3f8u_A           21 AGLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTANT---NTCNKY   71 (481)
T ss_dssp             SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTTCH---HHHHHT
T ss_pred             CCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCCCH---HHHHhc
Confidence            489999999 999999999999999999999765 888899887643   344555

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=97.32  E-value=0.00067  Score=54.08  Aligned_cols=56  Identities=25%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+++|| ++.|.++++++.||+.        +    .+++||||++|+|+..+....    +.+++.+.|+.+
T Consensus       102 ~~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~  158 (168)
T 2b1k_A          102 LGNPYALSLFDGDGMLGLDLGVY--------G----APETFLIDGNGIIRYRHAGDL----NPRVWEEEIKPL  158 (168)
T ss_dssp             HCCCCSEEEEETTCHHHHHHTCC--------S----SSEEEEECTTSBEEEEEESCC----CHHHHHHTTHHH
T ss_pred             cCCCCceeeECcchHHHHHcCcc--------c----cCEEEEECCCCeEEEEEeCCC----CHHHHHHHHHHH
Confidence            348898 6899999999999985        3    369999999999998887433    356665555543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.32  E-value=0.00018  Score=68.29  Aligned_cols=44  Identities=9%  Similarity=0.127  Sum_probs=37.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh--CCcEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ--RTCKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~--~gv~Vv~VS~D  223 (276)
                      .++++||.|| ++||++|+..+|.+.++++++..  .++.++.|..+
T Consensus       375 ~~k~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~  420 (504)
T 2b5e_A          375 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT  420 (504)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG
T ss_pred             CCCCEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCC
Confidence            4789999999 99999999999999999999973  35666676654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=97.30  E-value=0.00025  Score=70.98  Aligned_cols=46  Identities=13%  Similarity=0.018  Sum_probs=41.2

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +.|++++|.|| ++||++|+..+|.|.+++++|++ ++.++.|+.+..
T Consensus       453 ~~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~  498 (780)
T 3apo_A          453 SDKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIH  498 (780)
T ss_dssp             TCCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC
T ss_pred             cCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCC
Confidence            47899999999 99999999999999999999964 589999998754

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=97.30  E-value=0.00013  Score=58.35  Aligned_cols=68  Identities=13%  Similarity=0.178  Sum_probs=48.9

Q ss_pred             CCCCceEEEeCc---cHHHHHhCCCCCCCC----CCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQD---RSLAVQLGMLDPVEK----DSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~~---~~va~~yG~~~~~~~----~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||+++|++   +++++.||+......    ...++. ..+++|||| +|+|++.+....  ..+.+++++.|++|
T Consensus        97 ~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~-~~P~~~lid-~G~i~~~~~g~~--~~~~~~l~~~l~~l  171 (172)
T 2k6v_A           97 FHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVD-HTATTFVVK-EGRLVLLYSPDK--AEATDRVVADLQAL  171 (172)
T ss_dssp             HCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEE-ECCCEEEEE-TTEEEEEECHHH--HTCHHHHHHHHHHC
T ss_pred             hCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEe-cCCEEEEEE-CCEEEEEECCCC--CCCHHHHHHHHHHh
Confidence            348999999988   799999998643210    000111 357999999 999999887443  23688999988875

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=96.40  E-value=3.5e-05  Score=61.20  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             CCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        16 ~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ..+++||++.|+++++++.||+...      |+    +++||||++|+|+..+..     .+.+++.+.|++|+
T Consensus        89 ~~~~~~~~~~d~~~~~~~~~~~~~~------~~----P~~~lid~~G~i~~~~~g-----~~~~~l~~~l~~l~  147 (159)
T 2ls5_A           89 STGVTYPLGLDPGADIFAKYALRDA------GI----TRNVLIDREGKIVKLTRL-----YNEEEFASLVQQIN  147 (159)
Confidence            3678999999999999999996311      33    489999999999987752     23444555555554

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=97.29  E-value=0.00038  Score=55.05  Aligned_cols=53  Identities=17%  Similarity=0.286  Sum_probs=42.0

Q ss_pred             CCCceEEEeCccH---HHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172          18 KLPYPIIADQDRS---LAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD   86 (276)
Q Consensus        18 ~l~fpllsD~~~~---va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~   86 (276)
                      +++||++.|.++.   +++.||+.        +    .+++||||++|+|+..+..    ..+.++.+..+.
T Consensus        89 ~~~~~~~~d~~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~g----~~~~e~~~~~~~  144 (152)
T 2lrt_A           89 NLPWVCVRDANGAYSSYISLYNVT--------N----LPSVFLVNRNNELSARGEN----IKDLDEAIKKLL  144 (152)
T ss_dssp             TCSSEEEECSSGGGCHHHHHHTCC--------S----CSEEEEEETTTEEEEETTT----CSCHHHHHHHHH
T ss_pred             CCCceEEECCCCcchHHHHHcCcc--------c----CceEEEECCCCeEEEecCC----HHHHHHHHHHHH
Confidence            4899999999987   99999985        2    3699999999999887652    345777666553

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.29  E-value=0.00032  Score=59.17  Aligned_cols=42  Identities=5%  Similarity=-0.062  Sum_probs=35.7

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      ++.+++.|| +.||++|+...|.+++++.++  .++.++.|+.+.
T Consensus       136 ~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~--~~v~~~~vd~~~  177 (229)
T 2ywm_A          136 IPIEIWVFV-TTSCGYCPSAAVMAWDFALAN--DYITSKVIDASE  177 (229)
T ss_dssp             SCEEEEEEE-CTTCTTHHHHHHHHHHHHHHC--TTEEEEEEEGGG
T ss_pred             CCeEEEEEE-CCCCcchHHHHHHHHHHHHHC--CCeEEEEEECCC
Confidence            445588899 999999999999999999887  478888888764

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.28  E-value=0.00043  Score=58.51  Aligned_cols=45  Identities=9%  Similarity=-0.040  Sum_probs=35.3

Q ss_pred             EEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172         172 VILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       172 v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~  222 (276)
                      +.+. ...++++|+.|| +.|||+|++..+.|.++.+    .+++|+.+..
T Consensus        79 ~~~g-~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~~  123 (216)
T 1eej_A           79 IVYK-APQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLAF  123 (216)
T ss_dssp             EEEC-CTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEEC
T ss_pred             eeec-CCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEEC
Confidence            3444 446889999999 9999999999999887653    4788877654

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.27  E-value=0.00052  Score=56.71  Aligned_cols=53  Identities=13%  Similarity=0.241  Sum_probs=41.2

Q ss_pred             CCCeEEEEEEcC-------CCCcccHHHHHHHHHHHHHHHh----CCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPS-------DFTPVCTTELARVLQLIKEFEQ----RTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa-------~~cp~C~~el~~l~~~~~~~~~----~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++.+|||.|| +       .||++|+.-.|.|+++.++|..    ..+.+.-|.+|...   +..+++
T Consensus        36 ~~~~vvV~F~-A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~---~la~~~   99 (178)
T 3ga4_A           36 PGYFNILYIT-MRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP---QLVKDL   99 (178)
T ss_dssp             TTCEEEEEEE-CCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH---HHHHHT
T ss_pred             CCCcEEEEEe-CCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH---HHHHHc
Confidence            3568999999 6       5999999999999999999962    34788888888533   334555

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=97.27  E-value=0.00047  Score=54.86  Aligned_cols=54  Identities=19%  Similarity=0.298  Sum_probs=42.8

Q ss_pred             CC-CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          18 KL-PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        18 ~l-~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++ +||++.| ++++++.||+.        ++    +++||||++|+|+.  ....   .+.+++.+.|++|.
T Consensus       109 ~~~~~~~~~d-~~~~~~~~~v~--------~~----P~~~lid~~G~i~~--~g~~---~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          109 GDPSWIMVMD-DGSLVEKFNVR--------SI----DYIVIMDKSSNVLY--AGTT---PSLGELESVIKSVQ  163 (165)
T ss_dssp             SCTTSEEEEC-CSHHHHHTTCC--------SS----SEEEEEETTCCEEE--EEES---CCHHHHHHHHHHC-
T ss_pred             CCCCeeEEeC-hHHHHHHhCCC--------Cc----eEEEEEcCCCcEEE--eCCC---CCHHHHHHHHHHHh
Confidence            47 9999999 99999999975        33    59999999999999  2222   15788888888764

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.26  E-value=0.00036  Score=56.49  Aligned_cols=59  Identities=10%  Similarity=0.049  Sum_probs=42.1

Q ss_pred             CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhccc
Q psy1172          27 QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLT   91 (276)
Q Consensus        27 ~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~   91 (276)
                      ...+++++||+......  .++. ..+++|||||+|+|+.++. .  ...+.++|++.|++++..
T Consensus       105 ~~~~~~~~~g~~~~~~~--~~~~-~~~~~~lID~~G~i~~~~~-g--~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          105 DLFKLLDAIDFRFMTAG--NDFI-HPNVVVVLSPELQIKDYIY-G--VNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             HHHHHHHHTTCCCEEET--TEEE-CCCEEEEECTTSBEEEEEE-S--SSCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCeEEecCC--Cccc-cCceEEEECCCCeEEEEEe-C--CCCCHHHHHHHHHHhhcc
Confidence            45789999987532110  0121 3578999999999999885 2  245699999999998743

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=97.26  E-value=0.00093  Score=52.76  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||++.|.+ ++++.|+.....     |+. ..+++||||++|+|+..+....    +.+++.+.|+.+-
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~-----~i~-~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~l~~~l  150 (165)
T 3or5_A           89 QGIIYPVMMATP-ELIRAFNGYIDG-----GIT-GIPTSFVIDASGNVSGVIVGPR----SKADFDRIVKMAL  150 (165)
T ss_dssp             HTCCSCEEECCH-HHHHHHHTTSTT-----CSC-SSSEEEEECTTSBEEEEECSCC----CHHHHHHHHHHHH
T ss_pred             cCCCCceEecCH-HHHHHHhhhhcc-----CCC-CCCeEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence            358999999976 999999765322     121 3579999999999998876433    4788888887763

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=97.17  E-value=0.00043  Score=69.18  Aligned_cols=45  Identities=4%  Similarity=-0.011  Sum_probs=40.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| ++||++|+..+|.+.++++++++ ++.++.|+.+..
T Consensus       674 ~~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~~  718 (780)
T 3apo_A          674 GKTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQAY  718 (780)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTC
T ss_pred             CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCCC
Confidence            4789999999 99999999999999999999965 589999998754

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.11  E-value=8.1e-05  Score=60.10  Aligned_cols=69  Identities=13%  Similarity=0.156  Sum_probs=39.4

Q ss_pred             CCCCceEEEeCc--cH-HHHHhCCCCCCCCCCCCCC--cccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQD--RS-LAVQLGMLDPVEKDSKGMP--LTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~--~~-va~~yG~~~~~~~~~~g~~--~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||+++|.+  +. +++.||++.....+..++|  .-.|++||||++|+|+..+....    +.+++.+.|++|.
T Consensus        94 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~ll  167 (171)
T 3cmi_A           94 YGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLT----KPSSLSETIEELL  167 (171)
T ss_dssp             -CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTS----CGGGGHHHHHHHH
T ss_pred             cCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCC----CHHHHHHHHHHHH
Confidence            679999999754  33 3333332211000001221  01459999999999999886433    3566666666653

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.06  E-value=0.00098  Score=53.77  Aligned_cols=48  Identities=13%  Similarity=0.122  Sum_probs=36.9

Q ss_pred             CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172         170 SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS  221 (276)
Q Consensus       170 ~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS  221 (276)
                      ....+. .-.++++|+.|| ..|||+|....+.|.++.+++.+  +.|+-+.
T Consensus        13 ~~~~~G-~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~   60 (175)
T 3gyk_A           13 NAPVLG-NPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPN--VRLVYRE   60 (175)
T ss_dssp             TSCEEE-CTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred             CCCCcC-CCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCC--EEEEEEe
Confidence            344555 557889999999 99999999999999999887643  5554443

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=96.99  E-value=0.00022  Score=56.51  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=29.7

Q ss_pred             CeEEEEEEcCCC--CcccHHHHHHHHHHHHHHHhCCcE--EEEEeCCC
Q psy1172         181 FWGILFSHPSDF--TPVCTTELARVLQLIKEFEQRTCK--VIALSCDS  224 (276)
Q Consensus       181 k~vvL~f~pa~~--cp~C~~el~~l~~~~~~~~~~gv~--Vv~VS~D~  224 (276)
                      +.+||+|| ++|  |++|+..+|.|.+++++|  .++.  ++.|++|.
T Consensus        35 ~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~--~~v~~~~~~Vd~d~   79 (142)
T 2es7_A           35 GDGVILLS-SDPRRTPEVSDNPVMIAELLREF--PQFDWQVAVADLEQ   79 (142)
T ss_dssp             CSEEEEEC-CCSCC----CCHHHHHHHHHHTC--TTSCCEEEEECHHH
T ss_pred             CCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh--cccceeEEEEECCC
Confidence            45677777 776  999999999999999998  3577  88888764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=96.98  E-value=0.0013  Score=51.03  Aligned_cols=52  Identities=12%  Similarity=0.123  Sum_probs=39.9

Q ss_pred             CCCCc-eEEEeCc---cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172          17 GKLPY-PIIADQD---RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS   87 (276)
Q Consensus        17 ~~l~f-pllsD~~---~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~   87 (276)
                      .+++| ++++|.+   .++++.||+.        +    .+++||||++|+|+....       +.+++.+.|+.
T Consensus        87 ~~~~~~~~~~d~~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~-------~~~~l~~~l~~  142 (143)
T 4fo5_A           87 DKLDLSTQFHEGLGKESELYKKYDLR--------K----GFKNFLINDEGVIIAANV-------TPEKLTEILKA  142 (143)
T ss_dssp             HTCCGGGEEECTTGGGSHHHHHTTGG--------G----CCCEEEECTTSBEEEESC-------CHHHHHHHHTC
T ss_pred             hCCCCceeeecccccchHHHHHcCCC--------C----CCcEEEECCCCEEEEccC-------CHHHHHHHHHh
Confidence            34899 8999984   6899999984        2    369999999999988653       25666666654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=96.95  E-value=0.0002  Score=53.77  Aligned_cols=40  Identities=15%  Similarity=0.085  Sum_probs=29.1

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+++++++ || ++|||+|+...+.|+++..     .+.++-|+.+.
T Consensus        17 ~~~~~vv~-f~-a~~C~~C~~~~~~l~~~~~-----~~~~v~v~~~~   56 (116)
T 2e7p_A           17 ASSAPVVV-FS-KTYCGYCNRVKQLLTQVGA-----SYKVVELDELS   56 (116)
T ss_dssp             HTSSSEEE-EE-CTTCHHHHHHHHHHHHHTC-----CCEEEEGGGST
T ss_pred             HcCCCEEE-EE-CCCChhHHHHHHHHHHcCC-----CeEEEEccCCC
Confidence            35667666 99 9999999999998887643     24666665554

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=96.87  E-value=0.0034  Score=50.43  Aligned_cols=68  Identities=12%  Similarity=0.029  Sum_probs=46.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCc
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDF  252 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~  252 (276)
                      .+|+++|+|+ ++||+.|+.--...   .++.+.+ ..++.++-+.+|+++ ..++.+++.-.   +++.-++.|++
T Consensus        41 ~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l-~~~fv~v~~d~~~~~-~~~l~~~y~v~---~~P~~~fld~~  111 (153)
T 2dlx_A           41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNII-REHFIFWQVYHDSEE-GQRYIQFYKLG---DFPYVSILDPR  111 (153)
T ss_dssp             HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHH-HHTEEEEEEESSSHH-HHHHHHHHTCC---SSSEEEEECTT
T ss_pred             cCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHH-HcCeEEEEEecCCHh-HHHHHHHcCCC---CCCEEEEEeCC
Confidence            4899999999 99999999764332   2222222 336888888887754 35677777322   56777777875

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=96.78  E-value=0.0012  Score=54.08  Aligned_cols=68  Identities=19%  Similarity=0.160  Sum_probs=40.7

Q ss_pred             CCCCceEEE--eCccHHHH-HhCCCCCCCCCCCCCCcccc---eEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIA--DQDRSLAV-QLGMLDPVEKDSKGMPLTCR---AVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fplls--D~~~~va~-~yG~~~~~~~~~~g~~~~~R---~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||+++  |.++..+. .|+.+.....+..|++ .++   ++||||++|+|+..+....    +.+++.+.|++|-
T Consensus       109 ~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~-~iP~~~~~~liD~~G~i~~~~~g~~----~~~~l~~~i~~lL  182 (187)
T 3dwv_A          109 FKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK-AIKWNFTSFLIDRDGVPVERFSPGA----SVKDIEEKLIPLL  182 (187)
T ss_dssp             CCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSS-SCCSTTCEEEECTTSCEEEEECTTC----CHHHHHHHHHHHC
T ss_pred             cCCCCceeeccccCCcchhHHHHHHHhhcCCccCCC-ccccceeEEEECCCCCEEEEECCCC----CHHHHHHHHHHHH
Confidence            479999997  66665442 2311110000001222 345   9999999999999986332    4777888887663

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=96.75  E-value=0.0014  Score=50.99  Aligned_cols=56  Identities=13%  Similarity=0.110  Sum_probs=43.1

Q ss_pred             CC-ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcc
Q psy1172          19 LP-YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQL   90 (276)
Q Consensus        19 l~-fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~   90 (276)
                      ++ ++++.|.+.++++.||+.        ++    +++||||++|+|+.....    ..+.+++.+.|+.+..
T Consensus        87 ~~~~~~~~d~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~~~~g----~~~~~~l~~~l~~~~~  143 (152)
T 2lja_A           87 LKGIQLHMGTDRTFMDAYLIN--------GI----PRFILLDRDGKIISANMT----RPSDPKTAEKFNELLG  143 (152)
T ss_dssp             CCSEEEECSSCTHHHHHTTCC--------SS----CCEEEECTTSCEEESSCC----CTTCHHHHHHHHHHHT
T ss_pred             CCCceeecCcchhHHHHcCcC--------CC----CEEEEECCCCeEEEccCC----CCCHHHHHHHHHHHhc
Confidence            44 588889999999999974        33    589999999999886432    2356888888887753

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=96.72  E-value=0.0031  Score=57.44  Aligned_cols=53  Identities=9%  Similarity=-0.094  Sum_probs=40.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHH------HHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTEL------ARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el------~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .+++++|.|| +.||++|...-      |.++++.+.++..++.+..|..+...   ..++++
T Consensus        29 ~~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~---~l~~~~   87 (367)
T 3us3_A           29 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDA---AVAKKL   87 (367)
T ss_dssp             HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTH---HHHHHH
T ss_pred             hCCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccH---HHHHHc
Confidence            3689999999 99999984332      57888888887778999999887543   345555

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=96.71  E-value=0.0013  Score=54.14  Aligned_cols=43  Identities=16%  Similarity=0.088  Sum_probs=37.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .++++|+.|| ..|||+|....+.|.++.+++.+ ++.+.-+.++
T Consensus        24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            5788999999 99999999999999999888755 5788888775

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.71  E-value=0.00056  Score=50.69  Aligned_cols=60  Identities=13%  Similarity=0.114  Sum_probs=40.1

Q ss_pred             CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         169 ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       169 G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      |....|.......++|+.|+ +.|||+|..-.+.|.++     ..++.+.-|++|+++. .++.+++
T Consensus         4 ~~~~~l~~~~~~~~~v~~f~-~~~C~~C~~~~~~L~~l-----~~~i~~~~vdi~~~~~-~el~~~~   63 (100)
T 1wjk_A            4 GSSGNLSASNRALPVLTLFT-KAPCPLCDEAKEVLQPY-----KDRFILQEVDITLPEN-STWYERY   63 (100)
T ss_dssp             CCCCCCCCSCCCCCEEEEEE-CSSCHHHHHHHHHTSTT-----SSSSEEEEEETTSSTT-HHHHHHS
T ss_pred             CcchhhhhccCCCCEEEEEe-CCCCcchHHHHHHHHHh-----hhCCeEEEEECCCcch-HHHHHHH
Confidence            33333443444567888888 99999999888877653     2458888899884332 4555555

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=96.69  E-value=0.0005  Score=56.49  Aligned_cols=68  Identities=19%  Similarity=0.164  Sum_probs=40.1

Q ss_pred             CCCCceEEE--eCccHHHH-HhCCCCCCCCCCCCCCcccc---eEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIA--DQDRSLAV-QLGMLDPVEKDSKGMPLTCR---AVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fplls--D~~~~va~-~yG~~~~~~~~~~g~~~~~R---~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++||++.  |.++.+++ .|+.+.....+..++| .+|   ++||||++|+|+..+....    +.+++.+.|++|-
T Consensus       111 ~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P-~i~~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~ll  184 (190)
T 2vup_A          111 FKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTK-AIKWNFTSFLIDRDGVPVERFSPGA----SVKDIEKKLIPLL  184 (190)
T ss_dssp             HCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCC-SCCSTTCEEEECTTSCEEEEECTTC----CHHHHHHHHHHHH
T ss_pred             cCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCc-cccccceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHH
Confidence            458899997  66666543 2221110000001221 123   8999999999999876433    4678888777764

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=96.66  E-value=0.00082  Score=47.35  Aligned_cols=49  Identities=10%  Similarity=0.037  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh-HHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV-ESHHDWIKAL  235 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~-~~~~~~~~~~  235 (276)
                      |+.|+ ++|||+|....+.|.++..++  .++.+.-|+++.. ...+++.+.+
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~vdi~~~~~~~~~l~~~~   52 (85)
T 1ego_A            3 TVIFG-RSGCPYCVRAKDLAEKLSNER--DDFQYQYVDIRAEGITKEDLQQKA   52 (85)
T ss_dssp             EEEEC-CTTSTHHHHHHHHHHHHHHHH--SSCEEEEECHHHHTCCSHHHHHHT
T ss_pred             EEEEe-CCCCCCHHHHHHHHHHHHhcC--CCceEEEEecccChHHHHHHHHHh
Confidence            56677 999999999999999988765  5788888877532 1123445544

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=96.58  E-value=0.00094  Score=56.66  Aligned_cols=33  Identities=9%  Similarity=0.091  Sum_probs=26.8

Q ss_pred             ceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          53 RAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        53 R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      |++||||++|+|+..+....    +.+++.+.|++|.
T Consensus       178 pttfLID~~G~vv~~~~g~~----~~~~l~~~I~~ll  210 (215)
T 2i3y_A          178 FEKFLVGPDGIPVMRWSHRA----TVSSVKTDILAYL  210 (215)
T ss_dssp             TCEEEECTTSCEEEEECTTS----CHHHHHHHHHHHG
T ss_pred             ceEEEECCCCeEEEEeCCCC----CHHHHHHHHHHHH
Confidence            79999999999999986433    3678888888765

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=96.57  E-value=0.0042  Score=47.95  Aligned_cols=51  Identities=10%  Similarity=0.077  Sum_probs=39.8

Q ss_pred             CCCCceEEEeCccH--HHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172          17 GKLPYPIIADQDRS--LAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD   86 (276)
Q Consensus        17 ~~l~fpllsD~~~~--va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~   86 (276)
                      .+++||.+.|.++.  +++.||+.        +    .+++||||++|+|++...       ..+++.+.|+
T Consensus        89 ~~~~~~~~~d~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~-------~~~~l~~~l~  141 (142)
T 3eur_A           89 FAKEWTNGYDKELVIKNKNLYDLR--------A----IPTLYLLDKNKTVLLKDA-------TLQKVEQYLA  141 (142)
T ss_dssp             SCTTSEEEECTTCHHHHTTCSCCT--------T----CSEEEEECTTCBEEEEEE-------CHHHHHHHHH
T ss_pred             cccccccccCccchhhhhhhcCCC--------c----CCeEEEECCCCcEEecCC-------CHHHHHHHHh
Confidence            55899999999876  67888874        3    369999999999998775       2566666654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=96.55  E-value=0.00088  Score=56.39  Aligned_cols=33  Identities=9%  Similarity=0.080  Sum_probs=25.6

Q ss_pred             ceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          53 RAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        53 R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      |++||||++|+|+..+....    +.+++.+.|++|.
T Consensus       160 ~ttflID~~G~i~~~~~g~~----~~~~l~~~I~~ll  192 (207)
T 2r37_A          160 FEKFLVGPDGIPIMRWHHRT----TVSNVKMDILSYM  192 (207)
T ss_dssp             TCEEEECTTSCEEEEECTTS----CHHHHHHHHHHHH
T ss_pred             ceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHH
Confidence            79999999999999987443    3577777776654

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=96.41  E-value=0.0022  Score=52.05  Aligned_cols=68  Identities=12%  Similarity=-0.066  Sum_probs=41.1

Q ss_pred             CCCCceEEE--eCccHHHH-HhCCCCCCCC--CCCCC-CcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIA--DQDRSLAV-QLGMLDPVEK--DSKGM-PLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fplls--D~~~~va~-~yG~~~~~~~--~~~g~-~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+++||++.  |.++..++ .|+.+.....  +..+. .-..+++||||++|+|++.+....    +.+++.+.|++|
T Consensus       109 ~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~l  182 (183)
T 2obi_A          109 YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPME----EPLVIEKDLPHY  182 (183)
T ss_dssp             TTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTS----CTHHHHTTSGGG
T ss_pred             cCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCC----CHHHHHHHHHHh
Confidence            669999998  77776553 4532211100  00010 002369999999999999876432    457777777654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=96.40  E-value=0.00085  Score=54.86  Aligned_cols=68  Identities=12%  Similarity=-0.028  Sum_probs=38.6

Q ss_pred             CCCCceEEE--eCccHHHH-HhCCCCCCCC--CCCCCCc-ccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIA--DQDRSLAV-QLGMLDPVEK--DSKGMPL-TCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fplls--D~~~~va~-~yG~~~~~~~--~~~g~~~-~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+++||+++  |.+++.++ .|+.+.....  +..+..+ ..+++||||++|+|++.+....    +.+++.+.|++|
T Consensus       111 ~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~l  184 (185)
T 2gs3_A          111 YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPME----EPLVIEKDLPHY  184 (185)
T ss_dssp             TTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTS----CGGGGGGGHHHH
T ss_pred             cCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCC----CHHHHHHHHHHh
Confidence            568999998  66665543 4533221110  0001100 1359999999999999986432    245555555543

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.31  E-value=0.0069  Score=50.57  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=40.0

Q ss_pred             CCCCeEEEEEEcCC-CCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         178 IPAFWGILFSHPSD-FTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       178 ~~gk~vvL~f~pa~-~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++..+++.|| +. ||++|....|.|.++.+.  ...+.++.|+.|.++. .+..+++
T Consensus        20 ~~~~v~lv~f~-~~~~C~~C~~~~~~~~~la~~--~~~v~~~~vd~~~~~~-~~~~~~~   74 (226)
T 1a8l_A           20 MVNPVKLIVFV-RKDHCQYCDQLKQLVQELSEL--TDKLSYEIVDFDTPEG-KELAKRY   74 (226)
T ss_dssp             CCSCEEEEEEE-CSSSCTTHHHHHHHHHHHHTT--CTTEEEEEEETTSHHH-HHHHHHT
T ss_pred             cCCCeEEEEEe-cCCCCchhHHHHHHHHHHHhh--CCceEEEEEeCCCccc-HHHHHHc
Confidence            45566678888 88 999999999999997754  3458899999886432 3445555

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=96.28  E-value=0.0035  Score=43.86  Aligned_cols=36  Identities=17%  Similarity=0.115  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      +..|| +.|||+|....+.|+++.++   .++.+..+.+|
T Consensus         4 ~~~f~-~~~C~~C~~~~~~l~~~~~~---~~~~~~~~~v~   39 (80)
T 2k8s_A            4 KAIFY-HAGCPVCVSAEQAVANAIDP---SKYTVEIVHLG   39 (80)
T ss_dssp             EEEEE-ECSCHHHHHHHHHHHHHSCT---TTEEEEEEETT
T ss_pred             eEEEe-CCCCCchHHHHHHHHHHHHh---cCCeEEEEEec
Confidence            66778 99999999999998877654   45555555555

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=96.25  E-value=0.0019  Score=51.27  Aligned_cols=61  Identities=16%  Similarity=0.196  Sum_probs=39.1

Q ss_pred             CCCCceEE--EeCccHHHH-Hh--------CCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172          17 GKLPYPII--ADQDRSLAV-QL--------GMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL   85 (276)
Q Consensus        17 ~~l~fpll--sD~~~~va~-~y--------G~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l   85 (276)
                      ++++||++  .|.++.+++ .|        |++.      .+++ -.+++||||++|+|++.+....    +.+++.+.|
T Consensus        95 ~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~------~~~p-~~~~~~lid~~G~i~~~~~g~~----~~~~l~~~i  163 (170)
T 2p5q_A           95 FKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFG------DDIQ-WNFAKFLVNKDGQVVDRYYPTT----SPLSLERDI  163 (170)
T ss_dssp             TCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTC------SCCC-STTCEEEECTTSCEEEEECTTS----CGGGGHHHH
T ss_pred             cCCCceeEeeeccCCCchHHHHHHHHhcCCCccC------Cccc-ccccEEEECCCCCEEEeeCCCC----CHHHHHHHH
Confidence            35889999  687776542 22        4421      1222 1238999999999999886433    345666666


Q ss_pred             Hhh
Q psy1172          86 DSL   88 (276)
Q Consensus        86 ~~l   88 (276)
                      ++|
T Consensus       164 ~~l  166 (170)
T 2p5q_A          164 KQL  166 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=96.19  E-value=0.005  Score=48.70  Aligned_cols=68  Identities=10%  Similarity=0.005  Sum_probs=39.4

