Psyllid ID: psy11743
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 551 | 2.2.26 [Sep-21-2011] | |||||||
| Q641Z6 | 534 | EH domain-containing prot | yes | N/A | 0.535 | 0.552 | 0.701 | 1e-124 | |
| Q9WVK4 | 534 | EH domain-containing prot | yes | N/A | 0.535 | 0.552 | 0.701 | 1e-124 | |
| Q5RBP4 | 534 | EH domain-containing prot | yes | N/A | 0.537 | 0.554 | 0.699 | 1e-124 | |
| Q9H4M9 | 534 | EH domain-containing prot | yes | N/A | 0.537 | 0.554 | 0.699 | 1e-124 | |
| Q5E9R3 | 534 | EH domain-containing prot | yes | N/A | 0.537 | 0.554 | 0.699 | 1e-124 | |
| Q9EQP2 | 541 | EH domain-containing prot | no | N/A | 0.535 | 0.545 | 0.688 | 1e-122 | |
| Q9H223 | 541 | EH domain-containing prot | no | N/A | 0.535 | 0.545 | 0.685 | 1e-121 | |
| Q9NZN3 | 535 | EH domain-containing prot | no | N/A | 0.535 | 0.551 | 0.698 | 1e-116 | |
| Q8R491 | 535 | EH domain-containing prot | no | N/A | 0.535 | 0.551 | 0.698 | 1e-116 | |
| Q9QXY6 | 535 | EH domain-containing prot | no | N/A | 0.535 | 0.551 | 0.691 | 1e-115 |
| >sp|Q641Z6|EHD1_RAT EH domain-containing protein 1 OS=Rattus norvegicus GN=Ehd1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/305 (70%), Positives = 248/305 (81%), Gaps = 10/305 (3%)
Query: 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+SK+ PE+++TV EGL+++Y KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWVSKDARRKKEPELFQTVAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIR+L+E+DFPG+ IGPEPTTD FIAVM+ EG VP +
Sbjct: 61 VLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPGNALVVDPRR 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + +PVL ISI+DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFMCAQLPNPVLDSISIIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DKIR+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKIRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLFKD+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIINTPEVVRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAK 295
ARLAK
Sbjct: 301 ARLAK 305
|
Acts in early endocytic membrane fusion and membrane trafficking of recycling endosomes. Rattus norvegicus (taxid: 10116) |
| >sp|Q9WVK4|EHD1_MOUSE EH domain-containing protein 1 OS=Mus musculus GN=Ehd1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/305 (70%), Positives = 248/305 (81%), Gaps = 10/305 (3%)
Query: 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+SK+ PE+++TV EGL+++Y KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWVSKDARRKKEPELFQTVAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIR+L+E+DFPG+ IGPEPTTD FIAVM+ EG VP +
Sbjct: 61 VLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPGNALVVDPRR 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + +PVL ISI+DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFMCAQLPNPVLDSISIIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DKIR+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKIRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLFKD+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIINTPEVVRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAK 295
ARLAK
Sbjct: 301 ARLAK 305
|
Acts in early endocytic membrane fusion and membrane trafficking of recycling endosomes. Mus musculus (taxid: 10090) |
| >sp|Q5RBP4|EHD1_PONAB EH domain-containing protein 1 OS=Pongo abelii GN=EHD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/306 (69%), Positives = 248/306 (81%), Gaps = 10/306 (3%)
Query: 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+SK+ PE+++TV EGL+++Y KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWVSKDARRKKEPELFQTVAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIR+L+E+DFPG+ IGPEPTTD FIAVM+ EG VP +
Sbjct: 61 VLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPGNALVVDPRR 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + +PVL ISI+DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFMCAQLPNPVLDSISIIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DKIR+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKIRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLFKD+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIINTPEVVRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAKA 296
ARLAK
Sbjct: 301 ARLAKV 306
|
Acts in early endocytic membrane fusion and membrane trafficking of recycling endosomes. Pongo abelii (taxid: 9601) |
| >sp|Q9H4M9|EHD1_HUMAN EH domain-containing protein 1 OS=Homo sapiens GN=EHD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/306 (69%), Positives = 248/306 (81%), Gaps = 10/306 (3%)
Query: 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+SK+ PE+++TV EGL+++Y KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWVSKDARRKKEPELFQTVAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIR+L+E+DFPG+ IGPEPTTD FIAVM+ EG VP +
Sbjct: 61 VLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPGNALVVDPRR 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + +PVL ISI+DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFMCAQLPNPVLDSISIIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DKIR+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKIRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLFKD+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIINTPEVVRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAKA 296
ARLAK
Sbjct: 301 ARLAKV 306
|
Acts in early endocytic membrane fusion and membrane trafficking of recycling endosomes. Homo sapiens (taxid: 9606) |
| >sp|Q5E9R3|EHD1_BOVIN EH domain-containing protein 1 OS=Bos taurus GN=EHD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/306 (69%), Positives = 248/306 (81%), Gaps = 10/306 (3%)
Query: 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+SK+ PE+++TV EGL+++Y KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWVSKDARRKKEPELFQTVSEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIR+L+E+DFPG+ IGPEPTTD FIAVM+ EG VP +
Sbjct: 61 VLLVGQYSTGKTTFIRHLIEQDFPGMRIGPEPTTDSFIAVMHGPTEGVVPGNALVVDPRR 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + +PVL ISI+DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFMCAQLPNPVLDSISIIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DKIR+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKIRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLFKD+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIINTPEVVRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAKA 296
ARLAK
Sbjct: 301 ARLAKV 306
|
Acts in early endocytic membrane fusion and membrane trafficking of recycling endosomes. Bos taurus (taxid: 9913) |
| >sp|Q9EQP2|EHD4_MOUSE EH domain-containing protein 4 OS=Mus musculus GN=Ehd4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/308 (68%), Positives = 244/308 (79%), Gaps = 13/308 (4%)
Query: 1 MFSWMSKN-----EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDA 55
MFSWM + + +TV GL+ +Y+ K+LPLE+AY FH+FHSP EDADF+
Sbjct: 1 MFSWMGRQAGGRERSGGMDAVQTVTGGLRSLYQRKVLPLEEAYRFHEFHSPALEDADFEN 60
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS----- 110
KP ++LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVMY E EGS P +
Sbjct: 61 KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVD 120
Query: 111 ---PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW 167
P K +FGN+FLNRF CS + + VLK ISI+D+PGILSGEKQR+ RGYDF VL+W
Sbjct: 121 PKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILSGEKQRISRGYDFCQVLQW 180
Query: 168 FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALM 227
FAERVDRIILLFDAHKLDISDEF +I+A RG DDKIR+VLNKAD VD QQLMRVYGALM
Sbjct: 181 FAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALM 240
Query: 228 WSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDL 287
WSLGKV+ TPEV RVYIGSFW QPL + NRRLFE E QDLF+D+QSLP+ AA+RKLNDL
Sbjct: 241 WSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDL 300
Query: 288 IKRARLAK 295
IKRARLAK
Sbjct: 301 IKRARLAK 308
|
Plays a role in early endosomal transport. Mus musculus (taxid: 10090) |
| >sp|Q9H223|EHD4_HUMAN EH domain-containing protein 4 OS=Homo sapiens GN=EHD4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/308 (68%), Positives = 243/308 (78%), Gaps = 13/308 (4%)
Query: 1 MFSWMSKNEDS-----SPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDA 55
MFSWM + + +TV GL+ +Y K+LPLE+AY FH+FHSP EDADF+
Sbjct: 1 MFSWMGRQAGGRERAGGADAVQTVTGGLRSLYLRKVLPLEEAYRFHEFHSPALEDADFEN 60
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS----- 110
KP ++LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVMY E EGS P +
Sbjct: 61 KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVD 120
Query: 111 ---PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW 167
P K +FGN+FLNRF CS + + VLK IS++D+PGILSGEKQR+ RGYDF VL+W
Sbjct: 121 PKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISVIDSPGILSGEKQRISRGYDFCQVLQW 180
Query: 168 FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALM 227
FAERVDRIILLFDAHKLDISDEF +I+A RG DDKIR+VLNKAD VD QQLMRVYGALM
Sbjct: 181 FAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALM 240
Query: 228 WSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDL 287
WSLGKV+ TPEV RVYIGSFW QPL + NRRLFE E QDLF+D+QSLP+ AA+RKLNDL
Sbjct: 241 WSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDL 300
Query: 288 IKRARLAK 295
IKRARLAK
Sbjct: 301 IKRARLAK 308
|
Plays a role in early endosomal transport. Homo sapiens (taxid: 9606) |
| >sp|Q9NZN3|EHD3_HUMAN EH domain-containing protein 3 OS=Homo sapiens GN=EHD3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/305 (69%), Positives = 250/305 (81%), Gaps = 10/305 (3%)
Query: 1 MFSWMSKNED--SSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+ ++ PE+++TV EGLKK+YK+KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWLGTDDRRRKDPEVFQTVSEGLKKLYKSKLLPLEEHYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVM + EG +P +
Sbjct: 61 VLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDMEGIIPGNALVVDPKK 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + +PVL+ IS++DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DK+R+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLF+D+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAK 295
ARLAK
Sbjct: 301 ARLAK 305
|
Plays a role in endocytic transport. Homo sapiens (taxid: 9606) |
| >sp|Q8R491|EHD3_RAT EH domain-containing protein 3 OS=Rattus norvegicus GN=Ehd3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/305 (69%), Positives = 248/305 (81%), Gaps = 10/305 (3%)
Query: 1 MFSWMSKNE--DSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+ ++ PE+++TV EGLKK+YK KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWLGNDDRRKKDPEVFQTVSEGLKKLYKTKLLPLEEYYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVM + EG +P +
Sbjct: 61 VLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDVEGIIPGNALVVDPKK 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + + VL+ IS++DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFVCAQLPNAVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DK+R+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLFKD+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAK 295
ARLAK
Sbjct: 301 ARLAK 305
|
Plays a role in endocytic transport. Rattus norvegicus (taxid: 10116) |
| >sp|Q9QXY6|EHD3_MOUSE EH domain-containing protein 3 OS=Mus musculus GN=Ehd3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/305 (69%), Positives = 248/305 (81%), Gaps = 10/305 (3%)
Query: 1 MFSWMSKNE--DSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+ ++ PE+++TV +GLKK+YK KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWLGNDDRRKKDPEVFQTVSDGLKKLYKTKLLPLEEYYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVM + EG +P +
Sbjct: 61 VLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDVEGIIPGNALVVDPKK 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + + VL+ IS++DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFVCAQLPNAVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DK+R+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLF+D+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAK 295
ARLAK
Sbjct: 301 ARLAK 305
|
Plays a role in endocytic transport. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 551 | ||||||
| 91092710 | 532 | PREDICTED: similar to past-1 isoform 1 [ | 0.529 | 0.548 | 0.827 | 1e-146 | |
| 307167685 | 956 | EH domain-containing protein 1 [Camponot | 0.531 | 0.306 | 0.824 | 1e-146 | |
| 332026763 | 533 | EH domain-containing protein 1 [Acromyrm | 0.531 | 0.549 | 0.824 | 1e-146 | |
| 270014785 | 964 | hypothetical protein TcasGA2_TC010765 [T | 0.524 | 0.299 | 0.825 | 1e-146 | |
| 383863869 | 925 | PREDICTED: EH domain-containing protein | 0.529 | 0.315 | 0.823 | 1e-145 | |
| 307192600 | 534 | EH domain-containing protein 1 [Harpegna | 0.531 | 0.548 | 0.814 | 1e-144 | |
| 328791164 | 923 | PREDICTED: EH domain-containing protein | 0.531 | 0.317 | 0.807 | 1e-144 | |
| 380025150 | 944 | PREDICTED: EH domain-containing protein | 0.531 | 0.310 | 0.807 | 1e-143 | |
| 357624424 | 431 | past-1 [Danaus plexippus] | 0.529 | 0.677 | 0.820 | 1e-143 | |
| 157126105 | 536 | past-1 [Aedes aegypti] gi|108873382|gb|E | 0.529 | 0.544 | 0.824 | 1e-142 |
| >gi|91092710|ref|XP_966867.1| PREDICTED: similar to past-1 isoform 1 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/307 (82%), Positives = 276/307 (89%), Gaps = 15/307 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW++++ + + E+YE V+EGLK +YKNKLLPLEQ Y FHDFHSP ED+DFDAKP ++
Sbjct: 1 MFSWLTRDNNKT-EVYENVVEGLKTIYKNKLLPLEQHYQFHDFHSPQLEDSDFDAKPMIL 59
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFI+YLLERDFPGI IGPEPTTDRFIAVMYD++EG +P F
Sbjct: 60 LVGQYSTGKTTFIKYLLERDFPGIRIGPEPTTDRFIAVMYDDKEGIIPGNALVVDPKRQF 119
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL GKFGN+FLNR QCSLVNSPVL+ ISI+DTPGILSGEKQRVDRGYDFTGVLEWFA
Sbjct: 120 RPL---GKFGNAFLNRLQCSLVNSPVLQNISIIDTPGILSGEKQRVDRGYDFTGVLEWFA 176
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 177 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 236
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVNRRLFEDE+QDLFKDLQSLPRNAALRKLNDLIK
Sbjct: 237 LGKVLQTPEVARVYIGSFWDQPLRYDVNRRLFEDEKQDLFKDLQSLPRNAALRKLNDLIK 296
Query: 290 RARLAKA 296
RARLAK
Sbjct: 297 RARLAKV 303
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307167685|gb|EFN61188.1| EH domain-containing protein 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/307 (82%), Positives = 274/307 (89%), Gaps = 14/307 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW+++ E+S +++E V EGLKK+YK+KLLPLEQ Y FHDFHSP +D DFDAKP ++
Sbjct: 423 MFSWLNREENSKQDLFENVTEGLKKIYKSKLLPLEQYYQFHDFHSPQLDDPDFDAKPMIL 482
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFI+YLLER+FPGI IGPEPTTDRFIAVMYDE+EG +P F
Sbjct: 483 LVGQYSTGKTTFIKYLLEREFPGIRIGPEPTTDRFIAVMYDEKEGVIPGNALVVDPNKQF 542
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL KFGN+FLNRFQCS V SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA
Sbjct: 543 RPL---SKFGNAFLNRFQCSTVGSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 599
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 600 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 659
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVNRRLFEDEEQDLF+D+QSLPRNAALRKLNDLIK
Sbjct: 660 LGKVLQTPEVARVYIGSFWDQPLRYDVNRRLFEDEEQDLFRDMQSLPRNAALRKLNDLIK 719
Query: 290 RARLAKA 296
RARLAK
Sbjct: 720 RARLAKV 726
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026763|gb|EGI66872.1| EH domain-containing protein 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/307 (82%), Positives = 274/307 (89%), Gaps = 14/307 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW+S+ E+S +++E V EGLK++YK+KLLPLEQ Y FHDFHSP +D DFDAKP ++
Sbjct: 1 MFSWLSREENSKQDLFENVTEGLKRIYKSKLLPLEQYYQFHDFHSPQLDDPDFDAKPMIL 60
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFI+YLLER+FPGI IGPEPTTDRFIAVMYDE+EG +P F
Sbjct: 61 LVGQYSTGKTTFIKYLLEREFPGIRIGPEPTTDRFIAVMYDEKEGVIPGNALVVDPNKQF 120
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL KFGN+FLNRFQCS V SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA
Sbjct: 121 RPL---SKFGNAFLNRFQCSTVASPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 177
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 178 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 237
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVNRRLFEDEEQDLF+D+QSLPRNAALRKLNDLIK
Sbjct: 238 LGKVLQTPEVARVYIGSFWDQPLRYDVNRRLFEDEEQDLFRDMQSLPRNAALRKLNDLIK 297
Query: 290 RARLAKA 296
RARLAK
Sbjct: 298 RARLAKV 304
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270014785|gb|EFA11233.1| hypothetical protein TcasGA2_TC010765 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/304 (82%), Positives = 273/304 (89%), Gaps = 15/304 (4%)
Query: 4 WMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVG 63
W++++ + + E+YE V+EGLK +YKNKLLPLEQ Y FHDFHSP ED+DFDAKP ++LVG
Sbjct: 436 WLTRDNNKT-EVYENVVEGLKTIYKNKLLPLEQHYQFHDFHSPQLEDSDFDAKPMILLVG 494
Query: 64 QYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------FSPL 112
QYSTGKTTFI+YLLERDFPGI IGPEPTTDRFIAVMYD++EG +P F PL
Sbjct: 495 QYSTGKTTFIKYLLERDFPGIRIGPEPTTDRFIAVMYDDKEGIIPGNALVVDPKRQFRPL 554
Query: 113 DKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV 172
GKFGN+FLNR QCSLVNSPVL+ ISI+DTPGILSGEKQRVDRGYDFTGVLEWFAERV
Sbjct: 555 ---GKFGNAFLNRLQCSLVNSPVLQNISIIDTPGILSGEKQRVDRGYDFTGVLEWFAERV 611
Query: 173 DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGK 232
DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWSLGK
Sbjct: 612 DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWSLGK 671
Query: 233 VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRAR 292
VLQTPEVARVYIGSFWDQPL +DVNRRLFEDE+QDLFKDLQSLPRNAALRKLNDLIKRAR
Sbjct: 672 VLQTPEVARVYIGSFWDQPLRYDVNRRLFEDEKQDLFKDLQSLPRNAALRKLNDLIKRAR 731
Query: 293 LAKA 296
LAK
Sbjct: 732 LAKV 735
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383863869|ref|XP_003707402.1| PREDICTED: EH domain-containing protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/306 (82%), Positives = 271/306 (88%), Gaps = 14/306 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW+S+ E +++E V EGLKK+YK+KLLPLE Y FHDFHSP +D DFDAKP ++
Sbjct: 392 MFSWLSREEGGRQDLFENVTEGLKKIYKSKLLPLEHHYQFHDFHSPQLDDPDFDAKPMIL 451
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFI+YLLERDFPGI IGPEPTTDRFIAVMYDE+EG +P F
Sbjct: 452 LVGQYSTGKTTFIKYLLERDFPGIRIGPEPTTDRFIAVMYDEKEGVIPGNALVVDPNKQF 511
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL KFGN+FLNRFQCS V SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA
Sbjct: 512 RPL---SKFGNAFLNRFQCSTVASPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 568
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 569 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 628
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVN+RLFEDEEQDLFKD+QSLP+NAALRKLNDLIK
Sbjct: 629 LGKVLQTPEVARVYIGSFWDQPLRYDVNKRLFEDEEQDLFKDMQSLPKNAALRKLNDLIK 688
Query: 290 RARLAK 295
RARLAK
Sbjct: 689 RARLAK 694
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307192600|gb|EFN75788.1| EH domain-containing protein 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/307 (81%), Positives = 273/307 (88%), Gaps = 14/307 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW+S+ E+ +++E V +GLK++YK+KLLPLEQ Y FHDFHSP +D DFDAKP ++
Sbjct: 1 MFSWLSREENGKQDLFENVTDGLKRIYKSKLLPLEQHYQFHDFHSPQLDDPDFDAKPMIL 60
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFI+YLLER+FPGI IGPEPTTDRFIAVMYDE+EG +P F
Sbjct: 61 LVGQYSTGKTTFIKYLLEREFPGIRIGPEPTTDRFIAVMYDEKEGVIPGNALVVDPNKQF 120
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL KFGN+FLNRFQCS V SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA
Sbjct: 121 RPL---SKFGNAFLNRFQCSTVASPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 177
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 178 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 237
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVNRRLFEDEEQDLF+D+QSLP+NAALRKLNDLIK
Sbjct: 238 LGKVLQTPEVARVYIGSFWDQPLRYDVNRRLFEDEEQDLFRDMQSLPKNAALRKLNDLIK 297
Query: 290 RARLAKA 296
RARLAK
Sbjct: 298 RARLAKV 304
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328791164|ref|XP_003251526.1| PREDICTED: EH domain-containing protein 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/307 (80%), Positives = 271/307 (88%), Gaps = 14/307 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW+++ E +++E V +GLKK+YK+KLLPLEQ Y FHDFHSP +D DFDAKP ++
Sbjct: 390 MFSWLTREESGKQDLFENVADGLKKIYKSKLLPLEQHYQFHDFHSPQLDDPDFDAKPMIL 449
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFI+YLLERDFPGI IGPEPTTDRFIAVMY+E+EG +P F
Sbjct: 450 LVGQYSTGKTTFIKYLLERDFPGIRIGPEPTTDRFIAVMYNEKEGVIPGNALVVDPNKQF 509
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL KFGN+FLNRFQCS V SPVLKGISIVDTPGILSGEKQRVDRGYDFTGV+EWFA
Sbjct: 510 RPL---SKFGNAFLNRFQCSTVASPVLKGISIVDTPGILSGEKQRVDRGYDFTGVMEWFA 566
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEFRR IEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 567 ERVDRIILLFDAHKLDISDEFRRLIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 626
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVN+RLFEDEEQDLFKD+QSLP+NAALRKLNDLIK
Sbjct: 627 LGKVLQTPEVARVYIGSFWDQPLRYDVNKRLFEDEEQDLFKDMQSLPKNAALRKLNDLIK 686
Query: 290 RARLAKA 296
RARLAK
Sbjct: 687 RARLAKV 693
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380025150|ref|XP_003696342.1| PREDICTED: EH domain-containing protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/307 (80%), Positives = 271/307 (88%), Gaps = 14/307 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW+++ E +++E V +GLKK+YK+KLLPLEQ Y FHDFHSP +D DFDAKP ++
Sbjct: 411 MFSWLTREESGKQDLFENVADGLKKIYKSKLLPLEQHYQFHDFHSPQLDDPDFDAKPMIL 470
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFI+YLLERDFPGI IGPEPTTDRFIAVMY+E+EG +P F
Sbjct: 471 LVGQYSTGKTTFIKYLLERDFPGIRIGPEPTTDRFIAVMYNEKEGVIPGNALVVDPNKQF 530
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL KFGN+FLNRFQCS V SPVLKGISIVDTPGILSGEKQRVDRGYDFTGV+EWFA
Sbjct: 531 RPL---SKFGNAFLNRFQCSTVASPVLKGISIVDTPGILSGEKQRVDRGYDFTGVMEWFA 587
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEFRR IEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 588 ERVDRIILLFDAHKLDISDEFRRLIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 647
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVN+RLFEDEEQDLFKD+QSLP+NAALRKLNDLIK
Sbjct: 648 LGKVLQTPEVARVYIGSFWDQPLRYDVNKRLFEDEEQDLFKDMQSLPKNAALRKLNDLIK 707
Query: 290 RARLAKA 296
RARLAK
Sbjct: 708 RARLAKV 714
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357624424|gb|EHJ75206.1| past-1 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 252/307 (82%), Positives = 269/307 (87%), Gaps = 15/307 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW+ K E E E V+EGLK++YK KLLPLE Y FHDFHSP ED DFDAKP ++
Sbjct: 1 MFSWL-KKEGEKTESIENVVEGLKRIYKTKLLPLESHYQFHDFHSPQLEDPDFDAKPMIL 59
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFI+YLLERDFPGI IGPEPTTDRFIAVM+DE+EG +P F
Sbjct: 60 LVGQYSTGKTTFIKYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGMIPGNALVVDPKKQF 119
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL KFGN+FLNRFQCS VNSPVL+GISIVDTPGILSGEKQRVDRGYDFTGVLEWFA
Sbjct: 120 RPL---SKFGNAFLNRFQCSTVNSPVLRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 176
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRI+LLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 177 ERVDRIVLLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 236
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVNRRLFEDEEQDLF+D+QSLPRNAALRKLNDLIK
Sbjct: 237 LGKVLQTPEVARVYIGSFWDQPLRYDVNRRLFEDEEQDLFRDMQSLPRNAALRKLNDLIK 296
Query: 290 RARLAKA 296
RARLAK
Sbjct: 297 RARLAKV 303
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157126105|ref|XP_001654538.1| past-1 [Aedes aegypti] gi|108873382|gb|EAT37607.1| AAEL010403-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/307 (82%), Positives = 270/307 (87%), Gaps = 15/307 (4%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
MFSW+ K E + E+ E VL LKK+YK+KLLPLE+ Y FHDFHSP ED DFDAKP ++
Sbjct: 1 MFSWL-KRETKTEEVVENVLGELKKIYKSKLLPLEEHYSFHDFHSPKLEDPDFDAKPMIL 59
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----------F 109
LVGQYSTGKTTFIRYLLERDFPGI IGPEPTTDRFIAVMYD++EG +P F
Sbjct: 60 LVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMYDDKEGMIPGNALVVDPKKQF 119
Query: 110 SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
PL GK+GN+FLNRFQCS V SPVL+ ISIVDTPGILSGEKQRVDRGYDFTGVLEWFA
Sbjct: 120 RPL---GKYGNAFLNRFQCSTVPSPVLRAISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 176
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM+DHQQLMRVYGALMWS
Sbjct: 177 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMIDHQQLMRVYGALMWS 236
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKVLQTPEVARVYIGSFWDQPL +DVNRRLFEDEEQDLF+DLQSLPRNAALRKLNDLIK
Sbjct: 237 LGKVLQTPEVARVYIGSFWDQPLRYDVNRRLFEDEEQDLFRDLQSLPRNAALRKLNDLIK 296
Query: 290 RARLAKA 296
RARLAK
Sbjct: 297 RARLAKV 303
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 551 | ||||||
| FB|FBgn0016693 | 540 | Past1 "Putative Achaete Scute | 0.524 | 0.535 | 0.811 | 6e-146 | |
| WB|WBGene00004373 | 835 | rme-1 [Caenorhabditis elegans | 0.535 | 0.353 | 0.737 | 5.2e-136 | |
| UNIPROTKB|A5D7E1 | 535 | MGC139254 "MGC139254 protein" | 0.535 | 0.551 | 0.695 | 3e-129 | |
| ZFIN|ZDB-GENE-060810-22 | 613 | im:7147183 "im:7147183" [Danio | 0.535 | 0.481 | 0.696 | 1.7e-126 | |
| UNIPROTKB|E1BJV0 | 540 | EHD4 "Uncharacterized protein" | 0.535 | 0.546 | 0.687 | 1.7e-126 | |
| RGD|628883 | 541 | Ehd4 "EH-domain containing 4" | 0.535 | 0.545 | 0.694 | 2.1e-126 | |
| MGI|MGI:1919619 | 541 | Ehd4 "EH-domain containing 4" | 0.535 | 0.545 | 0.694 | 2.1e-126 | |
| UNIPROTKB|F1P719 | 541 | EHD4 "Uncharacterized protein" | 0.535 | 0.545 | 0.688 | 4.4e-126 | |
| UNIPROTKB|Q9H223 | 541 | EHD4 "EH domain-containing pro | 0.535 | 0.545 | 0.685 | 7.1e-126 | |
| ZFIN|ZDB-GENE-030131-9347 | 543 | ehd2 "EH-domain containing 2" | 0.535 | 0.543 | 0.679 | 7.4e-122 |
| FB|FBgn0016693 Past1 "Putative Achaete Scute Target 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 6.0e-146, Sum P(2) = 6.0e-146
Identities = 241/297 (81%), Positives = 262/297 (88%)
Query: 7 KNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYS 66
K E ++ E+ E V+ LKK+Y++KLLPLE+ Y FHDFHSP ED DFDAKP ++LVGQYS
Sbjct: 12 KREKNTQEVVENVIGELKKIYRSKLLPLEEHYQFHDFHSPKLEDPDFDAKPMILLVGQYS 71
Query: 67 TGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP-----FSPLDKF---GKF 118
TGKTTFIRYLLERDFPGI IGPEPTTDRFIAVMYD++EG +P P +F K+
Sbjct: 72 TGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMYDDKEGVIPGNALVVDPKKQFRPLSKY 131
Query: 119 GNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILL 178
GN+FLNRFQCS V SPVL ISIVDTPGILSGEKQR+DRGYDFTGVLEWFAERVDRIILL
Sbjct: 132 GNAFLNRFQCSSVASPVLNAISIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILL 191
Query: 179 FDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPE 238
FDAHKLDISDEFRRSIEAL+GHDDKIRI+LNKADM+DHQQLMRVYGALMWSLGKVLQTPE
Sbjct: 192 FDAHKLDISDEFRRSIEALKGHDDKIRIILNKADMIDHQQLMRVYGALMWSLGKVLQTPE 251
Query: 239 VARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAK 295
VARVYIGSFWDQPL D NRRLFEDEEQDLF+DLQSLPRNAALRKLNDLIKRARLAK
Sbjct: 252 VARVYIGSFWDQPLRFDANRRLFEDEEQDLFRDLQSLPRNAALRKLNDLIKRARLAK 308
|
|
| WB|WBGene00004373 rme-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1176 (419.0 bits), Expect = 5.2e-136, Sum P(2) = 5.2e-136
Identities = 225/305 (73%), Positives = 261/305 (85%)
Query: 1 MFSWMS--KNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+ ++ + E+ ETV EGL+K+YK KLLPLE+ + FHDFHSP +D DFDAKP
Sbjct: 281 MFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDFDAKPM 340
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK- 117
++LVGQYSTGKTTFIRYLLE DFPGI IGPEPTTDRFIAVM+ + EGS+P + L K
Sbjct: 341 ILLVGQYSTGKTTFIRYLLESDFPGIRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKK 400
Query: 118 -------FGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
FGN+FLNRFQCS + + VL+ ++IVDTPGILSGEKQR+DRGYDFTGVLEWFAE
Sbjct: 401 QFRALSGFGNAFLNRFQCSTLPNQVLESVTIVDTPGILSGEKQRIDRGYDFTGVLEWFAE 460
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF+R IEAL G++DKIRIVLNK+DMVDHQQLMRVYGALMWSL
Sbjct: 461 RVDRIILLFDAHKLDISDEFKRCIEALAGNEDKIRIVLNKSDMVDHQQLMRVYGALMWSL 520
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GKV +TPEV+RVY+GSFWD PL +D+NRRLF+DE+ DLF+DLQ+LPRNAALRKLNDLIKR
Sbjct: 521 GKVFKTPEVSRVYLGSFWDHPLHYDLNRRLFQDEQHDLFQDLQALPRNAALRKLNDLIKR 580
Query: 291 ARLAK 295
ARLAK
Sbjct: 581 ARLAK 585
|
|
| UNIPROTKB|A5D7E1 MGC139254 "MGC139254 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 212/305 (69%), Positives = 249/305 (81%)
Query: 1 MFSWMSKNED--SSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+ ++ PE+++TV +GLKK+Y+ KLLPLE+ Y FH+FHSP EDADFD KP
Sbjct: 1 MFSWLRSDDRRRKDPEVFQTVSDGLKKLYRTKLLPLEEHYRFHEFHSPALEDADFDNKPM 60
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS-------- 110
V+LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVM E EG +P +
Sbjct: 61 VLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGEMEGIIPGNALVVDPKK 120
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + +PVL+ IS++DTPGILSGEKQR+ RGYDF VLEWFAE
Sbjct: 121 PFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAE 180
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVDRIILLFDAHKLDISDEF I+AL+ H+DK+R+VLNKAD ++ QQLMRVYGALMWSL
Sbjct: 181 RVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSL 240
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GK++ TPEV RVYIGSFW PL+ NR+LFE EEQDLF+D+QSLPRNAALRKLNDLIKR
Sbjct: 241 GKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKR 300
Query: 291 ARLAK 295
ARLAK
Sbjct: 301 ARLAK 305
|
|
| ZFIN|ZDB-GENE-060810-22 im:7147183 "im:7147183" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1098 (391.6 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 213/306 (69%), Positives = 246/306 (80%)
Query: 1 MFSWMSKNE---DSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKP 57
MF+W++K + + +M++TV EGL+ +Y KLLPLE+ Y FHDFHSP E+ADF +KP
Sbjct: 68 MFTWVNKEQGGRNKEGDMFQTVTEGLQSLYTKKLLPLEETYLFHDFHSPALEEADFQSKP 127
Query: 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS------- 110
V+LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVMY++ EG VP +
Sbjct: 128 MVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDGFIAVMYNDNEGVVPGNALVVDPK 187
Query: 111 -PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169
P K FGNSFLNRF CS + + VL+ ISI+DTPGILSGEKQR+ RGYDF+ VL WF
Sbjct: 188 KPFRKLNSFGNSFLNRFICSQMPNQVLQSISIIDTPGILSGEKQRISRGYDFSEVLRWFG 247
Query: 170 ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWS 229
ERVDRIILLFDAHKLDISDEF +I A RG DDKIR+VLNKAD VD QQLMRVYGALMWS
Sbjct: 248 ERVDRIILLFDAHKLDISDEFSEAIRAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWS 307
Query: 230 LGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIK 289
LGKV+ TPEV RVY+GSFW +PL + NRRLFE E QDLF+D+Q LPRNAALRKLNDLIK
Sbjct: 308 LGKVINTPEVVRVYLGSFWAKPLQNAENRRLFEAETQDLFRDIQGLPRNAALRKLNDLIK 367
Query: 290 RARLAK 295
RARLAK
Sbjct: 368 RARLAK 373
|
|