Q ss_pred             CCCCceEEE--eCccHHHH-HhCCCCCCCCCCCCCC-cccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIA--DQDRSLAV-QLGMLDPVEKDSKGMP-LTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fplls--D~~~~va~-~yG~~~~~~~~~~g~~-~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||+++  |.++.+++ .|+.+.....+..|.+ ...+++||||++|+|++.+....+    .+++.+.|++|
T Consensus        94 ~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~----~~~l~~~i~~l  165 (169)
T 2v1m_A           94 YGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTA----PYDIEGDIMEL  165 (169)
T ss_dssp             HCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred             cCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCC----HHHHHHHHHHH
Confidence            458999997  77776553 3421110000000110 023589999999999998864333    45666666655

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=96.10  E-value=0.0011  Score=50.83  Aligned_cols=47  Identities=17%  Similarity=0.015  Sum_probs=30.0

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHH-HhCCcEEEEEeCCC
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEF-EQRTCKVIALSCDS  224 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~-~~~gv~Vv~VS~D~  224 (276)
                      +-+.+.+||.|| +.||++|+.--+.+...++.- +.+.+.|+-|.++.
T Consensus        15 ~~~~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~   62 (116)
T 3dml_A           15 DDKAELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRD   62 (116)
T ss_dssp             ----CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTS
T ss_pred             cccCCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCC
Confidence            345578999999 999999998766655443321 11236777777764

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=95.93  E-value=0.0064  Score=46.94  Aligned_cols=43  Identities=0%  Similarity=-0.140  Sum_probs=36.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+.++++.|| +. |.+|+...|.|.+++++|+++ +.++-|++|.
T Consensus        22 ~~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~   64 (133)
T 2djk_A           22 AGIPLAYIFA-ET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKA   64 (133)
T ss_dssp             TTSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTT
T ss_pred             CCCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHH
Confidence            3578999999 88 899999999999999998654 8899998874

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=95.90  E-value=0.0052  Score=46.34  Aligned_cols=39  Identities=13%  Similarity=0.140  Sum_probs=32.6

Q ss_pred             eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+|+.|| +.|||+|..-.+.|.++.+++   ++.+.-|++|.
T Consensus        30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~   68 (107)
T 2fgx_A           30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINIDG   68 (107)
T ss_dssp             CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTT
T ss_pred             cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECCC
Confidence            5688888 999999999999999887764   58888888874

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=95.89  E-value=0.0026  Score=53.40  Aligned_cols=33  Identities=12%  Similarity=0.069  Sum_probs=24.9

Q ss_pred             cceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          52 CRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        52 ~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .++|||||++|+|+..+....+    .+++.+.|++|
T Consensus       173 ~p~tflID~~G~i~~~~~g~~~----~~~l~~~I~~l  205 (208)
T 2f8a_A          173 NFEKFLVGPDGVPLRRYSRRFQ----TIDIEPDIEAL  205 (208)
T ss_dssp             TTCEEEECTTSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred             CceEEEEcCCCcEEEEeCCCCC----HHHHHHHHHHH
Confidence            3789999999999999874443    45666666655

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=95.86  E-value=0.0033  Score=51.05  Aligned_cols=31  Identities=13%  Similarity=0.213  Sum_probs=25.3

Q ss_pred             eEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          54 AVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        54 ~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++||||++|+|++.+...    .+.+++.+.|++|
T Consensus       149 ~~~lid~~G~i~~~~~g~----~~~~~l~~~i~~l  179 (181)
T 2p31_A          149 WKYLVAPDGKVVGAWDPT----VSVEEVRPQITAL  179 (181)
T ss_dssp             CEEEECTTSCEEEEECTT----SCHHHHHHHHHTT
T ss_pred             eEEEEcCCCCEEEEeCCC----CCHHHHHHHHHHH
Confidence            899999999999987632    3578888888765

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=95.85  E-value=0.0076  Score=49.29  Aligned_cols=42  Identities=10%  Similarity=0.101  Sum_probs=34.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~  222 (276)
                      .++++|+.|| ..|||+|....+.|.++.+++.+ ++.+.-+.+
T Consensus        24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred             CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence            5788999999 99999999999999988888755 566665554

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=95.78  E-value=0.027  Score=45.13  Aligned_cols=49  Identities=10%  Similarity=-0.000  Sum_probs=38.3

Q ss_pred             EEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC-cEEEEEeC
Q psy1172         172 VILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT-CKVIALSC  222 (276)
Q Consensus       172 v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g-v~Vv~VS~  222 (276)
                      +.+. .-.++.+|+.|+ ..+||+|....+.+.++.++|.+.| ++++-...
T Consensus        20 ~~~G-~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           20 LHIG-ESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             EEES-CTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             cccC-CCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            4555 446778888888 9999999999999999988885443 77776654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=95.71  E-value=0.0078  Score=49.22  Aligned_cols=42  Identities=14%  Similarity=0.032  Sum_probs=34.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~  222 (276)
                      .++++|+.|| ..|||+|....+.|.++.+++.. .+.+..+.+
T Consensus        21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred             CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence            4678899999 99999999999999998888754 577776665

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=95.68  E-value=0.014  Score=40.52  Aligned_cols=33  Identities=12%  Similarity=0.116  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      |+.|+ +.|||+|++..+.|.+       .|+.+..+++|.
T Consensus         3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~   35 (81)
T 1h75_A            3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR   35 (81)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred             EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence            56677 9999999988777664       567788888874

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.60  E-value=0.018  Score=54.94  Aligned_cols=51  Identities=10%  Similarity=-0.065  Sum_probs=39.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++..|..|| +.|||+|+...|.|+++..++.  ++.+..|++|...   +..+++
T Consensus       116 ~~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~~~---~~~~~~  166 (521)
T 1hyu_A          116 DGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQ---NEITER  166 (521)
T ss_dssp             CSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCH---HHHHHT
T ss_pred             CCCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechhhH---HHHHHh
Confidence            4667788888 9999999999999999887763  7888888887433   344445

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=94.57  E-value=0.0021  Score=49.37  Aligned_cols=48  Identities=13%  Similarity=0.095  Sum_probs=34.4

Q ss_pred             ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172          21 YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus        21 fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|+..|.++++++.||+.        +    .+++||||++|+|+.........+++.++
T Consensus        90 ~~~~~~~~~~~~~~~~v~--------~----~P~~~lid~~G~i~~~~~~~~~~~~~~~~  137 (143)
T 2lus_A           90 IPYRSGPASNVTAKYGIT--------G----IPALVIVKKDGTLISMNGRGEVQSLGPRA  137 (143)
Confidence            456677778999999974        3    35999999999999886543333344444

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=95.53  E-value=0.012  Score=49.36  Aligned_cols=38  Identities=8%  Similarity=-0.112  Sum_probs=30.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS  221 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS  221 (276)
                      .++++|+.|| ..|||+|++..+.|.++.    +.|+.|.-+.
T Consensus        85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~----~~~v~v~~~~  122 (211)
T 1t3b_A           85 NEKHVVTVFM-DITCHYCHLLHQQLKEYN----DLGITVRYLA  122 (211)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHTTHHHHH----HTTEEEEEEE
T ss_pred             CCCEEEEEEE-CCCCHhHHHHHHHHHHHH----hCCcEEEEEE
Confidence            4788999999 999999999999988743    3467776543

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=95.45  E-value=0.1  Score=41.80  Aligned_cols=36  Identities=17%  Similarity=0.376  Sum_probs=28.0

Q ss_pred             cceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          52 CRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        52 ~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++|||||+|+|+.++..  ....+.+++++.|++|-
T Consensus       134 ~~~~~liD~~G~i~~~~~g--~~~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          134 GTSFYLIDQNGKVMKKYSG--ISNTPYEDIIRDMKRLA  169 (170)
T ss_dssp             CCEEEEECTTSCEEEEEES--SSSCCHHHHHHHHHHHH
T ss_pred             eeEEEEEcCCCeEEEEECC--CCCCCHHHHHHHHHHHh
Confidence            3689999999999988762  22446899999998763

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=95.34  E-value=0.012  Score=48.59  Aligned_cols=43  Identities=14%  Similarity=0.085  Sum_probs=35.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .++++|+.|| ..|||+|....+.|.++.+++.+ .+.+.-+.++
T Consensus        23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred             CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence            4688999999 99999999999999988887755 5666666664

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=95.31  E-value=0.017  Score=45.60  Aligned_cols=49  Identities=14%  Similarity=0.104  Sum_probs=37.7

Q ss_pred             eCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          26 DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        26 D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      |.+.++++.||+.        |+    ++++|||++|+|+... ...  .++.+++++.|+++.
T Consensus       103 ~~~~~l~~~~~v~--------~~----Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~~~l~~~l  151 (154)
T 2ju5_A          103 QKNQELKAQYKVT--------GF----PELVFIDAEGKQLARM-GFE--PGGGAAYVSKVKSAL  151 (154)
T ss_dssp             HHHHHHHHHTTCC--------SS----SEEEEECTTCCEEEEE-CCC--TTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcCCC--------CC----CEEEEEcCCCCEEEEe-cCC--CCCHHHHHHHHHHHH
Confidence            4456899999985        44    5999999999998876 333  346889999888764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=95.15  E-value=0.09  Score=39.32  Aligned_cols=57  Identities=16%  Similarity=0.104  Sum_probs=42.9

Q ss_pred             CCCCceEE---EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPII---ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpll---sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .++.|-.+   .|.+.++++.||+.        ++    ++++++|++|+++..+...    .+.+++.+.|+.+.
T Consensus        57 ~~v~~~~v~~~~d~~~~~~~~~~v~--------~~----Pt~~~~~~~G~~~~~~~G~----~~~~~l~~~l~~~~  116 (126)
T 2l57_A           57 GKFNIYYARLEEEKNIDLAYKYDAN--------IV----PTTVFLDKEGNKFYVHQGL----MRKNNIETILNSLG  116 (126)
T ss_dssp             SSCEEEEEETTSSHHHHHHHHTTCC--------SS----SEEEEECTTCCEEEEEESC----CCHHHHHHHHHHHC
T ss_pred             CCeEEEEEeCCCCchHHHHHHcCCc--------ce----eEEEEECCCCCEEEEecCC----CCHHHHHHHHHHHh
Confidence            34666555   36678999999974        34    5999999999998876532    45788988888765

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=95.08  E-value=0.026  Score=38.23  Aligned_cols=44  Identities=14%  Similarity=0.123  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++.|+ +.|||+|++..+.|.+       .|+.+..+.++......++.+.+
T Consensus         3 i~~y~-~~~C~~C~~~~~~l~~-------~~i~~~~~di~~~~~~~~~~~~~   46 (75)
T 1r7h_A            3 ITLYT-KPACVQCTATKKALDR-------AGLAYNTVDISLDDEARDYVMAL   46 (75)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTTCHHHHHHHHHT
T ss_pred             EEEEe-CCCChHHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHc
Confidence            45677 9999999988877764       46777777777433333333333

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=95.05  E-value=0.0043  Score=48.11  Aligned_cols=55  Identities=9%  Similarity=0.139  Sum_probs=38.4

Q ss_pred             CceEEE-eCccHHHHHhCCCCCCCCCCCCCCcccceEEEEC-CCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCC
Q psy1172          20 PYPIIA-DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIID-PAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVA   97 (276)
Q Consensus        20 ~fplls-D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiId-p~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~   97 (276)
                      .||++. |.+.++++.||+.        ++    +++|||| ++|+|+.....                  +...+.+.+
T Consensus        88 ~~~~~~~d~~~~~~~~~~v~--------~~----Pt~~lid~~~G~i~~~~~~------------------~~~~~~~~~  137 (146)
T 1o8x_A           88 AVPFAQSEAVQKLSKHFNVE--------SI----PTLIGVDADSGDVVTTRAR------------------ATLVKDPEG  137 (146)
T ss_dssp             ECCGGGHHHHHHHHHHTTCC--------SS----SEEEEEETTTCCEEESCHH------------------HHHTTCTTC
T ss_pred             eeccchhhHHHHHHHHhCCC--------CC----CEEEEEECCCCeEEEecch------------------hHHhhCCcc
Confidence            455554 6678999999974        33    5999999 99999876431                  112334567


Q ss_pred             cCCCCCC
Q psy1172          98 TPVDWKV  104 (276)
Q Consensus        98 ~p~~w~~  104 (276)
                      +..+|++
T Consensus       138 ~~~~w~~  144 (146)
T 1o8x_A          138 EQFPWKD  144 (146)
T ss_dssp             TTTTCCC
T ss_pred             ccCCCCC
Confidence            8888885

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=94.88  E-value=0.0055  Score=51.11  Aligned_cols=42  Identities=17%  Similarity=0.100  Sum_probs=34.4

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      ++++|+-|| +.|||+|..-.|.|   .++.+++. .++.+.-+.++
T Consensus       113 ~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~-~~v~~~~~~v~  157 (197)
T 1un2_A          113 GAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLP-EGVKMTKYHVN  157 (197)
T ss_dssp             TCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSC-TTCCEEEEECS
T ss_pred             CCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCC-CCCEEEEeccC
Confidence            578999999 99999999999988   87777774 35777777765

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=94.78  E-value=0.028  Score=48.35  Aligned_cols=52  Identities=4%  Similarity=0.006  Sum_probs=38.5

Q ss_pred             CCCeEEEEEEcC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCC--hHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPS--DFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDS--VESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa--~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~--~~~~~~~~~~~  235 (276)
                      .+++++|.|| +  .||+    -.|.+.++.++++. .++.|..|++|+  .......++++
T Consensus        21 ~~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~   77 (240)
T 2qc7_A           21 KSKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY   77 (240)
T ss_dssp             GCSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHT
T ss_pred             CCCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHc
Confidence            3578999999 8  8887    78899999999864 458888888765  22234455666

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=94.78  E-value=0.013  Score=42.33  Aligned_cols=42  Identities=12%  Similarity=0.106  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      |+.|| +.||++|..-.+.|.++..++      +.-|++|...   ++.+++
T Consensus         3 vv~f~-a~~C~~C~~~~~~L~~~~~~~------~~~vdid~~~---~l~~~~   44 (87)
T 1ttz_A            3 LTLYQ-RDDCHLCDQAVEALAQARAGA------FFSVFIDDDA---ALESAY   44 (87)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHTTCCC------EEEEECTTCH---HHHHHH
T ss_pred             EEEEE-CCCCchHHHHHHHHHHHHHhh------eEEEECCCCH---HHHHHh
Confidence            67788 999999998888877543221      4567776422   244555

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=94.52  E-value=0.022  Score=45.89  Aligned_cols=36  Identities=6%  Similarity=0.066  Sum_probs=28.0

Q ss_pred             eEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          54 AVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        54 ~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++||||++|+|+..+....+...-..+|.+.|+++.
T Consensus       138 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~  173 (180)
T 3kij_A          138 WKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVI  173 (180)
T ss_dssp             CEEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHH
T ss_pred             eEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            499999999999998866666655666777776665

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=94.51  E-value=0.05  Score=45.37  Aligned_cols=52  Identities=10%  Similarity=-0.103  Sum_probs=36.5

Q ss_pred             CeEEEEEEc----CCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCChHHHHHHHHHH
Q psy1172         181 FWGILFSHP----SDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       181 k~vvL~f~p----a~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++|.||.    +.||++|...+|.+.++++++.+ ..+.+..|..+..   .+..+++
T Consensus        21 ~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---~~l~~~~   77 (229)
T 2ywm_A           21 EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTH---KEETEKY   77 (229)
T ss_dssp             SCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTC---HHHHHHT
T ss_pred             CCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCccc---HHHHHHc
Confidence            466666661    66788888999999999888853 3478888877643   3445555

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=94.45  E-value=0.036  Score=44.96  Aligned_cols=42  Identities=5%  Similarity=-0.001  Sum_probs=33.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~  222 (276)
                      .++.+|+.|| ..+||+|....+.|.++.+++.. .+.+..+.+
T Consensus        24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            4667888888 99999999999999988887743 467665654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=94.14  E-value=0.089  Score=44.87  Aligned_cols=41  Identities=12%  Similarity=0.105  Sum_probs=31.2

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~  222 (276)
                      -.++.+|+.|+ ..|||+|++..+.+.++.++   .++.|+-+.+
T Consensus        95 ~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~  135 (241)
T 1v58_A           95 KDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLV  135 (241)
T ss_dssp             TTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEEC
T ss_pred             CCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEEC
Confidence            35778899999 99999999999998876553   3476665543

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=93.77  E-value=0.11  Score=44.96  Aligned_cols=53  Identities=4%  Similarity=-0.019  Sum_probs=38.6

Q ss_pred             CCCeEEEEEEc-CCCCcccHHHHHHHHHHHHHHHh--CCcEEEEEeCCC--hHHHHHHHHHH
Q psy1172         179 PAFWGILFSHP-SDFTPVCTTELARVLQLIKEFEQ--RTCKVIALSCDS--VESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~p-a~~cp~C~~el~~l~~~~~~~~~--~gv~Vv~VS~D~--~~~~~~~~~~~  235 (276)
                      .++++||.||- +.||+    -.|.+.++.++|..  ..+.|.-|++|.  .......++++
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~   89 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   89 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence            45789999995 78887    78899999999975  468888888775  11123455555

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=93.63  E-value=0.026  Score=46.26  Aligned_cols=48  Identities=8%  Similarity=0.097  Sum_probs=34.6

Q ss_pred             ecccCCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCC
Q psy1172         174 LECSIPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       174 l~~~~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      |.....++++|+.|| ..|||+|..-.+.+   .++.+++.+ ++.++-+.+.
T Consensus         8 l~~p~~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~   58 (189)
T 3l9v_A            8 ITPPVVDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS   58 (189)
T ss_dssp             CSSCCTTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred             eCCCCCCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence            333455689999999 99999999998886   355454533 5777776654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=93.62  E-value=0.013  Score=45.00  Aligned_cols=37  Identities=11%  Similarity=0.155  Sum_probs=27.7

Q ss_pred             CceEEE-eCccHHHHHhCCCCCCCCCCCCCCcccceEEEEC-CCCcEEEEE
Q psy1172          20 PYPIIA-DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIID-PAKKLRLSF   68 (276)
Q Consensus        20 ~fplls-D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiId-p~g~I~~~~   68 (276)
                      .||+.. |.+.++++.||+.        ++    +++|||| ++|+|+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~v~--------~~----Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A           88 ALPFDQRSTVSELGKTFGVE--------SI----PTLITINADTGAIIGTQ  126 (144)
T ss_dssp             ECCTTCHHHHHHHHHHHTCC--------SS----SEEEEEETTTCCEEESC
T ss_pred             EeeccchhHHHHHHHHcCCC--------CC----CEEEEEECCCCeEEecc
Confidence            344444 5577899999974        33    5999999 899998754

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=93.59  E-value=0.16  Score=38.04  Aligned_cols=47  Identities=11%  Similarity=0.194  Sum_probs=36.8

Q ss_pred             CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          27 QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        27 ~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+.++++.||+.        ++    ++++++|++|++...+...    ++.+++.+.|+.+.
T Consensus        74 ~~~~~~~~~~v~--------~~----Pt~~~~d~~G~~~~~~~G~----~~~~~l~~~l~~~~  120 (130)
T 2kuc_A           74 EGVELRKKYGVH--------AY----PTLLFINSSGEVVYRLVGA----EDAPELLKKVKLGV  120 (130)
T ss_dssp             THHHHHHHTTCC--------SS----CEEEEECTTSCEEEEEESC----CCHHHHHHHHHHHH
T ss_pred             chHHHHHHcCCC--------CC----CEEEEECCCCcEEEEecCC----CCHHHHHHHHHHHH
Confidence            467899999974        44    5999999999998876533    35788888888765

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=93.53  E-value=0.076  Score=47.56  Aligned_cols=52  Identities=12%  Similarity=0.119  Sum_probs=39.8

Q ss_pred             CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++|.|| +.||+.|...++.|.+++++|+++ +.++.|..|..+ ....++.+
T Consensus       136 ~~~~v~F~-~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~~-~~~~~~~f  187 (361)
T 3uem_A          136 KTHILLFL-PKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHTD-NQRILEFF  187 (361)
T ss_dssp             CEEEEEEC-CSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSGG-GHHHHHHT
T ss_pred             CcEEEEEE-eCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChHH-HHHHHHHc
Confidence            46678888 999999999999999999999765 777777776322 33445555

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=93.29  E-value=0.058  Score=44.09  Aligned_cols=39  Identities=5%  Similarity=-0.101  Sum_probs=32.0

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~  222 (276)
                      ++++|+.|| ..|||+|.+-.|.+.++.+++   ++.+.-+.+
T Consensus        22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~   60 (185)
T 3feu_A           22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMHI   60 (185)
T ss_dssp             CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEEC
T ss_pred             CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEec
Confidence            688999999 999999999999999988888   455544444

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=93.26  E-value=0.18  Score=35.50  Aligned_cols=43  Identities=9%  Similarity=0.204  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++.|+ +.|||+|++..+.|.+       .++.+.-+.++ ++..+++.+..
T Consensus         8 v~~y~-~~~C~~C~~~~~~L~~-------~~i~~~~vdv~-~~~~~~l~~~~   50 (89)
T 2klx_A            8 IILYT-RPNCPYCKRARDLLDK-------KGVKYTDIDAS-TSLRQEMVQRA   50 (89)
T ss_dssp             EEEES-CSCCTTTHHHHHHHHH-------HTCCEEEECSC-HHHHHHHHHHH
T ss_pred             EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECC-HHHHHHHHHHh
Confidence            45566 8999999987776664       35667777777 44344444433

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=92.95  E-value=0.038  Score=40.31  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQL  206 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~  206 (276)
                      |+.|+ +.|||+|++-.+.|.++
T Consensus        14 v~~f~-~~~C~~C~~~~~~L~~~   35 (105)
T 1kte_A           14 VVVFI-KPTCPFCRKTQELLSQL   35 (105)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHHS
T ss_pred             EEEEE-cCCCHhHHHHHHHHHHc
Confidence            56677 99999999888877653

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=92.64  E-value=0.16  Score=37.16  Aligned_cols=47  Identities=4%  Similarity=0.028  Sum_probs=28.9

Q ss_pred             EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         183 GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       183 vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .|+.|+ +.|||+|++-.+.|.++     ...++.+-|..++.+...++.+..
T Consensus        23 ~v~ly~-~~~Cp~C~~ak~~L~~~-----~i~y~~vdI~~~~~~~~~~~~~~l   69 (103)
T 3nzn_A           23 KVIMYG-LSTCVWCKKTKKLLTDL-----GVDFDYVYVDRLEGKEEEEAVEEV   69 (103)
T ss_dssp             CEEEEE-CSSCHHHHHHHHHHHHH-----TBCEEEEEGGGCCHHHHHHHHHHH
T ss_pred             eEEEEc-CCCCchHHHHHHHHHHc-----CCCcEEEEeeccCcccHHHHHHHH
Confidence            466677 99999999988777653     223445444443454444555443

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=92.51  E-value=0.13  Score=43.80  Aligned_cols=52  Identities=12%  Similarity=-0.034  Sum_probs=37.2

Q ss_pred             CCeEEEEEEcCCC--CcccHHHHHHHHHHHHHHHh-CC---cEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDF--TPVCTTELARVLQLIKEFEQ-RT---CKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~--cp~C~~el~~l~~~~~~~~~-~g---v~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +++++|.|| +.|  |++|..-.+.+.++.+.+.. +|   +.++-++.|...   ...+++
T Consensus        25 ~~pv~v~~~-~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~---~~~~~~   82 (243)
T 2hls_A           25 VNPVEVHVF-LSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDS---DKFSEF   82 (243)
T ss_dssp             CSCEEEEEE-ECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTH---HHHHHT
T ss_pred             CCCEEEEEE-eCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCH---HHHHhc
Confidence            478999999 888  99999998888888877421 22   677777766432   334555

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=92.07  E-value=0.035  Score=42.63  Aligned_cols=38  Identities=5%  Similarity=0.072  Sum_probs=28.9

Q ss_pred             CceEEE-eCccHHHHHhCCCCCCCCCCCCCCcccceEEEEC-CCCcEEEEEe
Q psy1172          20 PYPIIA-DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIID-PAKKLRLSFL   69 (276)
Q Consensus        20 ~fplls-D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiId-p~g~I~~~~~   69 (276)
                      .||++. |.+.++++.||+.        ++    +++|||| ++|+|+....
T Consensus        88 ~~~~~~~d~~~~~~~~~~v~--------~~----P~~~lid~~~G~i~~~~~  127 (144)
T 1i5g_A           88 ALPFEDRKGMEFLTTGFDVK--------SI----PTLVGVEADSGNIITTQA  127 (144)
T ss_dssp             ECCTTCHHHHHHHHHHTTCC--------SS----SEEEEEETTTCCEEESCH
T ss_pred             ccccCchHHHHHHHHHcCCC--------CC----CEEEEEECCCCcEEeccc
Confidence            455555 6678999999974        33    5999999 9999987653

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=92.02  E-value=0.07  Score=40.71  Aligned_cols=48  Identities=19%  Similarity=0.201  Sum_probs=35.3

Q ss_pred             eCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEE--EEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          26 DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLR--LSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        26 D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~--~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      |.+.++++.||+.        |+    ++++++|++|+++  ..+.    -..+.+++++.|+.++
T Consensus        78 ~~~~~l~~~~~v~--------~~----Pt~~~~d~~G~~v~~~~~~----G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           78 AQDVALLKHLNVL--------GL----PTILFFDGQGQEHPQARVT----GFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             HHHHHHHHHTTCC--------SS----SEEEEECTTSCBCGGGCBC----SCCCHHHHHHHHHHC-
T ss_pred             chHHHHHHHcCCC--------CC----CEEEEECCCCCEeeeeeee----eccCHHHHHHHHHhcC
Confidence            4567899999984        44    5999999999986  3332    2246889999998876

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=91.85  E-value=0.22  Score=37.49  Aligned_cols=62  Identities=16%  Similarity=0.165  Sum_probs=41.9

Q ss_pred             CCceEEE----eCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEec-CCCC--CCCHHHHHHHHHhhc
Q psy1172          19 LPYPIIA----DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLY-PATT--GRNFDEILRVLDSLQ   89 (276)
Q Consensus        19 l~fplls----D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~-~~~~--~r~~~eilr~l~~lq   89 (276)
                      +.|--+.    |.+.++++.||+....     |+    ++++++|++|+++..... ....  ..+.+++.+.|+.|.
T Consensus        64 ~~~~~vd~~~~~~~~~l~~~~~v~~~~-----~~----Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           64 FEVVKIDVGNFDRNLELSQAYGDPIQD-----GI----PAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             CEEEEEECTTTTSSHHHHHHTTCGGGG-----CS----SEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEEEEEeCCcccchHHHHHHhCCccCC-----cc----ceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            4544443    6788999999983210     44    599999999999887664 1111  236788888887663

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=91.50  E-value=0.03  Score=49.60  Aligned_cols=29  Identities=10%  Similarity=0.096  Sum_probs=24.2

Q ss_pred             CeEEEEEEcCCCCcccHHHHHHHHHHHHHH
Q psy1172         181 FWGILFSHPSDFTPVCTTELARVLQLIKEF  210 (276)
Q Consensus       181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~  210 (276)
                      +..++.|| +.|||+|++..|.++++.+++
T Consensus       198 ~~~vV~F~-A~WC~~Ck~l~p~le~lA~~l  226 (291)
T 3kp9_A          198 QIGGTMYG-AYWCPHCQDQKELFGAAFDQV  226 (291)
T ss_dssp             HTTCEEEE-CTTCHHHHHHHHHHGGGGGGS
T ss_pred             CCCEEEEE-CCCCHHHHHHHHHHHHHHHHc
Confidence            34578899 999999999999999876554

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.42  E-value=0.24  Score=37.88  Aligned_cols=35  Identities=9%  Similarity=0.036  Sum_probs=23.4

Q ss_pred             CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +.++| |+ +.|||+|++-.+.|.++       ++.+..|.+|.
T Consensus        27 ~~vvv-f~-~~~Cp~C~~~~~~L~~~-------~i~~~~vdid~   61 (130)
T 2cq9_A           27 NCVVI-FS-KTSCSYCTMAKKLFHDM-------NVNYKVVELDL   61 (130)
T ss_dssp             SSEEE-EE-CSSCSHHHHHHHHHHHH-------TCCCEEEETTT
T ss_pred             CcEEE-EE-cCCChHHHHHHHHHHHc-------CCCcEEEECcC
Confidence            34444 77 99999999888777653       34445555553

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=91.01  E-value=0.34  Score=35.28  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=24.5

Q ss_pred             EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         183 GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       183 vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      -|+.|+ ..|||+|.+-...|.+       .|+.+.-+.+|..
T Consensus        17 ~v~vy~-~~~Cp~C~~ak~~L~~-------~~i~y~~idI~~~   51 (99)
T 3qmx_A           17 KIEIYT-WSTCPFCMRALALLKR-------KGVEFQEYCIDGD   51 (99)
T ss_dssp             CEEEEE-CTTCHHHHHHHHHHHH-------HTCCCEEEECTTC
T ss_pred             CEEEEE-cCCChhHHHHHHHHHH-------CCCCCEEEEcCCC
Confidence            455677 8999999988777765       3555556666543

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=90.86  E-value=0.39  Score=32.75  Aligned_cols=44  Identities=16%  Similarity=0.232  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKAL  235 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~  235 (276)
                      ++.|+ ..|||+|++-.+.|.+       .|+.+.-+.++. +....++.+..
T Consensus         3 i~~y~-~~~C~~C~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~   47 (82)
T 1fov_A            3 VEIYT-KETCPYCHRAKALLSS-------KGVSFQELPIDGNAAKREEMIKRS   47 (82)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHH-------HTCCCEEEECTTCSHHHHHHHHHH
T ss_pred             EEEEE-CCCChhHHHHHHHHHH-------CCCCcEEEECCCCHHHHHHHHHHh
Confidence            45566 8999999987777664       355555566653 33334455444