| UNIPROTKB|E1BJV0 EHD4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1090 (388.8 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 211/307 (68%), Positives = 246/307 (80%)
Query: 1 MFSWMSKNED----SSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAK 56
MFSW+ + + + +TV GL+ +Y+ K+LPLE+AY FH+FHSP EDADF+ K
Sbjct: 1 MFSWLGRQAGGRGGTGADPVQTVTGGLRSLYQRKVLPLEEAYRFHEFHSPALEDADFENK 60
Query: 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS------ 110
P ++LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVMY E EG+ P +
Sbjct: 61 PMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGNTPGNALVVDP 120
Query: 111 --PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWF 168
P K G+FGN+FLNRF CS + + VLK ISI+D+PGILSGEKQR+ RGYDF VL+WF
Sbjct: 121 KKPFRKLGRFGNAFLNRFMCSQLPNEVLKSISIIDSPGILSGEKQRISRGYDFCQVLQWF 180
Query: 169 AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMW 228
AERVDRIILLFDAHKLDISDEF +I+A RG DDKIR+VLNKAD VD QQLMRVYGALMW
Sbjct: 181 AERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMW 240
Query: 229 SLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLI 288
SLGKV+ TPEV RVYIGSFW QPL + NRRLFE E QDLF+D+QSLP+ AA+RKLNDLI
Sbjct: 241 SLGKVINTPEVLRVYIGSFWTQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDLI 300
Query: 289 KRARLAK 295
KRARLAK
Sbjct: 301 KRARLAK 307
|
|
| RGD|628883 Ehd4 "EH-domain containing 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1088 (388.1 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 214/308 (69%), Positives = 246/308 (79%)
Query: 1 MFSWMSKN---EDSSPEM--YETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDA 55
MFSWM + + S M +TV GL+ +Y+ K+LPLE+AY FH+FHSP EDADF+
Sbjct: 1 MFSWMGRQAGGRERSGGMDAVQTVTGGLRSLYQRKVLPLEEAYRFHEFHSPALEDADFEN 60
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS----- 110
KP ++LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVMY E EGS P +
Sbjct: 61 KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVD 120
Query: 111 ---PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW 167
P K +FGN+FLNRF CS + + VLK ISI+D+PGILSGEKQR+ RGYDF VL+W
Sbjct: 121 PKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILSGEKQRISRGYDFCQVLQW 180
Query: 168 FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALM 227
FAERVDRIILLFDAHKLDISDEF +I+A RG DDKIR+VLNKAD VD QQLMRVYGALM
Sbjct: 181 FAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALM 240
Query: 228 WSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDL 287
WSLGKV+ TPEV RVYIGSFW QPL + NRRLFE E QDLF+D+QSLP+ AA+RKLNDL
Sbjct: 241 WSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDL 300
Query: 288 IKRARLAK 295
IKRARLAK
Sbjct: 301 IKRARLAK 308
|
|
| MGI|MGI:1919619 Ehd4 "EH-domain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1088 (388.1 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 214/308 (69%), Positives = 246/308 (79%)
Query: 1 MFSWMSKN---EDSSPEM--YETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDA 55
MFSWM + + S M +TV GL+ +Y+ K+LPLE+AY FH+FHSP EDADF+
Sbjct: 1 MFSWMGRQAGGRERSGGMDAVQTVTGGLRSLYQRKVLPLEEAYRFHEFHSPALEDADFEN 60
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS----- 110
KP ++LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVMY E EGS P +
Sbjct: 61 KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVD 120
Query: 111 ---PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW 167
P K +FGN+FLNRF CS + + VLK ISI+D+PGILSGEKQR+ RGYDF VL+W
Sbjct: 121 PKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILSGEKQRISRGYDFCQVLQW 180
Query: 168 FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALM 227
FAERVDRIILLFDAHKLDISDEF +I+A RG DDKIR+VLNKAD VD QQLMRVYGALM
Sbjct: 181 FAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALM 240
Query: 228 WSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDL 287
WSLGKV+ TPEV RVYIGSFW QPL + NRRLFE E QDLF+D+QSLP+ AA+RKLNDL
Sbjct: 241 WSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDL 300
Query: 288 IKRARLAK 295
IKRARLAK
Sbjct: 301 IKRARLAK 308
|
|
| UNIPROTKB|F1P719 EHD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1084 (386.6 bits), Expect = 4.4e-126, Sum P(2) = 4.4e-126
Identities = 212/308 (68%), Positives = 243/308 (78%)
Query: 1 MFSWMSKNEDS-----SPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDA 55
MFSWM + + +TV GL+ +Y K+LPLE+AY FH+FHSP EDADF+
Sbjct: 1 MFSWMGRQAGGRERAGGADAVQTVTGGLRSLYLRKVLPLEEAYRFHEFHSPALEDADFEN 60
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS----- 110
KP ++LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVMY E EGS P +
Sbjct: 61 KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVD 120
Query: 111 ---PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW 167
P K +FGN+FLNRF CS + + VLK ISI+D+PGILSGEKQR+ RGYDF VL+W
Sbjct: 121 PKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILSGEKQRISRGYDFCQVLQW 180
Query: 168 FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALM 227
FAERVDRIILLFDAHKLDISDEF +I+A RG DDKIR+VLNKAD VD QQLMRVYGALM
Sbjct: 181 FAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALM 240
Query: 228 WSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDL 287
WSLGKV+ TPEV RVYIGSFW QPL + NRRLFE E QDLF+D+QSLP+ AA+RKLNDL
Sbjct: 241 WSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDL 300
Query: 288 IKRARLAK 295
IKRARLAK
Sbjct: 301 IKRARLAK 308
|
|
| UNIPROTKB|Q9H223 EHD4 "EH domain-containing protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1083 (386.3 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
Identities = 211/308 (68%), Positives = 243/308 (78%)
Query: 1 MFSWMSKNEDS-----SPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDA 55
MFSWM + + +TV GL+ +Y K+LPLE+AY FH+FHSP EDADF+
Sbjct: 1 MFSWMGRQAGGRERAGGADAVQTVTGGLRSLYLRKVLPLEEAYRFHEFHSPALEDADFEN 60
Query: 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS----- 110
KP ++LVGQYSTGKTTFIRYLLE+DFPG+ IGPEPTTD FIAVMY E EGS P +
Sbjct: 61 KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVD 120
Query: 111 ---PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW 167
P K +FGN+FLNRF CS + + VLK IS++D+PGILSGEKQR+ RGYDF VL+W
Sbjct: 121 PKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISVIDSPGILSGEKQRISRGYDFCQVLQW 180
Query: 168 FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALM 227
FAERVDRIILLFDAHKLDISDEF +I+A RG DDKIR+VLNKAD VD QQLMRVYGALM
Sbjct: 181 FAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALM 240
Query: 228 WSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDL 287
WSLGKV+ TPEV RVYIGSFW QPL + NRRLFE E QDLF+D+QSLP+ AA+RKLNDL
Sbjct: 241 WSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDL 300
Query: 288 IKRARLAK 295
IKRARLAK
Sbjct: 301 IKRARLAK 308
|
|
| ZFIN|ZDB-GENE-030131-9347 ehd2 "EH-domain containing 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1062 (378.9 bits), Expect = 7.4e-122, Sum P(2) = 7.4e-122
Identities = 206/303 (67%), Positives = 240/303 (79%)
Query: 1 MFSWMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVM 60
M W KN +PE+ TV EGLK +Y+ KLLPLEQ Y FHDFHSP EDADFD KP V+
Sbjct: 1 MSRWGRKNVKKAPEVIRTVTEGLKSLYRKKLLPLEQYYGFHDFHSPSLEDADFDNKPMVL 60
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFS--------PL 112
+VGQYSTGKTTFI+YLLE+D PG IGPEPTTD F A+M+ + EG +P + P
Sbjct: 61 VVGQYSTGKTTFIKYLLEQDVPGSRIGPEPTTDCFTAIMHGDVEGLIPGNALIVDPNKPF 120
Query: 113 DKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV 172
K FGN+FLNRFQC+ + + VL+ ISI+DTPGILSG KQRV RGYDF VL WFAERV
Sbjct: 121 RKLNPFGNTFLNRFQCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERV 180
Query: 173 DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGK 232
DRIILLFDAHKL+ISDEF +I AL+G++DK+R+VLNKADMVD QQLMRVYGALMWSLGK
Sbjct: 181 DRIILLFDAHKLEISDEFSEAIGALKGNEDKLRVVLNKADMVDTQQLMRVYGALMWSLGK 240
Query: 233 VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRAR 292
V TPEV RVYIGSFW +PL+ NR+LFE EE+DLF D+Q+LPRNAALRKLNDL+KRAR
Sbjct: 241 VFGTPEVLRVYIGSFWSEPLMVTDNRKLFELEEEDLFADIQNLPRNAALRKLNDLVKRAR 300
Query: 293 LAK 295
L +
Sbjct: 301 LVR 303
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q5E9R3 | EHD1_BOVIN | No assigned EC number | 0.6993 | 0.5372 | 0.5543 | yes | N/A |
| Q5RBP4 | EHD1_PONAB | No assigned EC number | 0.6993 | 0.5372 | 0.5543 | yes | N/A |
| Q9H4M9 | EHD1_HUMAN | No assigned EC number | 0.6993 | 0.5372 | 0.5543 | yes | N/A |
| Q9WVK4 | EHD1_MOUSE | No assigned EC number | 0.7016 | 0.5353 | 0.5524 | yes | N/A |
| Q641Z6 | EHD1_RAT | No assigned EC number | 0.7016 | 0.5353 | 0.5524 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 551 | |||
| cd09913 | 241 | cd09913, EHD, Eps15 homology domain (EHD), C-termi | 1e-145 | |
| cd09913 | 241 | cd09913, EHD, Eps15 homology domain (EHD), C-termi | 5e-45 | |
| pfam00350 | 168 | pfam00350, Dynamin_N, Dynamin family | 2e-30 | |
| pfam00350 | 168 | pfam00350, Dynamin_N, Dynamin family | 7e-14 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 7e-13 | |
| cd09913 | 241 | cd09913, EHD, Eps15 homology domain (EHD), C-termi | 4e-10 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 7e-08 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 1e-06 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 4e-06 | |
| cd01850 | 275 | cd01850, CDC_Septin, CDC/Septin GTPase family | 0.001 | |
| cd00880 | 161 | cd00880, Era_like, E | 0.003 |
| >gnl|CDD|206740 cd09913, EHD, Eps15 homology domain (EHD), C-terminal domain | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-145
Identities = 162/240 (67%), Positives = 185/240 (77%), Gaps = 8/240 (3%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVP--------FS 110
V+ +GQYSTGK+TFI YLL +D+PG+ GPEPTTDRF VM+ E +G++P
Sbjct: 2 VLFLGQYSTGKSTFINYLLGQDYPGLRTGPEPTTDRFTVVMHGEDDGTIPGNALVVDPDK 61
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P KFGN FLN+F+ S + P+L+ ++IVDTPGILSGEKQR RGYDF V WFAE
Sbjct: 62 PFRGLSKFGNGFLNKFEGSTLPHPLLESVTIVDTPGILSGEKQRQSRGYDFNAVCRWFAE 121
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
R D I LLFD HKLDISDEFRR IE L+GH+ KIRIVLNKADMVD QQLMRVYGALMWSL
Sbjct: 122 RADLIFLLFDPHKLDISDEFRRVIEQLKGHESKIRIVLNKADMVDTQQLMRVYGALMWSL 181
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
KV+ TPEV RVYIGSFWDQP D NR+LF +EE DL +DL SLPRNAALRKLNDLIKR
Sbjct: 182 SKVINTPEVPRVYIGSFWDQPYEPDTNRKLFLEEEIDLLRDLNSLPRNAALRKLNDLIKR 241
|
Dynamin-like C-terminal Eps15 homology domain (EHD) proteins regulate endocytic events; they have been linked to a number of Rab proteins through their association with mutual effectors, suggesting a coordinate role in endocytic regulation. Eukaryotic EHDs comprise four members (EHD1-4) in mammals and single members in Caenorhabditis elegans (Rme-1), Drosophila melanogaster (Past1) as well as several eukaryotic parasites. EHD1 regulates trafficking of multiple receptors from the endocytic recycling compartment (ERC) to the plasma membrane; EHD2 regulates trafficking from the plasma membrane by controlling Rac1 activity; EHD3 regulates endosome-to-Golgi transport, and preserves Golgi morphology; EHD4 is involved in the control of trafficking at the early endosome and regulates exit of cargo toward the recycling compartment as well as late endocytic pathway. Rme-1, an ortholog of human EHD1, controls the recycling of internalized receptors from the endocytic recycling compartment to the plasma membrane. In D. melanogaster, deletion of the Past1 gene leads to infertility as well as premature death of adult flies. Arabidopsis thaliana also has homologs of EHD proteins (AtEHD1 and AtEHD2), possibly involved in regulating endocytosis and signaling. Length = 241 |
| >gnl|CDD|206740 cd09913, EHD, Eps15 homology domain (EHD), C-terminal domain | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 5e-45
Identities = 54/88 (61%), Positives = 69/88 (78%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368
V+ +GQYSTGK+TFI YLL +D+PG+ GPEPTTDRF VM+ E +G++PGNALVVDP K
Sbjct: 2 VLFLGQYSTGKSTFINYLLGQDYPGLRTGPEPTTDRFTVVMHGEDDGTIPGNALVVDPDK 61
Query: 369 QFRPLDKFGNSFLNRFQCSLVNSPVLKG 396
FR L KFGN FLN+F+ S + P+L+
Sbjct: 62 PFRGLSKFGNGFLNKFEGSTLPHPLLES 89
|
Dynamin-like C-terminal Eps15 homology domain (EHD) proteins regulate endocytic events; they have been linked to a number of Rab proteins through their association with mutual effectors, suggesting a coordinate role in endocytic regulation. Eukaryotic EHDs comprise four members (EHD1-4) in mammals and single members in Caenorhabditis elegans (Rme-1), Drosophila melanogaster (Past1) as well as several eukaryotic parasites. EHD1 regulates trafficking of multiple receptors from the endocytic recycling compartment (ERC) to the plasma membrane; EHD2 regulates trafficking from the plasma membrane by controlling Rac1 activity; EHD3 regulates endosome-to-Golgi transport, and preserves Golgi morphology; EHD4 is involved in the control of trafficking at the early endosome and regulates exit of cargo toward the recycling compartment as well as late endocytic pathway. Rme-1, an ortholog of human EHD1, controls the recycling of internalized receptors from the endocytic recycling compartment to the plasma membrane. In D. melanogaster, deletion of the Past1 gene leads to infertility as well as premature death of adult flies. Arabidopsis thaliana also has homologs of EHD proteins (AtEHD1 and AtEHD2), possibly involved in regulating endocytosis and signaling. Length = 241 |
| >gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-30
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 33/177 (18%)
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE-------------REG 105
+ +VG S GK++ + LL RD GP PTT R + + E ++G
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDIL--PRGPGPTTRRPLVLRLGEEPGAIPGAVKVEYKDG 58
Query: 106 SVPFSPLDKFGK-----------FGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQR 154
F + + G + + SP++ G+++VDTPG+ S
Sbjct: 59 LKKFEDFSELREEIEDETDKISGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVGD 118
Query: 155 VDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211
+ E + + D I+ + DA+ + E + + + VL K
Sbjct: 119 -------QDLTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTKD 168
|
Length = 168 |
| >gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-14
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPG--NALVVDP 366
+ +VG S GK++ + LL RD GP PTT R + + E G++PG D
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDIL--PRGPGPTTRRPLVLRLGEEPGAIPGAVKVEYKDG 58
Query: 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVY 408
K+F + + + P + +
Sbjct: 59 LKKFEDFSELREEIEDETDK----ISGTGKGISSEPIILEIL 96
|
Length = 168 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 7e-13
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 38/171 (22%)
Query: 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGN 120
+VG+ GK++ + LL + + P T D +
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV------------------------ 37
Query: 121 SFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFD 180
+ +VDTPG+ + D I+L+ D
Sbjct: 38 -------YVKELDKGKVKLVLVDTPGLDEFGGLGREELA------RLLLRGADLILLVVD 84
Query: 181 AHKLDISDEFRRSI-EALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
+ + ++ + I LR I +V NK D+++ +++ + +
Sbjct: 85 STDRESEEDAKLLILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAK 135
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206740 cd09913, EHD, Eps15 homology domain (EHD), C-terminal domain | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 396 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFED 428
KV+ TPEV RVYIGSFWDQP D NR+LF +
Sbjct: 182 SKVINTPEVPRVYIGSFWDQPYEPDTNRKLFLE 214
|
Dynamin-like C-terminal Eps15 homology domain (EHD) proteins regulate endocytic events; they have been linked to a number of Rab proteins through their association with mutual effectors, suggesting a coordinate role in endocytic regulation. Eukaryotic EHDs comprise four members (EHD1-4) in mammals and single members in Caenorhabditis elegans (Rme-1), Drosophila melanogaster (Past1) as well as several eukaryotic parasites. EHD1 regulates trafficking of multiple receptors from the endocytic recycling compartment (ERC) to the plasma membrane; EHD2 regulates trafficking from the plasma membrane by controlling Rac1 activity; EHD3 regulates endosome-to-Golgi transport, and preserves Golgi morphology; EHD4 is involved in the control of trafficking at the early endosome and regulates exit of cargo toward the recycling compartment as well as late endocytic pathway. Rme-1, an ortholog of human EHD1, controls the recycling of internalized receptors from the endocytic recycling compartment to the plasma membrane. In D. melanogaster, deletion of the Past1 gene leads to infertility as well as premature death of adult flies. Arabidopsis thaliana also has homologs of EHD proteins (AtEHD1 and AtEHD2), possibly involved in regulating endocytosis and signaling. Length = 241 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 7e-08
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 48/165 (29%)
Query: 58 TVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG 116
+ +VG++S GK+T + LL + P G PTT
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLP---TGVTPTT------------------------ 34
Query: 117 KFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRII 176
+ R+ LKG+ +VDTPG+ S + T + E F R D +I
Sbjct: 35 --AVITVLRYGL-------LKGVVLVDTPGLNSTIEHH-------TEITESFLPRADAVI 78
Query: 177 LLFDA-HKLDISD-EFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219
+ A L S+ EF + I L+ KI VLNK D++ ++L
Sbjct: 79 FVLSADQPLTESEREFLKEI--LKWSGKKIFFVLNKIDLLSEEEL 121
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 38/159 (23%), Positives = 55/159 (34%), Gaps = 48/159 (30%)
Query: 58 TVMLVGQYSTGKTTFIRYLLER------DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSP 111
V LVG+ + GK+T I L D+PG T D + V+ R+
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYPGT------TRDPILGVLGLGRQ------- 47
Query: 112 LDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAER 171
I +VDTPG++ G + F LE
Sbjct: 48 ---------------------------IILVDTPGLIEGASEG-KGVEGFNRFLEA-IRE 78
Query: 172 VDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210
D I+L+ DA + D+ E + I +VLNK
Sbjct: 79 ADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVLNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE 195
G+ ++D PG+ GE+ R DR Y + D ++ L DA ++ + +
Sbjct: 44 GDGLVLLDLPGV--GERGRRDREY--EELYRRLLPEADLVLWLLDADDRALAADHDFYLL 99
Query: 196 ALRGHDDKIRIVLNKADMV 214
L GHD + VLN+ D V
Sbjct: 100 PLAGHDAPLLFVLNQVDPV 118
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 308 TVMLVGQYSTGKTTFIRYLLERDF--------PGIHIGPEPTTDRFIAVMYDEREGSVPG 359
+M+VG+ GK+TFI L PG HI T + E V
Sbjct: 6 NIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHI---TKTVEIKISKAELEENGVKL 62
Query: 360 NALVVD 365
V+D
Sbjct: 63 KLTVID 68
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE 195
L + ++DTPG+ +R + + A+R D ++L+ D+ L +E + +
Sbjct: 45 LGPVVLIDTPGLDEEGGLGRERVEE---ARQV-ADRADLVLLVVDS-DLTPVEEEAK-LG 98
Query: 196 ALRGHDDKIRIVLNKADMVDHQQ 218
LR + +VLNK D+V +
Sbjct: 99 LLRERGKPVLLVLNKIDLVPESE 121
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 551 | |||
| KOG1954|consensus | 532 | 100.0 | ||
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 100.0 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 100.0 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 100.0 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 100.0 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 100.0 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.96 | |
| KOG1954|consensus | 532 | 99.93 | ||
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.93 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.91 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.91 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.88 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.83 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.82 | |
| KOG1424|consensus | 562 | 99.82 | ||
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.81 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.78 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.78 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.77 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.76 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.76 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.76 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.75 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.75 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.74 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.74 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.74 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.73 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.73 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.72 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.72 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.71 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.71 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.71 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.71 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.7 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.7 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.7 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.69 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.69 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.68 | |
| KOG2484|consensus | 435 | 99.68 | ||
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.68 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.68 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.67 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.67 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.67 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.67 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.66 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.66 | |
| KOG1423|consensus | 379 | 99.66 | ||
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.65 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.65 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.65 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.65 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.64 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.64 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.64 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.64 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.64 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.63 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.63 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.63 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.63 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.63 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.63 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.62 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.62 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.62 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.62 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 99.62 | |
| KOG1191|consensus | 531 | 99.62 | ||
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.62 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.62 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.62 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.61 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.61 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.61 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.61 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.61 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.61 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.61 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.61 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.6 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.6 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.6 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.6 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.6 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.6 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.59 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.59 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.59 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.59 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.59 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.59 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.59 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.59 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.59 | |
| KOG1191|consensus | 531 | 99.59 | ||
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.58 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.58 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.58 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.58 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.58 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.58 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.58 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.58 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.58 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.58 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.57 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.57 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.57 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.57 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.57 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.57 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.57 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.57 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.57 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.57 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.56 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.56 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.56 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.56 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.56 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.56 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.55 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.55 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.55 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.55 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.55 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.55 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.55 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.55 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.55 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.55 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.55 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.54 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.54 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.54 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.54 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.54 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.54 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.54 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.54 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.54 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.54 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.53 | |
| KOG2423|consensus | 572 | 99.53 | ||
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.53 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.53 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.53 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.53 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.53 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.52 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.52 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.52 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.52 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.52 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.52 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.52 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.52 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.52 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.51 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.51 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.51 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.51 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.51 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.5 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.5 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.5 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.5 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.5 | |
| KOG0098|consensus | 216 | 99.5 | ||
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.5 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.5 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.49 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.49 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.49 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.49 | |
| KOG0094|consensus | 221 | 99.49 | ||
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.49 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.49 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.49 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.49 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.49 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.49 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.49 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.49 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.48 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.48 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.48 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.48 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 99.48 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.48 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.48 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.47 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.47 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.47 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.46 | |
| KOG0092|consensus | 200 | 99.46 | ||
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.46 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.46 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.46 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.46 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.46 | |
| KOG1423|consensus | 379 | 99.46 | ||
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.46 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.45 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.45 | |