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=90.63  E-value=1.1  Score=33.90  Aligned_cols=55  Identities=11%  Similarity=0.177  Sum_probs=39.5

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++|++|++. .+.    .+++.+++.+.|+.+.
T Consensus        70 ~v~~~~vd~~~~~~l~~~~~v~--------~~----Pt~~~~~~~G~~~-~~~----G~~~~~~l~~~l~~~~  125 (136)
T 2l5l_A           70 QIVIYKVDTEKEQELAGAFGIR--------SI----PSILFIPMEGKPE-MAQ----GAMPKASFKKAIDEFL  125 (136)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC--------SS----CEEEEECSSSCCE-EEE----SCCCHHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCHHHHHHcCCC--------CC----CEEEEECCCCcEE-EEe----CCCCHHHHHHHHHHHh
Confidence            4555333 45677899999984        34    5999999999986 332    2456889998888764

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=90.17  E-value=0.26  Score=36.61  Aligned_cols=34  Identities=12%  Similarity=0.069  Sum_probs=24.1

Q ss_pred             eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcE---EEEEeCC
Q psy1172         182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCK---VIALSCD  223 (276)
Q Consensus       182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~---Vv~VS~D  223 (276)
                      ..|+.|+ ++|||+|.+-.+.|.       +.++.   +..|.+|
T Consensus        19 ~~vv~f~-~~~Cp~C~~~~~~L~-------~~~~~~~~~~~vdi~   55 (114)
T 2hze_A           19 NKVTIFV-KYTCPFCRNALDILN-------KFSFKRGAYEIVDIK   55 (114)
T ss_dssp             TCEEEEE-CTTCHHHHHHHHHHT-------TSCBCTTSEEEEEGG
T ss_pred             CCEEEEE-eCCChhHHHHHHHHH-------HcCCCcCceEEEEcc
Confidence            3466678 999999998777665       35555   6666665

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=89.65  E-value=1.1  Score=33.83  Aligned_cols=54  Identities=11%  Similarity=0.231  Sum_probs=39.1

Q ss_pred             CCCc-eEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPY-PIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~f-pllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.| .+-.|.+.++++.||+.        ++    ++++++|++|++. .+..    .++.+++.+.|+.+
T Consensus        83 ~~~~~~v~~~~~~~~~~~~~v~--------~~----Pt~~~~~~~g~~~-~~~G----~~~~~~l~~~l~~~  137 (141)
T 3hxs_A           83 KIYIYKVNVDKEPELARDFGIQ--------SI----PTIWFVPMKGEPQ-VNMG----ALSKEQLKGYIDKV  137 (141)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC--------SS----SEEEEECSSSCCE-EEES----CCCHHHHHHHHHHT
T ss_pred             ceEEEEEECCCCHHHHHHcCCC--------Cc----CEEEEEeCCCCEE-EEeC----CCCHHHHHHHHHHH
Confidence            4555 34456788999999985        44    5899999999986 3332    34688888888765

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=89.60  E-value=0.078  Score=42.10  Aligned_cols=28  Identities=4%  Similarity=0.009  Sum_probs=23.0

Q ss_pred             cHHHHHhCCCCCCCCCCCCCCcccceEEEECCC-CcEEEEE
Q psy1172          29 RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA-KKLRLSF   68 (276)
Q Consensus        29 ~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~-g~I~~~~   68 (276)
                      .++++.||+.        +    .+++||||++ |+|+...
T Consensus       118 ~~l~~~~~v~--------~----~Pt~~lid~~~G~iv~~~  146 (165)
T 3s9f_A          118 EALTKKYSVE--------S----IPTLIGLNADTGDTVTTR  146 (165)
T ss_dssp             HHHHHHTTCC--------S----SSEEEEEETTTCCEEESC
T ss_pred             HHHHHHcCCC--------C----CCEEEEEeCCCCEEEecc
Confidence            7899999974        3    3699999998 9997754

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=89.24  E-value=0.35  Score=35.66  Aligned_cols=21  Identities=10%  Similarity=0.226  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcccHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQ  205 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~  205 (276)
                      |+.|+ ..|||+|.+-.+.|.+
T Consensus        21 v~vy~-~~~Cp~C~~~~~~L~~   41 (113)
T 3rhb_A           21 VVIYS-KTWCSYCTEVKTLFKR   41 (113)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH
T ss_pred             EEEEE-CCCChhHHHHHHHHHH
Confidence            55577 8999999987777664

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=89.23  E-value=0.49  Score=33.26  Aligned_cols=44  Identities=9%  Similarity=0.157  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHH
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKAL  235 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~  235 (276)
                      ++.|+ ..|||+|++-.+.|.+       .|+.+.-+.++. +...+++.+..
T Consensus         8 v~ly~-~~~C~~C~~~~~~L~~-------~~i~~~~~di~~~~~~~~~l~~~~   52 (92)
T 2khp_A            8 VIIYT-RPGCPYCARAKALLAR-------KGAEFNEIDASATPELRAEMQERS   52 (92)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEESTTSHHHHHHHHHHH
T ss_pred             EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHh
Confidence            55667 8999999987666653       467666777764 33334444444

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=89.13  E-value=0.4  Score=34.97  Aligned_cols=48  Identities=6%  Similarity=-0.182  Sum_probs=28.5

Q ss_pred             CCCeEEEEEEcC-----CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPS-----DFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa-----~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~~~~~  235 (276)
                      +.++++| |+ .     .|||+|.+-.+.|.++       ++.+.-+.++ +++..+.+.+..
T Consensus        15 ~~~~vvv-f~-~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~~~~~~~~~l~~~~   68 (105)
T 2yan_A           15 NKASVML-FM-KGNKQEAKCGFSKQILEILNST-------GVEYETFDILEDEEVRQGLKAYS   68 (105)
T ss_dssp             TSSSEEE-EE-SBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGGGCHHHHHHHHHHH
T ss_pred             ccCCEEE-EE-ecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECCCCHHHHHHHHHHH
Confidence            3345554 66 5     8999999877776543       5666666665 333333344444

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=88.97  E-value=1.6  Score=30.72  Aligned_cols=54  Identities=7%  Similarity=0.058  Sum_probs=38.0

Q ss_pred             CCCceEEE-eCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPIIA-DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fplls-D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+. |.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+++
T Consensus        52 ~~~~~~v~~~~~~~~~~~~~v~--------~~----Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  106 (107)
T 2i4a_A           52 KVTVAKVNIDDNPETPNAYQVR--------SI----PTLMLV-RDGKVIDKKVGA----LPKSQLKAWVESA  106 (107)
T ss_dssp             SEEEEEEETTTCCHHHHHTTCC--------SS----SEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHT
T ss_pred             cEEEEEEECCCCHHHHHhcCCC--------cc----CEEEEE-eCCEEEEEecCC----CCHHHHHHHHHhc
Confidence            45553333 6678999999974        34    478888 899988766532    3578888888765

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=88.82  E-value=0.32  Score=38.22  Aligned_cols=24  Identities=8%  Similarity=0.033  Sum_probs=18.1

Q ss_pred             CeEEEEEEcCCCCcccHHHHHHHHHH
Q psy1172         181 FWGILFSHPSDFTPVCTTELARVLQL  206 (276)
Q Consensus       181 k~vvL~f~pa~~cp~C~~el~~l~~~  206 (276)
                      +.++| |+ +.|||+|.+-.+.|.++
T Consensus        49 ~~Vvv-f~-~~~Cp~C~~~k~~L~~~   72 (146)
T 2ht9_A           49 NCVVI-FS-KTSCSYCTMAKKLFHDM   72 (146)
T ss_dssp             CSEEE-EE-CTTCHHHHHHHHHHHHH
T ss_pred             CCEEE-EE-CCCChhHHHHHHHHHHc
Confidence            34444 77 99999999888877653

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=88.79  E-value=0.28  Score=40.19  Aligned_cols=53  Identities=13%  Similarity=0.113  Sum_probs=37.0

Q ss_pred             CCCe-EEecccCCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeC
Q psy1172         168 QASL-VILECSIPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       168 ~G~~-v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~  222 (276)
                      .|+. ..|.....++++|+.|| ..+||+|.+-.+.|   .++.+++.+ ++.++-+..
T Consensus         8 eG~~Y~~l~~p~~~~~~vvef~-d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~   64 (191)
T 3l9s_A            8 DGKQYITLDKPVAGEPQVLEFF-SFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHV   64 (191)
T ss_dssp             BTTTEEECSSCCCSSSCEEEEE-CTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEEC
T ss_pred             CCCCceEcCCCCCCCCeEEEEE-CCCChhHHHhChhccchHHHHHhCCC-CcEEEEEec
Confidence            4543 33444556789999999 99999999998876   466666643 466665554

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=88.42  E-value=1.8  Score=30.44  Aligned_cols=54  Identities=9%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+++
T Consensus        49 ~v~~~~v~~~~~~~~~~~~~v~--------~~----Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  103 (105)
T 1nsw_A           49 KVTVAKLNVDENPETTSQFGIM--------SI----PTLILF-KGGRPVKQLIGY----QPKEQLEAQLADV  103 (105)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC--------SS----SEEEEE-ETTEEEEEEESC----CCHHHHHHHTTTT
T ss_pred             CcEEEEEECcCCHHHHHHcCCc--------cc----cEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHH
Confidence            4555444 36678999999984        44    488888 899987766532    3467787777654

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=88.32  E-value=0.54  Score=33.02  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      |..|+ ..|||+|++-...|.++     ...++.+-|...+.
T Consensus        14 v~ly~-~~~Cp~C~~~~~~L~~~-----gi~~~~~~v~~~~~   49 (92)
T 3ic4_A           14 VLMYG-LSTCPHCKRTLEFLKRE-----GVDFEVIWIDKLEG   49 (92)
T ss_dssp             SEEEE-CTTCHHHHHHHHHHHHH-----TCCCEEEEGGGCCH
T ss_pred             EEEEE-CCCChHHHHHHHHHHHc-----CCCcEEEEeeeCCc
Confidence            55566 89999999877766653     23345555543333

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=88.14  E-value=0.83  Score=33.55  Aligned_cols=49  Identities=6%  Similarity=-0.172  Sum_probs=30.0

Q ss_pred             CCCeEEEEEEcC----CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPS----DFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa----~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~  235 (276)
                      +...|+| |..+    .|||+|.+-...|.+       .|+.+.-|.++. ++..+.+.+..
T Consensus        13 ~~~~vvv-y~~g~~~~~~Cp~C~~ak~~L~~-------~~i~~~~vdi~~~~~~~~~l~~~~   66 (109)
T 1wik_A           13 NKASVML-FMKGNKQEAKCGFSKQILEILNS-------TGVEYETFDILEDEEVRQGLKTFS   66 (109)
T ss_dssp             TTSSEEE-EESSTTTCCCSSTHHHHHHHHHH-------TCSCEEEEESSSCHHHHHHHHHHH
T ss_pred             ccCCEEE-EEecCCCCCCCchHHHHHHHHHH-------cCCCeEEEECCCCHHHHHHHHHHh
Confidence            3445554 5524    899999987766653       577777777764 33333344443

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=88.03  E-value=1.9  Score=31.09  Aligned_cols=55  Identities=11%  Similarity=0.202  Sum_probs=39.5

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+.+.
T Consensus        49 ~v~~~~vd~~~~~~l~~~~~v~--------~~----Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~~  104 (112)
T 2voc_A           49 KLKIVKIDVDENQETAGKYGVM--------SI----PTLLVL-KDGEVVETSVGF----KPKEALQELVNKHL  104 (112)
T ss_dssp             TCEEEEEETTTCCSHHHHTTCC--------SB----SEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTTS
T ss_pred             CcEEEEEECCCCHHHHHHcCCC--------cc----cEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHHH
Confidence            4665444 36778999999984        33    588888 899998776643    35788888887654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=88.00  E-value=0.42  Score=35.87  Aligned_cols=32  Identities=19%  Similarity=0.382  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcccHHH-HHHHHHHHHHHHhCC---cEEEEEeCC
Q psy1172         184 ILFSHPSDFTPVCTTE-LARVLQLIKEFEQRT---CKVIALSCD  223 (276)
Q Consensus       184 vL~f~pa~~cp~C~~e-l~~l~~~~~~~~~~g---v~Vv~VS~D  223 (276)
                      |+.|+ ++|||+|.+- .+.|.       +.+   +.+..|.+|
T Consensus        27 Vvvf~-~~~Cp~C~~alk~~L~-------~~~~~~i~~~~vdid   62 (118)
T 3c1r_A           27 IFVAS-KTYCPYCHAALNTLFE-------KLKVPRSKVLVLQLN   62 (118)
T ss_dssp             EEEEE-CSSCHHHHHHHHHHHT-------TSCCCGGGEEEEEGG
T ss_pred             EEEEE-cCCCcCHHHHHHHHHH-------HcCCCCCCeEEEECc
Confidence            55577 8999999987 44433       455   667777765

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=87.81  E-value=2  Score=30.43  Aligned_cols=54  Identities=17%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+++
T Consensus        52 ~~~~~~v~~~~~~~~~~~~~v~--------~~----Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  106 (108)
T 2trx_A           52 KLTVAKLNIDQNPGTAPKYGIR--------GI----PTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN  106 (108)
T ss_dssp             TEEEEEEETTTCTTHHHHTTCC--------SS----SEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHcCCc--------cc----CEEEEE-eCCEEEEEEecC----CCHHHHHHHHHHh
Confidence            3555433 35678899999975        44    478888 899988766533    3578888887764

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=87.44  E-value=1.1  Score=32.31  Aligned_cols=33  Identities=3%  Similarity=0.058  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      |..|. .+|||+|.+--..|.       ++|+..--+.++.
T Consensus         6 I~vYs-~~~Cp~C~~aK~~L~-------~~gi~y~~idi~~   38 (92)
T 2lqo_A            6 LTIYT-TSWCGYCLRLKTALT-------ANRIAYDEVDIEH   38 (92)
T ss_dssp             EEEEE-CTTCSSHHHHHHHHH-------HTTCCCEEEETTT
T ss_pred             EEEEc-CCCCHhHHHHHHHHH-------hcCCceEEEEcCC
Confidence            44444 899999997655443       4777777777764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=87.16  E-value=2.8  Score=29.81  Aligned_cols=55  Identities=16%  Similarity=0.160  Sum_probs=39.0

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+++-
T Consensus        57 ~v~~~~v~~~~~~~~~~~~~v~--------~~----Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~l  112 (115)
T 1thx_A           57 RLKVVKLEIDPNPTTVKKYKVE--------GV----PALRLV-KGEQILDSTEGV----ISKDKLLSFLDTHL  112 (115)
T ss_dssp             TCEEEEEESTTCHHHHHHTTCC--------SS----SEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHH
T ss_pred             cEEEEEEEcCCCHHHHHHcCCC--------ce----eEEEEE-cCCEEEEEecCC----CCHHHHHHHHHHHh
Confidence            4666444 35677899999984        33    488888 899988766532    35788888887653

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=87.12  E-value=2.5  Score=29.70  Aligned_cols=55  Identities=9%  Similarity=0.111  Sum_probs=38.9

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++.|--+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    .+.+++.+.|+.+.
T Consensus        50 ~~~~~~v~~~~~~~~~~~~~v~--------~~----Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~l  105 (109)
T 2yzu_A           50 KLLVAKLDVDENPKTAMRYRVM--------SI----PTVILF-KDGQPVEVLVGA----QPKRNYQAKIEKHL  105 (109)
T ss_dssp             TBEEEEEETTTCHHHHHHTTCC--------SS----SEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTTC
T ss_pred             ceEEEEEECCCCHhHHHhCCCC--------cC----CEEEEE-eCCcEeeeEeCC----CCHHHHHHHHHHHh
Confidence            4555444 36778999999985        34    478888 899988766532    35788888887654

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=86.46  E-value=0.88  Score=39.73  Aligned_cols=40  Identities=18%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC  222 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~  222 (276)
                      .|+.+|+.|+ -..||+|++..+.+.+..++   -.+.++.+-.
T Consensus       146 ~gk~~I~vFt-Dp~CPYCkkl~~~l~~~l~~---~~Vr~i~~Pi  185 (273)
T 3tdg_A          146 NKDKILYIVS-DPMCPHCQKELTKLRDHLKE---NTVRMVVVGW  185 (273)
T ss_dssp             GTTCEEEEEE-CTTCHHHHHHHHTHHHHHHH---CEEEEEECCC
T ss_pred             CCCeEEEEEE-CcCChhHHHHHHHHHHHhhC---CcEEEEEeec
Confidence            3678899999 99999999999999976653   4466666554

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=86.36  E-value=4.3  Score=28.47  Aligned_cols=54  Identities=15%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|--+ .|.+.++++.||+.        ++|    +++++ ++|++...+....    +.+++.+.|+++
T Consensus        51 ~~~~~~v~~~~~~~~~~~~~v~--------~~P----t~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  105 (107)
T 1dby_A           51 KLKCVKLNTDESPNVASEYGIR--------SIP----TIMVF-KGGKKCETIIGAV----PKATIVQTVEKY  105 (107)
T ss_dssp             TCEEEEEETTTCHHHHHHHTCC--------SSC----EEEEE-SSSSEEEEEESCC----CHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCHHHHHHCCCC--------cCC----EEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHH
Confidence            3555333 35677999999984        443    55554 7999987766332    467787777765

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=86.20  E-value=1.5  Score=31.42  Aligned_cols=44  Identities=23%  Similarity=0.457  Sum_probs=32.9

Q ss_pred             CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          27 QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        27 ~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+.++++.||+.        ++|    + |+++++|++...+.     |.+.+++.+.|+++
T Consensus        66 ~~~~~~~~~~v~--------~~P----t-~~~~~~G~~~~~~~-----G~~~~~l~~~l~~~  109 (111)
T 2pu9_C           66 ENKTLAKELGIR--------VVP----T-FKILKENSVVGEVT-----GAKYDKLLEAIQAA  109 (111)
T ss_dssp             TTHHHHHHHCCS--------BSS----E-EEEESSSSEEEEEE-----SSCHHHHHHHHHHH
T ss_pred             chHHHHHHcCCC--------eee----E-EEEEeCCcEEEEEc-----CCCHHHHHHHHHHh
Confidence            567999999974        443    4 88889999987665     33478888888765

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=85.67  E-value=1.8  Score=32.82  Aligned_cols=74  Identities=9%  Similarity=0.010  Sum_probs=42.0

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhccccc--C
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDT--K   94 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~--~   94 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++ .+|++...+...    ++.+++.+.|+.+-....  .
T Consensus        56 ~v~~~~vd~~~~~~l~~~~~v~--------~~----Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l~~~~~~~  118 (140)
T 3hz4_A           56 SAVFGRINIATNPWTAEKYGVQ--------GT----PTFKFF-CHGRPVWEQVGQ----IYPSILKNAVRDMLQHGEECI  118 (140)
T ss_dssp             TSEEEEEETTTCHHHHHHHTCC--------EE----SEEEEE-ETTEEEEEEESS----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCcCHhHHHHCCCC--------cC----CEEEEE-eCCcEEEEEcCC----CCHHHHHHHHHHHhcccccCc
Confidence            4665444 36778999999974        33    355555 799987766543    357888888876542222  2


Q ss_pred             CCCcCCCCCCCCce
Q psy1172          95 KVATPVDWKVGMEI  108 (276)
Q Consensus        95 ~~~~p~~w~~g~~~  108 (276)
                      ...+|.+|.-+..|
T Consensus       119 ~~~~~~~~~~~~~~  132 (140)
T 3hz4_A          119 RKSTPVGQDITGYV  132 (140)
T ss_dssp             HTSBC---------
T ss_pred             ccccccCccceeee
Confidence            36788888765544

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=85.57  E-value=1.2  Score=35.50  Aligned_cols=43  Identities=12%  Similarity=0.033  Sum_probs=32.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHH-HHHHHHHHhCCcEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARV-LQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l-~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .++++++.|| ...||+|..-.+.+ .++.+++. ..+.+..+..+
T Consensus        16 ~~~~~~ief~-d~~CP~C~~~~~~l~~~l~~~~~-~~v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVF-SYACPFCYKYDKAVTGPVSEKVK-DIVAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEE-CTTCHHHHHHHHHTHHHHHHHTT-TTCEEEEEECT
T ss_pred             CCCcEEEEEE-eCcCcchhhCcHHHHHHHHHhCC-CceEEEEEecC
Confidence            3567888899 79999999999888 77777664 34677666554

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=85.23  E-value=1.4  Score=32.10  Aligned_cols=46  Identities=22%  Similarity=0.353  Sum_probs=34.2

Q ss_pred             EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          25 ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        25 sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .|.+.++++.||+.        |+|     ||++-.+|++...+.     |++.+++.+.|+..
T Consensus        59 ~d~~~~l~~~~~V~--------~~P-----T~~~~~~G~~v~~~~-----G~~~~~l~~~i~k~  104 (105)
T 3zzx_A           59 VDECEDIAQDNQIA--------CMP-----TFLFMKNGQKLDSLS-----GANYDKLLELVEKN  104 (105)
T ss_dssp             TTTCHHHHHHTTCC--------BSS-----EEEEEETTEEEEEEE-----SCCHHHHHHHHHHH
T ss_pred             cccCHHHHHHcCCC--------eec-----EEEEEECCEEEEEEe-----CcCHHHHHHHHHhc
Confidence            46788999999985        443     455558999877665     57889988888653

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=84.96  E-value=3  Score=30.45  Aligned_cols=54  Identities=17%  Similarity=0.253  Sum_probs=37.1

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+.+
T Consensus        63 ~v~~~~vd~d~~~~l~~~~~v~--------~~----Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  117 (119)
T 1w4v_A           63 KVVMAKVDIDDHTDLAIEYEVS--------AV----PTVLAM-KNGDVVDKFVGI----KDEDQLEAFLKKL  117 (119)
T ss_dssp             SSEEEEEETTTTHHHHHHTTCC--------SS----SEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCHHHHHHcCCC--------cc----cEEEEE-eCCcEEEEEcCC----CCHHHHHHHHHHH
Confidence            4555333 35677899999985        44    377777 899987766532    3578888888764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=84.63  E-value=3.4  Score=28.99  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=38.4

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+.+
T Consensus        53 ~~~~~~v~~~~~~~~~~~~~i~--------~~----Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~  107 (109)
T 3tco_A           53 KAVFGRLNVDENQKIADKYSVL--------NI----PTTLIF-VNGQLVDSLVGA----VDEDTLESTVNKY  107 (109)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC--------SS----SEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             CceEEEEccccCHHHHHhcCcc--------cC----CEEEEE-cCCcEEEeeecc----CCHHHHHHHHHHH
Confidence            4555333 45778999999985        44    478888 899988776533    3578888888764

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=84.56  E-value=2.5  Score=34.07  Aligned_cols=51  Identities=16%  Similarity=0.193  Sum_probs=35.0

Q ss_pred             eCccHHHHHh--------CCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCC----CCHHHHHHHHHhh
Q psy1172          26 DQDRSLAVQL--------GMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTG----RNFDEILRVLDSL   88 (276)
Q Consensus        26 D~~~~va~~y--------G~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~----r~~~eilr~l~~l   88 (276)
                      |....+++.|        |+-        |+    ++++++||+|++.+...|-...+    ..+.++|+.+..+
T Consensus        83 de~~~l~~~y~~~~q~~~gv~--------g~----Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~  145 (173)
T 3ira_A           83 EERPDIDNIYMTVCQIILGRG--------GW----PLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEI  145 (173)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCC--------CS----SEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHHHHcCCC--------CC----cceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHH
Confidence            3456888888        653        55    49999999999998765532222    2577777777543

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=84.52  E-value=4.9  Score=27.99  Aligned_cols=54  Identities=13%  Similarity=0.145  Sum_probs=37.0

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    +++++++ +|++...+..    .++.+++.+.|+.+
T Consensus        51 ~~~~~~v~~~~~~~~~~~~~v~--------~~----Pt~~~~~-~G~~~~~~~g----~~~~~~l~~~l~~~  105 (106)
T 3die_A           51 KADILKLDVDENPSTAAKYEVM--------SI----PTLIVFK-DGQPVDKVVG----FQPKENLAEVLDKH  105 (106)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC--------SB----SEEEEEE-TTEEEEEEES----CCCHHHHHHHHHTT
T ss_pred             CcEEEEEECCcCHHHHHhCCCc--------cc----CEEEEEe-CCeEEEEEeC----CCCHHHHHHHHHHh
Confidence            3665333 36788999999984        44    4677775 9988776653    34578888888654

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=84.07  E-value=1.8  Score=32.03  Aligned_cols=32  Identities=13%  Similarity=0.114  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      |+.|. .+|||+|.+-..-|.+       .|+..-.+.+|
T Consensus        19 v~vy~-~~~Cp~C~~ak~~L~~-------~~i~~~~~dvd   50 (114)
T 3h8q_A           19 VVIFS-KSYCPHSTRVKELFSS-------LGVECNVLELD   50 (114)
T ss_dssp             EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETT
T ss_pred             EEEEE-cCCCCcHHHHHHHHHH-------cCCCcEEEEec
Confidence            33466 8999999977666654       45555555555

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=83.61  E-value=1.1  Score=35.31  Aligned_cols=45  Identities=18%  Similarity=0.098  Sum_probs=33.3

Q ss_pred             ecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEE
Q psy1172         174 LECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIAL  220 (276)
Q Consensus       174 l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~V  220 (276)
                      |...-.++++|+-|+ .--||+|.+-.+.+.++.+++.+. +.++-+
T Consensus        15 l~~p~~~~~~vvEf~-dy~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~   59 (184)
T 4dvc_A           15 LKTPASSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPEG-AKFQKN   59 (184)
T ss_dssp             CSSCCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTT-CEEEEE
T ss_pred             CCCCCCCCCEEEEEE-CCCCHhHHHHhHHHHHHHhhcCCc-eEEEEE
Confidence            343345788999999 899999999888888888877543 444443

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=82.64  E-value=6  Score=27.19  Aligned_cols=53  Identities=13%  Similarity=0.236  Sum_probs=36.8

Q ss_pred             CCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          19 LPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        19 l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      +.|-.+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+.+
T Consensus        48 ~~~~~v~~~~~~~~~~~~~v~--------~~----Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~  101 (104)
T 2e0q_A           48 VGFGKLNSDENPDIAARYGVM--------SL----PTVIFF-KDGEPVDEIIGA----VPREEIEIRIKNL  101 (104)
T ss_dssp             SEEEEEETTTCHHHHHHTTCC--------SS----CEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCHHHHHhCCcc--------cc----CEEEEE-ECCeEhhhccCC----CCHHHHHHHHHHH
Confidence            555433 36778999999974        33    477777 899988766532    3578888887765

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=82.57  E-value=5.4  Score=28.25  Aligned_cols=54  Identities=15%  Similarity=0.313  Sum_probs=35.9

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+ .|.+.++++.||+.        ++|    + |++.++|++...+...    ++.+++.+.|+++
T Consensus        55 ~~~~~~v~~~~~~~~~~~~~v~--------~~P----t-~~~~~~G~~~~~~~G~----~~~~~l~~~l~~~  109 (112)
T 1t00_A           55 KIEIVKLNIDENPGTAAKYGVM--------SIP----T-LNVYQGGEVAKTIVGA----KPKAAIVRDLEDF  109 (112)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC--------SSS----E-EEEEETTEEEEEEESC----CCHHHHHHHTHHH
T ss_pred             CeEEEEEEcCCCHHHHHhCCCC--------ccc----E-EEEEeCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence            4555333 36678999999984        443    4 4445899998766533    3477888877764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=82.33  E-value=4.7  Score=28.56  Aligned_cols=53  Identities=17%  Similarity=0.259  Sum_probs=35.9

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+ .|.+.++++.||+.        ++|    + |++.++|++...+.     |.+.+++.+.|+++
T Consensus        56 ~~~~~~vd~~~~~~~~~~~~v~--------~~P----t-~~~~~~G~~~~~~~-----G~~~~~l~~~l~~~  109 (112)
T 1ep7_A           56 KVIFLKVDVDAVAAVAEAAGIT--------AMP----T-FHVYKDGVKADDLV-----GASQDKLKALVAKH  109 (112)
T ss_dssp             TSEEEEEETTTTHHHHHHHTCC--------BSS----E-EEEEETTEEEEEEE-----SCCHHHHHHHHHHH
T ss_pred             CeEEEEEECCchHHHHHHcCCC--------ccc----E-EEEEECCeEEEEEc-----CCCHHHHHHHHHHH
Confidence            4555333 35677999999984        443    4 55668999887665     33578888887765

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=81.02  E-value=3.8  Score=28.32  Aligned_cols=43  Identities=9%  Similarity=-0.015  Sum_probs=25.9

Q ss_pred             EEEEcCC----CCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC------ChHHHHHHHHHH
Q psy1172         185 LFSHPSD----FTPVCTTELARVLQLIKEFEQRTCKVIALSCD------SVESHHDWIKAL  235 (276)
Q Consensus       185 L~f~pa~----~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D------~~~~~~~~~~~~  235 (276)
                      +.|. .+    +||.|.+-..-|+       ++|+..-.+.++      +++..+++.+..
T Consensus         3 ~iY~-~~~~~~~Cp~C~~ak~~L~-------~~gi~y~~idI~~~~~~~~~~~~~~l~~~~   55 (87)
T 1aba_A            3 KVYG-YDSNIHKCGPCDNAKRLLT-------VKKQPFEFINIMPEKGVFDDEKIAELLTKL   55 (87)
T ss_dssp             EEEE-CCTTTSCCHHHHHHHHHHH-------HTTCCEEEEESCSBTTBCCHHHHHHHHHHH
T ss_pred             EEEE-eCCCCCcCccHHHHHHHHH-------HcCCCEEEEEeeccccccCHHHHHHHHHHh
Confidence            3444 78    9999987655554       356666666665      344444444444

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=80.97  E-value=1.1  Score=35.23  Aligned_cols=35  Identities=9%  Similarity=0.085  Sum_probs=25.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEE
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIAL  220 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~V  220 (276)
                      .++.+|+.|. ..+||+|++-.+.|.++      .++.|+-+
T Consensus        13 ~a~~~vv~f~-D~~Cp~C~~~~~~l~~l------~~v~v~~~   47 (147)
T 3gv1_A           13 NGKLKVAVFS-DPDCPFCKRLEHEFEKM------TDVTVYSF   47 (147)
T ss_dssp             TCCEEEEEEE-CTTCHHHHHHHHHHTTC------CSEEEEEE
T ss_pred             CCCEEEEEEE-CCCChhHHHHHHHHhhc------CceEEEEE
Confidence            4677788888 99999999988887653      34655543

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=80.89  E-value=2.8  Score=30.58  Aligned_cols=53  Identities=19%  Similarity=0.414  Sum_probs=36.3

Q ss_pred             CCceEEE-e-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          19 LPYPIIA-D-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        19 l~fplls-D-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      +.|--+. | .+.++++.||+.        ++|     ||+++++|++...+.     |.+.+++.+.|+++.
T Consensus        69 ~~~~~vd~~~~~~~~~~~~~v~--------~~P-----t~~~~~~G~~~~~~~-----G~~~~~l~~~i~~~~  123 (124)
T 1faa_A           69 VIFLKLDCNQENKTLAKELGIR--------VVP-----TFKILKENSVVGEVT-----GAKYDKLLEAIQAAR  123 (124)
T ss_dssp             SEEEEEECSSTTHHHHHHHCCS--------SSS-----EEEEEETTEEEEEEE-----SSCHHHHHHHHHHHT
T ss_pred             CEEEEEecCcchHHHHHHcCCC--------eee-----EEEEEeCCcEEEEEc-----CCCHHHHHHHHHHhh
Confidence            5553332 3 567899999984        443     477779999887665     334788888887653

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=80.62  E-value=8.3  Score=26.66  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CCCceE-EEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPI-IADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpl-lsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-. -.|.+.++++.||+.        ++|    ++ ++.++|++...+....    +.+++.+.|+++
T Consensus        50 ~~~~~~v~~~~~~~~~~~~~v~--------~~P----t~-~~~~~g~~~~~~~G~~----~~~~l~~~l~~~  104 (105)
T 1fb6_A           50 KIAVYKLNTDEAPGIATQYNIR--------SIP----TV-LFFKNGERKESIIGAV----PKSTLTDSIEKY  104 (105)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC--------SSS----EE-EEEETTEEEEEEEECC----CHHHHHHHHHHH
T ss_pred             ceEEEEEcCcchHHHHHhCCCC--------ccc----EE-EEEeCCeEEEEEecCC----CHHHHHHHHHhh
Confidence            355433 335677899999974        443    44 4447999987766433    467777777654

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=80.54  E-value=2.2  Score=31.88  Aligned_cols=54  Identities=17%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-.+ .|.+.++++.||+.        ++    ++++++ ++|++...+...    ++.+++.+.|+++
T Consensus        72 ~v~~~~vd~~~~~~l~~~~~v~--------~~----Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~  126 (128)
T 2o8v_B           72 KLTVAKLNIDQNPGTAPKYGIR--------GI----PTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN  126 (128)
T ss_dssp             TEEEEEEETTTCCTTSGGGTCC--------SS----SEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCHHHHHHcCCC--------cc----CEEEEE-eCCEEEEEEcCC----CCHHHHHHHHHHh
Confidence            3554333 35677888888874        44    488888 899988766532    3578888888764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=80.11  E-value=3.9  Score=29.32  Aligned_cols=52  Identities=13%  Similarity=0.138  Sum_probs=36.4

Q ss_pred             CCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          19 LPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        19 l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      +.|- +=.|.+.++++.||+.        ++    +++++++ +|++...+.     |.+.+++.+.|+++
T Consensus        56 ~~~~~vd~~~~~~l~~~~~v~--------~~----Pt~~~~~-~G~~~~~~~-----G~~~~~l~~~i~~~  108 (109)
T 3f3q_A           56 ADFYKLDVDELGDVAQKNEVS--------AM----PTLLLFK-NGKEVAKVV-----GANPAAIKQAIAAN  108 (109)
T ss_dssp             SEEEEEETTTCHHHHHHTTCC--------SS----SEEEEEE-TTEEEEEEE-----SSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHcCCC--------cc----CEEEEEE-CCEEEEEEe-----CCCHHHHHHHHHhh
Confidence            5553 3356778999999985        44    4777777 998877665     33567888777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1xcca_	219	c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe	3e-23
d1xcca_	219	c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe	3e-08
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	6e-23
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	1e-07
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	2e-21
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	8e-07
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	6e-21
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	2e-06
d1zofa1	170	c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He	2e-17
d1zofa1	170	c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He	4e-06
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	3e-17
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	2e-09
d2h01a1	170	c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio	7e-17
d2h01a1	170	c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio	1e-06
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	4e-16
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	3e-10
d1e2ya_	167	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	6e-16
d1we0a1	166	c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase	4e-14
d1we0a1	166	c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase	3e-05
d1n8ja_	186	c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC	8e-13
d1n8ja_	186	c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC	1e-06
d2bmxa1	169	c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase	1e-11
d2cx4a1	160	c.47.1.10 (A:4-163) Bacterioferritin comigratory p	2e-07
d1psqa_	163	c.47.1.10 (A:) Probable thiol peroxidase PsaD {Str	2e-07
d1hd2a_	161	c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien	1e-06
d1xvwa1	153	c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c	1e-06
d1q98a_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i	2e-06
d1s0ua1	118	b.43.3.1 (A:230-347) Initiation factor eIF2 gamma	6e-05
d1qxha_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c	7e-05
d2qn6a1	114	b.43.3.1 (A:207-320) Initiation factor eIF2 gamma	2e-04
d1xvqa_	166	c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium	2e-04

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 92.2 bits (228), Expect = 3e-23
 Identities = 56/108 (51%), Positives = 69/108 (63%), Gaps = 2/108 (1%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
              K   PI+ D+ R LA +L ++D  EKD  G+PLTCR +F I P KK++ + LYPATT
Sbjct: 90  KLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATT 149

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGK 122
           GRN  EILRVL SLQLT T  VATPV+W  G +  V P L  +D E  
Sbjct: 150 GRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTL--QDDEIS 195

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
           W ILFSHP+DFTPVCTTELA + ++ ++F +  CK+I  SC+S ESH  WI+
Sbjct: 32  WAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIE 83

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 6e-23
 Identities = 67/109 (61%), Positives = 82/109 (75%)

Query: 12  CGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP 71
             E   KLP+PII D++R LA+ LGMLDP EKD KGMP+T R VF+  P KKL+LS LYP
Sbjct: 87  SEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYP 146

Query: 72  ATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
           ATTGRNFDEILRV+ SLQLT  K+VATPVDWK G  + V P +  ++++
Sbjct: 147 ATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK 195

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 36/69 (52%), Positives = 40/69 (57%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           WGILFSHP DFTPVCTTEL R  +L  EF +R  K+IALS DSVE H  W K +      
Sbjct: 29  WGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSE 88

Query: 242 GLLINLSVD 250
                L   
Sbjct: 89  EPTEKLPFP 97

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 87.1 bits (215), Expect = 2e-21
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 17  GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR 76
           G++  PI+AD+ + +    G+L   +       +  R +FIIDP + LR   +     GR
Sbjct: 95  GQMNIPILADKTKCIMKSYGVLKEEDG------VAYRGLFIIDPKQNLRQITVNDLPVGR 148

Query: 77  NFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           + DE LR++ + Q  +      P +WK G +
Sbjct: 149 DVDEALRLVKAFQFVEKHGEVCPANWKPGDK 179

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 46.3 bits (109), Expect = 8e-07
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           W +LF +P DFT VC TE+ +    +KEF    C+V+A S DS  SH  W     +   L
Sbjct: 35  WLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGL 94

Query: 242 GLLINLSVDD-----------FKEVEGRSRR 261
           G +    + D            KE +G + R
Sbjct: 95  GQMNIPILADKTKCIMKSYGVLKEEDGVAYR 125

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 6e-21
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 15  GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
           G G L  P++AD  R L+   G+L   E       +  R +FIID    LR   +     
Sbjct: 94  GLGPLNIPLLADVTRRLSEDYGVLKTDEG------IAYRGLFIIDGKGVLRQITVNDLPV 147

Query: 75  GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
           GR+ DE LR++ + Q TD      P  WK G +
Sbjct: 148 GRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSD 180

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + +LF +P DFT VC TE+       ++F +  C+V+ +S DS  +H  WI    ++  L
Sbjct: 36  YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGL 95

Query: 242 G 242
           G
Sbjct: 96  G 96

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

 Score = 75.3 bits (184), Expect = 2e-17
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 17  GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR 76
           G++ +P++AD  +S++    +L           +  R  F+ID   K+R + +     GR
Sbjct: 95  GQVSFPMVADITKSISRDYDVLFE-------EAIALRGAFLIDKNMKVRHAVINDLPLGR 147

Query: 77  NFDEILRVLDSLQLTDTKKVATP 99
           N DE+LR++D+L   +      P
Sbjct: 148 NADEMLRMVDALLHFEEHGEVCP 170

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
             ILF  P DFT VC TE+    + +K+F ++   VI +S DS + H  W    V    +
Sbjct: 35  GVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGI 94

Query: 242 GLLINLSVDDFK 253
           G +    V D  
Sbjct: 95  GQVSFPMVADIT 106

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score = 76.8 bits (188), Expect = 3e-17
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 1   MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDP 60
           +F               ++P+PIIAD   ++A +LG+L            T R VFI+D 
Sbjct: 74  VFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAES-----ATHTVRGVFIVDA 128

Query: 61  AKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
              +R    YP   GR  DEILR++ +L+L D+ K A P DW   
Sbjct: 129 RGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNN 173

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 28/74 (37%), Positives = 41/74 (55%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           W +LFSHP+DFTPVCTTE     +  ++F++    +I LS DSV SH  W + + R   +
Sbjct: 31  WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV 90

Query: 242 GLLINLSVDDFKEV 255
            +   +  D    V
Sbjct: 91  RIPFPIIADPQGTV 104

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 74.1 bits (181), Expect = 7e-17
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
            G G + + +I+D  +S+A    +L           +  RA  +ID    ++   +    
Sbjct: 86  GGIGNIKHTLISDISKSIARSYDVLFN-------ESVALRAFVLIDKQGVVQHLLVNNLA 138

Query: 74  TGRNFDEILRVLDSLQLTDTKKVATPVDWKVG 105
            GR+ DEILR++D+LQ  +      P +W+ G
Sbjct: 139 LGRSVDEILRLIDALQHHEKYGDVCPANWQKG 170

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           + +L+ +P DFT VC +E+  + + +  F++R  +++  S DS  +H  W
Sbjct: 29  YVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAW 78

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.8 bits (175), Expect = 4e-16
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 17  GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR 76
           G +   +++D  + ++   G+        +G  L  R +FIIDP   ++   +     GR
Sbjct: 88  GHMNIALLSDLTKQISRDYGV------LLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGR 141

Query: 77  NFDEILRVLDSLQLTD 92
           + +E LR++ + Q  +
Sbjct: 142 SVEETLRLVKAFQFVE 157

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 27/95 (28%), Positives = 41/95 (43%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
           + +LF +P DFT VC TE+        EF    C+V+A+S DS  SH  WI    ++  L
Sbjct: 28  YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGL 87

Query: 242 GLLINLSVDDFKEVEGRSRRFQESLNTYGYLGTYV 276
           G +    + D  +   R              G ++
Sbjct: 88  GHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI 122

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

 Score = 71.5 bits (174), Expect = 6e-16
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 20  PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFD 79
             P++AD+ +++A   G+LD          +  R VFIIDP  KLR   +     GRN +
Sbjct: 98  AIPMLADKTKAIARAYGVLDE------DSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVE 151

Query: 80  EILRVLDSLQLTD 92
           E++R++++LQ  +
Sbjct: 152 EVIRLVEALQFVE 164

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

 Score = 66.5 bits (161), Expect = 4e-14
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 20  PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFD 79
            Y +I D  ++++ Q  +L+          L  R  FIIDP   ++   +     GR+  
Sbjct: 93  EYIMIGDPSQTISRQFDVLNE------ETGLADRGTFIIDPDGVIQAIEINADGIGRDAS 146

Query: 80  EILRVLDSLQLTDTK 94
            ++  + + Q     
Sbjct: 147 TLINKVKAAQYVREN 161

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W I+  +P+DF+ VC TEL  V +   E ++   +V ++S D+   H  W
Sbjct: 33  WSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAW 82

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 63.3 bits (153), Expect = 8e-13
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 20  PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFD 79
            Y +I D   +L      +   E          RA F++DP   ++   +     GR+  
Sbjct: 92  KYAMIGDPTGALTRNFDNMREDEGL------ADRATFVVDPQGIIQAIEVTAEGIGRDAS 145

Query: 80  EILRVLDSLQLTDT-KKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123
           ++LR + + Q          P  WK G    + P L   D  GK+
Sbjct: 146 DLLRKIKAAQYVAAHPGEVCPAKWKEGEAT-LAPSL---DLVGKI 186

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
           W + F +P+DFT V  TEL  V    +E ++    V ++S D+  +H  W
Sbjct: 32  WSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 81

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 17  GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR 76
             LP+P+++D  R L+   G+L+       G+    R  FI+DP  +++       + GR
Sbjct: 103 KTLPFPMLSDIKRELSQAAGVLNA-----DGVA--DRVTFIVDPNNEIQFVSATAGSVGR 155

Query: 77  NFDEILRVLDSLQ 89
           N DE+LRVLD+LQ
Sbjct: 156 NVDEVLRVLDALQ 168

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 17  GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR 76
            +L + +++D +R +     +     K  K +    RAVFI+ P   +   ++       
Sbjct: 85  NRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAK--RAVFIVKPDGTVAYKWVTDNPLNE 142

Query: 77  -NFDEILRVLDSLQ 89
            ++DE++R  + + 
Sbjct: 143 PDYDEVVREANKIA 156

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 46  KGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSL 88
               L  RAVF++D    +R         +  NF+  +    +L
Sbjct: 120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 8/85 (9%), Positives = 23/85 (27%)

Query: 4   QDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKK 63
               +         +    ++AD   +   +  +L      S       +   ++     
Sbjct: 77  DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGI 136

Query: 64  LRLSFLYPATTGRNFDEILRVLDSL 88
           ++   + P  TG        ++  L
Sbjct: 137 VKALNVEPDGTGLTCSLAPNIISQL 161

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 52  CRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89
            R  F++D +  +R + +      R+       L +L 
Sbjct: 115 NRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 152

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 12  CGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP 71
           CG    +    +   ++ +L  QLG+     +      LT RAV ++D    +  S L  
Sbjct: 92  CGAEGIENAKTVSTFRNHALHSQLGVD---IQTGPLAGLTSRAVIVLDEQNNVLHSQLVE 148

Query: 72  ATTGR-NFDEILRVL 85
                 N++  L VL
Sbjct: 149 EIKEEPNYEAALAVL 163

>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 118

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KVG EIE+RPG+   +   K   KP+ ++IVSL A    L+ A PGGLI
Sbjct: 42  KVGDEIEIRPGIKVTE-GNKTFWKPLTTKIVSLAAGNTILRKAHPGGLI 89

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 12  CGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP 71
           CG         +   ++       G+      D     L  RAV +ID    +  S L  
Sbjct: 94  CGAEGLNNVITLSTFRNAEFLQAYGVAI---ADGPLKGLAARAVVVIDENDNVIFSQLVD 150

Query: 72  -ATTGRNFDEILRV 84
             TT  +++  L V
Sbjct: 151 EITTEPDYEAALAV 164

>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} Length = 114

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLI 151
           KV  EI+V PGL  +  +GK++ +PIF++I S+     E + A PGGL+
Sbjct: 42  KVDQEIKVLPGLRVE-KQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLV 89

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 4/76 (5%)

Query: 14  EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-A 72
             +G       +    S     G+       +       RA+ +I     +  + L P  
Sbjct: 93  GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGL---LARAIVVIGADGNVAYTELVPEI 149

Query: 73  TTGRNFDEILRVLDSL 88
               N++  L  L + 
Sbjct: 150 AQEPNYEAALAALGAT 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	100.0
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	100.0
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	100.0
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.95
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.94
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.94
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.93
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.92
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.91
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.91
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.91
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.91
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.9
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.9
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.9
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.9
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.9
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.9
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.9
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.9
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.89
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.87
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.87
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.87
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.85
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.85
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.84
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.81
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.81
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.8
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.76
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.76
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.74
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.74
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.73
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.71
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.71
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.7
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.67
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.63
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.63
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.62
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.6
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.59
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.58
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.56
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	99.53
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.46
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.35
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.3
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.12
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.11
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.96
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	98.93
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	98.82
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.8
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.75
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	98.63
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	98.6
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.58
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.57
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.52
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.51
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.45
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	98.41
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.33
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.3
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.28
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.27
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.19
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.12
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.11
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.08
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.08
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.07
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.07
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.05
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.04
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.03
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.03
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.03
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.93
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.92
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	97.92
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	97.92
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	97.87
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.85
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.83
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	97.82
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.79
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.77
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.72
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.7
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	97.69
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.66
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.62
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.58
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.54
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.53
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	97.43
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	96.82
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.8
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.75
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	96.73
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	95.72
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	95.63
d1wjka_	100	Thioredoxin-like structure containing protein C330	94.97
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.69
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	91.04
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	88.96
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	86.12
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	84.5
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	83.91
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	83.22
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	82.92
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	82.38
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	82.06
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	81.04
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	80.52

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=1.8e-35  Score=253.29  Aligned_cols=120  Identities=48%  Similarity=0.768  Sum_probs=112.0

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|++++++..|    .++++||||||++++|+++|||+++...+..|..++.|+||||||+|+||+++.|++++|||++|
T Consensus        80 ~w~~~~~~~~~----~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~E  155 (219)
T d1xcca_          80 KWIEDIKYYGK----LNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHE  155 (219)
T ss_dssp             HHHHHHHHHHT----CSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred             HHhhhhHhhcc----cCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHH
Confidence            48999998887    37899999999999999999999887665566777899999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCC
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLT  124 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~  124 (276)
                      |||+|++||++++|+++|||||+|||+||++|+++.|+|+++|+
T Consensus       156 iLr~l~aLQ~~~~~~~~~PanW~~G~~~~~~p~~~~~~~~~~~~  199 (219)
T d1xcca_         156 ILRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKHFK  199 (219)
T ss_dssp             HHHHHHHHHHHHHSSEEBCTTCCTTSCEEECTTCCGGGHHHHCS
T ss_pred             HHHHHHHHHHHHhCCCCcCCCCCCCCceeeCCCCChHHHHHHcc
Confidence            99999999999999999999999999999999999999998875

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=248.83  Aligned_cols=123  Identities=58%  Similarity=0.939  Sum_probs=112.0

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|.+++++..+ +....+++||||+|++++||++|||+.+......|..++.|+||||||+|+||++++||+++|||++|
T Consensus        77 ~~~~~~~~~~~-~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dE  155 (220)
T d1prxa_          77 AWSKDINAYNS-EEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDE  155 (220)
T ss_dssp             HHHHHHHHHTT-SCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHH
T ss_pred             hhhhhhhhccc-cccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHH
Confidence            47777876554 33457899999999999999999999887765566667899999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCC
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLT  124 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~  124 (276)
                      |||+|++||.+++++++|||||+|||+||++|++++|+|+++|+
T Consensus       156 iLr~l~alq~~~~~~~~~PanW~pGd~~~~~p~~~~~~~~~~~~  199 (220)
T d1prxa_         156 ILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFP  199 (220)
T ss_dssp             HHHHHHHHHHHHHHCEEBCTTCCTTSCEEECTTSCHHHHHHHCT
T ss_pred             HHHHHHHHhhhhcCCcCcCCCCCCCCceecCCCCCHHHHHHhcc
Confidence            99999999999999999999999999999999999999999985

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=3.4e-34  Score=248.07  Aligned_cols=125  Identities=30%  Similarity=0.501  Sum_probs=111.7

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|.++++...+     .+++||||+|++++||++|||+++..    + ..+.|+||||||+|+||+++.|++++|||++|
T Consensus        79 ~w~~~~~~~~~-----~~l~fpllsD~~~~vak~yGv~~~~~----~-~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dE  148 (237)
T d2zcta1          79 KWKEWIERHIG-----VRIPFPIIADPQGTVARRLGLLHAES----A-THTVRGVFIVDARGVIRTMLYYPMELGRLVDE  148 (237)
T ss_dssp             HHHHHHHHHHC-----CCCCSCEEECGGGHHHHHTTCC--------C-CTTCCEEEEECTTSBEEEEEECCTTBCCCHHH
T ss_pred             HHhhhhhhhcc-----cccccccccCcchHHHHHcCCccccc----c-ccceeeeEEECCCCEEEEEEEeCCCCCCCHHH
Confidence            48888888777     89999999999999999999987653    2 23789999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCC----CCceeeCCCCCchhhhccC-----CCCCceeeeeec
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKV----GMEIEVRPGLVSKDSEGKL-----TCKPIFSRIVSL  135 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~----g~~~~~~p~~~~~~~~~~~-----~~~~w~~~~~~~  135 (276)
                      |||+|++||++++++++|||||+|    ||+||++|+++.|||+++|     .|+.|||+....
T Consensus       149 iLr~l~aLQ~~~~~~~~~Pa~W~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (237)
T d2zcta1         149 ILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPPTTEDQARARMESGQYRSLDWWFCWDTP  212 (237)
T ss_dssp             HHHHHHHHHHHHHHTCBBCTTTTSBTTTBTCEECCCCCSHHHHHHHHHHTCSEEEETTEEEECC
T ss_pred             HHHHHHHHhhhccCCcCCcCCCCCCCCCCCCEEeCCCCCHHHHHHhccCCCeeeeeeeeeeccC
Confidence            999999999999999999999999    9999999999999999886     578999988643

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.5e-29  Score=208.51  Aligned_cols=110  Identities=31%  Similarity=0.503  Sum_probs=95.9

Q ss_pred             CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172           1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE   80 (276)
Q Consensus         1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e   80 (276)
                      +|.+++++..|    ..+++||||+|++++|+++|||+++..    |+  +.|+||||||+|+||+++.|++.+|||++|
T Consensus        84 ~~~~~~~~~~~----~~~~~fpll~D~~~~va~~ygv~~~~~----g~--~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E  153 (197)
T d1qmva_          84 AWINTPRKEGG----LGPLNIPLLADVTRRLSEDYGVLKTDE----GI--AYRGLFIIDGKGVLRQITVNDLPVGRSVDE  153 (197)
T ss_dssp             HHHTSCGGGTC----CCSCSSCEEECTTCHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred             hhhcchhhhcC----cCCCccceEeccchHHHHHhCCCcccC----Ce--eeEEEEEECCCCcEEEEEecCCCcccCHHH
Confidence            47777776666    368999999999999999999997754    54  689999999999999999999999999999


Q ss_pred             HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccC
Q psy1172          81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL  123 (276)
Q Consensus        81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~  123 (276)
                      +||.|++||.+++++++||+||+||+++|. |+  .+++++.|
T Consensus       154 ~lr~l~alq~~~~~g~~cp~~W~pG~~~~~-p~--~~~~~~~~  193 (197)
T d1qmva_         154 ALRLVQAFQYTDEHGEVCPAGWKPGSDTIK-PN--VDDSKEYF  193 (197)
T ss_dssp             HHHHHHHHHHHHHHCCBBCTTCCTTSCCBC-SS--HHHHHHHH
T ss_pred             HHHHHHhhccccccCcCcCCCCCCCCcccc-CC--HHHHHHhh
Confidence            999999999999999999999999999974 43  46665543

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.94  E-value=2.5e-28  Score=205.48  Aligned_cols=102  Identities=26%  Similarity=0.498  Sum_probs=91.4

Q ss_pred             chhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHH
Q psy1172           2 FLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEI   81 (276)
Q Consensus         2 w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~ei   81 (276)
                      |.+..++..+    ..+++||||+|++++|+++|||+++..    |+  +.|+||||||+|+||+++.|++.++||++|+
T Consensus        84 ~~~~~~~~~~----~~~l~fpllsD~~~~v~~~ygv~~~~~----~~--~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~  153 (194)
T d1uula_          84 WTSIERKRGG----LGQMNIPILADKTKCIMKSYGVLKEED----GV--AYRGLFIIDPKQNLRQITVNDLPVGRDVDEA  153 (194)
T ss_dssp             HHHSCGGGTC----CCSCSSCEEECTTCHHHHHHTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred             hhhhhhhhcc----ccCCCcceeeCCcchHHHHcCCeeccC----Cc--eEEEEEEECCCCeEEEEEEecCCCCcCHHHH
Confidence            5565555554    368999999999999999999987654    44  6899999999999999999999999999999


Q ss_pred             HHHHHhhcccccCCCCcCCCCCCCCceeeCCC
Q psy1172          82 LRVLDSLQLTDTKKVATPVDWKVGMEIEVRPG  113 (276)
Q Consensus        82 lr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~  113 (276)
                      ||+|++||++++++++|||||+||++||+|++
T Consensus       154 Lr~l~alQ~~~~~~~~cp~~W~~g~~~~~p~~  185 (194)
T d1uula_         154 LRLVKAFQFVEKHGEVCPANWKPGDKTMKPDP  185 (194)
T ss_dssp             HHHHHHHHHHHHHSCBBCTTCCTTSCCBCSST
T ss_pred             HHHHHHhhhHhhcCCCcCCCCCCCCccccCCH
Confidence            99999999999999999999999999998754

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=1.1e-27  Score=200.25  Aligned_cols=88  Identities=24%  Similarity=0.440  Sum_probs=82.0

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccC-C
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTK-K   95 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~-~   95 (276)
                      .+++||||+|++++++++|||+.+..    |+  +.|+||||||+|+||+++.|++.++||++|+||+|++||++++| +
T Consensus        89 ~~~~fpllsD~~~~v~~~yGv~~~~~----g~--~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ~~~~~~g  162 (186)
T d1n8ja_          89 AKIKYAMIGDPTGALTRNFDNMREDE----GL--ADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPG  162 (186)
T ss_dssp             GGCCSEEEECTTSHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHSTT
T ss_pred             ccccccccccHHHHHHHHhCCCcccC----Cc--ceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHHHHHhcCC
Confidence            45999999999999999999987654    54  67999999999999999999999999999999999999999998 7


Q ss_pred             CCcCCCCCCCCceee
Q psy1172          96 VATPVDWKVGMEIEV  110 (276)
Q Consensus        96 ~~~p~~w~~g~~~~~  110 (276)
                      ++|||||+||+++|+
T Consensus       163 ~~~p~~W~~g~~~~~  177 (186)
T d1n8ja_         163 EVCPAKWKEGEATLA  177 (186)
T ss_dssp             CBBCTTCCTTSCCBC
T ss_pred             eEeCCCCCCCCceec
Confidence            999999999999975

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.93  E-value=3.5e-26  Score=187.75  Aligned_cols=117  Identities=21%  Similarity=0.268  Sum_probs=100.8

Q ss_pred             cccCCCCCcEEecC----CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         154 FAAALLPGCSLLGC----QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       154 ~~G~~aPdF~L~~~----~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      .+|++||+|+|++.    ++++++|+ +|+||++||+|||++|||+|+.|+++|++.+++|+++|++|++||+|++++++
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vsls-d~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~   80 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEA-DLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHK   80 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETT-TTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHH-HhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHH
Confidence            47999999999974    33578999 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV  276 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v  276 (276)
                      +|.+++....  +++||+++|+++.   ++++||+..+..++  .++||
T Consensus        81 ~~~~~~~~~~--~~~fpll~D~~~~---v~~~ygv~~~~~~~~~r~tfv  124 (166)
T d1we0a1          81 AWHENSPAVG--SIEYIMIGDPSQT---ISRQFDVLNEETGLADRGTFI  124 (166)
T ss_dssp             HHHHSCHHHH--TCCSEEEECTTCH---HHHHTTCEETTTTEECEEEEE
T ss_pred             HHhhhhhhhc--ccccccccCcccH---HHHHhCCCccccCcccceEEE
Confidence            9988764332  6789999998764   78999998766543  35553

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.92  E-value=1e-25  Score=189.32  Aligned_cols=118  Identities=28%  Similarity=0.365  Sum_probs=103.7

Q ss_pred             ccCCCCCcE----EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         155 AAALLPGCS----LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       155 ~G~~aPdF~----L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      .|.+||||+    |+|.+|++++|+ +|+||++||+|||++|||+|..|++.|++++++|+++|++|++||.|+.+++++
T Consensus         5 ~~~PAPdFtl~a~l~d~~g~~vsLs-d~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~   83 (194)
T d1uula_           5 DLHPAPDFNETALMPNGTFKKVALT-SYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLA   83 (194)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGG-GGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             cCCCCCCCcccccccCCCCcEEehH-HhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhh
Confidence            578999999    456788899999 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172         231 WIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV  276 (276)
Q Consensus       231 ~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v  276 (276)
                      |.+.+++..++ +++||+++|.++.   ++++||++.+..++  +++||
T Consensus        84 ~~~~~~~~~~~~~l~fpllsD~~~~---v~~~ygv~~~~~~~~~R~tfv  129 (194)
T d1uula_          84 WTSIERKRGGLGQMNIPILADKTKC---IMKSYGVLKEEDGVAYRGLFI  129 (194)
T ss_dssp             HHHSCGGGTCCCSCSSCEEECTTCH---HHHHHTCEETTTTEECEEEEE
T ss_pred             hhhhhhhhccccCCCcceeeCCcch---HHHHcCCeeccCCceEEEEEE
Confidence            99988655443 5789999997765   79999998776544  57775