| KOG0084|consensus | 205 | 99.45 | ||
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.45 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.45 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.45 | |
| KOG2485|consensus | 335 | 99.45 | ||
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.44 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.44 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.44 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.43 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.43 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.43 | |
| KOG1489|consensus | 366 | 99.43 | ||
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.42 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.42 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.41 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.41 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.4 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.4 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.4 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.4 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.4 | |
| KOG0078|consensus | 207 | 99.4 | ||
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.4 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.38 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.38 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.38 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.37 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.36 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.36 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.36 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.36 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.36 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.35 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.35 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.35 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.34 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.33 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.33 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.33 | |
| KOG1490|consensus | 620 | 99.33 | ||
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.32 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.32 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.32 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.31 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.3 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.3 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.3 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.3 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.3 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.29 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.29 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.29 | |
| KOG0087|consensus | 222 | 99.28 | ||
| PRK01889 | 356 | GTPase RsgA; Reviewed | 99.27 | |
| KOG1145|consensus | 683 | 99.27 | ||
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.26 | |
| KOG0093|consensus | 193 | 99.26 | ||
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.26 | |
| KOG0095|consensus | 213 | 99.26 | ||
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.24 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.24 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.23 | |
| KOG0086|consensus | 214 | 99.22 | ||
| KOG0462|consensus | 650 | 99.22 | ||
| KOG0080|consensus | 209 | 99.22 | ||
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.21 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.2 | |
| KOG0073|consensus | 185 | 99.2 | ||
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.2 | |
| KOG0394|consensus | 210 | 99.2 | ||
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.2 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.19 | |
| KOG0091|consensus | 213 | 99.19 | ||
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.17 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.17 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.17 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.16 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.15 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.13 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.12 | |
| KOG0448|consensus | 749 | 99.11 | ||
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.1 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.09 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.08 | |
| KOG1144|consensus | 1064 | 99.08 | ||
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.07 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.07 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.06 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.06 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.05 | |
| KOG0079|consensus | 198 | 99.03 | ||
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.02 | |
| PRK13768 | 253 | GTPase; Provisional | 99.01 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.0 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.0 | |
| KOG0097|consensus | 215 | 98.99 | ||
| KOG0395|consensus | 196 | 98.98 | ||
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.97 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.95 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.95 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.95 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 98.94 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.94 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 98.93 | |
| KOG0458|consensus | 603 | 98.93 | ||
| KOG0410|consensus | 410 | 98.93 | ||
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.92 | |
| KOG1532|consensus | 366 | 98.91 | ||
| KOG2486|consensus | 320 | 98.91 | ||
| KOG0081|consensus | 219 | 98.9 | ||
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 98.89 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.88 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 98.88 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 98.88 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.87 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 98.87 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.86 | |
| KOG2655|consensus | 366 | 98.86 | ||
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 98.86 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.86 | |
| KOG0088|consensus | 218 | 98.86 | ||
| COG1084 | 346 | Predicted GTPase [General function prediction only | 98.85 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.84 | |
| KOG0461|consensus | 522 | 98.84 | ||
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.84 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.84 | |
| KOG0075|consensus | 186 | 98.83 | ||
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 98.82 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.82 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.81 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 98.81 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 98.8 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 98.8 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 98.79 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 98.79 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 98.79 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.78 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.77 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 98.76 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 98.76 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.76 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 98.73 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.73 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 98.72 | |
| KOG4252|consensus | 246 | 98.71 | ||
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 98.71 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.7 | |
| KOG0083|consensus | 192 | 98.69 | ||
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 98.69 | |
| KOG0076|consensus | 197 | 98.69 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.67 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 98.65 | |
| KOG0468|consensus | 971 | 98.64 | ||
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 98.64 | |
| KOG0090|consensus | 238 | 98.63 | ||
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 98.62 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.62 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.62 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.61 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.59 | |
| KOG1547|consensus | 336 | 98.58 | ||
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 98.58 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.58 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 98.57 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 98.57 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.55 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 98.55 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.55 | |
| KOG1486|consensus | 364 | 98.55 | ||
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.54 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.53 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.51 | |
| KOG0070|consensus | 181 | 98.5 | ||
| PTZ00099 | 176 | rab6; Provisional | 98.5 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 98.5 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.49 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.49 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 98.49 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.49 | |
| KOG3883|consensus | 198 | 98.48 | ||
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 98.48 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.48 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.47 | |
| KOG0447|consensus | 980 | 98.47 | ||
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.47 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 98.45 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 98.44 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 98.44 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.44 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 98.44 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 98.42 | |
| KOG0074|consensus | 185 | 98.42 | ||
| KOG0077|consensus | 193 | 98.41 | ||
| KOG1707|consensus | 625 | 98.41 | ||
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.4 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.4 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.39 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 98.39 | |
| CHL00071 | 409 | tufA elongation factor Tu | 98.38 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 98.37 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.37 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 98.37 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 98.36 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 98.35 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.35 | |
| KOG0393|consensus | 198 | 98.34 | ||
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 98.34 | |
| KOG0071|consensus | 180 | 98.33 | ||
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 98.33 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 98.33 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.33 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.33 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 98.33 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 98.32 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 98.32 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.32 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 98.32 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 98.32 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.3 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 98.3 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 98.29 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 98.29 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.28 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 98.28 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 98.28 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 98.28 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 98.27 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.27 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 98.27 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 98.27 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 98.27 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 98.26 | |
| KOG1489|consensus | 366 | 98.26 | ||
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 98.26 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.26 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 98.26 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 98.26 | |
| KOG0460|consensus | 449 | 98.25 | ||
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 98.24 | |
| KOG0467|consensus | 887 | 98.24 | ||
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 98.24 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.23 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 98.23 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 98.23 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.22 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 98.22 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 98.21 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 98.21 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 98.21 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 98.21 | |
| KOG0466|consensus | 466 | 98.21 | ||
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 98.21 | |
| KOG1491|consensus | 391 | 98.2 | ||
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 98.19 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 98.19 | |
| PLN03118 | 211 | Rab family protein; Provisional | 98.19 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 98.19 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.19 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 98.18 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 98.18 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.18 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 98.18 | |
| KOG1487|consensus | 358 | 98.18 | ||
| PLN03127 | 447 | Elongation factor Tu; Provisional | 98.17 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 98.17 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 98.16 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 98.16 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 98.16 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.16 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 98.15 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 98.15 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.14 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 98.14 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 98.14 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 98.14 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 98.14 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 98.14 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.13 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 98.12 | |
| KOG1424|consensus | 562 | 98.12 | ||
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 98.12 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 98.12 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 98.12 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 98.12 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 98.11 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 98.11 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 98.11 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 98.1 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 98.09 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 98.09 |
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-67 Score=511.80 Aligned_cols=384 Identities=73% Similarity=1.211 Sum_probs=360.4
Q ss_pred CccccCCC--CCCChhHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccCCCCEEEEEeccCCChHHHHHHHHh
Q psy11743 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
|+||+... +..+.+..+.+.+.|++||.++++|||+.|+|++|++|.+++++++++|+|+++|++++|||||||+|++
T Consensus 1 ~~~w~~~d~~~k~~~~~~~tv~~glkrlY~~kl~PLE~~Yrf~df~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle 80 (532)
T KOG1954|consen 1 MFSWLGKDSSRKKNPEVLQTVSEGLKRLYKQKLLPLEELYRFHDFHSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLE 80 (532)
T ss_pred CCcccccchhccCCcchHHHHHHHHHHHHHHhcccHHHHHhhhhcccccccCcccccCceEEEEeccccchhHHHHHHHh
Confidence 78999865 3378889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccceEEEEEeCCCccccCC--------CCcccccccccccccceeEEecCCCCccCeEEEeCCCCCCC
Q psy11743 79 RDFPGIHIGPEPTTDRFIAVMYDEREGSVPF--------SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSG 150 (551)
Q Consensus 79 ~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g--------~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~ 150 (551)
.++++++++|+||||+|.++|+|++++.++| .+|+.+..||++|+++|.|.++|+++|.++++|||||+.++
T Consensus 81 ~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsg 160 (532)
T KOG1954|consen 81 QDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSG 160 (532)
T ss_pred CCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCChhhhhheeeeccCccccc
Confidence 9999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHc
Q psy11743 151 EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l 230 (551)
.+|+++++++|..+++|+++++|.|++++|++++++++++.+++..++.+...+.+|+||+|.++.+++++++++++|++
T Consensus 161 eKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWsl 240 (532)
T KOG1954|consen 161 EKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSL 240 (532)
T ss_pred chhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEE
Q psy11743 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVM 310 (551)
Q Consensus 231 ~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (551)
|.+.+.|.++.+|++|+|..++....++++|+.+.++|+..++.+++....+++|++++++++++
T Consensus 241 gkv~nTpev~rvYigSfw~hPl~~~a~rrLfeaee~dl~rDlq~lp~ka~~rKind~ikrAr~ak--------------- 305 (532)
T KOG1954|consen 241 GKVMNTPEVSRVYIGSFWDHPLQDPANRRLFEAEEQDLFRDLQTLPRKAALRKLNDLIKRARLAK--------------- 305 (532)
T ss_pred hhhcCCCcceeEEeeccccCcccCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999876543
Q ss_pred EEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhhhhhccc
Q psy11743 311 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCSLVN 390 (551)
Q Consensus 311 ~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (551)
T Consensus 306 -------------------------------------------------------------------------------- 305 (532)
T KOG1954|consen 306 -------------------------------------------------------------------------------- 305 (532)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchhhhccchHHHHHHHHHHHHH
Q psy11743 391 SPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFGKEGKKKELIKKLDEIYK 470 (551)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 470 (551)
++.++.+.|.+.+|.++++.++.++|++.+.
T Consensus 306 ---------------------------------------------vHAyiis~lkkemp~~~gk~~~kk~lidnl~---- 336 (532)
T KOG1954|consen 306 ---------------------------------------------VHAYIISCLKKEMPSVFGKEKKKKRLIDNLI---- 336 (532)
T ss_pred ---------------------------------------------HHHHHHHHHHHhhhhhhcchhhHHHHHHhHH----
Confidence 5667777777777776665555555555554
Q ss_pred HHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCCCCCccchHHHHHHHHHhHhhhhhc
Q psy11743 471 QIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTKFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
+||.+++.+++|+.+|||+++.++.+|+..||++|..+++++++++|.++++|||+|
T Consensus 337 -----------------------~iy~~l~re~~Is~gDfPd~~~mre~l~~~df~kF~~lkpklle~vD~mla~di~~L 393 (532)
T KOG1954|consen 337 -----------------------DIYEKLQREHNISPGDFPDVEKMREFLQTQDFSKFKPLKPKLLEVVDDMLAYDIAEL 393 (532)
T ss_pred -----------------------HHHHHHhHhhcCCCcCCCCHHHHHHHHhcCChhhccccCccHHHHHHHHHHhhHHHH
Confidence 477788899999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy11743 551 L 551 (551)
Q Consensus 551 ~ 551 (551)
+
T Consensus 394 m 394 (532)
T KOG1954|consen 394 M 394 (532)
T ss_pred H
Confidence 5
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=439.30 Aligned_cols=330 Identities=22% Similarity=0.308 Sum_probs=277.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|.|+|||+||||||||+|+|+|++.+++++.|+.|||+. |+...|.+
T Consensus 3 ~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~----------------------y~~~~~~~---------- 50 (444)
T COG1160 3 TPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI----------------------YGDAEWLG---------- 50 (444)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCc----------------------cceeEEcC----------
Confidence 4899999999999999999999999999999999999997 45555555
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||+|+.....+.+.. .+.+++..++..||++|||+|++. ++++.|..+++.|++.++|+++|+||+|...
T Consensus 51 -~~f~lIDTgGl~~~~~~~l~~--~i~~Qa~~Ai~eADvilfvVD~~~-Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 51 -REFILIDTGGLDDGDEDELQE--LIREQALIAIEEADVILFVVDGRE-GITPADEEIAKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred -ceEEEEECCCCCcCCchHHHH--HHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEEEcccCch
Confidence 679999999999755444443 378889999999999999999996 9999999999999988899999999999985
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhc
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAK 295 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~ 295 (551)
.++ ...++|++|+ +.+ +.+||.+|.|+ .+|++.+... ..
T Consensus 127 ~e~----~~~efyslG~--g~~----~~ISA~Hg~Gi-------------~dLld~v~~~---------------l~--- 165 (444)
T COG1160 127 AEE----LAYEFYSLGF--GEP----VPISAEHGRGI-------------GDLLDAVLEL---------------LP--- 165 (444)
T ss_pred hhh----hHHHHHhcCC--CCc----eEeehhhccCH-------------HHHHHHHHhh---------------cC---
Confidence 433 4567899998 544 56999988887 6676665221 00
Q ss_pred CCCCcc--ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEE--EEecCCCccccCCceeecCCCCC
Q psy11743 296 APYEDA--DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPGNALVVDPKKQF 370 (551)
Q Consensus 296 ~~~~~~--~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~--~~~~~~~~~l~dt~gi~~~~~~~ 370 (551)
++.... ....+++|+++|+|||||||++|+|+|++ ++.+++.||||| .++ +.+++..+.++||+|++.+++..
T Consensus 166 ~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 166 PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred CcccccccccCCceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc
Confidence 111111 11368999999999999999999999999 799999999998 655 55679999999999999999999
Q ss_pred chhhhhhhHHHhhhhhhccccCc-------cccccccccccee---------EEEecccCCCCccchhhhhhhhhccChh
Q psy11743 371 RPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQTPEVAR---------VYIGSFWDQPLVHDVNRRLFEDRSSTSN 434 (551)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------v~~~~~wd~~~~~~~~~~l~~~~~~~~~ 434 (551)
+++++|+. .++.++|.++|+ ..|.+.||..++. |+|+||||+ +++++..++
T Consensus 244 e~~E~~Sv---~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl----------~~~~~~~~~ 310 (444)
T COG1160 244 ESVEKYSV---ARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDL----------VEEDEATME 310 (444)
T ss_pred cceEEEee---hhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEcccc----------CCchhhHHH
Confidence 99999999 999999999964 5799999987654 899999998 444556677
Q ss_pred hHHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhhc
Q psy11743 435 SVQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREYQ 477 (551)
Q Consensus 435 ~~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~ 477 (551)
.+.+++..+|+ .|+|++++ ++|++ .++++.+.++|+++.++++
T Consensus 311 ~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~ 358 (444)
T COG1160 311 EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRIS 358 (444)
T ss_pred HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccC
Confidence 78888888887 89999999 89999 9999999999999988654
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=311.19 Aligned_cols=328 Identities=19% Similarity=0.181 Sum_probs=225.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..|+|+|+|++|||||||+|+|++...+.+...|+.|+++...... +.+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~----------------------~~~--------- 85 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAE----------------------WNG--------- 85 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEE----------------------ECC---------
Confidence 4489999999999999999999998876677778777776543211 111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+..... .+ ...+..++..++..||++|+|+|+++ +.+..+..+...++..++|+++|+||+|+.
T Consensus 86 --~~~~l~DT~G~~~~~~-~~--~~~~~~~~~~~~~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 86 --RRFTVVDTGGWEPDAK-GL--QASVAEQAEVAMRTADAVLFVVDATV-GATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred --cEEEEEeCCCcCCcch-hH--HHHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 4588999999874211 11 11255667778899999999999996 677777888888888899999999999986
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhh
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLA 294 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~ 294 (551)
.... ....+|.++. +. .+++||++|.|+ ++|++.+......
T Consensus 160 ~~~~----~~~~~~~~g~--~~----~~~iSA~~g~gi-------------~eL~~~i~~~l~~---------------- 200 (472)
T PRK03003 160 RGEA----DAAALWSLGL--GE----PHPVSALHGRGV-------------GDLLDAVLAALPE---------------- 200 (472)
T ss_pred ccch----hhHHHHhcCC--CC----eEEEEcCCCCCc-------------HHHHHHHHhhccc----------------
Confidence 5321 1234455554 22 257999999998 4555554211000
Q ss_pred cCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-e--EEEEecCCCccccCCceeecCCCCCc
Q psy11743 295 KAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPGNALVVDPKKQFR 371 (551)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~--~~~~~~~~~~~l~dt~gi~~~~~~~~ 371 (551)
..........+++++++|.|||||||++|+|++..+ ..++..++||+ . ..+.+++..+.++||||+........
T Consensus 201 -~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~--~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~ 277 (472)
T PRK03003 201 -VPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEER--SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQAS 277 (472)
T ss_pred -ccccccccccceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccc
Confidence 000000112468999999999999999999999873 57888999997 2 33556788889999999976655444
Q ss_pred hhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhh
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNS 435 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~ 435 (551)
+.+.|+. .++..++..+|+ ..+.+.++ ..++.|+|+||||+.... ....
T Consensus 278 ~~e~~~~---~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~------------~~~~ 342 (472)
T PRK03003 278 GHEYYAS---LRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDED------------RRYY 342 (472)
T ss_pred hHHHHHH---HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChh------------HHHH
Confidence 5566654 334445555553 33444433 456779999999983110 0011
Q ss_pred HHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhh
Q psy11743 436 VQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREY 476 (551)
Q Consensus 436 ~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~ 476 (551)
....+.+.+. .++|++++ ++|.+ ++++..+.+.++++++++
T Consensus 343 ~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i 388 (472)
T PRK03003 343 LEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRI 388 (472)
T ss_pred HHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 2233333333 46787777 89999 999999999998877753
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=311.14 Aligned_cols=326 Identities=21% Similarity=0.253 Sum_probs=232.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|||||||+|+|++...+.+...++.|+++...... +.+ .
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~----------------------~~~-----------~ 47 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAE----------------------WGG-----------R 47 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEE----------------------ECC-----------e
Confidence 4899999999999999999998876677788888877543211 111 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.+.+|||||+.... ..+ ...+..++..++..+|++++|+|++. +.+..+..+.+++++.++|+++|+||+|+...+
T Consensus 48 ~~~liDTpG~~~~~-~~~--~~~~~~~~~~~~~~ad~vl~vvD~~~-~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 48 EFILIDTGGIEEDD-DGL--DKQIREQAEIAIEEADVILFVVDGRE-GLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred EEEEEECCCCCCcc-hhH--HHHHHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 58999999986421 111 12356677788899999999999996 788888889999998899999999999997644
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAP 297 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 297 (551)
.. ...++.++. .+.+++||.+|.|+ +++++.+...... ..
T Consensus 124 ~~----~~~~~~lg~------~~~~~vSa~~g~gv-------------~~ll~~i~~~l~~-----------------~~ 163 (429)
T TIGR03594 124 AV----AAEFYSLGF------GEPIPISAEHGRGI-------------GDLLDAILELLPE-----------------EE 163 (429)
T ss_pred cc----HHHHHhcCC------CCeEEEeCCcCCCh-------------HHHHHHHHHhcCc-----------------cc
Confidence 21 123445543 24678999998887 4455544211000 00
Q ss_pred CCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eE--EEEecCCCccccCCceeecCCCCCchhh
Q psy11743 298 YEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI--AVMYDEREGSVPGNALVVDPKKQFRPLD 374 (551)
Q Consensus 298 ~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~--~~~~~~~~~~l~dt~gi~~~~~~~~~~~ 374 (551)
.........++++++|.+|+||||++|+|++.+ +..++..++||+ .. .+.+++..+.++||||+.+.......++
T Consensus 164 ~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e 241 (429)
T TIGR03594 164 EEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE--RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVE 241 (429)
T ss_pred ccccccCCceEEEEECCCCCCHHHHHHHHHCCC--eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHH
Confidence 001112356799999999999999999999987 477889999996 32 3445777899999999998877767788
Q ss_pred hhhhHHHhhhhhhccccCc-------ccccccccc---------cceeEEEecccCCCCccchhhhhhhhhccChhhHHH
Q psy11743 375 KFGNSFLNRFQCSLVNSPV-------LKGKVLQTP---------EVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQA 438 (551)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~ 438 (551)
+|+. .++..++..+|+ ..|.+.++. .++.|+|+||||+. . +...++.+..