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=3e-25  Score=182.27  Aligned_cols=110  Identities=25%  Similarity=0.325  Sum_probs=98.0

Q ss_pred             cccccCCCCCcEEecCCC---------------CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcE
Q psy1172         152 DRFAAALLPGCSLLGCQA---------------SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCK  216 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G---------------~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~  216 (276)
                      .+.+|++||+|+|++.+|               +.++|+ +|+||++||+|||++|||+|+.|++.|++.+++|+++|++
T Consensus         2 ~l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~-d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~   80 (169)
T d2bmxa1           2 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSD-EHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQ   80 (169)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETT-SSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEE
T ss_pred             CCCCCCCCCCCEEeeccCCcccccccccccccccEeeHH-HHCCCeEEEEEecCCCCccccccccccccccccccccCcc
Confidence            357999999999999887               578888 8999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         217 VIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       217 Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      |++||+|+++.+++|.+.+.+..  .++|++++|.++.   ++++||++.+
T Consensus        81 vv~is~d~~~~~~~~~~~~~~~~--~~~f~ll~D~~~~---v~~~ygv~~~  126 (169)
T d2bmxa1          81 ILGVSIDSEFAHFQWRAQHNDLK--TLPFPMLSDIKRE---LSQAAGVLNA  126 (169)
T ss_dssp             EEEEESSCHHHHHHHHHHCTTGG--GCCSCEEECTTSH---HHHHHTCBCT
T ss_pred             eeeccccchhhhhhhcccccccc--cceEEEEeccHHH---HHHHcCCCcc
Confidence            99999999999999999884432  4689999997664   6889999643

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-25  Score=188.12  Aligned_cols=121  Identities=26%  Similarity=0.345  Sum_probs=105.7

Q ss_pred             cccccCCCCCcEEec---CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         152 DRFAAALLPGCSLLG---CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~---~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      .+++|++||+|+|++   .+|+.++|+ +++||++||+|||++|||.|..|++.|++.+++|+++|++|++||.|+++++
T Consensus         4 ~~~VG~~AP~F~l~~~~d~~~~~v~L~-d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~   82 (197)
T d1qmva_           4 NARIGKPAPDFKATAVVDGAFKEVKLS-DYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTH   82 (197)
T ss_dssp             TBCTTSBCCCCEEEEEETTEEEEEEGG-GGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             CCcCCCcCCCCCCcceeCCCCcEEeHH-HhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHH
Confidence            347999999999874   466789999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172         229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV  276 (276)
Q Consensus       229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v  276 (276)
                      ++|.++..++.++ +++||+++|.++.   ++++||++.+..+  ++++||
T Consensus        83 ~~~~~~~~~~~~~~~~~fpll~D~~~~---va~~ygv~~~~~g~~~R~tfi  130 (197)
T d1qmva_          83 LAWINTPRKEGGLGPLNIPLLADVTRR---LSEDYGVLKTDEGIAYRGLFI  130 (197)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTCH---HHHHTTCEETTTTEECEEEEE
T ss_pred             HhhhcchhhhcCcCCCccceEeccchH---HHHHhCCCcccCCeeeEEEEE
Confidence            9999988665544 5789999997665   7999999876554  467774

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.91  E-value=4.4e-25  Score=181.75  Aligned_cols=119  Identities=24%  Similarity=0.320  Sum_probs=100.7

Q ss_pred             cccCCCCCcEEecCCC-----CeEEecccCCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172         154 FAAALLPGCSLLGCQA-----SLVILECSIPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES  227 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G-----~~v~l~~~~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~  227 (276)
                      .+|++||||+|++++|     +.++|+ ++.|| ++||+|||++|||+|+.|++.|++.+++|+++|++|++||+|+.++
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Ls-d~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~   80 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELS-KNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQV   80 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETT-TSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeH-HHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhh
Confidence            5899999999999987     368999 77775 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccC-CcccccC
Q psy1172         228 HHDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTY-GYLGTYV  276 (276)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~-~~lg~~v  276 (276)
                      +++|++.+...+.+ +++|++++|.++.   ++++||+..+.. ..+++||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~---v~~~ygv~~~~~~~~r~tfv  128 (170)
T d1zofa1          81 HFAWKNTPVEKGGIGQVSFPMVADITKS---ISRDYDVLFEEAIALRGAFL  128 (170)
T ss_dssp             HHHHHTSCGGGTCCCCCSSCEEECTTSH---HHHHTTCEETTTEECEEEEE
T ss_pred             HHHHHhhhhhcccccCcccccccccccH---HHHHcCCCccccceeEEEEE
Confidence            99999887544332 5689999998664   789999975532 3345553

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.91  E-value=3.3e-25  Score=189.10  Aligned_cols=114  Identities=33%  Similarity=0.523  Sum_probs=101.3

Q ss_pred             cccccCCCCCcEEecCCC-CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQA-SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G-~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      ++++|++||+|+++++++ +.++|++.++|||+||+|||++|||.|+.|+..|++.+++|+++|++|+|||+|+.++|++
T Consensus         1 gi~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~   80 (219)
T d1xcca_           1 GYHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDK   80 (219)
T ss_dssp             CCCTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CCcCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhH
Confidence            467999999999997753 3689996679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC-CeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         231 WIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       231 ~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |.+...+.+++ +++||+++|.++.   ++++||+..+.
T Consensus        81 w~~~~~~~~~~~~l~fpllsD~~~~---va~~ygv~~~~  116 (219)
T d1xcca_          81 WIEDIKYYGKLNKWEIPIVCDESRE---LANKLKIMDEQ  116 (219)
T ss_dssp             HHHHHHHHHTCSCCCCCEEECTTSH---HHHHHTCEEEE
T ss_pred             HhhhhHhhcccCCCCcccccccccH---HHHHhCCcccc
Confidence            99998765554 5799999998765   78999998764

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.90  E-value=9.8e-25  Score=178.82  Aligned_cols=120  Identities=26%  Similarity=0.301  Sum_probs=102.1

Q ss_pred             ccccCCCCCcE----EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172         153 RFAAALLPGCS----LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH  228 (276)
Q Consensus       153 ~~~G~~aPdF~----L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~  228 (276)
                      ..+|++||+|+    |+|.+|+.++|+ +|+||++||+|||++|||+|+.|++.|++.+++|+++|++|++||+|+.+++
T Consensus         3 ~kvG~~APdF~~~~~l~d~~g~~vsLs-d~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~   81 (167)
T d1e2ya_           3 AKLNHPAPEFDDMALMPNGTFKKVSLS-SYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSH   81 (167)
T ss_dssp             CCTTSBCCCCEEEEECSSSCEEEEEGG-GGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHH
T ss_pred             ccCCCCCCCCcccccccCCCCcEEeHH-HHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhH
Confidence            36899999999    667799999999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc-CCeeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172         229 HDWIKALVRDCI-LGLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV  276 (276)
Q Consensus       229 ~~~~~~~~~~~~-~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v  276 (276)
                      ++|.+..++... ..++|++++|.++.   +++.||+.....++  .++||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~d~~~~---~~~~y~v~~~~~g~~~r~tfv  129 (167)
T d1e2ya_          82 LQWTSVDRKKGGLGPMAIPMLADKTKA---IARAYGVLDEDSGVAYRGVFI  129 (167)
T ss_dssp             HHHHHSCGGGTCCCCCSSCEEECTTCH---HHHHHTCEETTTTEECEEEEE
T ss_pred             HHHHhhHHHhcccccccccccccchhH---HHHHcCCCcccCCCceeEEEE
Confidence            999887654322 14589999997654   68889997665543  35553

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.9e-24  Score=175.41  Aligned_cols=107  Identities=21%  Similarity=0.201  Sum_probs=96.1

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccC--CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSI--PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH  229 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~--~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~  229 (276)
                      .+.+|++||+|+|++.+|+.++|+ ++  +|+++|++|||++|||+|+.|++.|++.|++|++ ++.+++||.|++++++
T Consensus         4 ~L~vG~~aP~f~L~~~~g~~~~l~-~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~~~~   81 (156)
T d2a4va1           4 ELEIGDPIPDLSLLNEDNDSISLK-KITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQK   81 (156)
T ss_dssp             CCCTTCBCCSCEEECTTSCEEEHH-HHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHHHHH
T ss_pred             cCCCCCCCCCeEEECCCCCEEeeH-HHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhhhHH
Confidence            457999999999999999999999 77  5678888999999999999999999999999965 5679999999999999


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      +|++++      +++||+++|+++.   ++++||+...+.
T Consensus        82 ~f~~~~------~l~f~~L~D~~~~---v~~~ygv~~~~~  112 (156)
T d2a4va1          82 KFQSKQ------NLPYHLLSDPKRE---FIGLLGAKKTPL  112 (156)
T ss_dssp             HHHHHH------TCSSEEEECTTCH---HHHHHTCBSSSS
T ss_pred             hhhccc------CccceeccchHHH---HHHHcCCCcccc
Confidence            999999      8899999998764   788999976654

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.6e-24  Score=175.01  Aligned_cols=116  Identities=28%  Similarity=0.352  Sum_probs=98.3

Q ss_pred             CCCCCcEEecC---CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHH
Q psy1172         157 ALLPGCSLLGC---QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK  233 (276)
Q Consensus       157 ~~aPdF~L~~~---~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~  233 (276)
                      ++||+|+|+++   +|++++|+ +|+||++||+|||++|||+|+.|++.|++.+++|.+.|++|++||+|+++++++|++
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~-d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~   79 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLD-DFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWIN   79 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGG-GGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCCCCCccceeeCCCccEEeHH-HhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHh
Confidence            47999998854   55689999 899999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHhccc-CCeeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172         234 ALVRDCI-LGLLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV  276 (276)
Q Consensus       234 ~~~~~~~-~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v  276 (276)
                      ....... .+++|++++|.++.   ++++||+.....+  .+++||
T Consensus        80 ~~~~~~~~~~~~f~llsD~~~~---~~~~ygv~~~~~g~~~R~tfv  122 (158)
T d1zyea1          80 TPRKNGGLGHMNIALLSDLTKQ---ISRDYGVLLEGPGLALRGLFI  122 (158)
T ss_dssp             SCGGGTCCCSCSSEEEECTTSH---HHHHTTCEETTTTEECEEEEE
T ss_pred             hhHhhccccccccccccccccH---HHHHHHhccccCCccccEEEE
Confidence            8643221 26789999998764   7889999866543  456654

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.90  E-value=2.7e-24  Score=185.45  Aligned_cols=120  Identities=27%  Similarity=0.401  Sum_probs=100.3

Q ss_pred             ccccCCCCCcEEecCCCCeEEeccc--CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECS--IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~--~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      |.+|++||+|+|++.+|+ +++.+.  .+||++||+|||++|||+|+.|++.|++++++|+++|++|||||+|+.+++++
T Consensus         1 PlIGd~aPdF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~   79 (237)
T d2zcta1           1 PLIGERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIK   79 (237)
T ss_dssp             CCTTSBCCCEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred             CCCCCCCCCeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHH
Confidence            468999999999999995 666633  38999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC---CcccccC
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY---GYLGTYV  276 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~---~~lg~~v  276 (276)
                      |.+......+.+++||+++|.++   +++++||+.....   ..+++||
T Consensus        80 w~~~~~~~~~~~l~fpllsD~~~---~vak~yGv~~~~~~~~~~RatFI  125 (237)
T d2zcta1          80 WKEWIERHIGVRIPFPIIADPQG---TVARRLGLLHAESATHTVRGVFI  125 (237)
T ss_dssp             HHHHHHHHHCCCCCSCEEECGGG---HHHHHTTCC----CCTTCCEEEE
T ss_pred             HhhhhhhhcccccccccccCcch---HHHHHcCCccccccccceeeeEE
Confidence            99987665566889999999665   4789999865433   2345554

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=2.6e-24  Score=173.42  Aligned_cols=111  Identities=23%  Similarity=0.291  Sum_probs=99.9

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCC-CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPA-FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~g-k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      +.+|++||+|+|++.+|++++|+ +++| +++||+|||++|||+|+.|++.|++.+++++.+|++|++||.|+++.+++|
T Consensus         2 l~vG~~aPdF~l~d~~G~~~sls-d~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~   80 (153)
T d1xvwa1           2 LNVGATAPDFTLRDQNQQLVTLR-GYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIW   80 (153)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGG-GGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHH
T ss_pred             CCCcCCCcCeEEECCCCCEEeHH-HHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHH
Confidence            57899999999999999999999 8888 589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY  271 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~  271 (276)
                      .+.+      ++++++++|.+.. ..++++||+..+..++
T Consensus        81 ~~~~------~~~~~~l~~~~~~-~~~~~~ygv~~~~~g~  113 (153)
T d1xvwa1          81 ATQS------GFTFPLLSDFWPH-GAVSQAYGVFNEQAGI  113 (153)
T ss_dssp             HHHH------TCCSCEEECTTTT-THHHHHTTCEETTTTE
T ss_pred             hhhh------ccceeEEeccccc-chhHHHhhhhhhccCc
Confidence            9999      8899999886432 3578999998776554

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.90  E-value=3e-24  Score=179.07  Aligned_cols=117  Identities=21%  Similarity=0.272  Sum_probs=101.3

Q ss_pred             cccCCCCCcEEecC-CCC--eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         154 FAAALLPGCSLLGC-QAS--LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       154 ~~G~~aPdF~L~~~-~G~--~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      .+|++||+|++++. +|+  +++|+ +|+||++||+|||++|||.|..|++.|++.+++|+++|++|++||+|+++++++
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLs-d~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~   80 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEK-DTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA   80 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHH-HHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHH
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHH-HhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHH
Confidence            47999999999875 553  68898 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV  276 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v  276 (276)
                      |++++...+  +++||+++|.++.   ++++||+..+..++  +++||
T Consensus        81 f~~~~~~~~--~~~fpllsD~~~~---v~~~yGv~~~~~g~~~r~tfi  123 (186)
T d1n8ja_          81 WHSSSETIA--KIKYAMIGDPTGA---LTRNFDNMREDEGLADRATFV  123 (186)
T ss_dssp             HHHHCTTGG--GCCSEEEECTTSH---HHHHTTCEETTTTEECEEEEE
T ss_pred             Hhccccccc--cccccccccHHHH---HHHHhCCCcccCCcceeeEEE
Confidence            999874322  4689999997765   79999998776554  45553

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.90  E-value=1.2e-24  Score=176.39  Aligned_cols=106  Identities=23%  Similarity=0.250  Sum_probs=98.0

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccC--CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSI--PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD  230 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~--~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~  230 (276)
                      +.+|++||+|+|++.+|+.++|+ ++  +||++||+|||++|||+|..|++.|++++++|++.++.|++||+|+++.+++
T Consensus         2 i~vG~~aPdF~L~~~~G~~~~Ls-d~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~   80 (160)
T d2cx4a1           2 VELGEKAPDFTLPNQDFEPVNLY-EVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKK   80 (160)
T ss_dssp             CCTTSBCCCCEECCTTSCCEEHH-HHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHH
T ss_pred             CcCCCCCcCeEeECCCCCEEehH-HHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhh
Confidence            57899999999999999999999 55  7999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      |.+.+      ++++++++|.++.   ++++||++.+.
T Consensus        81 ~~~~~------~~~~~~l~D~~~~---~~~~~gv~~~~  109 (160)
T d2cx4a1          81 FKDEN------RLAFNLLSDYNRE---VIKLYNVYHED  109 (160)
T ss_dssp             HHHHH------TCSSEEEECTTSH---HHHHTTCEEEE
T ss_pred             hcccc------eeeEEEeecCCcc---hHHHcCccccc
Confidence            99998      8899999997664   68899987653

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-24  Score=182.65  Aligned_cols=112  Identities=35%  Similarity=0.473  Sum_probs=98.0

Q ss_pred             ccccCCCCCcEEecCCCCeEEecccCCC-CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         153 RFAAALLPGCSLLGCQASLVILECSIPA-FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~g-k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      +.+|++||+|+|++++|+ ++|+ ++.| ||+||+|||++|||+|..|++.|++.+++|+++|++|++||+|+.++|.+|
T Consensus         1 L~VGd~APdF~l~~~~G~-v~Ls-d~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~   78 (220)
T d1prxa_           1 LLLGDVAPNFEANTTVGR-IRFH-DFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAW   78 (220)
T ss_dssp             CCTTCBCCCCEEEETTEE-EEHH-HHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCCcEeecCCCC-EEeH-HHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhh
Confidence            468999999999999985 8999 5554 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc----cCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         232 IKALVRDC----ILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       232 ~~~~~~~~----~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      .+......    ..+++||+++|.++.   ++++||+..+..
T Consensus        79 ~~~~~~~~~~~~~~~l~fpllsD~~~~---va~~ygv~~~~~  117 (220)
T d1prxa_          79 SKDINAYNSEEPTEKLPFPIIDDRNRE---LAILLGMLDPAE  117 (220)
T ss_dssp             HHHHHHHTTSCCCSCCSSCEEECTTCH---HHHHTTSSCSCT
T ss_pred             hhhhhhccccccccCcccccccCcccH---HHHHhCCccccc
Confidence            88865322    135789999997664   799999987654

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.9e-24  Score=173.84  Aligned_cols=110  Identities=19%  Similarity=0.154  Sum_probs=94.1

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+++|++||+|+|++.+|+.++|+ +|+||++||+|||+.|||+|..|++.|++++.++  .+++|++||.|+++.+++|
T Consensus        17 ~~~vG~~APdF~L~~~~g~~vsLs-d~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~--~~~~vv~Is~d~~~~~~~~   93 (164)
T d1qxha_          17 IPQAGSKAQTFTLVAKDLSDVTLG-QFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI--DNTVVLCISADLPFAQSRF   93 (164)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGG-GGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHHTTC
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHH-HhCCCeEEEEEecchhcccchHHHHHHHHHHHhh--ccceeeeEEcCCHHHHHHH
Confidence            457999999999999999999999 8999999999999999999999999999998876  5799999999999999888


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY  271 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~  271 (276)
                      .+.+      ++.++++++.+. ..+++++||+.....+.
T Consensus        94 ~~~~------~~~~~~~~~~d~-~~~~~~~ygv~~~~~~~  126 (164)
T d1qxha_          94 CGAE------GLNNVITLSTFR-NAEFLQAYGVAIADGPL  126 (164)
T ss_dssp             CSST------TCTTEEEEECTT-CHHHHHHTTCBBCSSTT
T ss_pred             HHHh------CCCcceeecccc-chhhHHhcCeEeecCcc
Confidence            8777      666666655432 24578999998665443

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.87  E-value=2.6e-23  Score=171.02  Aligned_cols=83  Identities=28%  Similarity=0.451  Sum_probs=77.5

Q ss_pred             CCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCC
Q psy1172          16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKK   95 (276)
Q Consensus        16 ~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~   95 (276)
                      +.+++||+|+|++++++++|||+.+.     +  .+.|+|||||++|+|++++.+++..+||++||||+|++||.+++++
T Consensus        88 ~~~~~f~llsD~~~~~~~~ygv~~~~-----~--~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~lq~~~~~~  160 (170)
T d2h01a1          88 IGNIKHTLISDISKSIARSYDVLFNE-----S--VALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYG  160 (170)
T ss_dssp             CCSCSSEEEECTTSHHHHHTTCEETT-----T--EECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCceeEcCccHHHHHhCCcccc-----c--cceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhhhhcC
Confidence            46799999999999999999998653     2  3689999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCC
Q psy1172          96 VATPVDWKVG  105 (276)
Q Consensus        96 ~~~p~~w~~g  105 (276)
                      ++||+||+||
T Consensus       161 ~~~~~~w~~g  170 (170)
T d2h01a1         161 DVCPANWQKG  170 (170)
T ss_dssp             CCCCSSCCCC
T ss_pred             CccCCCCCCC
Confidence            9999999998

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.87  E-value=7.7e-23  Score=168.22  Aligned_cols=115  Identities=21%  Similarity=0.254  Sum_probs=95.0

Q ss_pred             CCCCcEEecC----CCCeEEecccCCC-CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172         158 LLPGCSLLGC----QASLVILECSIPA-FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI  232 (276)
Q Consensus       158 ~aPdF~L~~~----~G~~v~l~~~~~g-k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~  232 (276)
                      +||||+|++.    ++++++|+ +++| |++||+|||++|||+|++|++.|++.+++|++.|++||+||.|++++|++|.
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~-d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~   79 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLS-DFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWK   79 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGG-GGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCeEeeeecCCCCccEEehH-HHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHh
Confidence            5899999954    44589999 7777 7999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhccc-CCeeEEEeeCCcchhhhhhhhcccccccC-CcccccC
Q psy1172         233 KALVRDCI-LGLLINLSVDDFKEVEGRSRRFQESLNTY-GYLGTYV  276 (276)
Q Consensus       233 ~~~~~~~~-~~~~~~~l~D~~~~~~~~a~~ygv~~~~~-~~lg~~v  276 (276)
                      ++...... .+++|++++|.++.   ++++||+..+.. ..+++||
T Consensus        80 ~~~~~~~~~~~~~f~llsD~~~~---~~~~ygv~~~~~~~~R~tfi  122 (170)
T d2h01a1          80 KTPLSQGGIGNIKHTLISDISKS---IARSYDVLFNESVALRAFVL  122 (170)
T ss_dssp             TSCGGGTCCCSCSSEEEECTTSH---HHHHTTCEETTTEECCEEEE
T ss_pred             hhhhhhccccccCCceeEcCccH---HHHHhCCccccccceeeeEE
Confidence            87643322 25789999998765   688999965432 2345553

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=8.4e-23  Score=166.94  Aligned_cols=111  Identities=17%  Similarity=0.135  Sum_probs=94.1

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+++|++||+|+|++.+|+.++|+ +|+||++||+|||+.|||.|..|++.|++.+++|+  |+.|++||+|+++++++|
T Consensus        15 ~p~vG~~APdF~L~d~~g~~v~Ls-d~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~~~~~~~~   91 (164)
T d1q98a_          15 FPQVGEIVENFILVGNDLADVALN-DFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADLPFAQARF   91 (164)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGG-GGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSCHHHHTTC
T ss_pred             CCCCCCCCCCcEEECCCCCEEeeh-hhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCcHHHHHHH
Confidence            467999999999999999999999 89999999999999999999999999999999994  799999999999999999


Q ss_pred             HHHHHhcccCCee-EEEeeCCcchhhhhhhhcccccccCCccc
Q psy1172         232 IKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLNTYGYLG  273 (276)
Q Consensus       232 ~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~~~~lg  273 (276)
                      .+.+      ++. +.+++|...  ..+++.||+.....++.|
T Consensus        92 ~~~~------~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~g  126 (164)
T d1q98a_          92 CGAE------GIENAKTVSTFRN--HALHSQLGVDIQTGPLAG  126 (164)
T ss_dssp             TTTT------TCTTEEEEECTTC--THHHHHTTCEECSSTTTT
T ss_pred             HHHh------CCccccccccccc--hhHHHhhceecccCcccc
Confidence            8877      554 455554322  246888999876654433

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=6.2e-22  Score=161.91  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=86.0

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .|++|++||+|+|++.+|+.++|+ +|+||++||+|||+.|||+|..|++.|++   ++++.|++|++||+|+++++++|
T Consensus        16 ~p~iG~~aP~F~L~~~~g~~v~L~-d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~---~~~~~g~~vv~Is~d~~~~~~~~   91 (166)
T d1xvqa_          16 LPAVGSPAPAFTLTGGDLGVISSD-QFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDLPFAQKRF   91 (166)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGG-GGTTSCEEEEECSCCCSSCCCHHHHHHHH---HHHHTTCEEEEEESSCHHHHTTC
T ss_pred             CCCCcCCCCCeEEECCCCCEEehH-HhCCcEEEEEeeecccccccHHHHHHHhh---hcccccccccccccchHHHHHHH
Confidence            468999999999999999999999 89999999999999999999999998865   45678999999999999999999


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY  271 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~  271 (276)
                      .+.+      ++.+.++.+..  ...+++.||+.......
T Consensus        92 ~~~~------~~~~~~~~~~~--~~~~~~~~g~~~~~~~~  123 (166)
T d1xvqa_          92 CGAE------GTENVMPASAF--RDSFGEDYGVTIADGPM  123 (166)
T ss_dssp             C------------CEEEEECT--TSSHHHHTTCBBCSSTT
T ss_pred             HHHh------CCcccccccch--hHHHHHHhCeeeccCcc
Confidence            8887      56666554432  23467889987654443

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.85  E-value=8.9e-22  Score=160.52  Aligned_cols=110  Identities=21%  Similarity=0.174  Sum_probs=93.5

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW  231 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~  231 (276)
                      .+++|++||+|+|++.+|++++|+ +|+||++||+|||+.|||+|..|++.|++.+.+|  .++.|++||.|+++.+++|
T Consensus        15 ~l~vG~~aPdF~L~~~~g~~vsLs-d~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~--~~~~vv~Is~d~~~~~~~~   91 (163)
T d1psqa_          15 QLQVGDKALDFSLTTTDLSKKSLA-DFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQKRW   91 (163)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGG-GGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCCCCeEEECCCCCEEehH-HhCCcEEEEEeccccccccchhhHHHHHHHHHhh--cccceEEEEeccHHHHHHH
Confidence            457999999999999999999999 8999999999999999999999999999998888  4799999999999999999


Q ss_pred             HHHHHhcccCCee-EEEeeCCcchhhhhhhhcccccccCCcc
Q psy1172         232 IKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLNTYGYL  272 (276)
Q Consensus       232 ~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~~~~l  272 (276)
                      .+..      +.. +.+++|..  ...++++||+....++..
T Consensus        92 ~~~~------~~~~~~~~~~~~--~~~~~~~ygv~~~~~~~~  125 (163)
T d1psqa_          92 CGAE------GLDNAIMLSDYF--DHSFGRDYALLINEWHLL  125 (163)
T ss_dssp             HHHH------TCTTSEEEECTT--TCHHHHHHTCBCTTTCSB
T ss_pred             HHHc------CCcceeeecccc--chhHHHhheeecccccce
Confidence            9888      433 33443421  124688999988877654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.4e-21  Score=162.96  Aligned_cols=106  Identities=8%  Similarity=0.139  Sum_probs=89.9

Q ss_pred             cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------
Q psy1172         152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------  223 (276)
Q Consensus       152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------  223 (276)
                      .+.+|++||+|+|+|.+|+.++|+ +|+||++||+|| ++|||+|+.++|.|++++++|++ ++.+++|+.+        
T Consensus         5 ~l~vG~~aPdF~l~d~~G~~~~Ls-d~kGk~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~~   81 (187)
T d2cvba1           5 ELPLESPLIDAELPDPRGGRYRLS-QFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPED   81 (187)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGG-GCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGGG
T ss_pred             CCCCCCccCccEeecCCCCEEEHH-HhCCCeEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeeeecccccccccc
Confidence            346899999999999999999999 899999999999 99999999999999999999976 5889988753        


Q ss_pred             ChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         224 SVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      +.+..+++.+.+      +++|+++.|.++.   +++.||+..-++
T Consensus        82 ~~e~~~~~~~~~------~~~~p~l~D~~~~---~~~~~~v~~~P~  118 (187)
T d2cvba1          82 APEKMAAFAEEH------GIFFPYLLDETQE---VAKAYRALRTPE  118 (187)
T ss_dssp             SHHHHHHHHHHH------TCCSCEEECSSSH---HHHHTTCCEESE
T ss_pred             chHHHHHHHHHh------CCcceeeechhhh---hcccccccceee
Confidence            335566677777      8899999997664   688898865443

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=2.2e-20  Score=147.00  Aligned_cols=101  Identities=11%  Similarity=0.077  Sum_probs=88.9

Q ss_pred             cCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHHHHH
Q psy1172         156 AALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDWIKA  234 (276)
Q Consensus       156 G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~~~~  234 (276)
                      |+.+|+|++++.+|+.++++ +++||++||+|| ++|||+|+.++|.|+++++++  +++.+++|+.+ +....++|.++
T Consensus         1 ~d~~~~f~~~~~~G~~~~l~-~~~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~--~~v~~v~v~~~~~~~~~~~~~~~   76 (134)
T d1lu4a_           1 ADERLQFTATTLSGAPFDGA-SLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAAN--PAVTFVGIATRADVGAMQSFVSK   76 (134)
T ss_dssp             CGGGGCCEEEBTTSCEEEGG-GGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCHHHHHHHHHH
T ss_pred             CCCCCcceeECCCCCEEcHH-HhCCCEEEEEEe-ecccCCceecchhHHHHhhhh--ccccccccccccchhhhhhhhhh
Confidence            68899999999999999999 899999999999 999999999999999999875  68999999985 67788888888


Q ss_pred             HHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         235 LVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       235 ~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      +      ++.||++.|.++.   ++++||+..-++
T Consensus        77 ~------~~~~p~~~d~~~~---~~~~~~v~~~P~  102 (134)
T d1lu4a_          77 Y------NLNFTNLNDADGV---IWARYNVPWQPA  102 (134)
T ss_dssp             H------TCCSEEEECTTSH---HHHHTTCCSSSE
T ss_pred             h------ccccceeeCchHH---HHHHcCCCcCCE
Confidence            8      8899999987654   688899865443

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=3e-20  Score=146.47  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=91.8

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDWIK  233 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~~~  233 (276)
                      .|++||+|++++.+|+.++++ +++||++||+|| ++|||+|..+++.+++++++|.++++.|++||.| +.+.+++|.+
T Consensus         1 ~G~~~P~f~l~~~~G~~~~l~-~~~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~   78 (137)
T d1st9a_           1 EGSDAPNFVLEDTNGKRIELS-DLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMK   78 (137)
T ss_dssp             CCEECCCCEEECTTSCEEEGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHH
T ss_pred             CcCcCCCeEEECCCcCEEeHH-HhCCCEEEEEEe-eccccceeecccccccccccccccccccccccccchhhhHHHHHH
Confidence            389999999999999999999 899999999999 9999999999999999999999999999999985 6778888888


Q ss_pred             HHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         234 ALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       234 ~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ++      +++|+++.|.++.   +++.||+..-+
T Consensus        79 ~~------~~~~~~~~d~~~~---~~~~~~v~~~P  104 (137)
T d1st9a_          79 SY------GVNFPVVLDTDRQ---VLDAYDVSPLP  104 (137)
T ss_dssp             HT------TCCSCEEEETTSH---HHHHTTCCSSC
T ss_pred             Hc------CCCccccccccch---hhhhhhccccc
Confidence            88      7889999886553   67888886543

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-20  Score=149.29  Aligned_cols=111  Identities=18%  Similarity=0.224  Sum_probs=95.0

Q ss_pred             ccccCCCCCcEEec-CCCCeEEecccCCCCeEEEEEEcCCCCcccHH-HHHHHHHHHHHHHhCCcE-EEEEeCCChHHHH
Q psy1172         153 RFAAALLPGCSLLG-CQASLVILECSIPAFWGILFSHPSDFTPVCTT-ELARVLQLIKEFEQRTCK-VIALSCDSVESHH  229 (276)
Q Consensus       153 ~~~G~~aPdF~L~~-~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~-el~~l~~~~~~~~~~gv~-Vv~VS~D~~~~~~  229 (276)
                      +++|+++|+|+|.+ .+|+.++|++.++||++||+|||++|||.|.. +++.+.+.+++|.++|++ |+++|+|++..++
T Consensus         3 ikVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~   82 (161)
T d1hd2a_           3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTG   82 (161)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHH
T ss_pred             CCCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhhh
Confidence            57999999999986 56889999966799999999999999999965 788899999999999975 6689999999999


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCC
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      +|.+...    ...++++++|+++.   ++++||+..+..+
T Consensus        83 ~~~~~~~----~~~~~~llsD~~~~---~a~~~g~~~~~~~  116 (161)
T d1hd2a_          83 EWGRAHK----AEGKVRLLADPTGA---FGKETDLLLDDSL  116 (161)
T ss_dssp             HHHHHTT----CTTTCEEEECTTCH---HHHHHTCBCCSTT
T ss_pred             hhhhhcc----cccccccccCCcce---eeeeeeeeecccc
Confidence            9998872    24479999997664   7899999877654

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.76  E-value=1.6e-19  Score=148.02  Aligned_cols=77  Identities=29%  Similarity=0.497  Sum_probs=71.6

Q ss_pred             CCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCC
Q psy1172          16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKK   95 (276)
Q Consensus        16 ~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~   95 (276)
                      +.+++||+++|++++++++||++.+.     |+  +.|+|||||++|+||+++.+++.++||++|+|++|++||.+++|+
T Consensus        94 ~~~~~~~~l~D~~~~v~~~ygv~~~~-----~~--~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aLq~~~~~~  166 (170)
T d1zofa1          94 IGQVSFPMVADITKSISRDYDVLFEE-----AI--ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHG  166 (170)
T ss_dssp             CCCCSSCEEECTTSHHHHHTTCEETT-----TE--ECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCcccccccccccHHHHHcCCCccc-----cc--eeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcC
Confidence            36799999999999999999998654     43  689999999999999999999999999999999999999999999


Q ss_pred             CCcC
Q psy1172          96 VATP   99 (276)
Q Consensus        96 ~~~p   99 (276)
                      ++||
T Consensus       167 ~~~p  170 (170)
T d1zofa1         167 EVCP  170 (170)
T ss_dssp             CCCC
T ss_pred             CcCc
Confidence            9998

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.76  E-value=8.8e-19  Score=142.41  Aligned_cols=112  Identities=17%  Similarity=0.252  Sum_probs=91.7

Q ss_pred             cccccCCCCCcEEe----cCCCCeEEecccCCCCeEEEEEEcCCCCcccHHH-HHHHHHHHHHHHhCCc-EEEEEeCCCh
Q psy1172         152 DRFAAALLPGCSLL----GCQASLVILECSIPAFWGILFSHPSDFTPVCTTE-LARVLQLIKEFEQRTC-KVIALSCDSV  225 (276)
Q Consensus       152 ~~~~G~~aPdF~L~----~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~e-l~~l~~~~~~~~~~gv-~Vv~VS~D~~  225 (276)
                      .+++|+++|+|+|.    +.++++++|++.++||+|||+|||++|||.|..| ++.+.+.++++.++|. +|++||+|++
T Consensus         3 ~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~~   82 (162)
T d1tp9a1           3 PIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP   82 (162)
T ss_dssp             CCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCH
T ss_pred             CCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccch
Confidence            35799999999996    3345679998668999999999999999999765 5666777788888875 7999999999


Q ss_pred             HHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCC
Q psy1172         226 ESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      +.+++|.....    ...++++++|+.++   ++++||+..+..+
T Consensus        83 ~~~~~~~~~~~----~~~~~~~lsD~~~~---~~~~~g~~~~~~~  120 (162)
T d1tp9a1          83 FVMKAWAKSYP----ENKHVKFLADGSAT---YTHALGLELDLQE  120 (162)
T ss_dssp             HHHHHHHHTCT----TCSSEEEEECTTSH---HHHHTTCEEEETT
T ss_pred             hhhhhhhhhcc----cccccccccchhhH---HHhhhhhcccccc
Confidence            99999998872    23469999997665   7889998766443

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.74  E-value=1.4e-18  Score=138.28  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=82.9

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHH-hCCcEEEEEeCCChHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFE-QRTCKVIALSCDSVESHHDWIK  233 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~-~~gv~Vv~VS~D~~~~~~~~~~  233 (276)
                      +|+.+|+|++...+|+.++|+ +|+||++||+|| ++||++|++++|.|+++|++|. +.+++|++||.|...  ..+.+
T Consensus         4 ~~k~~P~~~~~~~~~~~v~l~-~~~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~--~~~~~   79 (144)
T d1o73a_           4 LAKYLPGATNLLSKSGEVSLG-SLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENE--SDFHD   79 (144)
T ss_dssp             GGGTSCTTCCBBCTTSCBCSG-GGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSH--HHHHH
T ss_pred             cccCCCCceeeccCCCEEeHH-HhCCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhH--HHHHH
Confidence            689999999999999899999 899999999999 9999999999999999999995 568999999998543  23333


Q ss_pred             HHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         234 ALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       234 ~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ...+.   . .+.++.|.......+++.||+..-
T Consensus        80 ~~~~~---~-~~~~~~~~~~~~~~l~~~y~v~~~  109 (144)
T d1o73a_          80 YYGKM---P-WLALPFDQRSTVSELGKTFGVESI  109 (144)
T ss_dssp             HHTTC---S-SEECCTTCHHHHHHHHHHHTCCSS
T ss_pred             HHHhc---c-ccceeeeccchHHHHHHHcCCCcC
Confidence            33222   2 255555655555556888988643

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.74  E-value=3.6e-18  Score=140.10  Aligned_cols=94  Identities=16%  Similarity=0.183  Sum_probs=81.9

Q ss_pred             cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--ChHHHHHH
Q psy1172         154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--SVESHHDW  231 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--~~~~~~~~  231 (276)
                      ..+.++|+|+|++.+|+.++|+ +++||++||+|| ++|||+|..+++.++++++++.+.++.|++||.|  +++..++|
T Consensus        31 ~~~~~~Pdf~l~d~~G~~v~L~-~~kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~  108 (176)
T d1jfua_          31 SAPLKLPDLAFEDADGKPKKLS-DFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTF  108 (176)
T ss_dssp             CSCCBCCCCEEECTTSCEEEGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHH
T ss_pred             CCCCcCCCeEEECCCcCEEeHH-HhCCCEEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhhhhhh
Confidence            3567799999999999999999 899999999999 9999999999999999999999999999999986  56778888


Q ss_pred             HHHHHhcccCCee-EEEeeCCcchh
Q psy1172         232 IKALVRDCILGLL-INLSVDDFKEV  255 (276)
Q Consensus       232 ~~~~~~~~~~~~~-~~~l~D~~~~~  255 (276)
                      .+++      ++. ++++.|.....
T Consensus       109 ~~~~------~~~~~~~~~d~~~~~  127 (176)
T d1jfua_         109 LKEA------NLTRLGYFNDQKAKV  127 (176)
T ss_dssp             HHHT------TCCTTCCEECTTCHH
T ss_pred             Hhhh------CCcceeeeecchhHH
Confidence            8877      555 34677765543

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=2e-18  Score=139.78  Aligned_cols=71  Identities=24%  Similarity=0.482  Sum_probs=64.9

Q ss_pred             CCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccc
Q psy1172          16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTD   92 (276)
Q Consensus        16 ~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~   92 (276)
                      .++++||+|+|++++++++||+.....    |+  +.|+|||||++|+|++++.+++.++||++|+|+.|++||+++
T Consensus        87 ~~~~~f~llsD~~~~~~~~ygv~~~~~----g~--~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkalq~~~  157 (158)
T d1zyea1          87 LGHMNIALLSDLTKQISRDYGVLLEGP----GL--ALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE  157 (158)
T ss_dssp             CCSCSSEEEECTTSHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccHHHHHHHhccccC----Cc--cccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhhh
Confidence            368999999999999999999986543    44  689999999999999999999999999999999999999876

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=1e-17  Score=131.11  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=80.3

Q ss_pred             CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC-CChHHHHHHHHHHHhc
Q psy1172         160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC-DSVESHHDWIKALVRD  238 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~-D~~~~~~~~~~~~~~~  238 (276)
                      .+|++++.+|+.++++ +++||++||+|| ++|||+|++|+|.|++++++++  +..+++|+. |+....++|.+++   
T Consensus         6 ~df~~~~~~G~~~~l~-~~~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~~---   78 (134)
T d1zzoa1           6 LQFSAKTLDGHDFHGE-SLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKY---   78 (134)
T ss_dssp             GCCEEEBTTSCEEEGG-GGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHT---
T ss_pred             cceeEEcCCCCEEeHH-HhCCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHhc---
Confidence            5799999999999999 899999999999 9999999999999999999874  567777776 4677777888777   


Q ss_pred             ccCCe-eEEEeeCCcchhhhhhhhccccccc
Q psy1172         239 CILGL-LINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       239 ~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                         +. .++++.|.++.   +++.||+..-+
T Consensus        79 ---~~~~~~~l~D~~~~---~~~~~~v~~~P  103 (134)
T d1zzoa1          79 ---PVKTFTQLADTDGS---VWANFGVTQQP  103 (134)
T ss_dssp             ---TCTTSEEEECTTCH---HHHHTTCCSSS
T ss_pred             ---CCcceeEEeeccch---HHHhcCCCccC
Confidence               44 48999987654   67888876443

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=4.6e-18  Score=134.85  Aligned_cols=103  Identities=10%  Similarity=0.058  Sum_probs=85.6

Q ss_pred             cccCCCCCcEEec--CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC------h
Q psy1172         154 FAAALLPGCSLLG--CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS------V  225 (276)
Q Consensus       154 ~~G~~aPdF~L~~--~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~------~  225 (276)
                      .+|++||+|++.+  .+|+.++++ .++||++||+|| ++|||+|.+++|.|+++++++++ ++.+|+|+.+.      .
T Consensus         2 k~g~~aP~~~~~~~~~ng~~~~~~-~~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~   78 (143)
T d2b5xa1           2 KLRQPMPELTGEKAWLNGEVTREQ-LIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDP   78 (143)
T ss_dssp             CTTCBCCCCCCCSEEESCCCCHHH-HTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSH
T ss_pred             CCCCcCCCCcCCccCcCCeEecHH-HhCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccch
Confidence            5899999999877  488888877 899999999999 99999999999999999999965 68999998753      3


Q ss_pred             HHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         226 ESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      ...++|.+++      +++||++.|.++.   +++.|++..-+
T Consensus        79 ~~~~~~~~~~------~~~~p~~~D~~~~---~~~~~~v~~~P  112 (143)
T d2b5xa1          79 GKIKETAAEH------DITQPIFVDSDHA---LTDAFENEYVP  112 (143)
T ss_dssp             HHHHHHHHHT------TCCSCEEECSSCH---HHHHTCCCCSS
T ss_pred             hhhhhHHHhh------ccCccccccCccc---hHHHcCCCcCC
Confidence            4566777777      7899999997664   57788875433

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.70  E-value=4.8e-18  Score=138.62  Aligned_cols=76  Identities=21%  Similarity=0.406  Sum_probs=67.5

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccC-C
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTK-K   95 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~-~   95 (276)
                      ++++||+|+|++++++++||++.+..    |+  +.|+||||||+|+|++++.++..++||++|+||.|++||.+.++ +
T Consensus        90 ~~~~fpll~D~~~~v~~~ygv~~~~~----~~--~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal~~~~~~~g  163 (166)
T d1we0a1          90 GSIEYIMIGDPSQTISRQFDVLNEET----GL--ADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPG  163 (166)
T ss_dssp             HTCCSEEEECTTCHHHHHTTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHHHHTSTT
T ss_pred             cccccccccCcccHHHHHhCCCcccc----Cc--ccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhcchhhhcCC
Confidence            35999999999999999999986543    44  67999999999999999999999999999999999999999887 3


Q ss_pred             CCc
Q psy1172          96 VAT   98 (276)
Q Consensus        96 ~~~   98 (276)
                      +.|
T Consensus       164 ~~c  166 (166)
T d1we0a1         164 EVC  166 (166)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            444

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.67  E-value=4.6e-17  Score=128.72  Aligned_cols=106  Identities=14%  Similarity=0.201  Sum_probs=79.8

Q ss_pred             ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeCCChHHHHHHHH
Q psy1172         155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSCDSVESHHDWIK  233 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~D~~~~~~~~~~  233 (276)
                      +|+.+|+|++.+.+|++++|+ +++||++||+|| ++|||+|..+++.|.+++++|... ++.+++||.|+..  +.+..
T Consensus         2 ~~k~~P~~~~~~~~g~~v~l~-~l~GK~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~--~~~~~   77 (144)
T d1o8xa_           2 LDKYLPGIEKLRRGDGEVEVK-SLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEE--DGFAG   77 (144)
T ss_dssp             GGGTSTTCCEEEETTEEEEGG-GGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSH--HHHHH
T ss_pred             CCCCCCCcEeEcCCCCEEeHH-HhCCCEEEEEec-cccccccccccchhHHhhhhcccccccccccccccccH--HHHHH
Confidence            578999999999999999999 999999999999 999999999999999999999654 7999999998543  23333


Q ss_pred             HHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172         234 ALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT  268 (276)
Q Consensus       234 ~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~  268 (276)
                      .+.+..  ...++++  .+....++++.|++..-+
T Consensus        78 ~~~~~~--~~~~~~~--~~d~~~~l~~~y~v~~~P  108 (144)
T d1o8xa_          78 YFAKMP--WLAVPFA--QSEAVQKLSKHFNVESIP  108 (144)
T ss_dssp             HHTTCS--SEECCGG--GHHHHHHHHHHTTCCSSS
T ss_pred             HHhhcc--ccceeee--cccchhhHHHHcCCCcCC
Confidence            332221  2233333  222334568888886433

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.63  E-value=1e-15  Score=124.80  Aligned_cols=106  Identities=12%  Similarity=0.061  Sum_probs=82.2

Q ss_pred             cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHHhCC--cEEEEEeCC----ChH
Q psy1172         154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFEQRT--CKVIALSCD----SVE  226 (276)
Q Consensus       154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D----~~~  226 (276)
                      -++.++|+|+|+|.+|+.++++ +|+||++||+|| .+||| .|..+++.|.+++++|++.|  +.+++||+|    +++
T Consensus         6 p~~~~~p~F~l~d~~G~~vsl~-d~~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~   83 (172)
T d1xzoa1           6 PLNYEVEPFTFQNQDGKNVSLE-SLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPK   83 (172)
T ss_dssp             CCCEECCCCEEECTTSCEEETG-GGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHH
T ss_pred             CCCCcCCCeEEEcCCCCEEcHH-HhCCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccchHH
Confidence            3677899999999999999999 899999999999 88897 79999999999999998755  788999986    456


Q ss_pred             HHHHHHHHHHhcccCCe-eEEEeeCCcchhhh-h-hhhcccc
Q psy1172         227 SHHDWIKALVRDCILGL-LINLSVDDFKEVEG-R-SRRFQES  265 (276)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~-~-a~~ygv~  265 (276)
                      .+++|++.+    ++.. .+.++++....... . ...|++.
T Consensus        84 ~l~~y~~~~----~~~~~~w~~lt~~~~~~~~~~~~~~~~~~  121 (172)
T d1xzoa1          84 QLKKFAANY----PLSFDNWDFLTGYSQSEIEEFALKSFKAI  121 (172)
T ss_dssp             HHHHHHTTS----CCCGGGEEEEBCSCHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHh----ccccccceeeccchHHHHHHHHHhheeeE
Confidence            677777665    2222 36788775543322 2 4556554

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.63  E-value=1.6e-16  Score=129.21  Aligned_cols=73  Identities=36%  Similarity=0.697  Sum_probs=66.7

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCC
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKK   95 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~   95 (276)
                      ..++||+++|+++++++.|||+.+..    |+  +.|++||||++|+||+++.++..++||++|+|++|++||++++|+
T Consensus        95 ~~~~~~~l~d~~~~~~~~y~v~~~~~----g~--~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~alq~~~~~g  167 (167)
T d1e2ya_          95 GPMAIPMLADKTKAIARAYGVLDEDS----GV--AYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHG  167 (167)
T ss_dssp             CCCSSCEEECTTCHHHHHHTCEETTT----TE--ECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccccchhHHHHHcCCCcccC----CC--ceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHHhHHHhcC
Confidence            56999999999999999999986643    44  679999999999999999999999999999999999999999875

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.62  E-value=3.4e-16  Score=124.46  Aligned_cols=101  Identities=15%  Similarity=0.140  Sum_probs=72.0

Q ss_pred             CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeCCChHHHHHHHHHHHhcc
Q psy1172         161 GCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSCDSVESHHDWIKALVRDC  239 (276)
Q Consensus       161 dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~D~~~~~~~~~~~~~~~~  239 (276)
                      .+.+.+.+|..++|+ +++||+++|+|| |+||++|+.++|.|+++|+++++. +++||+||.|...  .++.+.+.+. 
T Consensus        10 ~~~~l~~~~~~v~ls-~l~GK~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~--~~~~~~~~~~-   84 (144)
T d1i5ga_          10 STNVLKGAAADIALP-SLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESA--EDFKDYYAKM-   84 (144)
T ss_dssp             CSEEEETTEEEEEGG-GGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSH--HHHHHHHTTC-
T ss_pred             chhhccCCCCEeeHH-HcCCCEEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccH--HHHHHHHHhC-
Confidence            445556677789999 999999999999 999999999999999999999764 7899999998532  2444444332 


Q ss_pred             cCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         240 ILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       240 ~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                        +..+....| ......+++.||+..-++
T Consensus        85 --~~~~~~~~d-~~~~~~l~~~y~v~~iPt  111 (144)
T d1i5ga_          85 --PWLALPFED-RKGMEFLTTGFDVKSIPT  111 (144)
T ss_dssp             --SSEECCTTC-HHHHHHHHHHTTCCSSSE
T ss_pred             --CCCceeeEC-hHHHHHHHHHCCCCCcCE
Confidence              332222222 222234578898864443

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=5.8e-16  Score=126.07  Aligned_cols=66  Identities=39%  Similarity=0.744  Sum_probs=60.5

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ..++||+|+|++++++++|||+.+.     +.  +.|++||||++|+||+++.++..++||++|+|+.|++||
T Consensus       103 ~~~~f~ll~D~~~~v~~~ygv~~~~-----~~--~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~alq  168 (169)
T d2bmxa1         103 KTLPFPMLSDIKRELSQAAGVLNAD-----GV--ADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  168 (169)
T ss_dssp             GGCCSCEEECTTSHHHHHHTCBCTT-----SS--BCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             ccceEEEEeccHHHHHHHcCCCccC-----Cc--cceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHhc
Confidence            5699999999999999999998543     33  679999999999999999999999999999999999998

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.59  E-value=9.2e-16  Score=124.42  Aligned_cols=107  Identities=16%  Similarity=0.168  Sum_probs=84.6

Q ss_pred             ccCCCCCcEEecCCC---CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHH-HHHhCCc-EEEEEeCCChHHHH
Q psy1172         155 AAALLPGCSLLGCQA---SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIK-EFEQRTC-KVIALSCDSVESHH  229 (276)
Q Consensus       155 ~G~~aPdF~L~~~~G---~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~-~~~~~gv-~Vv~VS~D~~~~~~  229 (276)
                      .|+++|+|+|+...|   +.++|++.|+||+|||+|||++|+|.|..|+..+.+.+. .++.+++ .|++++.+++..++
T Consensus         3 ~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~~   82 (163)
T d1nm3a2           3 EGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMN   82 (163)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHH
T ss_pred             CCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHHH
Confidence            699999999998766   478999557999999999999999999999988776654 4455554 67788888888888


Q ss_pred             HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172         230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                      +|.+...     ...+++++|+.+.   .+++||+.....
T Consensus        83 a~~~~~~-----~~~~~llsD~~~~---~~~~~g~~~~~~  114 (163)
T d1nm3a2          83 AWKEDEK-----SENISFIPDGNGE---FTEGMGMLVGKE  114 (163)
T ss_dssp             HHHHHTT-----CTTSEEEECTTSH---HHHHTTCEEECT
T ss_pred             HHhhhhc-----cCceeeeccCChH---HHHHhhhhcccc
Confidence            8876662     3469999997664   678898865533

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.58  E-value=1e-16  Score=126.54  Aligned_cols=100  Identities=10%  Similarity=0.074  Sum_probs=78.6

Q ss_pred             CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh---HHHHHHHHHHH
Q psy1172         160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV---ESHHDWIKALV  236 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~---~~~~~~~~~~~  236 (276)
                      |..+|++.+|+.++|+ .++||++||+|| ++|||+|++++|.|++++++++..++.+++|+.+..   ...+.+.+.+.
T Consensus         4 ~~~~l~~~~~~~~~l~-~~~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~   81 (143)
T d2fy6a1           4 TLSTLKTADNRPASVY-LKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA   81 (143)
T ss_dssp             HHHTCEETTSCBGGGG-CCTTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHT
T ss_pred             CcceeECCCCCEeeHH-HhCCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhh
Confidence            4457899999999999 899999999999 999999999999999999999999999999997532   12223333333


Q ss_pred             hcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172         237 RDCILGLLINLSVDDFKEVEGRSRRFQESL  266 (276)
Q Consensus       237 ~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~  266 (276)
                      +..  ...|+++.|.++.   +++.||+..
T Consensus        82 ~~~--~~~~~~~~D~~~~---~~~~~~v~~  106 (143)
T d2fy6a1          82 GLN--YPKLPVVTDNGGT---IAQSLNISV  106 (143)
T ss_dssp             TSC--CTTSCEEECTTCH---HHHHTTCCS
T ss_pred             hcC--CcccccccccchH---HHHHcCCCc
Confidence            321  3368999886654   678888753

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.56  E-value=9.4e-16  Score=121.30  Aligned_cols=96  Identities=10%  Similarity=0.118  Sum_probs=73.5

Q ss_pred             CCCCcEEecCCC--------CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHH
Q psy1172         158 LLPGCSLLGCQA--------SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESH  228 (276)
Q Consensus       158 ~aPdF~L~~~~G--------~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~  228 (276)
                      +||+|+|+..+|        ..++++ +++||++||+|| ++|||+|+.++|.+++++++   .++++++|+.+ +....
T Consensus         2 paP~~~lp~~~g~~~~~~~~~~~~~~-~~kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~---~~~~~~~i~~~~~~~~~   76 (144)
T d1knga_           2 PAPQTALPPLEGLQADNVQVPGLDPA-AFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYKDAADNA   76 (144)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGG-GGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESCCHHHH
T ss_pred             CCCCCCCCCCCCccccCCcCCccCHH-HhCCCEEEEEee-ccccccccccCchhhhhhhc---cCceeEEEEeeechHHH
Confidence            578888877766        457777 899999999999 99999999999999987654   46899999876 45566


Q ss_pred             HHHHHHHHhcccCCeeE-EEeeCCcchhhhhhhhcccccc
Q psy1172         229 HDWIKALVRDCILGLLI-NLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       229 ~~~~~~~~~~~~~~~~~-~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ++|.+.+      +..+ +++.|.++   ++++.||+..-
T Consensus        77 ~~~~~~~------~~~~~~~~~d~~~---~~~~~~~v~~~  107 (144)
T d1knga_          77 RRFLGRY------GNPFGRVGVDANG---RASIEWGVYGV  107 (144)
T ss_dssp             HHHHHHH------CCCCSEEEEETTS---HHHHHTTCCSS
T ss_pred             HHHHHHc------CCccccccccccc---hhhhhcCcccc
Confidence            7777777      4443 46667654   36788887543

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.53  E-value=8.1e-15  Score=119.95  Aligned_cols=107  Identities=14%  Similarity=0.265  Sum_probs=87.7

Q ss_pred             ccCCCCCcEEe----------cCCC-----CeEEecccCCCCeEEEEEEcCCCCcccHH-HHHHHHHHHHHH-HhCCc-E
Q psy1172         155 AAALLPGCSLL----------GCQA-----SLVILECSIPAFWGILFSHPSDFTPVCTT-ELARVLQLIKEF-EQRTC-K  216 (276)
Q Consensus       155 ~G~~aPdF~L~----------~~~G-----~~v~l~~~~~gk~vvL~f~pa~~cp~C~~-el~~l~~~~~~~-~~~gv-~  216 (276)
                      +|+.+|+.++.          +.+|     +.+++++.|+||+|||+++|++|+|.|.. ++|.+.+.|++| +++|+ +
T Consensus         2 ~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~   81 (179)
T d1xiya1           2 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDD   81 (179)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSE
T ss_pred             CCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCce
Confidence            57889998874          3334     35678878999999999999999999977 599999999999 57888 7


Q ss_pred             EEEEeCCChHHHHHHHHHHHhcccCCe-eEEEeeCCcchhhhhhhhcccccccCC
Q psy1172         217 VIALSCDSVESHHDWIKALVRDCILGL-LINLSVDDFKEVEGRSRRFQESLNTYG  270 (276)
Q Consensus       217 Vv~VS~D~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~~~  270 (276)
                      |++||+|+++.+++|.+.+      +. .+.+++|..++   ++++||+..+..+
T Consensus        82 I~~iSvnD~fv~~aW~~~~------~~~~I~~lsD~~g~---f~k~lg~~~d~~~  127 (179)
T d1xiya1          82 IYCITNNDIYVLKSWFKSM------DIKKIKYISDGNSS---FTDSMNMLVDKSN  127 (179)
T ss_dssp             EEEEESSCHHHHHHHHHHT------TCCSSEEEECTTSH---HHHHTTCEEECGG
T ss_pred             EEEEecCCHHHHHHHHhhc------CcceEEEeeCCchH---HHHhhhccccccc
Confidence            9999999999999999887      33 46899997664   7899999876543

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=4e-14  Score=110.63  Aligned_cols=89  Identities=12%  Similarity=0.086  Sum_probs=66.3

Q ss_pred             cCCCCeEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHHHhcccCCe
Q psy1172         166 GCQASLVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKALVRDCILGL  243 (276)
Q Consensus       166 ~~~G~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~~~~~~~~~  243 (276)
                      |.+|+.++++ ++ +||++||+|| |+||++|++|+|.|+++    .++++.|++++.+. ......+..+.      +.
T Consensus         6 d~~g~~~~~~-~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~----~~~~~~vi~i~~~~~~~~~~~~~~~~------~~   73 (136)
T d1z5ye1           6 DNPGQFYQAD-VLTQGKPVLLNVW-ATWCPTSRAEHQYLNQL----SAQGIRVVGMNYKDDRQKAISWLKEL------GN   73 (136)
T ss_dssp             SSTTCEECHH-HHHSSSCEEEEEE-CTTCHHHHHHHHHHHHH----HHTTCCEEEEEESCCHHHHHHHHHHH------CC
T ss_pred             cCCCcEecHH-HHcCCCEEEEEEE-cCcCCCcCccccchhhh----hhhhhhhcccccccchhhhHHHHHHc------CC
Confidence            3458888887 76 8999999999 99999999999999875    45789999999864 45555666555      33


Q ss_pred             -eEEEeeCCcchhhhhhhhcccccccC
Q psy1172         244 -LINLSVDDFKEVEGRSRRFQESLNTY  269 (276)
Q Consensus       244 -~~~~l~D~~~~~~~~a~~ygv~~~~~  269 (276)
                       .++++.|.++.   +++.||+..-++
T Consensus        74 ~~~~~~~d~~~~---~~~~~~v~~~P~   97 (136)
T d1z5ye1          74 PYALSLFDGDGM---LGLDLGVYGAPE   97 (136)
T ss_dssp             CCSEEEEESSCH---HHHHHTCCSBSE
T ss_pred             ccceeecccchh---HHHhcccCCcce
Confidence             34566676554   577788764443