T Consensus 242 ~~~~---~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~-~----------~~~~~~~~~~ 307 (429)
T TIGR03594 242 KYSV---LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV-K----------DEKTREEFKK 307 (429)
T ss_pred HHHH---HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC-C----------CHHHHHHHHH
Confidence 8775 556666666664 345555442 46679999999983 1 1111222444
Q ss_pred HHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhh
Q psy11743 439 YIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREY 476 (551)
Q Consensus 439 ~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~ 476 (551)
.+...+. .++|++++ ++|.+ +++++.+.++|+.+.+++
T Consensus 308 ~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i 350 (429)
T TIGR03594 308 ELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRI 350 (429)
T ss_pred HHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 4444443 46788877 89999 999999999998776653
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=309.37 Aligned_cols=325 Identities=21% Similarity=0.250 Sum_probs=230.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|++|||||||+|+|++...+.+...++.|+++...... +.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~----------------------~~~----------- 48 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAE----------------------WLG----------- 48 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEE----------------------ECC-----------
Confidence 68999999999999999999998876667777777776533211 111
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+..... .+ ...+..++..++..+|++|+|+|+.. +.+..+..+..++++.++|+++|+||+|+...
T Consensus 49 ~~~~liDT~G~~~~~~-~~--~~~~~~~~~~~~~~ad~il~vvd~~~-~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~ 124 (435)
T PRK00093 49 REFILIDTGGIEPDDD-GF--EKQIREQAELAIEEADVILFVVDGRA-GLTPADEEIAKILRKSNKPVILVVNKVDGPDE 124 (435)
T ss_pred cEEEEEECCCCCCcch-hH--HHHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCcEEEEEECccCccc
Confidence 4589999999986221 11 11245556678899999999999986 77888888888888889999999999997653
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKA 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~ 296 (551)
+.. ...++.++. . ..+++||.+|.|+ +++++.+..... .
T Consensus 125 ~~~----~~~~~~lg~--~----~~~~iSa~~g~gv-------------~~l~~~I~~~~~------------------~ 163 (435)
T PRK00093 125 EAD----AYEFYSLGL--G----EPYPISAEHGRGI-------------GDLLDAILEELP------------------E 163 (435)
T ss_pred hhh----HHHHHhcCC--C----CCEEEEeeCCCCH-------------HHHHHHHHhhCC------------------c
Confidence 221 123344443 1 2477999998887 455555522000 0
Q ss_pred CCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EE--EEecCCCccccCCceeecCCCCCchh
Q psy11743 297 PYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IA--VMYDEREGSVPGNALVVDPKKQFRPL 373 (551)
Q Consensus 297 ~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~--~~~~~~~~~l~dt~gi~~~~~~~~~~ 373 (551)
.........+++++++|.||+||||++|+|++.. ++.++..+++|+. .. +.+++..+.++||||+.++......+
T Consensus 164 ~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~ 241 (435)
T PRK00093 164 EEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE--RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGV 241 (435)
T ss_pred cccccccccceEEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHH
Confidence 0000012356899999999999999999999987 5788999999973 32 44678889999999999888777778
Q ss_pred hhhhhHHHhhhhhhccccCc-------ccccccccc---------cceeEEEecccCCCCccchhhhhhhhhccChhhHH
Q psy11743 374 DKFGNSFLNRFQCSLVNSPV-------LKGKVLQTP---------EVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQ 437 (551)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~ 437 (551)
++|+. .++..++..+|+ ..|.+.++. ..+.|+|+||||+.. . ...+.+.
T Consensus 242 e~~~~---~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~----------~--~~~~~~~ 306 (435)
T PRK00093 242 EKYSV---IRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD----------E--KTMEEFK 306 (435)
T ss_pred HHHHH---HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC----------H--HHHHHHH
Confidence 88875 555566666654 345555543 356699999999831 0 1112234
Q ss_pred HHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhh
Q psy11743 438 AYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREY 476 (551)
Q Consensus 438 ~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~ 476 (551)
+++...+. .++|++++ ++|.+ +++++.+.++++.+++++
T Consensus 307 ~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i 350 (435)
T PRK00093 307 KELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRI 350 (435)
T ss_pred HHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcC
Confidence 44444443 46788888 88999 999999999998877653
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=317.31 Aligned_cols=330 Identities=18% Similarity=0.172 Sum_probs=229.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|++|||||||+|+|++.....+...|+.|+++..... .+.+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~----------------------~~~~--------- 322 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDA----------------------EWAG--------- 322 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEE----------------------EECC---------
Confidence 347899999999999999999999887777788888877754321 1111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.... ..+. ..+..++..++..+|++|+|+|++. +++..+..+.+.++..++|+++|+||+|+.
T Consensus 323 --~~~~liDT~G~~~~~-~~~~--~~~~~~~~~~~~~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 323 --TDFKLVDTGGWEADV-EGID--SAIASQAQIAVSLADAVVFVVDGQV-GLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred --EEEEEEeCCCcCCCC-ccHH--HHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 458999999987422 1121 2356677788899999999999986 788888889999998999999999999987
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhh
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLA 294 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~ 294 (551)
.... ....+|.++. + ..+++||++|.|+ .+|++.+...... .
T Consensus 397 ~~~~----~~~~~~~lg~--~----~~~~iSA~~g~GI-------------~eLl~~i~~~l~~-----------~---- 438 (712)
T PRK09518 397 ASEY----DAAEFWKLGL--G----EPYPISAMHGRGV-------------GDLLDEALDSLKV-----------A---- 438 (712)
T ss_pred cchh----hHHHHHHcCC--C----CeEEEECCCCCCc-------------hHHHHHHHHhccc-----------c----
Confidence 5322 1234555654 2 2367999999998 4555554211000 0
Q ss_pred cCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCc
Q psy11743 295 KAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFR 371 (551)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~ 371 (551)
............++++++|.|||||||++|+|++.. ...++..++||+. ..+.+++.++.++||||+........
T Consensus 439 ~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~--~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~ 516 (712)
T PRK09518 439 EKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE--RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT 516 (712)
T ss_pred cccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc--ccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccch
Confidence 000000011245899999999999999999999997 3577889999972 23567888899999999987665555
Q ss_pred hhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhh
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNS 435 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~ 435 (551)
+.+.|+. .++..++..+|+ ..+.+.++ ..++.|+|+||||+.-. + ..+.
T Consensus 517 ~~e~~~~---~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~----------~--~~~~ 581 (712)
T PRK09518 517 GAEYYSS---LRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE----------F--RRQR 581 (712)
T ss_pred hHHHHHH---HHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh----------h--HHHH
Confidence 5566654 445556666654 33444443 34677999999998311 0 0111
Q ss_pred HHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhhh
Q psy11743 436 VQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREY 476 (551)
Q Consensus 436 ~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~ 476 (551)
+...+...+. .++|++++ ++|.+ ++|++.+.+++.++.+++
T Consensus 582 ~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i 627 (712)
T PRK09518 582 LERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRI 627 (712)
T ss_pred HHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 2223333332 56777777 89999 999999999998777643
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=249.99 Aligned_cols=242 Identities=22% Similarity=0.264 Sum_probs=191.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|+||+|||||+|+|+|++..+++..+++|+|.+..-.. +++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e----------------------~~~--------- 225 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE----------------------RDG--------- 225 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE----------------------ECC---------
Confidence 4689999999999999999999999999999999999998754221 111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHH--HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGV--LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~--~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
+.+.+|||+|+... ..+....++.+. +..+++.||++++|+|++. +++.++..++..+.+.++++++|+||||
T Consensus 226 --~~~~liDTAGiRrk--~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~g~~~vIvvNKWD 300 (444)
T COG1160 226 --RKYVLIDTAGIRRK--GKITESVEKYSVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEAGRGIVIVVNKWD 300 (444)
T ss_pred --eEEEEEECCCCCcc--cccccceEEEeehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 67999999999873 334444444443 3467899999999999997 9999999999999999999999999999
Q ss_pred CCCHH-HHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 213 MVDHQ-QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 213 l~~~~-~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
+++.. ..++.+...+.+ .+....++|++++||++|.++ ..++ +.+.+...++.++.+++.+|+++..+
T Consensus 301 l~~~~~~~~~~~k~~i~~--~l~~l~~a~i~~iSA~~~~~i-----~~l~----~~i~~~~~~~~~ri~Ts~LN~~l~~a 369 (444)
T COG1160 301 LVEEDEATMEEFKKKLRR--KLPFLDFAPIVFISALTGQGL-----DKLF----EAIKEIYECATRRISTSLLNRVLEDA 369 (444)
T ss_pred cCCchhhHHHHHHHHHHH--HhccccCCeEEEEEecCCCCh-----HHHH----HHHHHHHHHhccccCHHHHHHHHHHH
Confidence 98752 333334444433 233567889999999999998 4444 33555567788899999999999999
Q ss_pred hhhcCCCCc-----------cccCCCcEEEEEeecC-CChhHHHHHHHhC-----CCCcccccCCCccc
Q psy11743 292 RLAKAPYED-----------ADFDAKPTVMLVGQYS-TGKTTFIRYLLER-----DFPGIHIGPEPTTD 343 (551)
Q Consensus 292 ~~~~~~~~~-----------~~~~~~~~~~~~g~~~-~gKss~~n~l~~~-----~~~~~~v~~~~~~t 343 (551)
...+||+.. |....||+|+++|+.+ .-.-||.+||.++ +|.|+|+...++..
T Consensus 370 ~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~~ 438 (444)
T COG1160 370 VAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKKK 438 (444)
T ss_pred HHhCCCCccCCceEEEEEEecCCCCCCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEecC
Confidence 998876542 7889999999999654 5599999999988 67788887776554
|
|
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=216.23 Aligned_cols=227 Identities=50% Similarity=0.829 Sum_probs=176.6
Q ss_pred hhcCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCch
Q psy11743 293 LAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRP 372 (551)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~ 372 (551)
...+...+.+...+|.|.++|+.++||||+||||+.++++|..++++|.|.+++.+++|+...++++++.+.+++++|++
T Consensus 45 f~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~g 124 (532)
T KOG1954|consen 45 FHSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRG 124 (532)
T ss_pred cccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhh
Confidence 33344456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHhhhhhhccccCcc----------------------------------------------------------
Q psy11743 373 LDKFGNSFLNRFQCSLVNSPVL---------------------------------------------------------- 394 (551)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 394 (551)
|.+||+.|++|+.|+..++.++
T Consensus 125 L~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi 204 (532)
T KOG1954|consen 125 LNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVI 204 (532)
T ss_pred hhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHH
Confidence 9999999999999988776431
Q ss_pred -----------------------------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHH
Q psy11743 395 -----------------------------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAY 439 (551)
Q Consensus 395 -----------------------------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~ 439 (551)
+|+.+.++++++||++|+||.|++..++++||++++++ +..+
T Consensus 205 ~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvYigSfw~hPl~~~a~rrLfeaee~d---l~rD 281 (532)
T KOG1954|consen 205 DALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVYIGSFWDHPLQDPANRRLFEAEEQD---LFRD 281 (532)
T ss_pred HHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEEeeccccCcccCccHHHHHHHHHHH---HHHH
Confidence 28999999999999999999999999999999997654 3333
Q ss_pred HHHHHHhccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHH
Q psy11743 440 IISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQEL 519 (551)
Q Consensus 440 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (551)
+....++.+-+....-.+++++.+..+.+..++.+ .||.+||+.+.+.+.+.++. ..|. ..+.. .+
T Consensus 282 lq~lp~ka~~rKind~ikrAr~akvHAyiis~lkk--emp~~~gk~~~kk~lidnl~----~iy~-------~l~re-~~ 347 (532)
T KOG1954|consen 282 LQTLPRKAALRKLNDLIKRARLAKVHAYIISCLKK--EMPSVFGKEKKKKRLIDNLI----DIYE-------KLQRE-HN 347 (532)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhcchhhHHHHHHhHH----HHHH-------HHhHh-hc
Confidence 33322222221111112223333333445555655 78999999988888655554 4444 33334 68
Q ss_pred hccCCCCCCCccchHHH
Q psy11743 520 LQHHDFTKFQTLRPRLI 536 (551)
Q Consensus 520 ~~~~d~~~~~~~~~~~~ 536 (551)
+.++|||+...+++.++
T Consensus 348 Is~gDfPd~~~mre~l~ 364 (532)
T KOG1954|consen 348 ISPGDFPDVEKMREFLQ 364 (532)
T ss_pred CCCcCCCCHHHHHHHHh
Confidence 89999999988887654
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-25 Score=212.53 Aligned_cols=155 Identities=23% Similarity=0.319 Sum_probs=122.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|+||||||||+|+|+|.+.++++..|++|+.++..+...++
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~------------------------------- 53 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN------------------------------- 53 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-------------------------------
Confidence 3467999999999999999999999999999999999999988776542
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
.++.+|||||+..+ +..+.+ -+.+.++..+..+|+++||+|+.. +....+..+++.++..+.|+++++||+|..
T Consensus 54 --~QiIfvDTPGih~p-k~~l~~--~m~~~a~~sl~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 54 --AQIIFVDTPGIHKP-KHALGE--LMNKAARSALKDVDLILFVVDADE-GWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred --ceEEEEeCCCCCCc-chHHHH--HHHHHHHHHhccCcEEEEEEeccc-cCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 46999999999986 333332 367788889999999999999996 788888889999988778999999999999
Q ss_pred CHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+++. +.... +.. .. ..++..++++||++|.++
T Consensus 128 ~~~~~l~~~~-~~~---~~--~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 128 KPKTVLLKLI-AFL---KK--LLPFKEIVPISALKGDNV 160 (298)
T ss_pred CcHHHHHHHH-HHH---Hh--hCCcceEEEeeccccCCH
Confidence 8776 33222 221 11 223446777888666654
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=223.85 Aligned_cols=237 Identities=22% Similarity=0.257 Sum_probs=170.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEE-eCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVM-YDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~-~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|++|||||||+|+|++.+...+...+++|++...... ++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~------------------------------- 258 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG------------------------------- 258 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-------------------------------
Confidence 358999999999999999999999986555666666666543211 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHH--HHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVL--EWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~--~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+..... ...+.++...+ ..++.++|++++|+|++. +.+.++..++..+...++|+++|+||+
T Consensus 259 ---~~~~l~DTaG~~~~~~--~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~~~piIiV~NK~ 332 (472)
T PRK03003 259 ---KTWRFVDTAGLRRRVK--QASGHEYYASLRTHAAIEAAEVAVVLIDASE-PISEQDQRVLSMVIEAGRALVLAFNKW 332 (472)
T ss_pred ---EEEEEEECCCcccccc--ccchHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 3478999999864221 11112233333 346789999999999996 788888888888887899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
|+................+. ...+.+++++||++|.|+ ..++. .+.+.+..+..+++++.+|+++..+
T Consensus 333 Dl~~~~~~~~~~~~i~~~l~---~~~~~~~~~~SAk~g~gv-----~~lf~----~i~~~~~~~~~~i~t~~ln~~~~~~ 400 (472)
T PRK03003 333 DLVDEDRRYYLEREIDRELA---QVPWAPRVNISAKTGRAV-----DKLVP----ALETALESWDTRIPTGRLNAWLGEL 400 (472)
T ss_pred ccCChhHHHHHHHHHHHhcc---cCCCCCEEEEECCCCCCH-----HHHHH----HHHHHHHHhcccCCHHHHHHHHHHH
Confidence 99864322111111111122 234568899999999998 44442 2445555666788999999999999
Q ss_pred hhhcCCCC-----------ccccCCCcEEEEEeecCCChhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 292 RLAKAPYE-----------DADFDAKPTVMLVGQYSTGKTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 292 ~~~~~~~~-----------~~~~~~~~~~~~~g~~~~gKss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
...++||. .|+..+||+|++++ ++--+.+|.+||.++ ++.|+|+...++
T Consensus 401 ~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~-~~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~ 465 (472)
T PRK03003 401 VAATPPPVRGGKQPRILFATQASTRPPTFVLFT-TGFLEAGYRRFLERRLRETFGFEGSPIRISVR 465 (472)
T ss_pred HHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEe-CCCCChHHHHHHHHHHHHHcCCCcceEEEEEE
Confidence 88888874 38899999999994 444589999999887 667788877664
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-23 Score=218.71 Aligned_cols=239 Identities=22% Similarity=0.230 Sum_probs=170.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|++|+|||||+|+|++.+...+...+++|++........ .+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~----------------------~~--------- 220 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER----------------------DG--------- 220 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE----------------------CC---------
Confidence 45899999999999999999999988655556666665554221110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchH--HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFT--GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~--~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.+|||||+..... +....+.. .....++..+|++|+|+|+.. +.+.++..++..+.+.++|+++|+||+|
T Consensus 221 --~~~~lvDT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~~~~~ivv~NK~D 295 (435)
T PRK00093 221 --QKYTLIDTAGIRRKGK--VTEGVEKYSVIRTLKAIERADVVLLVIDATE-GITEQDLRIAGLALEAGRALVIVVNKWD 295 (435)
T ss_pred --eeEEEEECCCCCCCcc--hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 4589999999976322 22122222 223457899999999999996 8889998888888888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHh
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRAR 292 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~ 292 (551)
+.+.+...+........+. ..+..|++++||++|.|+ ..++ +.+.+....+..++++..+|+++..+.
T Consensus 296 l~~~~~~~~~~~~~~~~l~---~~~~~~i~~~SA~~~~gv-----~~l~----~~i~~~~~~~~~~i~t~~ln~~l~~~~ 363 (435)
T PRK00093 296 LVDEKTMEEFKKELRRRLP---FLDYAPIVFISALTGQGV-----DKLL----EAIDEAYENANRRISTSVLNRVLEEAV 363 (435)
T ss_pred CCCHHHHHHHHHHHHHhcc---cccCCCEEEEeCCCCCCH-----HHHH----HHHHHHHHHHcCcCChHHHHHHHHHHH
Confidence 9865433222222211222 345678999999999988 3332 223333445566778889999999887
Q ss_pred hhcCCCC-----------ccccCCCcEEEEEeecCCC-hhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 293 LAKAPYE-----------DADFDAKPTVMLVGQYSTG-KTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 293 ~~~~~~~-----------~~~~~~~~~~~~~g~~~~g-Kss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
..++|+. .|....||+|+++++.... +.+|.+||.++ ++.|+|+....+
T Consensus 364 ~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~ 429 (435)
T PRK00093 364 ERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEFR 429 (435)
T ss_pred HcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCcccEEEEEe
Confidence 7777764 2778899999999975544 99999999887 667788777664
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-23 Score=218.09 Aligned_cols=236 Identities=22% Similarity=0.250 Sum_probs=166.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++.+...+...+++|++........ + +
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-----------------~-----~--------- 219 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-----------------N-----G--------- 219 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-----------------C-----C---------
Confidence 44789999999999999999999988655566666665554321110 0 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchH--HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFT--GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~--~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.+|||||+..... +....+.. .....++..+|++++|+|+.. +.+.++..++..+.+.++|+++|+||+|
T Consensus 220 --~~~~liDT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~~~~iiiv~NK~D 294 (429)
T TIGR03594 220 --KKYLLIDTAGIRRKGK--VTEGVEKYSVLRTLKAIERADVVLLVLDATE-GITEQDLRIAGLILEAGKALVIVVNKWD 294 (429)
T ss_pred --cEEEEEECCCcccccc--chhhHHHHHHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 3589999999976322 21112222 223457899999999999996 8888888888888888999999999999
Q ss_pred CC-CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 213 MV-DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 213 l~-~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
+. +.+...+ +...+.. .+......+++++||++|.|+ ..++ +.+.+.+..+..++++..+|+++..+
T Consensus 295 l~~~~~~~~~-~~~~~~~--~~~~~~~~~vi~~SA~~g~~v-----~~l~----~~i~~~~~~~~~~i~t~~ln~~l~~~ 362 (429)
T TIGR03594 295 LVKDEKTREE-FKKELRR--KLPFLDFAPIVFISALTGQGV-----DKLL----DAIDEVYENANRRISTSKLNRVLEEA 362 (429)
T ss_pred cCCCHHHHHH-HHHHHHH--hcccCCCCceEEEeCCCCCCH-----HHHH----HHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 98 4333322 2222211 112335578999999999998 3333 22334445566677888999999988
Q ss_pred hhhcCCCC-----------ccccCCCcEEEEEeecCCC-hhHHHHHHHhC-----CCCcccccC
Q psy11743 292 RLAKAPYE-----------DADFDAKPTVMLVGQYSTG-KTTFIRYLLER-----DFPGIHIGP 338 (551)
Q Consensus 292 ~~~~~~~~-----------~~~~~~~~~~~~~g~~~~g-Kss~~n~l~~~-----~~~~~~v~~ 338 (551)
...++|+. .|....||+|+++++.... +.+|.+||.++ ++.|+|+..
T Consensus 363 ~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~ 426 (429)
T TIGR03594 363 VAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGNRPELLPFSYKRYLENQFREAFGFEGTPIRL 426 (429)
T ss_pred HHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhcCCCcceEEE
Confidence 77777763 2778999999999975544 99999999887 556676654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=221.06 Aligned_cols=237 Identities=19% Similarity=0.205 Sum_probs=168.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEE-eCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVM-YDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~-~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|++|||||||+|+|++.+...+...+++|++...... ++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~------------------------------- 497 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG------------------------------- 497 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-------------------------------
Confidence 358999999999999999999999986556666766766543211 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHH--HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGV--LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~--~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+...... ..+.++... ...++..+|++++|+|+.. +.+.++..++..+.+.++|+++|+||+
T Consensus 498 ---~~~~liDTaG~~~~~~~--~~~~e~~~~~r~~~~i~~advvilViDat~-~~s~~~~~i~~~~~~~~~piIiV~NK~ 571 (712)
T PRK09518 498 ---EDWLFIDTAGIKRRQHK--LTGAEYYSSLRTQAAIERSELALFLFDASQ-PISEQDLKVMSMAVDAGRALVLVFNKW 571 (712)
T ss_pred ---CEEEEEECCCcccCccc--chhHHHHHHHHHHHHhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEEch
Confidence 34789999998753221 111223332 2355789999999999996 788888888888877889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
|+.+..... .+...+... +...++.+++++||++|.|+ ..+++ .+.+.+..+.+++++..+|+++..+
T Consensus 572 DL~~~~~~~-~~~~~~~~~--l~~~~~~~ii~iSAktg~gv-----~~L~~----~i~~~~~~~~~~i~T~~Ln~~l~~~ 639 (712)
T PRK09518 572 DLMDEFRRQ-RLERLWKTE--FDRVTWARRVNLSAKTGWHT-----NRLAP----AMQEALESWDQRIPTGKLNAFLGKI 639 (712)
T ss_pred hcCChhHHH-HHHHHHHHh--ccCCCCCCEEEEECCCCCCH-----HHHHH----HHHHHHHHhcccCChHHHHHHHHHH
Confidence 998754322 222222111 11345678899999999998 33332 2333444556678899999999988
Q ss_pred hhhcCCCC-----------ccccCCCcEEEEEeecCCChhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 292 RLAKAPYE-----------DADFDAKPTVMLVGQYSTGKTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 292 ~~~~~~~~-----------~~~~~~~~~~~~~g~~~~gKss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
...++|+. .|...+||+|+++++ .--+.+|.+||.++ ++.|+|+....+
T Consensus 640 ~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~-~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~ 704 (712)
T PRK09518 640 QAEHPHPLRGGKQPRILFATQASTRPPRFVIFTT-GFLEHGYRRFLERSLREEFGFEGSPIQISVN 704 (712)
T ss_pred HhhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC-CCCChHHHHHHHHHHHHHcCCccceEEEEEE
Confidence 88777764 388899999999954 44488999999887 667788877654
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-20 Score=168.12 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=108.3
Q ss_pred HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEE
Q psy11743 165 LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARV 242 (551)
Q Consensus 165 ~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v 242 (551)
++..++.+|++++|+|++. +....+..+.+.+.. .++|+++|+||+|+.++++... +...+ .. ..+. .++
T Consensus 2 ~~~~l~~aD~il~VvD~~~-p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~-~~~~~---~~--~~~~-~~~ 73 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARD-PMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTAR-WVKIL---SK--EYPT-IAF 73 (157)
T ss_pred hhHhhhhCCEEEEEEECCC-CccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHH-HHHHH---hc--CCcE-EEE
Confidence 4667899999999999996 455555566666654 3489999999999987654322 22222 11 1121 257
Q ss_pred EecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHH
Q psy11743 243 YIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTF 322 (551)
Q Consensus 243 ~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~ 322 (551)
.+||+.+.+. ++|++.+..+.. ... ...+.+++++|.|||||||+
T Consensus 74 ~iSa~~~~~~-------------~~L~~~l~~~~~---------------~~~-------~~~~~~v~~~G~~nvGKStl 118 (157)
T cd01858 74 HASINNPFGK-------------GSLIQLLRQFSK---------------LHS-------DKKQISVGFIGYPNVGKSSI 118 (157)
T ss_pred EeeccccccH-------------HHHHHHHHHHHh---------------hhc-------cccceEEEEEeCCCCChHHH
Confidence 7899888776 445555532211 000 01356899999999999999
Q ss_pred HHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 323 IRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 323 ~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
+|+|.+.. .+.+++.||+|+......-+..+.++||||+
T Consensus 119 iN~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 119 INTLRSKK--VCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred HHHHhcCC--ceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 99999987 5899999999987665544567899999996
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=170.36 Aligned_cols=146 Identities=23% Similarity=0.245 Sum_probs=100.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|+||||||||+|+|+|.+. .+..-|+.|.++....+.- +. .