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=107.47  Aligned_cols=89  Identities=12%  Similarity=0.053  Sum_probs=71.4

Q ss_pred             CCCcEEecCC-CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--------hHHHH
Q psy1172         159 LPGCSLLGCQ-ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--------VESHH  229 (276)
Q Consensus       159 aPdF~L~~~~-G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--------~~~~~  229 (276)
                      +-||++++.+ |+.++|+ +|+||++||++| |+||++|..+++.|+++|++|+++|++|+++..+.        .+..+
T Consensus         3 iydf~~~~l~~g~~vsL~-~ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~   80 (184)
T d2f8aa1           3 VYAFSARPLAGGEPVSLG-SLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEIL   80 (184)
T ss_dssp             GGGCEECBTTCSSCEEGG-GGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHH
T ss_pred             eeeeEEEECCCCCEecHH-HcCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhh
Confidence            5689999986 6789999 899999999999 99999999999999999999999999999998653        34556


Q ss_pred             HHHHHHHhcccCCeeEEEee
Q psy1172         230 DWIKALVRDCILGLLINLSV  249 (276)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~l~  249 (276)
                      +|++......+.+..||+..
T Consensus        81 ~f~~~~~~~~~~~~~f~~~~  100 (184)
T d2f8aa1          81 NSLKYVRPGGGFEPNFMLFE  100 (184)
T ss_dssp             HHHHHTSSCTTCCCSSEEBC
T ss_pred             hhhheeccccccccccccce
Confidence            66654322222255677754

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.9e-12  Score=99.09  Aligned_cols=99  Identities=18%  Similarity=0.269  Sum_probs=75.3

Q ss_pred             CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHHhCC----cEEEEEeCCC----hHHHHHH
Q psy1172         161 GCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFEQRT----CKVIALSCDS----VESHHDW  231 (276)
Q Consensus       161 dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~~~g----v~Vv~VS~D~----~~~~~~~  231 (276)
                      ||+|+|++|++++|+ +|+||++||+|| .+||| .|...++.+.+++++++..+    +.++.++.++    +....++
T Consensus         2 dF~L~d~~G~~vsl~-d~~GK~vll~F~-~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1wp0a1           2 PFSLTTHTGERKTDK-DYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANY   79 (160)
T ss_dssp             CCEEEETTSCEEEGG-GGTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHH
T ss_pred             CeEEEcCCCCEEcHH-HhCCCEEEEEEE-CCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHH
Confidence            799999999999999 899999999999 89997 69999999999999987765    4566667653    3344444


Q ss_pred             HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172         232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN  267 (276)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~  267 (276)
                      ....      +.++..+.+.........+.|++...
T Consensus        80 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (160)
T d1wp0a1          80 VKEF------SPKLVGLTGTREEVDQVARAYRVYYS  109 (160)
T ss_dssp             HHTT------CTTCEEEECCHHHHHHHHHHTTCCEE
T ss_pred             Hhhc------CCCcccccCchHHhhHHhhhhheeee
Confidence            4433      55677776665555566778886544

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=8.2e-11  Score=93.13  Aligned_cols=67  Identities=16%  Similarity=0.363  Sum_probs=58.7

Q ss_pred             CCCCceEEEeC--ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQ--DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~--~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      ++++||+++|.  +++++++||++.+..    |+  +.|+|||||++|+||+.+.++...+|+..+++++|++|+
T Consensus        84 ~~~~~~~l~~~~~~~~~~~~ygv~~~~~----g~--~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL~  152 (153)
T d1xvwa1          84 SGFTFPLLSDFWPHGAVSQAYGVFNEQA----GI--ANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT  152 (153)
T ss_dssp             HTCCSCEEECTTTTTHHHHHTTCEETTT----TE--ECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             hccceeEEecccccchhHHHhhhhhhcc----Cc--eeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhhc
Confidence            45999999985  789999999976543    54  679999999999999999988889999999999999986

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.11  E-value=4.5e-11  Score=95.14  Aligned_cols=71  Identities=18%  Similarity=0.382  Sum_probs=58.1

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC-CHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR-NFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r-~~~eilr~l~~lq   89 (276)
                      ++++||+++|++++++++||+........  ...+.|++||||++|+|++++.++...++ +++|+|+.+++|.
T Consensus        85 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~~--~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  156 (160)
T d2cx4a1          85 NRLAFNLLSDYNREVIKLYNVYHEDLKGL--KMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  156 (160)
T ss_dssp             HTCSSEEEECTTSHHHHHTTCEEEEETTE--EEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred             ceeeEEEeecCCcchHHHcCccccccccc--cccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence            45999999999999999999986533211  12357999999999999999987766555 8999999999886

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=1.4e-09  Score=85.51  Aligned_cols=64  Identities=14%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHH---hCCcEEEEEeCCCh
Q psy1172         160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFE---QRTCKVIALSCDSV  225 (276)
Q Consensus       160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~---~~gv~Vv~VS~D~~  225 (276)
                      +||+|+|.+|++++++ +|+||++||+|| .+||+ .|......+..+.+.+.   ...+.++.++.++.
T Consensus         7 ~dF~l~d~~G~~vsl~-~~~GK~vli~f~-~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEK-NLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA   74 (169)
T ss_dssp             CCCEEEETTSCEEEGG-GGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT
T ss_pred             CCeEEEeCCCCEECHH-HHCCCEEEEEEe-ccccCCcccchhhhhhhhhhhccccccccceeeeeccccc
Confidence            6999999999999999 999999999999 55565 56666666665555554   34567777776544

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.9e-10  Score=90.29  Aligned_cols=72  Identities=11%  Similarity=0.019  Sum_probs=52.4

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+.+||+|||++++++++|||+.+......+.....|.+|||++||+|++++.++...++++.+..++|++|
T Consensus        90 ~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~~~~s~a~~vL~~L  161 (161)
T d1hd2a_          90 AEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL  161 (161)
T ss_dssp             CTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHHC
T ss_pred             cccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCCCCcCcHHHHHhcC
Confidence            567899999999999999999876542100111123445555569999999999889999877666776654

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=3.1e-09  Score=85.14  Aligned_cols=68  Identities=21%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC-----CHHHHHHHHH
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR-----NFDEILRVLD   86 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r-----~~~eilr~l~   86 (276)
                      ....|++|+|+++.++++||+.........|. .+.|.+|||| ||+|+++++++...|+     ++++||+.|.
T Consensus        89 ~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~-~s~R~~~Iid-dG~I~~~~v~~~~~g~~~~~s~ae~vL~~L~  161 (163)
T d1nm3a2          89 KSENISFIPDGNGEFTEGMGMLVGKEDLGFGK-RSWRYSMLVK-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLA  161 (163)
T ss_dssp             TCTTSEEEECTTSHHHHHTTCEEECTTTTCCE-EECCEEEEEE-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred             ccCceeeeccCChHHHHHhhhhcccccccccc-ccceEEEEEe-CCEEEEEEEecCCCCCCccccCHHHHHHHHc
Confidence            34789999999999999999976443222232 3789999999 9999999998888887     5788888875

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.80  E-value=9.4e-09  Score=82.12  Aligned_cols=61  Identities=21%  Similarity=0.331  Sum_probs=48.6

Q ss_pred             eEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHHHHHhh
Q psy1172          22 PIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSL   88 (276)
Q Consensus        22 pllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr~l~~l   88 (276)
                      ++++| .+++++++||+..+..    ++  +.|+|||||++|+|++++..+ ....++++++|++|++|
T Consensus       101 ~~~~~~~~~~~~~~ygv~~~~~----~~--~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~L  163 (163)
T d1psqa_         101 IMLSDYFDHSFGRDYALLINEW----HL--LARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             EEEECTTTCHHHHHHTCBCTTT----CS--BCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred             eeeccccchhHHHhheeecccc----cc--eeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhcC
Confidence            44444 6889999999976543    33  679999999999999998644 55667999999999986

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=4.3e-09  Score=83.57  Aligned_cols=66  Identities=24%  Similarity=0.403  Sum_probs=51.0

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCC---CCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPA---TTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~---~~~r~~~eilr~l~~lq   89 (276)
                      ++++||+|+|++++++++||+.....   .|   ..|++||+ .||+|++.+....   .+..+++|+|++|++|+
T Consensus        87 ~~l~f~~L~D~~~~v~~~ygv~~~~~---~~---~~r~~~i~-~dg~i~~~~~~~~~~~~~~~~~~evl~~lk~l~  155 (156)
T d2a4va1          87 QNLPYHLLSDPKREFIGLLGAKKTPL---SG---SIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK  155 (156)
T ss_dssp             HTCSSEEEECTTCHHHHHHTCBSSSS---SC---BCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCccceeccchHHHHHHHcCCCcccc---CC---eeEEEEEE-ECCeEEEEEEEeCCCCCcchHHHHHHHHHHHhc
Confidence            45999999999999999999975432   12   45888888 6899999887322   23446789999999886

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=5.4e-08  Score=77.77  Aligned_cols=70  Identities=17%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             CCCCCceEEE-eCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHHHHHhh
Q psy1172          16 DGKLPYPIIA-DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSL   88 (276)
Q Consensus        16 ~~~l~fplls-D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr~l~~l   88 (276)
                      ..++.|+++. |.+..+++.||+...... ..|.  +.|++||||++|+|++.+..+ +...+|++++|++|+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~g~--~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a~  165 (166)
T d1xvqa_          94 AEGTENVMPASAFRDSFGEDYGVTIADGP-MAGL--LARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGAT  165 (166)
T ss_dssp             -----CEEEEECTTSSHHHHTTCBBCSST-TTTS--BCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHT
T ss_pred             HhCCcccccccchhHHHHHHhCeeeccCc-ccCc--eeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHhc
Confidence            4678887754 678899999999865432 1233  579999999999999998754 55667999999999886

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=98.60  E-value=2e-08  Score=80.12  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCC-C-CCHHHHHHHH
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT-G-RNFDEILRVL   85 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~-~-r~~~eilr~l   85 (276)
                      ...+|++++|++++++++||++.+......|. .+.|+||||| ||+|++++..+... . .+++++|+.|
T Consensus        94 ~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~-~~~R~tfiId-dg~I~~~~ve~~~~~~~s~ae~vLk~L  162 (162)
T d1tp9a1          94 ENKHVKFLADGSATYTHALGLELDLQEKGLGT-RSRRFALLVD-DLKVKAANIEGGGEFTVSSAEDILKDL  162 (162)
T ss_dssp             TCSSEEEEECTTSHHHHHTTCEEEETTTTSEE-EECCEEEEEE-TTEEEEEEECSSSCCSSCSHHHHHTTC
T ss_pred             cccccccccchhhHHHhhhhhccccccccCCc-EEEEEEEEEE-CCEEEEEEEECCCCCccCCHHHHHhcC
Confidence            55789999999999999999976433211111 2579999999 99999999855432 2 2588887653

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=5.9e-08  Score=77.41  Aligned_cols=65  Identities=23%  Similarity=0.257  Sum_probs=49.7

Q ss_pred             CCCCCceEEE--eCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHH
Q psy1172          16 DGKLPYPIIA--DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILR   83 (276)
Q Consensus        16 ~~~l~fplls--D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr   83 (276)
                      .++++||+++  |++++++++||+..... ...|+  +.|++||||++|+|++.++.+ ....+|++++|+
T Consensus        96 ~~~~~~~~~~~~d~~~~~~~~ygv~~~~~-~~~g~--~~ra~fvID~~G~I~y~~~~~~~~~~pd~d~~l~  163 (164)
T d1qxha_          96 AEGLNNVITLSTFRNAEFLQAYGVAIADG-PLKGL--AARAVVVIDENDNVIFSQLVDEITTEPDYEAALA  163 (164)
T ss_dssp             STTCTTEEEEECTTCHHHHHHTTCBBCSS-TTTTS--BCCEEEEECTTSBEEEEEECSBTTSCCCHHHHTC
T ss_pred             HhCCCcceeeccccchhhHHhcCeEeecC-cccCc--ccCEEEEEcCCCEEEEEEEcCCCCCCCCHHHhhc
Confidence            4678888876  45889999999975432 12244  579999999999999998855 456678988764

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.57  E-value=2.3e-09  Score=85.93  Aligned_cols=47  Identities=17%  Similarity=0.194  Sum_probs=40.0

Q ss_pred             EecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       173 ~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      .+. .++++.++|+|| ++|||+|+.++|.|+++++++.  ++.|..|++|
T Consensus        48 ~l~-~~~~~~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d   94 (166)
T d1z6na1          48 RLQ-RIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKG   94 (166)
T ss_dssp             HHH-TCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHH
T ss_pred             HHH-HhcCCeEEEEEE-eCcCccHHHHHHHHHHHHHHCC--CCcEEEEECc
Confidence            345 678999999999 9999999999999999999874  5677777765

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.52  E-value=1.2e-07  Score=77.31  Aligned_cols=80  Identities=16%  Similarity=0.301  Sum_probs=58.1

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC----CHHHHHHHHHhhcccc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR----NFDEILRVLDSLQLTD   92 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r----~~~eilr~l~~lq~~~   92 (276)
                      .+++||++.|++++++++||+.        +    ...+||||++|+|++.-......+.    ...++..+|++|-...
T Consensus        93 ~~~~~p~l~D~~~~~~~~~~v~--------~----~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~  160 (187)
T d2cvba1          93 HGIFFPYLLDETQEVAKAYRAL--------R----TPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  160 (187)
T ss_dssp             HTCCSCEEECSSSHHHHHTTCC--------E----ESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             hCCcceeeechhhhhccccccc--------c----eeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCC
Confidence            4599999999999999999985        3    3599999999999987654333222    2245667777664322


Q ss_pred             c------CCCCcCCCCCCCCce
Q psy1172          93 T------KKVATPVDWKVGMEI  108 (276)
Q Consensus        93 ~------~~~~~p~~w~~g~~~  108 (276)
                      .      ..+.|..+|+||..-
T Consensus       161 ~~~~~~t~~~GC~ik~~~~~~~  182 (187)
T d2cvba1         161 EPPLKEAPAIGCTIKWRPGNEP  182 (187)
T ss_dssp             CCCSSCCCCCSEECCCCTTCCC
T ss_pred             CCCccccCCCCcceeECCCCCc
Confidence            2      236788999999853

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.51  E-value=1.3e-08  Score=75.82  Aligned_cols=71  Identities=13%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             CCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         159 LPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       159 aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +.-+++.|.+.-...|. ...||++||.|| ++||++|+...|.|+++++++.+. +.++.|..|...   ...+++
T Consensus         5 ~~v~~i~~~~~~~~~l~-~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~i~~d~~~---~l~~~~   75 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLT-KASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFADN-VVVLKVDVDECE---DIAMEY   75 (111)
T ss_dssp             CCEEECCSHHHHHHHHH-HHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTTCH---HHHHHT
T ss_pred             CeEEEECCHHHHHHHHH-hcCCCEEEEEEE-CCcccCccccchhHHHHhhhcccc-eEEEEEEeecCc---chhhcC
Confidence            34455555443233344 457899999999 999999999999999999998643 778888887543   334455

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=4.5e-08  Score=73.26  Aligned_cols=75  Identities=16%  Similarity=0.061  Sum_probs=50.7

Q ss_pred             EecccCCCCeEEEEEEcCCCCcccHHHHHHHH---HHHHHHHhCCcEEEEEeCC-ChHHHHHHHHHHHhcccCCeeEEEe
Q psy1172         173 ILECSIPAFWGILFSHPSDFTPVCTTELARVL---QLIKEFEQRTCKVIALSCD-SVESHHDWIKALVRDCILGLLINLS  248 (276)
Q Consensus       173 ~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~---~~~~~~~~~gv~Vv~VS~D-~~~~~~~~~~~~~~~~~~~~~~~~l  248 (276)
                      .++ ..+||+++|.|| ++||++|+...|.+.   +..+.+  .++.++.+..+ +.....++.+++.-.   ++|..++
T Consensus        16 ~l~-~~~gK~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~v~---~~Pt~~~   88 (117)
T d2fwha1          16 ALV-EAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKAL--ADTVLLQANVTANDAQDVALLKHLNVL---GLPTILF   88 (117)
T ss_dssp             HHH-HHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHTTCC---SSSEEEE
T ss_pred             HHH-HcCCCeEEEEEe-cccCCcccccchhHHhHHHHHHhc--cceEEEecccccchhHHHHHHhhhehh---hceEEEE
Confidence            344 558999999999 999999999988874   333333  34666666553 334455666666222   5677777


Q ss_pred             eCCcch
Q psy1172         249 VDDFKE  254 (276)
Q Consensus       249 ~D~~~~  254 (276)
                      .|.++.
T Consensus        89 ~~~~G~   94 (117)
T d2fwha1          89 FDGQGQ   94 (117)
T ss_dssp             ECTTSC
T ss_pred             EeCCCc
Confidence            787665

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=98.41  E-value=4.4e-07  Score=72.24  Aligned_cols=67  Identities=24%  Similarity=0.334  Sum_probs=48.8

Q ss_pred             CCCCCc-eEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCC-CCCCCHHHHHHHH
Q psy1172          16 DGKLPY-PIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPA-TTGRNFDEILRVL   85 (276)
Q Consensus        16 ~~~l~f-pllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~-~~~r~~~eilr~l   85 (276)
                      .+++.| ++++| .++.+++.||+...... ..|+  +.|+|||||++|+|+++++.+. ....++++++++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~g~--~~Ra~fvID~~G~I~y~~~~~~~~~epd~~~~l~~L  163 (164)
T d1q98a_          94 AEGIENAKTVSTFRNHALHSQLGVDIQTGP-LAGL--TSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL  163 (164)
T ss_dssp             TTTCTTEEEEECTTCTHHHHHTTCEECSST-TTTS--BCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred             HhCCccccccccccchhHHHhhceecccCc-cccC--cccEEEEECCCCEEEEEEECCCCCCCCCHHHHHHhh
Confidence            366764 45555 47799999998654321 1244  6799999999999999998653 4456899998775

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-07  Score=71.52  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=40.7

Q ss_pred             cCCCCeEEEEEEcCC-------CCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         177 SIPAFWGILFSHPSD-------FTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~-------~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ..+||+|+|+|| |+       ||++|++.+|.+.++++++.+ ++.++.|++|..
T Consensus        18 ~~~gk~v~v~F~-a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~   71 (119)
T d1woua_          18 QHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEK   71 (119)
T ss_dssp             TTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCH
T ss_pred             HcCCCEEEEEEE-ecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCC
Confidence            568999999999 64       999999999999999888753 489999999764

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=1.1e-06  Score=67.24  Aligned_cols=58  Identities=14%  Similarity=0.082  Sum_probs=47.9

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||++.|++++++++||+.        ++    +++||||++|+|+++..  .....+.+++.+.|++|
T Consensus        77 ~~~~~p~~~d~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~v~~--~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          77 YNLNFTNLNDADGVIWARYNVP--------WQ----PAFVFYRADGTSTFVNN--PTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             HTCCSEEEECTTSHHHHHTTCC--------SS----SEEEEECTTSCEEEECC--SSSCCCHHHHHHHHHHC
T ss_pred             hccccceeeCchHHHHHHcCCC--------cC----CEEEEEeCCCeEEEEec--cCCCCCHHHHHHHHHcC
Confidence            4599999999999999999975        34    59999999999998754  23344789999999876

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=8.7e-07  Score=68.45  Aligned_cols=56  Identities=16%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++++||++.|.++++++.||+.        ++    +++||||++|+|++.+..+.+    .+++.+.|++|
T Consensus        88 ~~~~~p~~~D~~~~~~~~~~v~--------~~----P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~~l  143 (143)
T d2b5xa1          88 HDITQPIFVDSDHALTDAFENE--------YV----PAYYVFDKTGQLRHFQAGGSG----MKMLEKRVNRV  143 (143)
T ss_dssp             TTCCSCEEECSSCHHHHHTCCC--------CS----SEEEEECTTCBEEEEEESCST----THHHHHHHHHH
T ss_pred             hccCccccccCccchHHHcCCC--------cC----CEEEEECCCCEEEEEEECCCC----HHHHHHHHHhC
Confidence            5699999999999999999974        33    599999999999999886543    56777777664

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=6.8e-07  Score=68.42  Aligned_cols=56  Identities=16%  Similarity=0.290  Sum_probs=44.3

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL   85 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l   85 (276)
                      ++++||++.|.++++++.||+.        +    .|++||||++|+|++.+..+.+ .+.++|+|+.|
T Consensus        80 ~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~liD~~G~i~~~~~G~~~-~~~~~~~l~~l  135 (137)
T d1st9a_          80 YGVNFPVVLDTDRQVLDAYDVS--------P----LPTTFLINPEGKVVKVVTGTMT-ESMIHDYMNLI  135 (137)
T ss_dssp             TTCCSCEEEETTSHHHHHTTCC--------S----SCEEEEECTTSEEEEEEESCCC-HHHHHHHHHHH
T ss_pred             cCCCccccccccchhhhhhhcc--------c----cceEEEECCCCEEEEEEECCCC-HHHHHHHHHhh
Confidence            4589999999999999999984        3    3799999999999999986654 33445555444

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.19  E-value=1.2e-06  Score=63.93  Aligned_cols=45  Identities=9%  Similarity=0.026  Sum_probs=40.1

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .++++||.|| +.||++|....|.+.++.+++.+ .+.++.|+.|..
T Consensus        16 ~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~~   60 (105)
T d1nw2a_          16 GDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDEN   60 (105)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTC
T ss_pred             CCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECCCC
Confidence            4689999999 99999999999999999999864 489999998854

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.12  E-value=1.8e-06  Score=64.09  Aligned_cols=45  Identities=9%  Similarity=0.064  Sum_probs=39.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .++++||.|| +.||++|....|.++++.+++.+ .+.++.|++|..
T Consensus        23 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~   67 (112)
T d1ep7a_          23 EHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAV   67 (112)
T ss_dssp             HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTT
T ss_pred             cCCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeecccc
Confidence            4789999999 99999999999999999999854 488999998754

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.11  E-value=1.9e-06  Score=63.92  Aligned_cols=45  Identities=13%  Similarity=0.239  Sum_probs=38.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .+|++||.|| ++||++|+...|.|.++.+++  .++.++-|..|...
T Consensus        25 ~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~--~~~~~~~vd~d~~~   69 (113)
T d1ti3a_          25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKF--PNVTFLKVDVDELK   69 (113)
T ss_dssp             SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHC--SSEEEEEEETTTCH
T ss_pred             CCCEEEEEEE-cCccccchhhhhhhhhhhccC--CCceEEeeeeeccc
Confidence            4689999999 999999999999999999887  46788888887543

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.08  E-value=3e-06  Score=62.09  Aligned_cols=44  Identities=11%  Similarity=0.136  Sum_probs=38.5

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +++++|.|| +.||++|+...|.+.++.+++.+ .+.++.|+.|..
T Consensus        20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d~~   63 (108)
T d1thxa_          20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPN   63 (108)
T ss_dssp             SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTC
T ss_pred             CCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceeccccc
Confidence            579999999 99999999999999999988854 378999998853

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.08  E-value=2.5e-06  Score=63.44  Aligned_cols=45  Identities=9%  Similarity=0.104  Sum_probs=38.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .++++||.|| ++||++|+...|.|.++.++|  .++.++.|..|...
T Consensus        27 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~--~~~~~~~vd~~~~~   71 (114)
T d1xfla_          27 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKL--PNVLFLKVDTDELK   71 (114)
T ss_dssp             TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHC--SSEEEEEEETTTSH
T ss_pred             cCCeEEEEEE-cCCCCCccccccchhhhcccc--cccceeEEEeeece
Confidence            4689999999 999999999999999999887  46888888887643

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.07  E-value=6.2e-06  Score=63.15  Aligned_cols=57  Identities=11%  Similarity=0.110  Sum_probs=48.4

Q ss_pred             CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      +...||++.|+++++++.||+.        |+    +++||||++|+|++...++++    .+++...|+.++
T Consensus        84 ~~~~~~~~~D~~~~~~~~~~v~--------~~----P~~~liD~~G~i~~~~~G~~~----~~~~~~~l~~~~  140 (143)
T d2fy6a1          84 NYPKLPVVTDNGGTIAQSLNIS--------VY----PSWALIGKDGDVQRIVKGSIN----EAQALALIRDPN  140 (143)
T ss_dssp             CCTTSCEEECTTCHHHHHTTCC--------SS----SEEEEECTTSCEEEEEESCCC----HHHHHHHHHCTT
T ss_pred             CCcccccccccchHHHHHcCCC--------cc----CEEEEECCCCEEEEEEECCCC----HHHHHHHHHHHh
Confidence            4467999999999999999984        44    599999999999999987664    788888888765

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.3e-07  Score=72.55  Aligned_cols=78  Identities=9%  Similarity=0.076  Sum_probs=45.9

Q ss_pred             CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh--HHHHHHHHHHHhcccCCeeEEEeeCCcchh
Q psy1172         178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV--ESHHDWIKALVRDCILGLLINLSVDDFKEV  255 (276)
Q Consensus       178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~  255 (276)
                      -.||+++|+|| ++||++|+...+.+.+..+.. .....+|.|++|..  .....+   ....  -.++..++.|+++..
T Consensus        23 ~~~Kpvlv~F~-a~wC~~C~~~~~~~~~~~~~~-~~~~~fv~v~vd~~~~~~~~~~---~~~~--~~~Pt~~~~d~~G~~   95 (135)
T d1sena_          23 ASGLPLMVIIH-KSWCGACKALKPKFAESTEIS-ELSHNFVMVNLEDEEEPKDEDF---SPDG--GYIPRILFLDPSGKV   95 (135)
T ss_dssp             HHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHH-HHHTTSEEEEEEGGGSCSCGGG---CTTC--SCSSEEEEECTTSCB
T ss_pred             HcCCcEEEEEE-ecCCCCceecchhhhhhHHHH-HhcCCcEEEeCCCCcCHHHHHH---Hhhc--ccceeEEEECCCCeE
Confidence            36899999999 999999999999987754332 22234555555432  111111   1111  134666667776652


Q ss_pred             hhhhhhccc
Q psy1172         256 EGRSRRFQE  264 (276)
Q Consensus       256 ~~~a~~ygv  264 (276)
                        +++.+|.
T Consensus        96 --~~~~~g~  102 (135)
T d1sena_          96 --HPEIINE  102 (135)
T ss_dssp             --CTTCCCT
T ss_pred             --EEEecCC
Confidence              2444444

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.8e-06  Score=62.55  Aligned_cols=45  Identities=2%  Similarity=0.015  Sum_probs=39.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .++.+||.|| ++||++|....|.|.++.+++.  ++.++-|..|...
T Consensus        20 ~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~~~   64 (107)
T d1gh2a_          20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQ   64 (107)
T ss_dssp             TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSH
T ss_pred             CCCEEEEEEE-CCCCCCccccchhhhccccccc--cccccccccccch
Confidence            4788999999 9999999999999999999874  6888889887543

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.04  E-value=3.1e-06  Score=61.96  Aligned_cols=52  Identities=12%  Similarity=0.124  Sum_probs=42.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++++||.|| ++||++|....|.+.++.+++.. .+.++-|++|...   ...+++
T Consensus        18 s~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~~~---~l~~~~   69 (107)
T d1dbya_          18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESP---NVASEY   69 (107)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCH---HHHHHH
T ss_pred             CCCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEecccch---hHHHHh
Confidence            4689999999 99999999999999999888754 4788899988543   234455

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.03  E-value=3.4e-06  Score=61.30  Aligned_cols=51  Identities=14%  Similarity=0.118  Sum_probs=41.2

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +++++|.|| +.||++|....|.+.++.+++.++ +.++.|+.|...   ...+++
T Consensus        17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~d~~~---~l~~~~   67 (104)
T d1fb6a_          17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDEAP---GIATQY   67 (104)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTCH---HHHHHT
T ss_pred             CCcEEEEEE-cCccCCccccCchhHHHHHhhcCc-cceeEEecccch---hhhhhc
Confidence            678999999 999999999999999999998554 678888887533   344555

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.03  E-value=2.6e-06  Score=63.41  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=39.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++++++|.|| ++||++|+...|.|.++.+++  .++.++.|+.|..
T Consensus        25 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~d~~   68 (113)
T d1r26a_          25 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEF--PTVKFAKVDADNN   68 (113)
T ss_dssp             SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHC--TTSEEEEEETTTC
T ss_pred             CCCeEEEEEE-CCCCccchhhceecccccccc--ccccccccccccc
Confidence            4678999999 999999999999999999988  4799999999764

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=3.3e-06  Score=61.86  Aligned_cols=45  Identities=11%  Similarity=0.080  Sum_probs=38.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+++++|.|| +.||++|+...|.+.++.+++. ..+.++.|.+|..
T Consensus        19 ~~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~vd~d~~   63 (108)
T d2trxa_          19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQN   63 (108)
T ss_dssp             CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTTC
T ss_pred             CCCcEEEEEE-CCCCCCccccCcHHHHHHHHhh-cceeeeeccccch
Confidence            3689999999 9999999999999999988774 4578888888754

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.7e-06  Score=61.43  Aligned_cols=44  Identities=7%  Similarity=0.073  Sum_probs=37.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      ++|++||.|| ++||++|....|.|.++.+++.  ++.++-|..|..
T Consensus        19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d~~   62 (105)
T d2ifqa1          19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDC   62 (105)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTC
T ss_pred             CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeecccccC
Confidence            4689999999 9999999999999999988873  567788888753

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=97.93  E-value=7.8e-06  Score=60.54  Aligned_cols=43  Identities=14%  Similarity=0.227  Sum_probs=37.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      ++++++|.|| +.||++|....|.|.++.+++  .++.++.|+.|.
T Consensus        24 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~--~~v~~~~vd~~~   66 (112)
T d1f9ma_          24 GDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEY--LDVIFLKLDCNQ   66 (112)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEECSS
T ss_pred             CCCEEEEEEE-cCCCcchHHHHHHHhhhcccc--ccceeecccccc
Confidence            4579999999 999999999999999999998  468888888764