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~-----------------~~----------------~ 47 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKL-----------------GD----------------Q 47 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEE-----------------TT----------------E
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEe-----------------cC----------------c
Confidence 699999999999999999999984 4677788888876554331 11 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
.+.+|||||+.+..... .-.+....++ ...|++++|+|+++ .+....+..++.+.++|+++|+||+|...
T Consensus 48 ~~~lvDlPG~ysl~~~s-----~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 48 QVELVDLPGIYSLSSKS-----EEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp EEEEEE----SSSSSSS-----HHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred eEEEEECCCcccCCCCC-----cHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 59999999987743221 1234445554 69999999999985 35556777888889999999999999875
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.....-....+...++ .|++++||.++.|+
T Consensus 120 ~~g~~id~~~Ls~~Lg-------~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 120 RKGIEIDAEKLSERLG-------VPVIPVSARTGEGI 149 (156)
T ss_dssp HTTEEE-HHHHHHHHT-------S-EEEEBTTTTBTH
T ss_pred HcCCEECHHHHHHHhC-------CCEEEEEeCCCcCH
Confidence 4321101112222232 47999999999887
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=185.62 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=133.8
Q ss_pred cccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCCCCHHHHHHHHHHHHHHccc
Q psy11743 155 VDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADMVDHQQLMRVYGALMWSLGK 232 (551)
Q Consensus 155 ~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~ 232 (551)
++++.+++++++..++++|+||.++||++ ++......+.+++.+. .+..++++||+||+++++.. .|..+|.
T Consensus 158 FErNLE~WRQLWRVlErSDivvqIVDARn-Pllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~-aWa~YF~---- 231 (562)
T KOG1424|consen 158 FERNLEIWRQLWRVLERSDIVVQIVDARN-PLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRV-AWAEYFR---- 231 (562)
T ss_pred hhhCHHHHHHHHHHHhhcceEEEEeecCC-ccccCChhHHHHHhccccccceEEEEehhhcCCHHHHH-HHHHHHH----
Confidence 56778899999999999999999999997 5444444555666543 46789999999999987643 3555553
Q ss_pred ccCCCCceEEEecccCCCCCccc-----ccc----------cccchhhhhhhhhhhcchhhhhhhhhHHH-HHHHhhhcC
Q psy11743 233 VLQTPEVARVYIGSFWDQPLVHD-----VNR----------RLFEDEEQDLFKDLQSLPRNAALRKLNDL-IKRARLAKA 296 (551)
Q Consensus 233 l~~~~~~~~v~iSa~~g~~~~~~-----~~~----------~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~-~~~~~~~~~ 296 (551)
....+++|.||+-....... +.+ ..+..+.++++.....-...+ ..+... +-.+ ..+
T Consensus 232 ---~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~--~~v~~~~~~s~--~~~ 304 (562)
T KOG1424|consen 232 ---QNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEI--EDVEQLRLISA--MEP 304 (562)
T ss_pred ---hcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccch--hhHHhhhhhhc--ccc
Confidence 23368899999762111000 000 011111111111111000000 001111 0000 001
Q ss_pred CCCccccCC-CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhh
Q psy11743 297 PYEDADFDA-KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDK 375 (551)
Q Consensus 297 ~~~~~~~~~-~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~ 375 (551)
. ......+ ..+|++||.|||||||+||+|.|++ .+.|+..||.||+.++.+-...+.|+|+||++.|+...+..+.
T Consensus 305 ~-~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~K--kVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~em 381 (562)
T KOG1424|consen 305 T-PTGERYKDVVTVGFVGYPNVGKSSTINALVGRK--KVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEM 381 (562)
T ss_pred C-CCCcCCCceeEEEeecCCCCchhHHHHHHhcCc--eeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHHH
Confidence 1 1112222 4799999999999999999999999 6999999999999999999999999999999999976655444
Q ss_pred hh
Q psy11743 376 FG 377 (551)
Q Consensus 376 ~~ 377 (551)
+.
T Consensus 382 vl 383 (562)
T KOG1424|consen 382 VL 383 (562)
T ss_pred HH
Confidence 43
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-19 Score=176.98 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=108.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|++|||||||+|+|+|.+...++..|++|++....+..... .
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~---------------------------------~ 48 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA---------------------------------S 48 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC---------------------------------c
Confidence 6899999999999999999999987777777777776554433210 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
++.++||||+..... .+. ..+.+.+..++..+|++++|+|++. ..+.. ..++..+...+.|+++|+||+|+....
T Consensus 49 qii~vDTPG~~~~~~-~l~--~~~~~~~~~~l~~aDvvl~VvD~~~-~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~ 123 (270)
T TIGR00436 49 QIIFIDTPGFHEKKH-SLN--RLMMKEARSAIGGVDLILFVVDSDQ-WNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKD 123 (270)
T ss_pred EEEEEECcCCCCCcc-hHH--HHHHHHHHHHHhhCCEEEEEEECCC-CCchH-HHHHHHHHhcCCCEEEEEECeeCCCHH
Confidence 489999999976421 111 1134456678899999999999986 33333 566777777889999999999998665
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
........... . .+..+++++||++|.|+
T Consensus 124 ~~~~~~~~~~~-~-----~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 124 KLLPLIDKYAI-L-----EDFKDIVPISALTGDNT 152 (270)
T ss_pred HHHHHHHHHHh-h-----cCCCceEEEecCCCCCH
Confidence 54333222211 1 12236889999999988
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=178.39 Aligned_cols=150 Identities=25% Similarity=0.251 Sum_probs=114.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|+||||||||+|+|++++.++|.+-||+|+|....... +.|
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~------i~G------------------------ 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN------LNG------------------------ 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE------ECC------------------------
Confidence 35689999999999999999999999999999999999999765322 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.++||+|+.+..+ .+++ .. .+..+..+++||+||+|+|++. +.+..+..++. +...++|+++|+||+|+
T Consensus 265 ---~pv~l~DTAGiRet~d-~VE~-iG-IeRs~~~i~~ADlvL~v~D~~~-~~~~~d~~~~~-~~~~~~~~i~v~NK~DL 336 (454)
T COG0486 265 ---IPVRLVDTAGIRETDD-VVER-IG-IERAKKAIEEADLVLFVLDASQ-PLDKEDLALIE-LLPKKKPIIVVLNKADL 336 (454)
T ss_pred ---EEEEEEecCCcccCcc-HHHH-HH-HHHHHHHHHhCCEEEEEEeCCC-CCchhhHHHHH-hcccCCCEEEEEechhc
Confidence 4589999999997433 2221 11 2345677899999999999996 57777777777 55668999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..+...... + .....+.+.+|+++|.|+
T Consensus 337 ~~~~~~~~~-----~------~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 337 VSKIELESE-----K------LANGDAIISISAKTGEGL 364 (454)
T ss_pred ccccccchh-----h------ccCCCceEEEEecCccCH
Confidence 976542111 1 112236789999999987
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-18 Score=171.49 Aligned_cols=154 Identities=23% Similarity=0.312 Sum_probs=113.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+|+|++|||||||+|+|+|.+++.+...+++|++....+...+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-------------------------------- 52 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-------------------------------- 52 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--------------------------------
Confidence 457999999999999999999999987777777777777655443210
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC-
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV- 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~- 214 (551)
.++.++||||+.+... .+. ..+...+...+..+|++++|+|+.+ .++..+..+++.+...+.|+++|+||+|+.
T Consensus 53 -~qi~~iDTPG~~~~~~-~l~--~~~~~~~~~~~~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 53 -AQIIFVDTPGIHKPKR-ALN--RAMNKAAWSSLKDVDLVLFVVDADE-KIGPGDEFILEKLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred -ceEEEEECCCCCCchh-HHH--HHHHHHHHHHHhcCCEEEEEEeCCC-CCChhHHHHHHHHhhcCCCEEEEEECCcCCC
Confidence 3589999999976431 111 1244566677899999999999996 677777788888877789999999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.++.......... ..+..+++.+||+++.|+
T Consensus 128 ~~~~l~~~~~~l~~------~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 128 DKEELLPLLEELSE------LMDFAEIVPISALKGDNV 159 (292)
T ss_pred CHHHHHHHHHHHHh------hCCCCeEEEecCCCCCCH
Confidence 44444333322221 123457889999998887
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=154.90 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=113.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC-CCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~-~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..|-|+++|++|||||||||+|+|+. .+.++-.||-|+.-..... +
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~-------------------~------------- 69 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV-------------------D------------- 69 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe-------------------c-------------
Confidence 367899999999999999999999965 5556677777754432211 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH---hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA---ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.+||.||+.-..-.. +....+...+..++ .+..++++++|++. ++...|.++++++...+.|+++|+|
T Consensus 70 ----~~~~lVDlPGYGyAkv~k-~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~-~~~~~D~em~~~l~~~~i~~~vv~t 143 (200)
T COG0218 70 ----DELRLVDLPGYGYAKVPK-EVKEKWKKLIEEYLEKRANLKGVVLLIDARH-PPKDLDREMIEFLLELGIPVIVVLT 143 (200)
T ss_pred ----CcEEEEeCCCcccccCCH-HHHHHHHHHHHHHHhhchhheEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 238899999998633211 22334566666666 34678899999997 8889899999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCce-EEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVA-RVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~-~v~iSa~~g~~~ 252 (551)
|+|.++..+..+........+.. ..++.+ ++++|+..+.|+
T Consensus 144 K~DKi~~~~~~k~l~~v~~~l~~--~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 144 KADKLKKSERNKQLNKVAEELKK--PPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred ccccCChhHHHHHHHHHHHHhcC--CCCccceEEEEecccccCH
Confidence 99999876554433333323333 222222 788899888876
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-18 Score=170.42 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=116.5
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
..++++..++.+|+||+|+|++. +.+.....+.+.+. ++|+++|+||+|+.+..... .+...+... ..+
T Consensus 14 ~~~~l~~~l~~aDvIL~VvDar~-p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~-~~~~~~~~~-------~~~ 82 (287)
T PRK09563 14 ARREIKENLKLVDVVIEVLDARI-PLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTK-KWIEYFEEQ-------GIK 82 (287)
T ss_pred HHHHHHHHhhhCCEEEEEEECCC-CCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHH-HHHHHHHHc-------CCe
Confidence 36678888999999999999986 56655555555554 68999999999998654332 222222111 236
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||.++.++ +.|++.+..+... ...+.. . ......+.+++++|.||||||
T Consensus 83 vi~vSa~~~~gi-------------~~L~~~l~~~l~~--------~~~~~~-~-----~~~~~~~~~~~~~G~pnvGKS 135 (287)
T PRK09563 83 ALAINAKKGQGV-------------KKILKAAKKLLKE--------KNERRK-A-----KGMRPRAIRAMIIGIPNVGKS 135 (287)
T ss_pred EEEEECCCcccH-------------HHHHHHHHHHHHH--------HHhhhh-h-----cccCcCceEEEEECCCCCCHH
Confidence 788999888776 3454444322111 000000 0 001134679999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|++|+|.+.. .+.++..||+|+..+...-+.++.++||||+..|.
T Consensus 136 sliN~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 136 TLINRLAGKK--IAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred HHHHHHhcCC--ccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 9999999987 47889999999977766656789999999999876
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-18 Score=170.05 Aligned_cols=167 Identities=19% Similarity=0.142 Sum_probs=115.6
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
..+++...++.+|+||+|+|++. +.+..+..+.+.+. ++|+++|+||+|+.+...... +...+... ..+
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~-p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~-~~~~~~~~-------~~~ 79 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARI-PLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQ-WLKYFEEK-------GIK 79 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCC-CCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHH-HHHHHHHc-------CCe
Confidence 46678889999999999999985 56665556666553 689999999999986543322 22222111 236
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||..+.++ .+|.+.+..+.... .+.... ......+.+++++|.||||||
T Consensus 80 vi~iSa~~~~gi-------------~~L~~~i~~~~~~~----~~~~~~----------~~~~~~~~~~~~vG~~nvGKS 132 (276)
T TIGR03596 80 ALAINAKKGKGV-------------KKIIKAAKKLLKEK----NEKLKA----------KGLKNRPIRAMIVGIPNVGKS 132 (276)
T ss_pred EEEEECCCcccH-------------HHHHHHHHHHHHHh----hhhhhh----------ccCCCCCeEEEEECCCCCCHH
Confidence 789999888776 44544443221100 000000 001124678999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|++|+|.+.. .+.++..||+|+..+...-+..+.++||||+..|.
T Consensus 133 slin~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 133 TLINRLAGKK--VAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPK 177 (276)
T ss_pred HHHHHHhCCC--ccccCCCCCeecceEEEEeCCCEEEEECCCcccCC
Confidence 9999999987 47889999999866654445678999999998876
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=150.65 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=103.2
Q ss_pred HHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCc
Q psy11743 162 TGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEV 239 (551)
Q Consensus 162 ~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~ 239 (551)
++.++..++++|++++|+|++. +.+..+..+.+++... ++|+++|+||+|+.+++.... +...+...+ .
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~-~~~~~~~~~-------~ 72 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARN-PLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKA-WAEYFKKEG-------I 72 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccC-CcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHH-HHHHHHhcC-------C
Confidence 4567788999999999999986 5566666777777655 899999999999987654332 222222221 3
Q ss_pred eEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCCh
Q psy11743 240 ARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGK 319 (551)
Q Consensus 240 ~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gK 319 (551)
.++++||.++.+ +++++|.+||||
T Consensus 73 ~ii~iSa~~~~~--------------------------------------------------------~~~~~G~~~vGK 96 (141)
T cd01857 73 VVVFFSALKENA--------------------------------------------------------TIGLVGYPNVGK 96 (141)
T ss_pred eEEEEEecCCCc--------------------------------------------------------EEEEECCCCCCH
Confidence 577888853221 588999999999
Q ss_pred hHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecC
Q psy11743 320 TTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 320 ss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
||++|+|++... ..++..+++|++.....-+..+.++||||+..|
T Consensus 97 stlin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 97 SSLINALVGKKK--VSVSATPGKTKHFQTIFLTPTITLCDCPGLVFP 141 (141)
T ss_pred HHHHHHHhCCCc--eeeCCCCCcccceEEEEeCCCEEEEECCCcCCC
Confidence 999999999874 578889999986554333447899999999764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=153.29 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=103.0
Q ss_pred CEEEEEEeCCCCCCChHHHHHH-HHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 173 DRIILLFDAHKLDISDEFRRSI-EALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 173 D~il~VvDa~~~~~~~~~~~~l-~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
|++++|+|++. +.+.....+. ..+...++|+++|+||+|+.+.+++.+.. ..+... ....++++||.++.+
T Consensus 1 Dvvl~VvD~~~-p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~-~~~~~~------~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARD-PLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWL-AYLRHS------YPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccC-CccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHH-HHHHhh------CCceEEEEeccCCcC
Confidence 78999999986 4444444444 46666789999999999998765433221 111111 134678899999888
Q ss_pred CcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 252 LVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 252 ~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
+ ++|.+.+..... ...+..... .......+++++|+|||||||++|+|.+..
T Consensus 73 i-------------~~L~~~i~~~~~----~~~~~~~~~----------~~~~~~~~~~~~G~~~~GKstlin~l~~~~- 124 (155)
T cd01849 73 I-------------EKKESAFTKQTN----SNLKSYAKD----------GKLKKSITVGVIGYPNVGKSSVINALLNKL- 124 (155)
T ss_pred h-------------hhHHHHHHHHhH----HHHHHHHhc----------cccccCcEEEEEccCCCCHHHHHHHHHccc-
Confidence 7 344444421100 000110000 011256899999999999999999999987
Q ss_pred CcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 332 PGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 332 ~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
...++..++||+......-+..+.++||||+
T Consensus 125 -~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 125 -KLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred -cccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 4679999999986554444577899999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=169.05 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=108.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|+|..+..+...+++|++....+...+ +
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~----------------------~----------- 99 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK----------------------D----------- 99 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC----------------------C-----------
Confidence 4899999999999999999999998766667777766654332211 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
.++.+|||||+..... .+ ...+.+....++..+|++++|+|+.. ++...+..++..++..+.|+++|+||+|+...
T Consensus 100 ~qi~~~DTpG~~~~~~-~l--~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 100 TQVILYDTPGIFEPKG-SL--EKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPIFLLNKIDIESK 175 (339)
T ss_pred eEEEEEECCCcCCCcc-cH--HHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc
Confidence 3589999999965321 11 11245555667899999999999986 66776667788887778899999999998753
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...+ ....+.. ..+..+++++||++|.|+
T Consensus 176 -~~~~-~~~~l~~-----~~~~~~i~~iSAktg~gv 204 (339)
T PRK15494 176 -YLND-IKAFLTE-----NHPDSLLFPISALSGKNI 204 (339)
T ss_pred -cHHH-HHHHHHh-----cCCCcEEEEEeccCccCH
Confidence 2222 1222211 123356889999999987
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-17 Score=151.72 Aligned_cols=159 Identities=21% Similarity=0.289 Sum_probs=103.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC-CCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~-~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|+|||||+|+|++.. ...+...++.|.+..... . +
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~-------------------------------~ 63 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE-V-------------------------------N 63 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE-e-------------------------------C
Confidence 467899999999999999999999986 332333333333322110 0 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh---ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE---RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~---~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.+|||||+...... .....++...+..++. .+|++++|+|++. +++..+..++..+...++|+++|+|
T Consensus 64 ----~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~~~pviiv~n 137 (179)
T TIGR03598 64 ----DGFRLVDLPGYGYAKVS-KEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRERGIPVLIVLT 137 (179)
T ss_pred ----CcEEEEeCCCCccccCC-hhHHHHHHHHHHHHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 24899999998653211 1111223444444443 4689999999986 7888887778888878899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+...........++.. ....+++++||++|.|+
T Consensus 138 K~D~~~~~~~~~~~~~i~~~l~~~--~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 138 KADKLKKSELNKQLKKIKKALKKD--ADDPSVQLFSSLKKTGI 178 (179)
T ss_pred CcccCCHHHHHHHHHHHHHHHhhc--cCCCceEEEECCCCCCC
Confidence 999987554332222222122221 12237899999999986
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=169.02 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=107.8
Q ss_pred HHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEE
Q psy11743 165 LEWFAERVDRIILLFDAHKLDISDE-FRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVY 243 (551)
Q Consensus 165 ~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~ 243 (551)
.+..+.++|.+++|+|+.++.+... ...++..+...++|+++|+||+|+++..+.. .+...+...+ .++++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~-~~~~~~~~~g-------~~v~~ 154 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQ-QWQDRLQQWG-------YQPLF 154 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHH-HHHHHHHhcC-------CeEEE
Confidence 3456899999999999986455553 2455555566789999999999998765432 2333332222 25788
Q ss_pred ecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHH
Q psy11743 244 IGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFI 323 (551)
Q Consensus 244 iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~ 323 (551)
+||.++.|+ ++|++.+. ..+++|+|.||||||||+
T Consensus 155 iSA~tg~GI-------------~eL~~~L~--------------------------------~ki~v~iG~SgVGKSSLI 189 (352)
T PRK12289 155 ISVETGIGL-------------EALLEQLR--------------------------------NKITVVAGPSGVGKSSLI 189 (352)
T ss_pred EEcCCCCCH-------------HHHhhhhc--------------------------------cceEEEEeCCCCCHHHHH
Confidence 999998887 44554441 125799999999999999
Q ss_pred HHHHhCCCCcccccCCCc-------ccceEEEEecCCCccccCCceeecCCC
Q psy11743 324 RYLLERDFPGIHIGPEPT-------TDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 324 n~l~~~~~~~~~v~~~~~-------~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
|+|++.. ...++..++ ||++.....-.....++||||+..++.
T Consensus 190 N~L~~~~--~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 190 NRLIPDV--ELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDL 239 (352)
T ss_pred HHHcCcc--ccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccccc
Confidence 9999886 467777777 777666554333458999999999886
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-17 Score=171.00 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=77.8
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC--cEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD--KIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~--~vilVlN 209 (551)
+.....+++||||||+..+.... +.+.+...+..+|+||||+|+.. ..+..+..+++.+++.++ |+++|+|
T Consensus 225 ~l~~~~QIIFVDTPGIhk~~~~~------L~k~M~eqL~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~K~~PVILVVN 297 (741)
T PRK09866 225 LESYPGQLTLLDTPGPNEAGQPH------LQKMLNQQLARASAVLAVLDYTQ-LKSISDEEVREAILAVGQSVPLYVLVN 297 (741)
T ss_pred cccccCCEEEEECCCCCCccchH------HHHHHHHHHhhCCEEEEEEeCCC-CCChhHHHHHHHHHhcCCCCCEEEEEE
Confidence 33445789999999998643221 34445567999999999999986 677788888888887774 9999999
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDH-----QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+. +.+...+...+. .. ..+...++++||++|.++
T Consensus 298 KIDl~dreeddkE~Lle~V~~~L~--q~--~i~f~eIfPVSAlkG~ni 341 (741)
T PRK09866 298 KFDQQDRNSDDADQVRALISGTLM--KG--CITPQQIFPVSSMWGYLA 341 (741)
T ss_pred cccCCCcccchHHHHHHHHHHHHH--hc--CCCCceEEEEeCCCCCCH
Confidence 9999752 222222111110 11 234667899999999987
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=157.52 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=105.3
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcc-cccCCCCc
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLG-KVLQTPEV 239 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~-~l~~~~~~ 239 (551)
+...+..+++++|++++|+|+++. .......+ .....++|+++|+||+|+.+..............+. ...+....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~-~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDF-PGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccC-CCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 466777888999999999999862 22333333 222346899999999999753221111111100000 00022223
Q ss_pred eEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCCh
Q psy11743 240 ARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGK 319 (551)
Q Consensus 240 ~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gK 319 (551)
+++++||+++.|+ ++|++.+... +. .+.+++++|.|||||
T Consensus 101 ~i~~vSA~~~~gi-------------~eL~~~l~~~------------l~---------------~~~~~~~~G~~nvGK 140 (190)
T cd01855 101 DVILISAKKGWGV-------------EELINAIKKL------------AK---------------KGGDVYVVGATNVGK 140 (190)
T ss_pred cEEEEECCCCCCH-------------HHHHHHHHHH------------hh---------------cCCcEEEEcCCCCCH
Confidence 5789999998887 4555554211 10 246899999999999
Q ss_pred hHHHHHHHhCCC------CcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 320 TTFIRYLLERDF------PGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 320 ss~~n~l~~~~~------~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
||++|+|++... .+..++..||||+......-+..+.++||||+
T Consensus 141 StliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 141 STLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred HHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 999999998753 23688999999986664444447899999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=150.87 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=100.6
Q ss_pred CEEEEEEeCCCCCCChHHHHHHHH--HhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCC
Q psy11743 173 DRIILLFDAHKLDISDEFRRSIEA--LRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 173 D~il~VvDa~~~~~~~~~~~~l~~--l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
|+|++|+|++. +++..+..+.+. +...++|+++|+||+|+++++.+.. |...+... ...+.+.|+....