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6.4e-06  Score=63.46  Aligned_cols=45  Identities=9%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .+|+|||.|| +.||++|....|.|.++.++|.+ .+.++-|.+|..
T Consensus        21 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~~   65 (137)
T d1qgva_          21 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV   65 (137)
T ss_dssp             SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC
T ss_pred             CCCEEEEEEE-CCCCccchhcChHHHHHHHHhhc-cceEEEeecccc
Confidence            4689999999 99999999999999999999954 378888988754

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=8.1e-06  Score=60.92  Aligned_cols=53  Identities=6%  Similarity=0.100  Sum_probs=44.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++.++|.|| +.||++|....|.+.++.+.+.+.++.|..|+.+...   ....++
T Consensus        26 ~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~---~l~~~~   78 (119)
T d2b5ea4          26 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ---DLCMEH   78 (119)
T ss_dssp             TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH---HHHHHT
T ss_pred             cCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeeccchH---HHHHHh
Confidence            4678999999 9999999999999999999998778999999987543   344555

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.92  E-value=8.3e-06  Score=65.57  Aligned_cols=64  Identities=20%  Similarity=0.204  Sum_probs=47.8

Q ss_pred             ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCC--------C-CCHHHHHHHHH
Q psy1172          21 YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT--------G-RNFDEILRVLD   86 (276)
Q Consensus        21 fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~--------~-r~~~eilr~l~   86 (276)
                      ..+|+|++++++++|||..+......|. .+.|.++||| ||+|.+++..+...        . -+++.+|+.|+
T Consensus       105 I~~lsD~~g~f~k~lg~~~d~~~~g~G~-Rs~R~a~iid-dg~I~~~~vE~~~~~~~~~dp~~vSsae~iL~~L~  177 (179)
T d1xiya1         105 IKYISDGNSSFTDSMNMLVDKSNFFMGM-RPWRFVAIVE-NNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLK  177 (179)
T ss_dssp             SEEEECTTSHHHHHTTCEEECGGGTCCE-EECCEEEEEE-TTEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHH
T ss_pred             EEEeeCCchHHHHhhhcccccccCCCee-EEeeEEEEEE-CCEEEEEEEeCCCCCCCCCCCcccCCHHHHHHHHh
Confidence            4899999999999999986543222233 2679999999 99999999865332        1 36788888775

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=2.4e-05  Score=59.07  Aligned_cols=53  Identities=23%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             CCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          19 LPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        19 l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ..||++.|+++++++.||+.        |+    +.+||||++|+|+++. .    ..+.+++.+.|++|
T Consensus        81 ~~~~~l~D~~~~~~~~~~v~--------~~----P~~~iiD~~G~i~~~~-g----~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          81 KTFTQLADTDGSVWANFGVT--------QQ----PAYAFVDPHGNVDVVR-G----RMSQDELTRRVTAL  133 (134)
T ss_dssp             TTSEEEECTTCHHHHHTTCC--------SS----SEEEEECTTCCEEEEE-S----CCCHHHHHHHHHHH
T ss_pred             cceeEEeeccchHHHhcCCC--------cc----CeEEEECCCCeEEEEE-C----CCCHHHHHHHHHhh
Confidence            35999999999999999974        44    5899999999998743 2    23578899988876

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.85  E-value=1.2e-05  Score=58.26  Aligned_cols=45  Identities=13%  Similarity=0.096  Sum_probs=38.8

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE  226 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~  226 (276)
                      .+++++|.|| +.||++|....|.|.++.+++  .+..++-|+.|...
T Consensus        17 ~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~--~~~~~~~vd~d~~~   61 (103)
T d1syra_          17 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTY--TKMVFIKVDVDEVS   61 (103)
T ss_dssp             HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTTH
T ss_pred             CCCcEEEEEe-CCcccCcccccccchhhhhcc--cceEEEeeccccCc
Confidence            4679999999 999999999999999999988  45778888887543

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.83  E-value=1.1e-05  Score=56.37  Aligned_cols=43  Identities=16%  Similarity=0.154  Sum_probs=34.8

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      +|..|+.|| ++||++|+...|.+.++.+++. ..+.++.+..|.
T Consensus         2 ~kv~v~~F~-a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~~~~d~   44 (85)
T d1fo5a_           2 SKVKIELFT-SPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVME   44 (85)
T ss_dssp             CCEEEEEEE-CCCSSCCCTHHHHHHHHHHHCS-SSEEEEEEESSS
T ss_pred             CceEEEEEE-CCCCcChHhhhhhccccccccc-cccccccccccc
Confidence            478899999 9999999999999999888764 336667776654

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=1.4e-05  Score=60.68  Aligned_cols=43  Identities=23%  Similarity=0.259  Sum_probs=36.3

Q ss_pred             CCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172          19 LPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT   73 (276)
Q Consensus        19 l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~   73 (276)
                      ..++++.|+++++++.||+.        |+    +++||||++|+|++.+..+++
T Consensus        74 ~~~~~~~d~~~~~~~~~~v~--------~~----P~~~liD~~G~i~~~~~G~~~  116 (136)
T d1z5ye1          74 PYALSLFDGDGMLGLDLGVY--------GA----PETFLIDGNGIIRYRHAGDLN  116 (136)
T ss_dssp             CCSEEEEESSCHHHHHHTCC--------SB----SEEEEECTTSCEEEEEESCCC
T ss_pred             ccceeecccchhHHHhcccC--------Cc----ceEEEEcCCCEEEEEEEcCCC
Confidence            55668899999999999985        44    599999999999999886554

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.79  E-value=3.5e-05  Score=56.96  Aligned_cols=53  Identities=8%  Similarity=0.157  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC---hHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS---VESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~---~~~~~~~~~~~  235 (276)
                      .+++++|+|| +.|||+|+...|.|.++..+++   ..+..|+++.   ....+++.+++
T Consensus        25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~---~~v~~v~~~~~~~~~~~~~~~~~~   80 (115)
T d1zmaa1          25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLNDLQAFRSRY   80 (115)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHHHHHHHHHHH
T ss_pred             cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhh---hhhhhheeeccccccccccccccc
Confidence            4678999999 9999999999999999988874   3355556653   33445666666

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=6e-06  Score=63.36  Aligned_cols=45  Identities=13%  Similarity=0.176  Sum_probs=37.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~  224 (276)
                      .+++++|.|| +.||++|+...|.+.++.+.|++.+..|..+.+|.
T Consensus        29 ~~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~   73 (140)
T d2b5ea1          29 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDH   73 (140)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG
T ss_pred             CCCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeeec
Confidence            3678999999 99999999999999999999987766666666653

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.72  E-value=3.4e-05  Score=55.98  Aligned_cols=55  Identities=13%  Similarity=0.092  Sum_probs=36.3

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC---CcEEEEEeCCChHHHHHHHHHH
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR---TCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~---gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ...++.+|++|| +.|||+|+...|.++++..+....   .+.++.|+.+.   .....+++
T Consensus        12 ~~~~~v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~---~~~l~~~~   69 (107)
T d1a8la2          12 NIDQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE---YPEWADQY   69 (107)
T ss_dssp             TCCSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG---CHHHHHHT
T ss_pred             hcCCCeEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc---cccccccc
Confidence            344455566788 999999999999999987765432   24555555442   22445555

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.70  E-value=3.6e-06  Score=63.28  Aligned_cols=53  Identities=17%  Similarity=0.116  Sum_probs=37.4

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      +.++++|.|| +.|||+|+...|.|.++.++|.+..+.++.|..|   ...+..+++
T Consensus        29 ~~~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d---~~~~l~~~~   81 (119)
T d2es7a1          29 GDGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE---QSEAIGDRF   81 (119)
T ss_dssp             CSEEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECHH---HHHHHHHTT
T ss_pred             CCcEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC---CCHHHHHhc
Confidence            4567888899 9999999999999999999997666777777554   334455555

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=5.1e-06  Score=61.91  Aligned_cols=45  Identities=2%  Similarity=0.041  Sum_probs=37.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDS  224 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~  224 (276)
                      +++.++|.|| +.||++|+...|.+.++.+++...+  +.++.|+.+.
T Consensus        23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~   69 (120)
T d1meka_          23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE   69 (120)
T ss_dssp             HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT
T ss_pred             cCCcEEEEEE-CCCcCCccccchhhhhhcccccccccceeeecccccc
Confidence            4689999999 9999999999999999999997655  5566666654

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=2.1e-06  Score=65.86  Aligned_cols=53  Identities=19%  Similarity=0.174  Sum_probs=42.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ++++|+|.|| +.|||+|....|.|.++.++|.++.+.+..|..|   ...+..+++
T Consensus        35 ~~~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d---~~~~la~~~   87 (132)
T d2hfda1          35 PDGVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE---QSEAIGDRF   87 (132)
T ss_dssp             SEEEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHH---HHHHHHHHH
T ss_pred             CCcEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEec---CCHHHHHhh
Confidence            3467888899 9999999999999999999997777677777654   344566666

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.62  E-value=1.9e-05  Score=55.26  Aligned_cols=41  Identities=22%  Similarity=0.185  Sum_probs=34.8

Q ss_pred             EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         183 GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       183 vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      .|..|| +.||++|++..|.++++.+++.+ .+.++.|+.|..
T Consensus         4 ~v~~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~   44 (85)
T d1nhoa_           4 NIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVD   44 (85)
T ss_dssp             CEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTC
T ss_pred             EEEEEE-CCCCcchHHHHHHHhhhcccccc-cccccccccccc
Confidence            356688 99999999999999999999854 488999988754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.58  E-value=3.2e-05  Score=56.86  Aligned_cols=35  Identities=6%  Similarity=-0.033  Sum_probs=31.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT  214 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g  214 (276)
                      .+++++|.|| +.||++|++..|.+.++.+.+....
T Consensus        19 ~~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~~   53 (116)
T d2djja1          19 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSE   53 (116)
T ss_dssp             TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCEEEEEE-ecccccccccchHHHHHHHHHhccc
Confidence            4689999999 9999999999999999999997664

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.54  E-value=0.0001  Score=58.24  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             CCCCc-eEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          17 GKLPY-PIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        17 ~~l~f-pllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++| +++.|.++++++.|+......    |+    +++||||++|+|+..+..+...  +.+|+++.|++|-
T Consensus       112 ~~~~~~~~~~d~~~~~~~~~~~~~~v~----~~----P~~~lID~~G~I~~~~~G~~~~--~~~e~~~~l~al~  175 (176)
T d1jfua_         112 ANLTRLGYFNDQKAKVFQDLKAIGRAL----GM----PTSVLVDPQGCEIATIAGPAEW--ASEDALKLIRAAT  175 (176)
T ss_dssp             TTCCTTCCEECTTCHHHHHHHTTTCCS----SS----SEEEEECTTSBEEEEEESCCCT--TSHHHHHHHHHHH
T ss_pred             hCCcceeeeecchhHHHHHHhhhccCC----CC----CeEEEEcCCCEEEEEEECCCCC--ChHHHHHHHHHhc
Confidence            45775 589999999999998764322    33    5899999999999998865543  4589999999873

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.53  E-value=9.9e-05  Score=52.79  Aligned_cols=53  Identities=11%  Similarity=-0.037  Sum_probs=41.1

Q ss_pred             cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .++|...++.|+ +.|||+|+...|.|+++..++  ..+.+..|+.+...   ..++++
T Consensus        12 ~l~~~~~i~~F~-s~~C~~C~~~~p~~~~~a~~~--~~i~~~~vd~~~~~---~l~~~~   64 (96)
T d1hyua4          12 DIDGDFEFETYY-SLSCHNCPDVVQALNLMAVLN--PRIKHTAIDGGTFQ---NEITER   64 (96)
T ss_dssp             HCCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHC--TTEEEEEEETTTCH---HHHHHT
T ss_pred             hcCCCeEEEEEE-CCCCcchHHHHHHHHHHHHhC--CceEEEEEecccch---HHHhhc
Confidence            456778888899 999999999999999988764  56888888887532   344555

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.43  E-value=0.00028  Score=53.70  Aligned_cols=53  Identities=19%  Similarity=0.378  Sum_probs=40.5

Q ss_pred             CCc-eEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172          19 LPY-PIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS   87 (276)
Q Consensus        19 l~f-pllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~   87 (276)
                      ..| +++.|+++++++.||+.        |+    +++||||++|+|++.+..+.+    .+++...|++
T Consensus        85 ~~~~~~~~d~~~~~~~~~~v~--------~~----P~~~liD~~G~i~~~~~G~~~----~~~l~~~i~~  138 (144)
T d1knga_          85 NPFGRVGVDANGRASIEWGVY--------GV----PETFVVGREGTIVYKLVGPIT----PDNLRSVLLP  138 (144)
T ss_dssp             CCCSEEEEETTSHHHHHTTCC--------SS----CEEEEECTTSBEEEEEESCCC----HHHHHHTHHH
T ss_pred             CccccccccccchhhhhcCcc--------cc----ceEEEEcCCCeEEEEEeCCCC----HHHHHHHHHH
Confidence            455 48899999999999974        44    489999999999998875554    5555555543

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.82  E-value=0.00042  Score=51.41  Aligned_cols=54  Identities=2%  Similarity=-0.133  Sum_probs=38.2

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCCh--HHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDSV--ESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~~--~~~~~~~~~~  235 (276)
                      +.+.+||.|| +.||++|+.  |.+.++++++...  .+.+.-|..++.  ...++...++
T Consensus        18 ~~~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~   75 (122)
T d2c0ga2          18 RFPYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   75 (122)
T ss_dssp             TSSEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             cCCcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHh
Confidence            3578999999 999999994  8999999988653  355555665432  2334556665

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.80  E-value=0.0032  Score=49.07  Aligned_cols=71  Identities=10%  Similarity=0.169  Sum_probs=45.0

Q ss_pred             CCCCc---eEEEeCccHH-----HHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPY---PIIADQDRSL-----AVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~f---pllsD~~~~v-----a~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .++.|   .+|++.+.+.     ++.|++......+...+. -.+.+|||||+|+|+..+..  ....+.+++++.|++|
T Consensus        92 ~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-H~~~~~liD~~G~i~~~~~g--~~~~~~~~l~~dik~~  168 (172)
T d1xzoa1          92 YPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVI-HQSSFYLVGPDGKVLKDYNG--VENTPYDDIISDVKSA  168 (172)
T ss_dssp             SCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCC-SCCEEEEECTTSEEEEEEES--SSSCCHHHHHHHHHHH
T ss_pred             hccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEe-eeeEEEEEcCCCeEEEEEcC--CCCCCHHHHHHHHHHH
Confidence            44555   4788766553     455666543221111221 13689999999999987752  3345689999999988


Q ss_pred             cc
Q psy1172          89 QL   90 (276)
Q Consensus        89 q~   90 (276)
                      +.
T Consensus       169 ~~  170 (172)
T d1xzoa1         169 ST  170 (172)
T ss_dssp             TC
T ss_pred             Hh
Confidence            63

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00044  Score=52.68  Aligned_cols=38  Identities=13%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             cceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          52 CRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        52 ~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      .+++|||||+|+|+.++....+...+.++|++.|++|-
T Consensus       130 ~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1         130 SIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             CCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             cceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999998867777778899999998873

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0037  Score=47.83  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=45.3

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDD  251 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~  251 (276)
                      .+|+++|+|+ +.||++|+.--...   .++ .++-+..+.++.|+.++++ .+++.+.+.-.   ++|.-++.|+
T Consensus        41 ~~K~llV~~~-~~~C~~C~~m~~~v~~d~~V-~~~l~~~fV~~~v~~~~~e-~~~~~~~y~v~---~~Pti~~idp  110 (147)
T d2dlxa1          41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAV-KNIIREHFIFWQVYHDSEE-GQRYIQFYKLG---DFPYVSILDP  110 (147)
T ss_dssp             HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHH-HHHHHHTEEEEEEESSSHH-HHHHHHHHTCC---SSSEEEEECT
T ss_pred             cCCcEEEEEe-cCCCCchHHHHHhccCCHHH-HHHHhhheeEeeecccchh-hhhhhhheecC---ceeEEEEEeC
Confidence            5799999999 99999998654322   122 2222445888888888875 45677777333   5676666675

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.0029  Score=51.67  Aligned_cols=42  Identities=12%  Similarity=0.017  Sum_probs=36.5

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD  223 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D  223 (276)
                      ++.+|||.|| +.||+.|..-.+.|.+++.+|  ..+.++-|..+
T Consensus       119 ~~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~--~~vkF~ki~~~  160 (217)
T d2trcp_         119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEY--PMVKFCKIRAS  160 (217)
T ss_dssp             TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTC--TTSEEEEEEHH
T ss_pred             CCCeEEEEEE-cCCCCChhhhhhhHHHHhhhc--ccceEEEEccc
Confidence            4568999999 999999999999999999988  55888888664

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.63  E-value=0.012  Score=43.17  Aligned_cols=46  Identities=9%  Similarity=-0.137  Sum_probs=31.2

Q ss_pred             CCCeEEEEEEcCCCCcccH------HHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172         179 PAFWGILFSHPSDFTPVCT------TELARVLQLIKEFEQRTCKVIALSCDSV  225 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~------~el~~l~~~~~~~~~~gv~Vv~VS~D~~  225 (276)
                      +.+.++|.|| +.||+.|.      ...+.+....+.++..++.+..|+.+..
T Consensus        27 ~~~~~~V~Fy-apwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~   78 (124)
T d1a8ya1          27 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD   78 (124)
T ss_dssp             HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTS
T ss_pred             hCCeEEEEEE-CCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecc
Confidence            3468999999 99998542      2233444445555567788888988654

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.0026  Score=45.45  Aligned_cols=50  Identities=10%  Similarity=0.196  Sum_probs=34.0

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      ..-++|+.|+ +.|||+|..-.+.|.++..+|.   ..++-++.+.   ..++.+++
T Consensus        14 ~~~p~i~lft-~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~~---~~~l~~~y   63 (100)
T d1wjka_          14 RALPVLTLFT-KAPCPLCDEAKEVLQPYKDRFI---LQEVDITLPE---NSTWYERY   63 (100)
T ss_dssp             CCCCEEEEEE-CSSCHHHHHHHHHTSTTSSSSE---EEEEETTSST---THHHHHHS
T ss_pred             CCCCEEEEEE-CCCCCChHHHHHHHHHhhhhcc---eEEEeccccc---CHHHHHHh
Confidence            4557888888 9999999998888887655542   3444444332   24566667

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.016  Score=43.43  Aligned_cols=68  Identities=9%  Similarity=0.009  Sum_probs=42.2

Q ss_pred             CCCCceEEEeCcc---HHHHHhCCCCCCCCCC---CCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          17 GKLPYPIIADQDR---SLAVQLGMLDPVEKDS---KGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        17 ~~l~fpllsD~~~---~va~~yG~~~~~~~~~---~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      .+.+|..+.+...   .+++.|+.........   .+.-.-.+.+|||||+|+|+..+.    ...+.+++.+.|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~----~~~~~~~i~~~I~~~  156 (160)
T d1wp0a1          83 FSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFG----QNKRKGEIAASIATH  156 (160)
T ss_dssp             TCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEE----TTCCHHHHHHHHHHH
T ss_pred             cCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEEC----CCCCHHHHHHHHHHH
Confidence            4466776766443   5777887653221100   011001368999999999998763    234688888888765

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.04  E-value=0.14  Score=36.95  Aligned_cols=54  Identities=2%  Similarity=-0.025  Sum_probs=34.7

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEE-EEeCC--ChHHHHHHHHHH
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVI-ALSCD--SVESHHDWIKAL  235 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv-~VS~D--~~~~~~~~~~~~  235 (276)
                      +++.++|.|+ +.||..|..  |.+.++.+++++..-.++ -|.+.  +....+...+++
T Consensus        20 ~~~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~   76 (122)
T d1g7ea_          20 KSKFVLVKFD-TQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY   76 (122)
T ss_dssp             GSSEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHH
T ss_pred             hCCeEEEEEe-cCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhh
Confidence            4678999999 999988864  678888888876543333 24332  222334455554

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=88.96  E-value=0.11  Score=41.14  Aligned_cols=41  Identities=17%  Similarity=0.083  Sum_probs=27.2

Q ss_pred             CCeEEEEEEcCCCCcccHHHHHHHHH---HHHHHHhCCcEEEEEeC
Q psy1172         180 AFWGILFSHPSDFTPVCTTELARVLQ---LIKEFEQRTCKVIALSC  222 (276)
Q Consensus       180 gk~vvL~f~pa~~cp~C~~el~~l~~---~~~~~~~~gv~Vv~VS~  222 (276)
                      +++.|+-|| .-.||+|.+--|.|..   +.+.+ ..++.++-+.+
T Consensus       113 ~~~~VvEff-sy~Cp~C~~~e~~l~~~~~~~~~~-~~~v~~~~~~~  156 (195)
T d1un2a_         113 GAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKL-PEGVKMTKYHV  156 (195)
T ss_dssp             TCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSS-CTTCCEEEEEC
T ss_pred             CCceEEEEE-ecCCccccccchhhhHHHHHHhhc-CCCcEEEEEec
Confidence            456788888 8999999998886643   32232 34566665544

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.12  E-value=0.18  Score=37.01  Aligned_cols=30  Identities=7%  Similarity=0.159  Sum_probs=23.7

Q ss_pred             EEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCC-CcEE
Q psy1172          24 IADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA-KKLR   65 (276)
Q Consensus        24 lsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~-g~I~   65 (276)
                      +.|...++++.||+.        |+    .++||||++ |+|.
T Consensus        91 ~~d~~~~l~~~y~v~--------~~----Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_          91 QSEAVQKLSKHFNVE--------SI----PTLIGVDADSGDVV  121 (144)
T ss_dssp             GHHHHHHHHHHTTCC--------SS----SEEEEEETTTCCEE
T ss_pred             cccchhhHHHHcCCC--------cC----CEEEEEeCCCCEEE
Confidence            346677899999985        44    499999998 7885

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=84.50  E-value=0.23  Score=36.60  Aligned_cols=26  Identities=12%  Similarity=0.203  Sum_probs=20.5

Q ss_pred             cHHHHHhCCCCCCCCCCCCCCcccceEEEECCC-CcEEE
Q psy1172          29 RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA-KKLRL   66 (276)
Q Consensus        29 ~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~-g~I~~   66 (276)
                      .++++.||+.        |+    +++||||++ |+|..
T Consensus        98 ~~l~~~y~v~--------~~----Pt~~lID~~~G~Ii~  124 (144)
T d1o73a_          98 SELGKTFGVE--------SI----PTLITINADTGAIIG  124 (144)
T ss_dssp             HHHHHHHTCC--------SS----SEEEEEETTTCCEEE
T ss_pred             HHHHHHcCCC--------cC----CEEEEEECCCCEEEe
Confidence            4688889874        44    599999998 88865

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=83.91  E-value=1.5  Score=30.55  Aligned_cols=49  Identities=18%  Similarity=0.373  Sum_probs=36.4

Q ss_pred             EEEeC-ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172          23 IIADQ-DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ   89 (276)
Q Consensus        23 llsD~-~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq   89 (276)
                      +-.|. +..+++.||+.        ++    ++.+++ .+|++...+.     |.+.+++++.|++.+
T Consensus        62 vd~~~~~~~l~~~~~V~--------~~----Pt~~~~-k~G~~v~~~~-----G~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          62 LDCNQENKTLAKELGIR--------VV----PTFKIL-KENSVVGEVT-----GAKYDKLLEAIQAAR  111 (112)
T ss_dssp             EECSSTTHHHHHHHCCS--------SS----SEEEEE-ETTEEEEEEE-----SSCHHHHHHHHHHHH
T ss_pred             ccccccchhhHhheeec--------cC----CEEEEE-ECCEEEEEEe-----CCCHHHHHHHHHHcc
Confidence            33444 56899999985        44    477777 6999887766     567899999998765

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=83.22  E-value=0.38  Score=33.79  Aligned_cols=46  Identities=20%  Similarity=0.204  Sum_probs=32.4

Q ss_pred             CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172          27 QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD   86 (276)
Q Consensus        27 ~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~   86 (276)
                      .+.++++.||+.        |+    ++++++|++|++....  ...-.++.+++++.|+
T Consensus        70 ~~~~l~~~~~v~--------~~----Pt~~~~~~~G~~~~~~--~~~G~~~~~~~~~~l~  115 (117)
T d2fwha1          70 QDVALLKHLNVL--------GL----PTILFFDGQGQEHPQA--RVTGFMDAETFSAHLR  115 (117)
T ss_dssp             HHHHHHHHTTCC--------SS----SEEEEECTTSCBCGGG--CBCSCCCHHHHHHHHH
T ss_pred             HHHHHHhhhehh--------hc----eEEEEEeCCCcEEecc--cccccCCHHHHHHHHh
Confidence            455789999984        55    4899999999864322  2233368898888775

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.92  E-value=1.5  Score=32.36  Aligned_cols=47  Identities=11%  Similarity=0.020  Sum_probs=34.4

Q ss_pred             EEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC-cEEEEE
Q psy1172         172 VILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT-CKVIAL  220 (276)
Q Consensus       172 v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g-v~Vv~V  220 (276)
                      +.+. +-.++..|+.|+ .-.||+|.+--+.+.++..++.+.+ +.++-+
T Consensus        17 ~~~G-~~~a~v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~   64 (172)
T d1z6ma1          17 LHIG-ESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIK   64 (172)
T ss_dssp             EEES-CTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             Ceec-CCCCCEEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeec
Confidence            4455 334566677777 8999999999999999999887765 344433

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=82.38  E-value=0.26  Score=36.58  Aligned_cols=37  Identities=5%  Similarity=0.010  Sum_probs=25.7

Q ss_pred             CCCCceEEEeCcc--HHHHHhCCCCCCCCCCCCCCcccceEEEECCC-CcEE
Q psy1172          17 GKLPYPIIADQDR--SLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA-KKLR   65 (276)
Q Consensus        17 ~~l~fpllsD~~~--~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~-g~I~   65 (276)
                      .+..++.+.|.++  .+++.||+.        |+    +++||||++ |+|.
T Consensus        84 ~~~~~~~~~d~~~~~~l~~~y~v~--------~i----Pt~~lid~~~G~vi  123 (144)
T d1i5ga_          84 MPWLALPFEDRKGMEFLTTGFDVK--------SI----PTLVGVEADSGNII  123 (144)
T ss_dssp             CSSEECCTTCHHHHHHHHHHTTCC--------SS----SEEEEEETTTCCEE
T ss_pred             CCCCceeeEChHHHHHHHHHCCCC--------Cc----CEEEEEeCCCCEEE
Confidence            3445555556543  478889874        44    599999997 8885

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=82.06  E-value=0.96  Score=29.08  Aligned_cols=42  Identities=12%  Similarity=0.075  Sum_probs=27.9

Q ss_pred             EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172         187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL  235 (276)
Q Consensus       187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~  235 (276)
                      .|-..+||+|.+--..|.       .+|+...-+.+|......++.+..
T Consensus         5 iYt~~~C~~C~~ak~~L~-------~~~i~~~~~~i~~~~~~~~~~~~~   46 (74)
T d1r7ha_           5 LYTKPACVQCTATKKALD-------RAGLAYNTVDISLDDEARDYVMAL   46 (74)
T ss_dssp             EEECTTCHHHHHHHHHHH-------HTTCCCEEEETTTCHHHHHHHHHT
T ss_pred             EEeCCCChhHHHHHHHHH-------HcCCceEEEEccCCHHHHHHHHHh
Confidence            344899999997665544       578877777777544444554444

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=81.04  E-value=3.4  Score=28.02  Aligned_cols=54  Identities=13%  Similarity=0.206  Sum_probs=37.4

Q ss_pred             CCCceE-EEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172          18 KLPYPI-IADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL   88 (276)
Q Consensus        18 ~l~fpl-lsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l   88 (276)
                      ++.|-. =.|.+.++++.|++.        |+    ++++++. +|+....+...    ++.+++...|+..
T Consensus        51 ~~~~~~vd~d~~~~l~~~~~V~--------~~----Pt~~~~~-~G~~v~~~~G~----~~~~~l~~~i~~~  105 (107)
T d1dbya_          51 KLKCVKLNTDESPNVASEYGIR--------SI----PTIMVFK-GGKKCETIIGA----VPKATIVQTVEKY  105 (107)
T ss_dssp             TCEEEEEETTTCHHHHHHHTCC--------SS----CEEEEES-SSSEEEEEESC----CCHHHHHHHHHHH
T ss_pred             cceEEEEecccchhHHHHhccc--------ce----EEEEEEE-CCeEEEEEeCC----CCHHHHHHHHHHh
Confidence            445433 356778999999985        45    4777775 89887766532    4578888888753

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.52  E-value=0.78  Score=34.18  Aligned_cols=37  Identities=11%  Similarity=-0.102  Sum_probs=27.9

Q ss_pred             CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEE
Q psy1172         179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIAL  220 (276)
Q Consensus       179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~V  220 (276)
                      .+|.+|+.|. ---||+|++..+.+.++.    +.++.++-+
T Consensus        25 ~ak~tIv~Fs-D~~CpyC~~~~~~l~~~~----~~~~~~~~~   61 (156)
T d1eeja1          25 QEKHVITVFT-DITCGYCHKLHEQMADYN----ALGITVRYL   61 (156)
T ss_dssp             TCCEEEEEEE-CTTCHHHHHHHTTHHHHH----HTTEEEEEE
T ss_pred             CCCEEEEEEe-CCCCHHHHHHHHHHHHhh----ccCceEEEE
Confidence            4677888888 999999999888887764    355665554