T Consensus 1 DvVl~VvDar~-p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~-~~~~~~~~-------~~~~~~~~~~~~~ 71 (172)
T cd04178 1 DVILEVLDARD-PLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEK-WLKYLRRE-------FPTVAFKASTQSQ 71 (172)
T ss_pred CEEEEEEECCC-CCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHH-HHHHHHhh-------CCEEEEEeccccc
Confidence 89999999996 566656666666 5556799999999999998765443 33333221 1223344443221
Q ss_pred C--CcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHHHh
Q psy11743 251 P--LVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 251 ~--~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~ 328 (551)
. +...... . +.....+... .......++-+.+++.... .....+.+++++|.|||||||++|.|.+
T Consensus 72 ~~~~~~~~~~-~-~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~vG~pnvGKSslin~l~~ 139 (172)
T cd04178 72 KKNLGQKSVK-V-EAASADLLRS----SVCFGADCLLKLLKNYSRN------KDIKTSITVGVVGFPNVGKSSLINSLKR 139 (172)
T ss_pred ccchhhcccc-c-chhhhhhhhh----ccccCHHHHHHHHHHHhhc------cccccCcEEEEEcCCCCCHHHHHHHHhC
Confidence 1 1000000 0 0000111111 1111122222223221110 1123467999999999999999999999
Q ss_pred CCCCcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 329 RDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 329 ~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
.. .+++++.||+|+..+....+.++.++||||+
T Consensus 140 ~~--~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 140 SR--ACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cc--cceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 87 5799999999997665555667899999996
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=146.32 Aligned_cols=147 Identities=22% Similarity=0.201 Sum_probs=90.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCC--CCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG--PEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~--~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|+++|++|||||||+|+|++.+....... +++|.+..... ...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~------------------------------~~~~~~- 50 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAY------------------------------LDLPSG- 50 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEE------------------------------EEecCC-
Confidence 589999999999999999998642212111 11121111000 000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-cEEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-KIRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~vilVlNK~Dl~ 214 (551)
..+.+|||||+.. +...+..++..+|++++|+|+++ +...+..+.+..+...+. |+++|+||+|+.
T Consensus 51 -~~~~~~DtpG~~~-----------~~~~~~~~~~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 -KRLGFIDVPGHEK-----------FIKNMLAGAGGIDLVLLVVAADE-GIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred -cEEEEEECCChHH-----------HHHHHHhhhhcCCEEEEEEECCC-CccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 4589999999743 44555667889999999999985 444444444444444444 899999999998
Q ss_pred CHHHHH---HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLM---RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~---~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...... +.+...+... +....+++++||+++.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 118 DEDWLELVEEEIRELLAGT----FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred CHHHHHHHHHHHHHHHHhc----CcCCCcEEEEeCCCCcCH
Confidence 653221 1222222111 112457899999999887
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=157.64 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=105.4
Q ss_pred HHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 162 TGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 162 ~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
....+.++.++|.+++|+|+.++..+.. ...++..+...+.|+++|+||+|+.+..+....+...+... ..+
T Consensus 27 ~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~-------g~~ 99 (245)
T TIGR00157 27 NELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNI-------GYQ 99 (245)
T ss_pred ceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHC-------CCe
Confidence 4444567899999999999986454443 34555566667899999999999986544332222222221 236
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||++|.|+ ++|++.+ ....++++|.||||||
T Consensus 100 v~~~SAktg~gi-------------~eLf~~l--------------------------------~~~~~~~~G~sgvGKS 134 (245)
T TIGR00157 100 VLMTSSKNQDGL-------------KELIEAL--------------------------------QNRISVFAGQSGVGKS 134 (245)
T ss_pred EEEEecCCchhH-------------HHHHhhh--------------------------------cCCEEEEECCCCCCHH
Confidence 788999998887 4454443 1237899999999999
Q ss_pred HHHHHHHhCCCCcccccCC-------CcccceEEEEecCCCccccCCceeecCCCCC
Q psy11743 321 TFIRYLLERDFPGIHIGPE-------PTTDRFIAVMYDEREGSVPGNALVVDPKKQF 370 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~-------~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~ 370 (551)
|++|+|++.. ...++.. .+||++.....- ....++||||+...+...
T Consensus 135 tLiN~L~~~~--~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 135 SLINALDPSV--KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGLWH 188 (245)
T ss_pred HHHHHHhhhh--hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCCCC
Confidence 9999999985 2333333 347775553332 356899999999887543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=165.61 Aligned_cols=154 Identities=22% Similarity=0.252 Sum_probs=104.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.-|+|||.||||||||+|+|++.+. .+...|.+|+.....+..... .
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~---------------------~----------- 206 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDD---------------------E----------- 206 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCC---------------------C-----------
Confidence 4799999999999999999999874 566677778777766543210 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC---CCChHHHHHHHHHhC-----CCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL---DISDEFRRSIEALRG-----HDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~---~~~~~~~~~l~~l~~-----~~~~vilVl 208 (551)
+.++++||||+..+..... .........++++|++++|+|++.. ........+++.+.. ..+|+++|+
T Consensus 207 ~~i~~vDtPGi~~~a~~~~----~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVl 282 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGA----GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVF 282 (390)
T ss_pred cEEEEEeCCCccccccchh----hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence 3489999999986432211 1233344578999999999998721 233344555565554 358999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+....++.+.+......++ ...+++++||+++.++
T Consensus 283 NKiDl~~~~el~~~l~~l~~~~~-----~~~~Vi~ISA~tg~GI 321 (390)
T PRK12298 283 NKIDLLDEEEAEERAKAIVEALG-----WEGPVYLISAASGLGV 321 (390)
T ss_pred eCCccCChHHHHHHHHHHHHHhC-----CCCCEEEEECCCCcCH
Confidence 99999876554333332221111 1125788999998887
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-16 Score=144.70 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=101.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|+|||||+|+|++.........+..+++....... ++ +
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-----~---------- 49 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE-----------------YD-----G---------- 49 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE-----------------EC-----C----------
Confidence 468999999999999999999998754333333333332211000 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchH--HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFT--GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~--~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+... .....+.. ......+..+|++++|+|+.+ +.+.....+...+...+.|+++|+||+|+
T Consensus 50 -~~~~iiDtpG~~~~~~--~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl 125 (174)
T cd01895 50 -KKYTLIDTAGIRRKGK--VEEGIEKYSVLRTLKAIERADVVLLVIDATE-GITEQDLRIAGLILEEGKALVIVVNKWDL 125 (174)
T ss_pred -eeEEEEECCCCccccc--hhccHHHHHHHHHHHHHhhcCeEEEEEeCCC-CcchhHHHHHHHHHhcCCCEEEEEecccc
Confidence 3488999999976321 11111111 123345689999999999986 66666667777777678999999999999
Q ss_pred CCH--HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDH--QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~--~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+. .............++ .....+++++||+.+.|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i 163 (174)
T cd01895 126 VEKDSKTMKEFKKEIRRKLP---FLDYAPIVFISALTGQGV 163 (174)
T ss_pred CCccHHHHHHHHHHHHhhcc---cccCCceEEEeccCCCCH
Confidence 865 332222222211122 223467899999998887
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-16 Score=143.83 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=103.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|+|||||+|+|+|.........+.+++.....+.... +
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~---------- 50 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD----------------------D---------- 50 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC----------------------C----------
Confidence 57899999999999999999999876443334444433333222111 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||||+....... ...+.......+..+|++++|+|+.. +.+.....+.+.+...+.|+++|+||+|+..
T Consensus 51 -~~~~liDtpG~~~~~~~~---~~~~~~~~~~~~~~~d~i~~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 51 -AQIIFVDTPGIHKPKKKL---GERMVKAAWSALKDVDLVLFVVDASE-PIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred -eEEEEEECCCCCcchHHH---HHHHHHHHHHHHHhCCEEEEEEECCC-ccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 348899999998643211 11133445567899999999999996 4566666777777777899999999999984
Q ss_pred -HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 -HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 -~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+...+. ...+.. ..+..+++.+|++.+.++
T Consensus 126 ~~~~~~~~-~~~~~~-----~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 126 DKEDLLPL-LEKLKE-----LGPFAEIFPISALKGENV 157 (168)
T ss_pred cHHHHHHH-HHHHHh-----ccCCCceEEEEeccCCCh
Confidence 3333322 222221 222457788999988887
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=145.12 Aligned_cols=146 Identities=21% Similarity=0.275 Sum_probs=98.6
Q ss_pred EEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCe
Q psy11743 60 MLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGI 139 (551)
Q Consensus 60 ~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~ 139 (551)
+++|.+|+|||||+|+|++.........+..|.+....... ..+ ..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~----------------------~~~-----------~~~ 47 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE----------------------WGG-----------REF 47 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE----------------------ECC-----------eEE
Confidence 57999999999999999998643333444333333211100 000 348
Q ss_pred EEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 140 SIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 140 ~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
.+|||||+.+... .....+.......+..+|++++|+|+.. +.+.....+...++..+.|+++|+||+|+......
T Consensus 48 ~i~DtpG~~~~~~---~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 48 ILIDTGGIEPDDE---GISKEIREQAELAIEEADVILFVVDGRE-GLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred EEEECCCCCCchh---HHHHHHHHHHHHHHHhCCEEEEEEeccc-cCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH
Confidence 9999999986322 1111234455667889999999999986 56666667778888788999999999999876543
Q ss_pred HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 220 MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....+.++. .+++.+|++++.|+
T Consensus 124 ----~~~~~~~~~------~~~~~~Sa~~~~gv 146 (157)
T cd01894 124 ----AAEFYSLGF------GEPIPISAEHGRGI 146 (157)
T ss_pred ----HHHHHhcCC------CCeEEEecccCCCH
Confidence 223333322 25688999998887
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-17 Score=164.10 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=126.9
Q ss_pred EEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 140 SIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 140 ~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
.+-+-||+.. ++.+++...+..+|+|+.|+|++. +.+.....+.+.+.. ++.++|+||+|+++....
T Consensus 13 ~i~~~~g~~~----------k~~~~~~~~~~~~d~vvevvDar~-P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~~~~ 79 (322)
T COG1161 13 KIQWFPGHMK----------KAKRQLKEVLKSVDVVVEVVDARD-PLGTRNPELERIVKE--KPKLLVLNKADLAPKEVT 79 (322)
T ss_pred cccCCCCchH----------HHHHHHHHhcccCCEEEEEEeccc-cccccCccHHHHHcc--CCcEEEEehhhcCCHHHH
Confidence 4555688764 267788899999999999999997 566666566666653 455999999999997653
Q ss_pred HHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCC
Q psy11743 220 MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYE 299 (551)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 299 (551)
+.|...+.+. .....+++++.++.+.. .+..++..+.. ..++.....+.
T Consensus 80 -~~W~~~~~~~------~~~~~~~v~~~~~~~~~-------------~i~~~~~~~~~----~~i~~~~~~~~------- 128 (322)
T COG1161 80 -KKWKKYFKKE------EGIKPIFVSAKSRQGGK-------------KIRKALEKLSE----EKIKRLKKKGL------- 128 (322)
T ss_pred -HHHHHHHHhc------CCCccEEEEeecccCcc-------------chHHHHHHHHH----HHHHHHhhcCC-------
Confidence 3344443222 13355788888877761 12221111100 11222221110
Q ss_pred ccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCC
Q psy11743 300 DADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 300 ~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
.....+++++|.|||||||+||+|.++. .+.++..||+|++.++..-+..+.|.||||+..|+..
T Consensus 129 ---~~~~~~v~vvG~PNVGKSslIN~L~~k~--~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 129 ---LKRKIRVGVVGYPNVGKSTLINRLLGKK--VAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred ---CccceEEEEEcCCCCcHHHHHHHHhccc--ceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCcc
Confidence 1134689999999999999999999998 5999999999999888887788999999999998844
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=145.17 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=108.3
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
+.+..+..+.++|++++|+|++. +....+..+...+...++|+++|+||+|+.+...... +.... .....+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~-~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~-------~~~~~~ 72 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARD-PELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEK-WKSIK-------ESEGIP 72 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCC-CcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHH-HHHHH-------HhCCCc
Confidence 34556667788999999999986 4444445666666666899999999999986543221 11111 112346
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||+++.|+ ++|.+.+... +. ......+++++|.+|+|||
T Consensus 73 ~~~iSa~~~~gi-------------~~L~~~l~~~------------~~------------~~~~~~~~~~ig~~~~Gks 115 (156)
T cd01859 73 VVYVSAKERLGT-------------KILRRTIKEL------------AK------------IDGKEGKVGVVGYPNVGKS 115 (156)
T ss_pred EEEEEccccccH-------------HHHHHHHHHH------------Hh------------hcCCCcEEEEECCCCCCHH
Confidence 789999988887 4455444211 10 0124568899999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCcee
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi 363 (551)
|++|.|.+.. ...+++.+++|+..+....+..+.++||||+
T Consensus 116 sl~~~l~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 116 SIINALKGRH--SASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred HHHHHHhCCC--ccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 9999999876 4678889999876654444557889999996
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=144.77 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=94.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|.+|||||||+|+|.+.+. .+...+++|++....... ++. ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~-----------------~~~---------------~~ 48 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVR-----------------VDD---------------GR 48 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEE-----------------cCC---------------CC
Confidence 489999999999999999998764 233334444443322111 000 02
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC-CCChHHHHHHHHHhC-----CCCcEEEEEcCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFRRSIEALRG-----HDDKIRIVLNKA 211 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~-~~~~~~~~~l~~l~~-----~~~~vilVlNK~ 211 (551)
.+.++||||+.+.... ..++.......+..+|++++|+|+++. ........+.+.+.. .++|+++|+||+
T Consensus 49 ~~~l~DtpG~~~~~~~----~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~ 124 (170)
T cd01898 49 SFVVADIPGLIEGASE----GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKI 124 (170)
T ss_pred eEEEEecCcccCcccc----cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEch
Confidence 5899999998642211 112333444556789999999999863 122333445554442 368999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.... ++.. ....+++.+||+.+.++
T Consensus 125 Dl~~~~~~~~~~~~-~~~~-----~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 125 DLLDEEELFELLKE-LLKE-----LWGKPVFPISALTGEGL 159 (170)
T ss_pred hcCCchhhHHHHHH-HHhh-----CCCCCEEEEecCCCCCH
Confidence 99875544332222 2111 12346788999998887
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=147.33 Aligned_cols=169 Identities=22% Similarity=0.258 Sum_probs=104.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC-CC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-SP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-~~ 134 (551)
...|+++|+.++|||||+++|++........+...+.... ..........+...+ ....... ..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~ti~------------~~~~~~~~~~ 67 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAF---LDKHPEERERGITID------------LSFISFEKNE 67 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCH---HHSSHHHHHCTSSSS------------SEEEEEEBTE
T ss_pred EEEEEEECCCCCCcEeechhhhhhcccccccccccccccc---ccccchhhhcccccc------------cccccccccc
Confidence 3679999999999999999999876321110000000000 000000000000000 0000000 11
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
-...+++|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+.|+++|+||+|+.
T Consensus 68 ~~~~i~~iDtPG~~~-----------f~~~~~~~~~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHED-----------FIKEMIRGLRQADIAILVVDAND-GIQPQTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp SSEEEEEEEESSSHH-----------HHHHHHHHHTTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred cccceeecccccccc-----------eeecccceecccccceeeeeccc-ccccccccccccccccccceEEeeeeccch
Confidence 115699999999854 67778888999999999999996 889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcc-ccc-CC-CCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLG-KVL-QT-PEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~-~l~-~~-~~~~~v~iSa~~g~~~ 252 (551)
. .+..+........+- ... .. ...|++++||++|.|+
T Consensus 136 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 136 E-KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGI 175 (188)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTH
T ss_pred h-hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCH
Confidence 3 333332222221221 111 11 3579999999999987
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=161.54 Aligned_cols=150 Identities=22% Similarity=0.235 Sum_probs=96.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++.+. .+...+++|.|..+.... +++.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~------------------------------~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLD------------------------------LPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEE------------------------------eCCC
Confidence 458999999999999999999999873 345556666655432111 1111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH---HHHHHHhCCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR---RSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~---~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.++||||+........-. .|. .+...+..||++++|+|++++....... .++..+...++|+++|+||+
T Consensus 237 --~~i~l~DT~G~~~~l~~~lie--~f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~ 311 (351)
T TIGR03156 237 --GEVLLTDTVGFIRDLPHELVA--AFR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKI 311 (351)
T ss_pred --ceEEEEecCcccccCCHHHHH--HHH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEee
Confidence 358999999985421111111 132 3445688999999999998633222222 23333333478999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...... .. . . ..+++++||++|.|+
T Consensus 312 Dl~~~~~v~~----~~---~---~--~~~~i~iSAktg~GI 340 (351)
T TIGR03156 312 DLLDEPRIER----LE---E---G--YPEAVFVSAKTGEGL 340 (351)
T ss_pred cCCChHhHHH----HH---h---C--CCCEEEEEccCCCCH
Confidence 9986543211 10 1 1 135789999999987
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=143.71 Aligned_cols=165 Identities=21% Similarity=0.165 Sum_probs=99.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|+|||||+|+|++......... ..++.... ........+.... ..+.++... ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~---~~ 62 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDG--TVEETFLD---VLKEERERGITIK----------SGVATFEWP---DR 62 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCC--ceeccccc---CCHHHHHcCCCee----------cceEEEeeC---CE
Confidence 489999999999999999999875321111 01110000 0000000000000 000001000 14
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.+.+|||||+.+ +......++..+|++++|+|+.. +......+++..+...+.|+++|+||+|+..++
T Consensus 63 ~~~liDtpG~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~ 130 (189)
T cd00881 63 RVNFIDTPGHED-----------FSSEVIRGLSVSDGAILVVDANE-GVQPQTREHLRIAREGGLPIIVAINKIDRVGEE 130 (189)
T ss_pred EEEEEeCCCcHH-----------HHHHHHHHHHhcCEEEEEEECCC-CCcHHHHHHHHHHHHCCCCeEEEEECCCCcchh
Confidence 589999999864 45566777889999999999986 666777777777777889999999999998743
Q ss_pred HHHHHHHHHHHHccccc----------CCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVL----------QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~----------~~~~~~~v~iSa~~g~~~ 252 (551)
+...........+.... .....+++++||+.|.|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi 175 (189)
T cd00881 131 DLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGV 175 (189)
T ss_pred cHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCH
Confidence 33222211111121110 123567899999999887
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=157.77 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=119.2
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-CC-CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCC
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-GH-DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPE 238 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~~-~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~ 238 (551)
|.+.++..++.+|+||.|+||++ +++....++-+++. .+ ++..|+|+||+|+++.+.+.+ |..++.+ .+
T Consensus 136 Y~ke~rkvve~sDVVleVlDARD-PlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~-Wl~YLr~-------~~ 206 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARD-PLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEK-WLVYLRR-------EG 206 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccC-CCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHH-HHHHHHh-------hC
Confidence 66778888999999999999997 66665556666653 33 489999999999999876544 4444422 22
Q ss_pred ceEEEecccCCCCCc--ccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecC
Q psy11743 239 VARVYIGSFWDQPLV--HDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYS 316 (551)
Q Consensus 239 ~~~v~iSa~~g~~~~--~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (551)
+.++|..+..+.+.. +.....-+ +.+.|++.+.++.+ ...-..-++++++|.||
T Consensus 207 ptv~fkast~~~~~~~~~~~~s~c~--gae~l~~~lgny~~----------------------~~~lk~sIrvGViG~PN 262 (435)
T KOG2484|consen 207 PTVAFKASTQMQNSNSKNLQSSVCF--GAETLMKVLGNYCR----------------------KGELKTSIRVGIIGYPN 262 (435)
T ss_pred Ccceeecccccccccccccccchhh--hHHHHHHHhcCccc----------------------ccccCcceEeeeecCCC
Confidence 344555554333320 00000001 11223333222211 11123568999999999
Q ss_pred CChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 317 TGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 317 ~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|||||+||+|..+. .|+++..||.|++.+..+.+..+.|+|.||+..+.
T Consensus 263 VGKSSvINsL~~~k--~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 263 VGKSSVINSLKRRK--ACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPS 311 (435)
T ss_pred CChhHHHHHHHHhc--cccCCCCccchhhhhheeccCCceeccCCceeecC
Confidence 99999999999998 59999999999999999999999999999999876
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=140.72 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=95.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|.|+|+|.+|+|||||+|+|++..+... ..+.+|.+......... . .. .
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~---------------~-------------~~--~ 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAE---------------V-------------LK--I 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecc---------------c-------------CC--c
Confidence 6799999999999999999998775321 11222221110000000 0 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||... +.......+..+|++++|+|+++ +...+....+..+...++|+++|+||+|+...
T Consensus 50 ~~~~iiDtpG~~~-----------~~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 50 PGITFIDTPGHEA-----------FTNMRARGASLTDIAILVVAADD-GVMPQTIEAIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred ceEEEEeCCCcHH-----------HHHHHHHHHhhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEEceecccc
Confidence 4589999999753 34445556789999999999986 44555556667777788999999999998743
Q ss_pred H--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 Q--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. .......... ....-......+++.+||..|.|+
T Consensus 118 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 118 NPERVKNELSELG-LQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred cHHHHHHHHHHhh-ccccccccCcCcEEEeecccCCCH
Confidence 2 1211111111 010000112357899999999887
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=136.91 Aligned_cols=116 Identities=29% Similarity=0.395 Sum_probs=83.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+|+|.+|+|||||+|+|++.+...+...++.|+........ +++ .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~----------------------~~~-----------~ 47 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFE----------------------YNN-----------K 47 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEE----------------------ETT-----------E
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeee----------------------ece-----------e
Confidence 5899999999999999999997765566666666555321100 011 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
.+.++||||+.++....... +........+..+|++++|+|+.. .....+.++++.++ .++|+++|+||
T Consensus 48 ~~~~vDtpG~~~~~~~~~~~--~~~~~~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 48 KFILVDTPGINDGESQDNDG--KEIRKFLEQISKSDLIIYVVDASN-PITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEESSSCSSSSHHHHHH--HHHHHHHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eEEEEeCCCCcccchhhHHH--HHHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 57899999998754322111 123334455599999999999886 55666778888887 88999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.8e-16 Score=146.48 Aligned_cols=102 Identities=24% Similarity=0.229 Sum_probs=77.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
.++.++||||+.+ |...+...+..+|++++|+|+.. +...+..+++..+...++| +++|+||+|+..
T Consensus 65 ~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 65 RHYAHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSATD-GPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred eEEEEEECcCHHH-----------HHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 4689999999853 67777888899999999999996 7888888889888888887 778999999975
Q ss_pred HHHHHHH----HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRV----YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~----~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++..+. +...+..++. ....++++++||++|.+.
T Consensus 133 ~~~~~~~~~~~i~~~l~~~g~--~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 133 DEELLELVEMEVRELLSKYGF--DGDNTPIVRGSALKALEG 171 (195)
T ss_pred cHHHHHHHHHHHHHHHHHhcc--cccCCeEEEeeCccccCC
Confidence 4433222 2222222333 223578999999999876
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-17 Score=162.48 Aligned_cols=184 Identities=14% Similarity=0.083 Sum_probs=117.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
+|+++|+||||||||+|+|.++++ +.+++.|+||+... ...++.++.|+||||+..+. . .+...+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~---~l~~~~~~~~ 73 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---H---SLNRLMMKEA 73 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---c---hHHHHHHHHH
Confidence 689999999999999999999983 67999999997432 33466778999999998753 1 2222233344
Q ss_pred hhhccccCccc-------c--------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 385 QCSLVNSPVLK-------G--------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 385 ~~~~~~~~~~~-------~--------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
..++..+|++. + ...+....+.++|+||+|+..+
T Consensus 74 ~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~------------------------------- 122 (270)
T TIGR00436 74 RSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK------------------------------- 122 (270)
T ss_pred HHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH-------------------------------
Confidence 55556665421 1 1112234666888888887210
Q ss_pred hhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCCCCC
Q psy11743 450 SVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTKFQ 529 (551)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 529 (551)
..+.+.+.... ....+.+..+++++.+.+.+.|.+.+.+..++.+ .+++.+.+ +|.|+++
T Consensus 123 ---------~~~~~~~~~~~-~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~----~~~~~~~~------t~~~~~~ 182 (270)
T TIGR00436 123 ---------DKLLPLIDKYA-ILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGP----FRYPEDYV------TDQPDRF 182 (270)
T ss_pred ---------HHHHHHHHHHH-hhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCC----CCCCCccc------CCCCHHH
Confidence 00000000000 0001113345566666665555554444444444 67788888 9999999
Q ss_pred ccchHHHHHHHHHhHhhhhhc
Q psy11743 530 TLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~ 550 (551)
.++|.+||++...+.+|+|.-
T Consensus 183 ~~~e~ire~~~~~~~~e~p~~ 203 (270)
T TIGR00436 183 KISEIIREKIIRYTKEEIPHS 203 (270)
T ss_pred HHHHHHHHHHHHhcccccCce
Confidence 999999999999999999963
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=156.31 Aligned_cols=155 Identities=23% Similarity=0.247 Sum_probs=100.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-...|+|||.||||||||+|+|++.+. .+...|.+|.+....+..-. ..
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~---------------------~~--------- 205 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVD---------------------DY--------- 205 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeC---------------------CC---------
Confidence 346799999999999999999998763 34455556655554432210 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
..++++||||+.++.... ..+.......++++|++++|+|+++....+....+...+.. .++|+++|+|
T Consensus 206 --~~~~i~D~PGli~ga~~~----~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~N 279 (335)
T PRK12299 206 --KSFVIADIPGLIEGASEG----AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLN 279 (335)
T ss_pred --cEEEEEeCCCccCCCCcc----ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEE
Confidence 358999999997643221 12344455667899999999999853323333455555543 3689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...........+ . . ....+++++||+++.++
T Consensus 280 KiDL~~~~~~~~~~~~~~-~-~----~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 280 KIDLLDEEEEREKRAALE-L-A----ALGGPVFLISAVTGEGL 316 (335)
T ss_pred CcccCCchhHHHHHHHHH-H-H----hcCCCEEEEEcCCCCCH
Confidence 999986543322111111 1 1 11246789999999988
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=139.91 Aligned_cols=151 Identities=19% Similarity=0.295 Sum_probs=91.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|+|+++|.+|+|||||+|+|++.... ....+.+|.+....... + ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~-----~~----------- 46 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFD-----------------Y-----KY----------- 46 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEc-----------------c-----Cc-----------
Confidence 68999999999999999999998752 12222333332211000 0 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchH-HHHHHHHhccCEEEEEEeCCCCCC-C-hHHHHHHHHHhCC--CCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFT-GVLEWFAERVDRIILLFDAHKLDI-S-DEFRRSIEALRGH--DDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~-~~~~~~~~~aD~il~VvDa~~~~~-~-~~~~~~l~~l~~~--~~~vilVlNK~ 211 (551)
..+.+|||||+.+.... .+. .+. .........+|++++|+|++.... + .....++..+... +.|+++|+||+
T Consensus 47 ~~~~i~Dt~G~~~~~~~--~~~-~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~ 123 (168)
T cd01897 47 LRWQVIDTPGLLDRPLE--ERN-TIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKI 123 (168)
T ss_pred eEEEEEECCCcCCcccc--CCc-hHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEcc
Confidence 35899999998642111 110 111 112222244799999999985221 1 2234566666554 78999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+........ . ..+. .....+++.+||++|.|+
T Consensus 124 Dl~~~~~~~~-~-~~~~------~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 124 DLLTFEDLSE-I-EEEE------ELEGEEVLKISTLTEEGV 156 (168)
T ss_pred ccCchhhHHH-H-HHhh------hhccCceEEEEecccCCH
Confidence 9987554332 1 1111 123346789999999998
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=141.34 Aligned_cols=104 Identities=26% Similarity=0.281 Sum_probs=73.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.+ +...+..++..+|++++|+|+.+ +.......++..+...+.|+++|+||+|+...
T Consensus 65 ~~~~l~DtpG~~~-----------~~~~~~~~~~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 65 TKINIVDTPGHAD-----------FGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPDA 132 (194)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 4589999999864 66677788999999999999986 55555556666666678999999999999643
Q ss_pred H--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 Q--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. ...+.....+..++........+++++||++|.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 133 RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred CHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccc
Confidence 2 22222333332333211222457899999999887
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=141.68 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=108.1
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
...+++..+++||++++|+|++. +....+..++..+. ++|+++|+||+|+.+.+.... +...+ +. ....
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~-~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~~~~~~-~~~~~-~~------~~~~ 77 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARI-PLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKK-WLKYF-ES------KGEK 77 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccC-ccCcCChhhHhHhc--CCCEEEEEehhhcCChHHHHH-HHHHH-Hh------cCCe
Confidence 46677888999999999999985 44444444555443 578999999999986543322 21111 11 1235
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
++++||+++.++ ++|.+.+...-.. .+ +.... ......++++++|.+|||||
T Consensus 78 vi~iSa~~~~gi-------------~~L~~~l~~~l~~-----~~----~~~~~------~~~~~~~~~~~~G~~~vGKs 129 (171)
T cd01856 78 VLFVNAKSGKGV-------------KKLLKAAKKLLKD-----IE----KLKAK------GLLPRGIRAMVVGIPNVGKS 129 (171)
T ss_pred EEEEECCCcccH-------------HHHHHHHHHHHHH-----Hh----hhhhc------ccCCCCeEEEEECCCCCCHH
Confidence 788999988877 4455444321100 00 00000 01124568999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
|++|+|.+..+ +.++..+++|+......-+..+.++||||+.
T Consensus 130 tlin~l~~~~~--~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 130 TLINRLRGKKV--AKVGNKPGVTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred HHHHHHhCCCc--eeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence 99999999874 5788999999755533333678899999974
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-16 Score=148.79 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=97.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.....|+++|.||||||||.|.++|.++..++..+.+||.+..++.+..+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e------------------------------ 119 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE------------------------------ 119 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc------------------------------
Confidence 34579999999999999999999999999999999999999888776542
Q ss_pred CCccCeEEEeCCCCCCCcccccc-cccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-CCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVD-RGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-HDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~-~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~~~~vilVlNK~ 211 (551)
.++.|.||||+......+.. ....+.+..+.++.+||++++|+|+++ .-......++..++. ...|.++|+||+
T Consensus 120 ---TQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys~ips~lvmnki 195 (379)
T KOG1423|consen 120 ---TQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA-TRTPLHPRVLHMLEEYSKIPSILVMNKI 195 (379)
T ss_pred ---eEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC-CcCccChHHHHHHHHHhcCCceeeccch
Confidence 45999999999875432211 011123356778999999999999984 223333344555443 368999999999
Q ss_pred CCCCHH
Q psy11743 212 DMVDHQ 217 (551)
Q Consensus 212 Dl~~~~ 217 (551)
|.+...
T Consensus 196 d~~k~k 201 (379)
T KOG1423|consen 196 DKLKQK 201 (379)
T ss_pred hcchhh
Confidence 998654
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=144.03 Aligned_cols=104 Identities=21% Similarity=0.192 Sum_probs=68.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.. +.......+..+|++++|+|+.. +......+.+......+.|+++|+||+|+...
T Consensus 68 ~~~~i~DtpG~~~-----------~~~~~~~~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 68 LQITLVDCPGHAS-----------LIRTIIGGAQIIDLMLLVVDATK-GIQTQTAECLVIGEILCKKLIVVLNKIDLIPE 135 (192)
T ss_pred ceEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 4689999999842 44555566788999999999986 55555544444444457899999999999854
Q ss_pred HHHHHHHHHHHHHccc-c--cCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGK-V--LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~-l--~~~~~~~~v~iSa~~g~~~ 252 (551)
.............++. + .+....+++++||++|.|+
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi 174 (192)
T cd01889 136 EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGE 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCH
Confidence 4322211111111110 0 0123457899999999988
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=153.71 Aligned_cols=154 Identities=23% Similarity=0.263 Sum_probs=98.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-...|+|||.+|||||||+|+|++... .+...|.+|+.....+.. ++.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~-----------------~~~-------------- 203 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVR-----------------VDD-------------- 203 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEE-----------------eCC--------------
Confidence 346899999999999999999998763 234445555544433221 100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC---CChHHHHHHHHHhC-----CCCcEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD---ISDEFRRSIEALRG-----HDDKIRI 206 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~---~~~~~~~~l~~l~~-----~~~~vil 206 (551)
...+.++||||+....... ..+.......++++|++++|+|++... .......+.+.+.. ..+|+++
T Consensus 204 -~~~~~i~D~PGli~~a~~~----~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~II 278 (329)
T TIGR02729 204 -GRSFVIADIPGLIEGASEG----AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIV 278 (329)
T ss_pred -ceEEEEEeCCCcccCCccc----ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEE
Confidence 0358999999997643221 123344455678999999999998531 22233344444432 3689999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+.+.....+........+ ..+++++||+++.++
T Consensus 279 V~NK~DL~~~~~~~~~~~~l~~~~-------~~~vi~iSAktg~GI 317 (329)
T TIGR02729 279 VLNKIDLLDEEELAELLKELKKAL-------GKPVFPISALTGEGL 317 (329)
T ss_pred EEeCccCCChHHHHHHHHHHHHHc-------CCcEEEEEccCCcCH
Confidence 999999987654333222221111 136789999999887
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=145.68 Aligned_cols=171 Identities=20% Similarity=0.181 Sum_probs=95.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCC--------CCCccc--eEEEEEeCCCccccCCCCccccccccccccccee
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG--------PEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQ 127 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~--------~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~ 127 (551)
+|+|+|++|+|||||+|+|++..-.+.... +..+.+ ....++.......-.|...+.. .....+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~--~~~~~~~~-- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVA--YRYFSTPK-- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecc--eeEEecCC--
Confidence 489999999999999999998764322100 011111 1111111111000011111100 00000111
Q ss_pred EEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-cEEE
Q psy11743 128 CSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-KIRI 206 (551)
Q Consensus 128 ~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~vil 206 (551)
.++.++||||+.+ +...+...+..+|++++|+|+.. +...+.......+...+. ++++
T Consensus 77 ---------~~~~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~-~~~~~~~~~~~~~~~~~~~~iIv 135 (208)
T cd04166 77 ---------RKFIIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARK-GVLEQTRRHSYILSLLGIRHVVV 135 (208)
T ss_pred ---------ceEEEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCCcEEE
Confidence 5689999999753 44556667899999999999986 666666555565655554 4777
Q ss_pred EEcCCCCCCH-HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 207 VLNKADMVDH-QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 207 VlNK~Dl~~~-~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
|+||+|+... .+........+..+....+.+..+++++||++|.|+.
T Consensus 136 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 136 AVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred EEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 9999999742 1111111111111111113334578999999999884
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=147.50 Aligned_cols=165 Identities=25% Similarity=0.339 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccC-CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc
Q psy11743 14 EMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFD-AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 92 (551)
Q Consensus 14 ~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~-~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt 92 (551)
++|.++.+-++++-.+ +.+|++.-.+-. .-+.++ ..|+|+|+|.||||||||+++|++.+ ..+.+.|.|
T Consensus 132 ~a~GR~aSiik~i~~~-L~fL~~~r~~l~------~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak---pEvA~YPFT 201 (346)
T COG1084 132 QAFGRVASIIKKIDDD-LEFLRKARDHLK------KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK---PEVAPYPFT 201 (346)
T ss_pred HHHHHHHHHHHHhhHH-HHHHHHHHHHHh------cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC---CccCCCCcc
Confidence 3445555555555333 445555522110 112334 56999999999999999999999988 367778877
Q ss_pred ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH-hc
Q psy11743 93 DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA-ER 171 (551)
Q Consensus 93 ~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~-~~ 171 (551)
++.+.|-|-+ +|. ..+.+|||||+.+.. ++...++..+.-.++ .-
T Consensus 202 TK~i~vGhfe---------------~~~----------------~R~QvIDTPGlLDRP---l~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 202 TKGIHVGHFE---------------RGY----------------LRIQVIDTPGLLDRP---LEERNEIERQAILALRHL 247 (346)
T ss_pred ccceeEeeee---------------cCC----------------ceEEEecCCcccCCC---hHHhcHHHHHHHHHHHHh
Confidence 7766654432 111 459999999999743 333333444444444 67
Q ss_pred cCEEEEEEeCCC-CCCChHH-HHHHHHHhC-CCCcEEEEEcCCCCCCHHHHHHH
Q psy11743 172 VDRIILLFDAHK-LDISDEF-RRSIEALRG-HDDKIRIVLNKADMVDHQQLMRV 222 (551)
Q Consensus 172 aD~il~VvDa~~-~~~~~~~-~~~l~~l~~-~~~~vilVlNK~Dl~~~~~~~~~ 222 (551)
.++|+|++|++. .+.+-+. ..+++.++. ...|+++|+||+|..+.+.+.+.
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~ 301 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEI 301 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHH
Confidence 899999999984 2344333 456666664 34689999999999977665443
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-16 Score=142.85 Aligned_cols=143 Identities=27% Similarity=0.413 Sum_probs=97.3
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCC-------------CCcccccccc------
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF-------------SPLDKFGKFG------ 119 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g-------------~~~~~~~~~g------ 119 (551)
|+|+|..++|||||||+|+|.++ .+.+..|+|..++.+.++........ ..+..+....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i--lp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI--LPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS 78 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS---SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhccc--CcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence 78999999999999999999986 56788899999999998865432211 1111111000
Q ss_pred -----cccccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HH
Q psy11743 120 -----NSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RS 193 (551)
Q Consensus 120 -----~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~ 193 (551)
..............+....+.||||||+.+.... ..+.+..++..+|++|+|+++.+ ..+..+. .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~-------~~~~~~~~~~~~d~vi~V~~~~~-~~~~~~~~~l 150 (168)
T PF00350_consen 79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE-------HTEITEEYLPKADVVIFVVDANQ-DLTESDMEFL 150 (168)
T ss_dssp HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT-------TSHHHHHHHSTTEEEEEEEETTS-TGGGHHHHHH
T ss_pred ccccccccccceeEEeeccccccceEEEeCCccccchhh-------hHHHHHHhhccCCEEEEEeccCc-ccchHHHHHH
Confidence 0111123445555666688999999999874322 23678888899999999999997 5555544 44
Q ss_pred HHHHhCCCCcEEEEEcCC
Q psy11743 194 IEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 194 l~~l~~~~~~vilVlNK~ 211 (551)
.+.+......+++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 455556667799999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=136.77 Aligned_cols=144 Identities=16% Similarity=0.226 Sum_probs=88.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|++..+. ....||... +.... .++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~---~~~~~t~~~~~~~~~------------------------------~~~~~- 47 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV---DEYDPTIEDSYRKQV------------------------------VIDGE- 47 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc---CCcCCcchheEEEEE------------------------------EECCE-
Confidence 57999999999999999999988752 122233221 11100 00000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.+|||||... +......++..+|++++|+|..+.........+...+. ..+.|+++|+||+
T Consensus 48 ~~~~~i~Dt~G~~~-----------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 48 TCLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEEEECCCCcc-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 02377899999754 45566678889999999999885211111222333332 3478999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+................. ..+.+.+||++|.|+
T Consensus 117 Dl~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 150 (162)
T cd04138 117 DLAARTVSSRQGQDLAKSY-------GIPYIETSAKTRQGV 150 (162)
T ss_pred ccccceecHHHHHHHHHHh-------CCeEEEecCCCCCCH
Confidence 9975321111111111111 236788999999988
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=157.70 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=98.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|||.||||||||+|+|++.+. .+...|.+|.+....+.... .
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~-----------------~-------------- 205 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAG-----------------D-------------- 205 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEEC-----------------C--------------
Confidence 446899999999999999999999764 34556666766654433211 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC----CChHHHHHHHHHh------------
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD----ISDEFRRSIEALR------------ 198 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~----~~~~~~~~l~~l~------------ 198 (551)
..++++||||+..+.... ..+.......++++|++++|+|++... .......+...|.
T Consensus 206 --~~f~laDtPGliegas~g----~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~ 279 (500)
T PRK12296 206 --TRFTVADVPGLIPGASEG----KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGL 279 (500)
T ss_pred --eEEEEEECCCCccccchh----hHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchh
Confidence 348999999997643221 112233455678999999999997421 1111222222221
Q ss_pred --CCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 199 --GHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 199 --~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
-..+|.++|+||+|+.+..++.+.....+... ..+++++||+++.|+
T Consensus 280 ~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~-------g~~Vf~ISA~tgeGL 328 (500)
T PRK12296 280 GDLAERPRLVVLNKIDVPDARELAEFVRPELEAR-------GWPVFEVSAASREGL 328 (500)
T ss_pred hhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 23689999999999976554433332222111 236899999999988
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=159.69 Aligned_cols=145 Identities=20% Similarity=0.244 Sum_probs=98.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++.+...+...+++|++.......- .+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~----------------------~g--------- 262 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL----------------------DG--------- 262 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE----------------------CC---------
Confidence 45899999999999999999999988766666777776654321110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.++||||+.+.. ..++. . -...+...+..+|++++|+|+++ +.+.+...++.. ..++|+++|+||+|+.
T Consensus 263 --~~i~l~DT~G~~~~~-~~ie~-~-gi~~~~~~~~~aD~il~VvD~s~-~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 263 --IPLRLIDTAGIRETD-DEVEK-I-GIERSREAIEEADLVLLVLDASE-PLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred --eEEEEEeCCCCCCCc-cHHHH-H-HHHHHHHHHHhCCEEEEEecCCC-CCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 348999999997522 11110 0 01234557899999999999986 445444444333 4578999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+..... .....+++.+||++|.|+
T Consensus 335 ~~~~~~--------------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 335 GEIDLE--------------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred ccchhh--------------hccCCceEEEEeeCCCCH
Confidence 643221 112236788999999887
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=135.76 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=94.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|+|||||+|+|++.........++.|.+....... +.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~----------- 48 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID----------------------IGG----------- 48 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE----------------------eCC-----------
Confidence 47999999999999999999998753333333333322211000 000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.++||||+.+.... .. ..........+.++|++++|+|+.+ ..+..+...... ..++|+++|+||+|+.+.
T Consensus 49 ~~~~i~DtpG~~~~~~~-~~--~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 49 IPVRLIDTAGIRETEDE-IE--KIGIERAREAIEEADLVLFVIDASR-GLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred EEEEEEECCCcCCCcch-HH--HHHHHHHHHHHhhCCEEEEEEECCC-CCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 35899999998763221 11 1112344566789999999999996 555555444443 457999999999999875
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
... .......+++.+||.++.++
T Consensus 123 ~~~-------------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 123 SEL-------------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred ccc-------------ccccCCCceEEEECCCCCCH
Confidence 432 01223457889999988877
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-15 Score=139.18 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=97.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC-CCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~-~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+.|+++|.+|+|||||+|+|++.+ .......++.|... .... .+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~~~------------------~~------------- 69 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-NFFE------------------VN------------- 69 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE-EEEe------------------cC-------------
Confidence 367899999999999999999999975 33222233222111 1100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh---ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE---RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~---~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.+|||||+..... .......+...+..++. .++++++|+|+.. +.+....++..++...+.|+++|+|
T Consensus 70 ----~~l~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~~~~~~iiv~n 143 (196)
T PRK00454 70 ----DKLRLVDLPGYGYAKV-SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKEYGIPVLIVLT 143 (196)
T ss_pred ----CeEEEeCCCCCCCcCC-CchHHHHHHHHHHHHHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHHcCCcEEEEEE
Confidence 3589999999764211 01111123334444443 4578899999885 5666666667777777899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+..+........+.. ...+++++||+++.++
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~~----~~~~~~~~Sa~~~~gi 182 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALKF----GDDEVILFSSLKKQGI 182 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHHh----cCCceEEEEcCCCCCH
Confidence 99998765443322111111111 1346788999998887
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-15 Score=139.92 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=91.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++..+. +...|+.|.+.... . +
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~-~------------------~---------------- 51 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHY-D------------------W---------------- 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEE-e------------------e----------------
Confidence 4579999999999999999999997742 33333333222110 0 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHH----HHhccCEEEEEEeCCCCC----------CChHHHHHHHHHhCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW----FAERVDRIILLFDAHKLD----------ISDEFRRSIEALRGH 200 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~----~~~~aD~il~VvDa~~~~----------~~~~~~~~l~~l~~~ 200 (551)
..+.+|||||+.....-.-.....+...+.. .+..+|++++|+|+.... ....+.++...+...
T Consensus 52 --~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (201)
T PRK04213 52 --GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL 129 (201)
T ss_pred --cceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc
Confidence 2389999999743111000001113333222 345678999999986411 112334556666667
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccc--cCCCCceEEEecccCCCCC
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKV--LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l--~~~~~~~~v~iSa~~g~~~ 252 (551)
+.|+++|+||+|+....+ +........++.. ......+++.+||++| |+
T Consensus 130 ~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi 180 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNRD--EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GI 180 (201)
T ss_pred CCCeEEEEECccccCcHH--HHHHHHHHHhcCCccccccCCcEEEEecccC-CH
Confidence 899999999999975431 1111222223320 0001135789999999 88
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=153.86 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=99.9
Q ss_pred HHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHH--HHHHHHHHHHcccccCCCCceEEEe
Q psy11743 168 FAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQL--MRVYGALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~--~~~~~~~~~~l~~l~~~~~~~~v~i 244 (551)
.+.++|.+++|++... .++... ..++..+...++|+++|+||+|+.+..+. ...+...+..+ ..+++++
T Consensus 117 iaANvD~vlIV~s~~p-~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-------g~~v~~v 188 (347)
T PRK12288 117 IAANIDQIVIVSAVLP-ELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-------GYRVLMV 188 (347)
T ss_pred EEEEccEEEEEEeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-------CCeEEEE
Confidence 4589999999999763 554433 45555566678999999999999875431 11111222112 2478899
Q ss_pred cccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHH
Q psy11743 245 GSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIR 324 (551)
Q Consensus 245 Sa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n 324 (551)
||.++.|+ ++|++.+. ..+++|+|.||||||||+|
T Consensus 189 SA~tg~Gi-------------deL~~~L~--------------------------------~ki~~~vG~sgVGKSTLiN 223 (347)
T PRK12288 189 SSHTGEGL-------------EELEAALT--------------------------------GRISIFVGQSGVGKSSLIN 223 (347)
T ss_pred eCCCCcCH-------------HHHHHHHh--------------------------------hCCEEEECCCCCCHHHHHH
Confidence 99988887 44544431 1247899999999999999
Q ss_pred HHHhCCCCcccccCCCc-------ccceEEEEecCCCccccCCceeecCCCC
Q psy11743 325 YLLERDFPGIHIGPEPT-------TDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 325 ~l~~~~~~~~~v~~~~~-------~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
+|++.. ...++..++ ||++..+..-+....++||||+..-+..
T Consensus 224 ~Ll~~~--~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~ 273 (347)
T PRK12288 224 ALLPEA--EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLW 273 (347)
T ss_pred Hhcccc--ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCC
Confidence 999986 356666654 5555554333344569999999987754
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=150.95 Aligned_cols=148 Identities=24% Similarity=0.238 Sum_probs=100.0
Q ss_pred HHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 168 FAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
.+.++|++++|+|+.++.+.... ..++..+...++|+++|+||+|+.+..+....+...+..++ .+++++||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g-------~~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIG-------YDVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCC-------CeEEEEeC
Confidence 46899999999999764444332 45666667778999999999999743322222222222222 36789999
Q ss_pred cCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHH
Q psy11743 247 FWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYL 326 (551)
Q Consensus 247 ~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l 326 (551)
+++.|+ ++|++.+ ...+++++|++||||||++|+|
T Consensus 150 ~~g~gi-------------~~L~~~l--------------------------------~gk~~~~~G~sgvGKStlin~l 184 (298)
T PRK00098 150 KEGEGL-------------DELKPLL--------------------------------AGKVTVLAGQSGVGKSTLLNAL 184 (298)
T ss_pred CCCccH-------------HHHHhhc--------------------------------cCceEEEECCCCCCHHHHHHHH
Confidence 988877 4444433 1347899999999999999999
Q ss_pred HhCCCCcccccCCC-------cccceEEEEecCCCccccCCceeecCCCC
Q psy11743 327 LERDFPGIHIGPEP-------TTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 327 ~~~~~~~~~v~~~~-------~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
++... ..++..+ .||+......-+....++||||+...+..
T Consensus 185 ~~~~~--~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~ 232 (298)
T PRK00098 185 APDLE--LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLH 232 (298)
T ss_pred hCCcC--CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCC
Confidence 98852 3333333 36665554333445689999999975544
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-16 Score=141.73 Aligned_cols=136 Identities=14% Similarity=0.115 Sum_probs=96.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
++|+++|+|||||||++|+|.|.. ..++.+||+|. ...+.+++.++.++|+||+++.. +.+.-++....++..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~---~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~-~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK---QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLS-SKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS---EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSS-SSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCC-CCCcHHHHHHHHHhh
Confidence 479999999999999999999999 78999999995 33466789999999999999875 456667777666652
Q ss_pred hhhhccccCc--------------ccccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPV--------------LKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
.+.|+ .....+.+..+|.|+|+||||+ ..+..+....+.+.+.|. +|
T Consensus 77 -----~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~------------a~~~g~~id~~~Ls~~Lg--~p 137 (156)
T PF02421_consen 77 -----EKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDE------------AERKGIEIDAEKLSERLG--VP 137 (156)
T ss_dssp -----TSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHH------------HHHTTEEE-HHHHHHHHT--S-
T ss_pred -----cCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHH------------HHHcCCEECHHHHHHHhC--CC
Confidence 22332 2345556678999999999999 333334344566666663 67
Q ss_pred hhhh--ccchH-HHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKL 465 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~ 465 (551)
++.+ +++++ ++|.++|
T Consensus 138 vi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHhhC
Confidence 7777 78888 8888765
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=137.12 Aligned_cols=144 Identities=16% Similarity=0.197 Sum_probs=89.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
++|+++|.+|||||||+|++++..+. ....||+. .... +..+. .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~-----------------~-------------- 47 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQIEVDG-----------------Q-------------- 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---cccCCchhhhEEEEEEECC-----------------E--------------
Confidence 58999999999999999999987752 12223322 1111 11100 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|..+.........+...+.+ .+.|+++|+||
T Consensus 48 -~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (163)
T cd04136 48 -QCMLEILDTAGTEQ-----------FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNK 115 (163)
T ss_pred -EEEEEEEECCCccc-----------cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 02478999999754 444556678899999999999852222223344444432 36899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+...........+. ... ..+.+.+||++|.|+
T Consensus 116 ~Dl~~~~~~~~~~~~~~~-~~~-----~~~~~~~Sa~~~~~v 151 (163)
T cd04136 116 CDLEDERVVSREEGQALA-RQW-----GCPFYETSAKSKINV 151 (163)
T ss_pred ccccccceecHHHHHHHH-HHc-----CCeEEEecCCCCCCH
Confidence 998753322111111111 111 146789999999887
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-15 Score=135.29 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=88.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|+|||||+|++++..+. ...+.++++....... +.+ . .
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~------~~~----------~---------------~ 49 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCE------IDG----------Q---------------W 49 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEE------ECC----------E---------------E
Confidence 58999999999999999999987642 2222222222211000 000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+||+|
T Consensus 50 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 118 (164)
T cd04145 50 AILDILDTAGQEE-----------FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKAD 118 (164)
T ss_pred EEEEEEECCCCcc-----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcc
Confidence 2478999999764 45566677899999999999985221112233333332 34689999999999
Q ss_pred CCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+........ ......... ..+.+.+||++|.|+
T Consensus 119 l~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 152 (164)
T cd04145 119 LEHQRKVSREEGQELARKL-------KIPYIETSAKDRLNV 152 (164)
T ss_pred ccccceecHHHHHHHHHHc-------CCcEEEeeCCCCCCH
Confidence 975432211 111112111 125788999999988
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-15 Score=140.54 Aligned_cols=151 Identities=22% Similarity=0.250 Sum_probs=91.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|.+|||||||+|+|++.... ....+.+|.+....... + ++.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~-------------~~~ 88 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLR-----------------L-------------PDG 88 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEE-----------------e-------------cCC
Confidence 4589999999999999999999998642 22223333322211100 0 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hCCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RGHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~~~~~vilVlNK~ 211 (551)
..+.+|||||+.+....... ..+. .....+..+|++++|+|++..........+.+.+ ...++|+++|+||+
T Consensus 89 --~~~~i~Dt~G~~~~~~~~~~--~~~~-~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~ 163 (204)
T cd01878 89 --REVLLTDTVGFIRDLPHQLV--EAFR-STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKI 163 (204)
T ss_pred --ceEEEeCCCccccCCCHHHH--HHHH-HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcc
Confidence 25899999998653211110 0122 2234467899999999998633222222333333 33468999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..... ... .....+++++||+++.|+
T Consensus 164 Dl~~~~~~~----~~~-------~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 164 DLLDDEELE----ERL-------EAGRPDAVFISAKTGEGL 193 (204)
T ss_pred ccCChHHHH----HHh-------hcCCCceEEEEcCCCCCH
Confidence 998755432 111 112346889999999887
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-15 Score=136.32 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=88.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCC--CC-CCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFP--GI-HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~--~~-~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.|+++|.+|+|||||+|+|++.... +. .....||...... .+. ++ +
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~----------------~~~-~~-----~--------- 49 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG----------------TIE-VG-----N--------- 49 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE----------------EEE-EC-----C---------
Confidence 3899999999999999999875421 00 1111222111100 000 00 1
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||||+.. +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||
T Consensus 50 --~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 116 (167)
T cd04160 50 --ARLKFWDLGGQES-----------LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANK 116 (167)
T ss_pred --EEEEEEECCCChh-----------hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEc
Confidence 4589999999864 45566677899999999999985221122223333322 247899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ ....+.......+....+++.+||++|.|+
T Consensus 117 ~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 117 QDLPDALSVEE-IKEVFQDKAEEIGRRDCLVLPVSALEGTGV 157 (167)
T ss_pred cccccCCCHHH-HHHHhccccccccCCceEEEEeeCCCCcCH
Confidence 99865422111 111111111001223457899999999987
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=136.61 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=66.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.+ +...+..++..+|++++|+|+++ +.+.+....+..+...++|+++|+||+|+...
T Consensus 67 ~~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 67 YLLNLIDTPGHVD-----------FSYEVSRSLAACEGALLLVDATQ-GVEAQTLANFYLALENNLEIIPVINKIDLPSA 134 (179)
T ss_pred EEEEEEECCCChh-----------hHHHHHHHHHhcCeEEEEEECCC-CccHhhHHHHHHHHHcCCCEEEEEECCCCCcC
Confidence 3478999999865 55667778899999999999986 55555444444444567899999999998642
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.. .+........++ .+...++.+||++|.|+
T Consensus 135 ~~-~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi 165 (179)
T cd01890 135 DP-ERVKQQIEDVLG----LDPSEAILVSAKTGLGV 165 (179)
T ss_pred CH-HHHHHHHHHHhC----CCcccEEEeeccCCCCH
Confidence 21 111111111122 22235789999999988
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-15 Score=153.27 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=100.3
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH----HHHHHHHHHHHHcccccCC
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ----QLMRVYGALMWSLGKVLQT 236 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~----~~~~~~~~~~~~l~~l~~~ 236 (551)
|.+.+.......++|++|+|+.+. .......+.+.. .++|+++|+||+|+.+.. ...+.........+ .
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~-~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g----~ 131 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDF-NGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELG----L 131 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccC-CCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcC----C
Confidence 555444433344499999999862 222332333332 268999999999998632 12221122122222 2
Q ss_pred CCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecC
Q psy11743 237 PEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYS 316 (551)
Q Consensus 237 ~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (551)
....++.+||+++.++ ++|++.+..+. ....++++|.||
T Consensus 132 ~~~~v~~vSAk~g~gI-------------~eL~~~I~~~~----------------------------~~~~v~vvG~~N 170 (365)
T PRK13796 132 RPVDVVLISAQKGHGI-------------DELLEAIEKYR----------------------------EGRDVYVVGVTN 170 (365)
T ss_pred CcCcEEEEECCCCCCH-------------HHHHHHHHHhc----------------------------CCCeEEEEcCCC
Confidence 2235788999988887 45555542110 124789999999
Q ss_pred CChhHHHHHHHhCCC---CcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 317 TGKTTFIRYLLERDF---PGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 317 ~gKss~~n~l~~~~~---~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|||||++|+|++... ..+.++..||||+......-+....++||||+..+.
T Consensus 171 vGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~~~ 224 (365)
T PRK13796 171 VGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIHRH 224 (365)
T ss_pred CcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccccc
Confidence 999999999997531 135689999999865543333446899999998654
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-16 Score=158.63 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=75.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEE--EEecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~--~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..++.++|+|+|||||||++|+|.+++ .+.|++.||||| .+. ++..|.++.|+||+|++. +....+++.|.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~d--rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe--~~~~~iE~~gI-- 339 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRED--RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--ESNDGIEALGI-- 339 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCC--ceEeCCCCCcchhhheeEeecCCeEEEEEecccccc--ccCChhHHHhH--
Confidence 357899999999999999999999999 699999999998 444 567899999999999998 46678999998
Q ss_pred HhhhhhhccccCcc
Q psy11743 381 LNRFQCSLVNSPVL 394 (551)
Q Consensus 381 ~~~~~~~~~~~~~~ 394 (551)
.|++++++++|+.
T Consensus 340 -~rA~k~~~~advi 352 (531)
T KOG1191|consen 340 -ERARKRIERADVI 352 (531)
T ss_pred -HHHHHHHhhcCEE
Confidence 9999999999974
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=154.50 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=107.5
Q ss_pred chHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH----HHHHHHHHHHHHcccccC
Q psy11743 160 DFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ----QLMRVYGALMWSLGKVLQ 235 (551)
Q Consensus 160 ~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~----~~~~~~~~~~~~l~~l~~ 235 (551)
+|.+.+..+...++++++|+|+.+ .......++.+.+. ++|+++|+||+|+++.. .+.+.........+
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d-~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g---- 124 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFD-FEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG---- 124 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcC-CCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC----
Confidence 367777777789999999999985 23333334444432 68999999999998642 22221112222222
Q ss_pred CCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeec
Q psy11743 236 TPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQY 315 (551)
Q Consensus 236 ~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (551)
.....++.+||+++.|+ ++|++.+..+ . ....++++|.+
T Consensus 125 ~~~~~i~~vSAk~g~gv-------------~eL~~~l~~~------------------~----------~~~~v~~vG~~ 163 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGI-------------DELLDKIKKA------------------R----------NKKDVYVVGVT 163 (360)
T ss_pred CCcCcEEEecCCCCCCH-------------HHHHHHHHHH------------------h----------CCCeEEEECCC
Confidence 22224788999998887 4555554211 0 12479999999
Q ss_pred CCChhHHHHHHHhCCC---CcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 316 STGKTTFIRYLLERDF---PGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 316 ~~gKss~~n~l~~~~~---~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
||||||++|+|++... ..+.++..||||+......-+....++||||+..+.
T Consensus 164 nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~ 218 (360)
T TIGR03597 164 NVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH 218 (360)
T ss_pred CCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh
Confidence 9999999999998742 136789999999855433334567899999998753
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=136.57 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=89.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE--EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA--VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~--i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||+|++++..+. ....||...... +.... +
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~~~~~~~----------------~--------------- 47 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR---ESYIPTIEDTYRQVISCSK----------------N--------------- 47 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---CCcCCcchheEEEEEEECC----------------E---------------
Confidence 57999999999999999999988752 122223221111 00000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCcEEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDKIRIVL 208 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~vilVl 208 (551)
...+.++||||... +......++..+|++++|+|..+.........++..+.+ .+.|+++|+
T Consensus 48 -~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (165)
T cd04140 48 -ICTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVG 115 (165)
T ss_pred -EEEEEEEECCCCCc-----------chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 03488999999864 344455677899999999999863222233444444432 468999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..++..... ..+... ...+.+.+||++|.|+
T Consensus 116 nK~Dl~~~~~v~~~~~-~~~~~~-----~~~~~~e~SA~~g~~v 153 (165)
T cd04140 116 NKCDESHKREVSSNEG-AACATE-----WNCAFMETSAKTNHNV 153 (165)
T ss_pred ECccccccCeecHHHH-HHHHHH-----hCCcEEEeecCCCCCH
Confidence 9999975322211111 111111 1235678999999987
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-15 Score=134.41 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=87.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|+|++..+.. . .||.... ..+. + +..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~--~~t~~~~~~~~~------------------~-------------~~~-- 43 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--T--IPTVGFNVEMLQ------------------L-------------EKH-- 43 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--c--cCccCcceEEEE------------------e-------------CCc--
Confidence 48999999999999999999987532 1 2232111 0000 0 000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHH-HHHHHhC---CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRR-SIEALRG---HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~---~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+++......... +...+.. .+.|+++|+||+|
T Consensus 44 ~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 44 LSLTVWDVGGQEK-----------MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred eEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcc
Confidence 3489999999753 44455667889999999999986221122222 2233322 4789999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+ ....+ .+.........+++.+||++|.|+
T Consensus 113 l~~~~~~~~-i~~~~-~~~~~~~~~~~~~~~~Sa~~~~gv 150 (160)
T cd04156 113 LPGALTAEE-ITRRF-KLKKYCSDRDWYVQPCSAVTGEGL 150 (160)
T ss_pred cccCcCHHH-HHHHc-CCcccCCCCcEEEEecccccCCCh
Confidence 864211111 11111 111111223346788999999988
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-16 Score=158.36 Aligned_cols=186 Identities=13% Similarity=0.125 Sum_probs=119.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
+..+++++|.|||||||++|.|++..+ ..+++.++||+.. .+..++.++.++||||+..+. .. +...+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~---~~---l~~~~~ 122 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK---GS---LEKAMV 122 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc---cc---HHHHHH
Confidence 446899999999999999999999885 5788999999732 355678899999999997643 12 222233
Q ss_pred hhhhhhccccCccc-------c---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 382 NRFQCSLVNSPVLK-------G---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 382 ~~~~~~~~~~~~~~-------~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
..+..++..+|++. + ...+....+.|+|+||+|++-+ ....+.+.+.
T Consensus 123 r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-----------------~~~~~~~~l~ 185 (339)
T PRK15494 123 RCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-----------------YLNDIKAFLT 185 (339)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-----------------cHHHHHHHHH
Confidence 33444455555421 0 0011123345667777776200 0011111111
Q ss_pred hccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCC
Q psy11743 446 KDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDF 525 (551)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 525 (551)
....+....+++++.+.+.+.|.+.+...+++.+ .+++.+.+ +|.
T Consensus 186 -------------------------~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~----~~~~~~~~------td~ 230 (339)
T PRK15494 186 -------------------------ENHPDSLLFPISALSGKNIDGLLEYITSKAKISP----WLYAEDDI------TDL 230 (339)
T ss_pred -------------------------hcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC----CCCCCCCC------CCC
Confidence 0111123445666666666555555444445555 88889999 999
Q ss_pred CCCCccchHHHHHHHHHhHhhhhhc
Q psy11743 526 TKFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
|.+|.++|.+||++...+++|||+-
T Consensus 231 ~~~~~~~eiiRe~~~~~~~~EiP~~ 255 (339)
T PRK15494 231 PMRFIAAEITREQLFLNLQKELPYK 255 (339)
T ss_pred CHHHHHHHHHHHHHHhhCCcccCce
Confidence 9999999999999999999999973
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=133.77 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=89.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||++++++..+.. ...+|...... .+. . .++.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~---~~~~~~~~~~~-~~~---~-----------~~~~~--------------~ 48 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP---QQLSTYALTLY-KHN---A-----------KFEGK--------------T 48 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---CcCCceeeEEE-EEE---E-----------EECCE--------------E
Confidence 369999999999999999999877531 11122111000 000 0 00000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC-hHHHHHHHHHhCC--CCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-DEFRRSIEALRGH--DDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~-~~~~~~l~~l~~~--~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++++|+|+++ ..+ .....++..+++. +.|+++|+||+|+
T Consensus 49 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 49 ILVDFWDTAGQER-----------FQTMHASYYHKAHACILVFDVTR-KITYKNLSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEEeCCCchh-----------hhhhhHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCcEEEEEECccC
Confidence 2478999999754 55566778899999999999985 322 2234566656543 6899999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... .+. . .+. .. ...+.+.+||++|.|+
T Consensus 117 ~~~~~-~~~-~-~~~-~~-----~~~~~~~~Sa~~~~gv 146 (161)
T cd04124 117 DPSVT-QKK-F-NFA-EK-----HNLPLYYVSAADGTNV 146 (161)
T ss_pred chhHH-HHH-H-HHH-HH-----cCCeEEEEeCCCCCCH
Confidence 53211 111 1 111 11 1236788999999988
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=136.21 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+|+|++..+.. ..||... ...+. ++ +
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~----~~~t~g~~~~~~~------------------~~-----~-------- 57 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT----ISPTLGFQIKTLE------------------YE-----G-------- 57 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC----cCCccccceEEEE------------------EC-----C--------
Confidence 45789999999999999999999885421 1122110 00000 00 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+ . ..+.|+++|+|
T Consensus 58 ---~~l~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~n 123 (173)
T cd04154 58 ---YKLNIWDVGGQKT-----------LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILAN 123 (173)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 3489999999754 3445566789999999999998621111222233222 2 25789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ ....+. +.. ......+++.+||++|.|+
T Consensus 124 K~Dl~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 124 KQDLPGALSEEE-IREALE-LDK-ISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred CcccccCCCHHH-HHHHhC-ccc-cCCCceEEEeccCCCCcCH
Confidence 999975321111 122211 110 1223457899999999988
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-15 Score=155.09 Aligned_cols=151 Identities=21% Similarity=0.195 Sum_probs=95.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..|.|+++|.+|||||||+|+|++.+.. +...+++|.+..+.-..- .+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l----------------~~--------------- 243 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDV----------------AD--------------- 243 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEe----------------CC---------------
Confidence 3489999999999999999999998864 455666666654321110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH----HHHHHHhCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR----RSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~----~~l~~l~~~~~~vilVlNK 210 (551)
...+.++||||+........- ..|. .+...+..||++|+|+|+++ +.+.... .++..+...++|+++|+||
T Consensus 244 -~~~~~l~DTaG~~r~lp~~lv--e~f~-~tl~~~~~ADlIL~VvDaS~-~~~~e~l~~v~~iL~el~~~~~pvIiV~NK 318 (426)
T PRK11058 244 -VGETVLADTVGFIRHLPHDLV--AAFK-ATLQETRQATLLLHVVDAAD-VRVQENIEAVNTVLEEIDAHEIPTLLVMNK 318 (426)
T ss_pred -CCeEEEEecCcccccCCHHHH--HHHH-HHHHHhhcCCEEEEEEeCCC-ccHHHHHHHHHHHHHHhccCCCCEEEEEEc
Confidence 024789999998542111111 1122 34456789999999999986 3333332 3444444457899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... . ... ... +.+ ..+++||++|.|+
T Consensus 319 iDL~~~~~~-~-~~~--~~~----~~~--~~v~ISAktG~GI 350 (426)
T PRK11058 319 IDMLDDFEP-R-IDR--DEE----NKP--IRVWLSAQTGAGI 350 (426)
T ss_pred ccCCCchhH-H-HHH--Hhc----CCC--ceEEEeCCCCCCH
Confidence 999753211 1 111 111 111 2478999999988
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-15 Score=136.07 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=89.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||+++|++..+.. ...+|.. .+. .+..+. .
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~-----------------~------------- 49 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE---SYISTIGVDFKIRTIELDG-----------------K------------- 49 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEECC-----------------E-------------
Confidence 579999999999999999999887532 2222221 111 111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+.+ .+.|+++|+||
T Consensus 50 --~~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK 116 (166)
T cd01869 50 --TIKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 116 (166)
T ss_pred --EEEEEEEECCCcHh-----------HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 02478999999653 455666778999999999999863222222344444433 35799999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+. +........ ...+.+.+||++|.|+
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v 152 (166)
T cd01869 117 CDLTDKRVVDYSEAQEFADE-------LGIPFLETSAKNATNV 152 (166)
T ss_pred hhcccccCCCHHHHHHHHHH-------cCCeEEEEECCCCcCH
Confidence 9986543221 111111111 1236789999999988
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=151.78 Aligned_cols=149 Identities=20% Similarity=0.235 Sum_probs=95.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
..|+|+|.||||||||+|+|++.+. .+...|.+|......+..- .. .
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~-----------------~~----~----------- 205 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVET-----------------DD----G----------- 205 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEE-----------------eC----C-----------
Confidence 4899999999999999999998773 2344455555544332110 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC---CCChHHHHHHHHHhC-----CCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL---DISDEFRRSIEALRG-----HDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~---~~~~~~~~~l~~l~~-----~~~~vilVl 208 (551)
..++++||||+..+... +..+.......++++|++++|+|++.. ........+.+.+.. .++|.++|+
T Consensus 206 ~~~~laD~PGliega~~----~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~ 281 (424)
T PRK12297 206 RSFVMADIPGLIEGASE----GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA 281 (424)
T ss_pred ceEEEEECCCCcccccc----cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence 45899999999763321 111333344557889999999999742 222333455555543 368999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+....+. +......++ .+++++||+++.|+
T Consensus 282 NK~DL~~~~e~---l~~l~~~l~-------~~i~~iSA~tgeGI 315 (424)
T PRK12297 282 NKMDLPEAEEN---LEEFKEKLG-------PKVFPISALTGQGL 315 (424)
T ss_pred eCCCCcCCHHH---HHHHHHHhC-------CcEEEEeCCCCCCH
Confidence 99998543221 111111121 36788999999987
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-15 Score=135.25 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=87.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|+|++..+.. ...+|+ +....... .+. . .
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~-----------------~~~-------------~-~ 47 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD---DYDPTIEDSYRKQIE-----------------IDG-------------E-V 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc---ccCCchhhhEEEEEE-----------------ECC-------------E-E
Confidence 79999999999999999999987532 222222 22111000 000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+||+|
T Consensus 48 ~~l~i~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~D 116 (164)
T smart00173 48 CLLDILDTAGQEE-----------FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCD 116 (164)
T ss_pred EEEEEEECCCccc-----------chHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 2478999999764 44455667889999999999985221122223333332 34689999999999
Q ss_pred CCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+..... +......... ..+.+.+||++|.|+
T Consensus 117 l~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 150 (164)
T smart00173 117 LESERVVSTEEGKELARQW-------GCPFLETSAKERVNV 150 (164)
T ss_pred ccccceEcHHHHHHHHHHc-------CCEEEEeecCCCCCH
Confidence 97532211 1111111111 246789999999988
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-15 Score=135.48 Aligned_cols=145 Identities=15% Similarity=0.183 Sum_probs=90.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eE-EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|.+|+|||||+++|++..+.. ...+|.. .. ..+..+. .
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~-----------------~------------ 50 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE---RQGNTIGVDFTMKTLEIEG-----------------K------------ 50 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc---cCCCccceEEEEEEEEECC-----------------E------------
Confidence 4789999999999999999999876521 1122211 11 1111000 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlN 209 (551)
-..+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 51 ---~~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 116 (165)
T cd01864 51 ---RVKLQIWDTAGQER-----------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGN 116 (165)
T ss_pred ---EEEEEEEECCChHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 02478999999643 455666778899999999999863222233455555543 4678999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+....+.. +........ ......+.+||++|.|+
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v 154 (165)
T cd01864 117 KCDLEEQREVLFEEACTLAEK------NGMLAVLETSAKESQNV 154 (165)
T ss_pred CcccccccccCHHHHHHHHHH------cCCcEEEEEECCCCCCH
Confidence 99997543211 111111111 11235688999999887
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=140.68 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=83.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
+.+++|||||+.. +.+.+...+. .+|++++|+|+.. +....+.+++.++...++|+++|+||+|+.
T Consensus 84 ~~i~liDtpG~~~-----------~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 84 KLVTFIDLAGHER-----------YLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred cEEEEEECCCcHH-----------HHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 4689999999854 5555555553 7999999999986 788999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHccc----------------------ccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhh
Q psy11743 215 DHQQLMRVYGALMWSLGK----------------------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDL 272 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~----------------------l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i 272 (551)
+.....+........+.. ......+|++.+||.+|.|+ ++|.+.+
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi-------------~~L~~~L 218 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGL-------------DLLHAFL 218 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCH-------------HHHHHHH
Confidence 765544433333222221 01223458899999999988 5666666
Q ss_pred hcch
Q psy11743 273 QSLP 276 (551)
Q Consensus 273 ~~~~ 276 (551)
..+|
T Consensus 219 ~~lp 222 (224)
T cd04165 219 NLLP 222 (224)
T ss_pred HhcC
Confidence 5443
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-15 Score=135.19 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=89.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eE--EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RF--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||+|+|++..+... ..||.. .+ ..+... +.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~------------- 48 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA---FVSTVGIDFKVKTVFRN-----------------DK------------- 48 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeEEEEEEEEEC-----------------CE-------------
Confidence 5799999999999999999999875321 112221 11 011000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|..+........+++..+.. ...|+++|+||
T Consensus 49 --~~~~~l~Dt~g~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 49 --RVKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred --EEEEEEEECCChHH-----------HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 02488999999753 444556778999999999999853222223445555543 35789999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..... +........++ .+.+.+||++|.|+
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv 151 (165)
T cd01865 116 CDMEDERVVSSERGRQLADQLG-------FEFFEASAKENINV 151 (165)
T ss_pred cccCcccccCHHHHHHHHHHcC-------CEEEEEECCCCCCH
Confidence 9997543211 11111111121 25788999999988
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-15 Score=146.92 Aligned_cols=196 Identities=20% Similarity=0.266 Sum_probs=144.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
...|+++|+||||||||+|+|+|++. +.||+.|+|||+.. ++.++.|+.|+||||++.|+ .+++..+..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk------~~l~~~m~~ 77 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK------HALGELMNK 77 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc------hHHHHHHHH
Confidence 45789999999999999999999994 89999999998443 55689999999999999886 344444446
Q ss_pred hhhhhccccCcccccccccccceeEEE-ecc-cCCCCccchhhhhhhhhccChhhHHHHHHHHHHh-ccchhhh--ccc-
Q psy11743 383 RFQCSLVNSPVLKGKVLQTPEVARVYI-GSF-WDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK-DMPSVFG--KEG- 456 (551)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~-wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-~~~~~~~--~~~- 456 (551)
.+..++.++|++ .++| +.. |.. ..+.+.+.|+. ..|++.+ +..
T Consensus 78 ~a~~sl~dvDli-----------lfvvd~~~~~~~--------------------~d~~il~~lk~~~~pvil~iNKID~ 126 (298)
T COG1159 78 AARSALKDVDLI-----------LFVVDADEGWGP--------------------GDEFILEQLKKTKTPVILVVNKIDK 126 (298)
T ss_pred HHHHHhccCcEE-----------EEEEeccccCCc--------------------cHHHHHHHHhhcCCCeEEEEEcccc
Confidence 666677776643 2222 222 332 33445555543 2355554 111
Q ss_pred hH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCCCCCccchHH
Q psy11743 457 KK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTKFQTLRPRL 535 (551)
Q Consensus 457 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 535 (551)
-. +..+..+.+.+.....+..+.|++++++.+.+.|.+.+...+++.+ .|++.|.+ +|.|++|.++|.+
T Consensus 127 ~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~----~~yp~d~i------tD~~~rf~~aEii 196 (298)
T COG1159 127 VKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP----WYYPEDQI------TDRPERFLAAEII 196 (298)
T ss_pred CCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCC----CcCChhhc------cCChHHHHHHHHH
Confidence 11 2312233333444555678889999999999999999888888888 99999999 9999999999999
Q ss_pred HHHHHHHhHhhhhhc
Q psy11743 536 IEVADKMLAEDIAHL 550 (551)
Q Consensus 536 ~~~~~~~~~~~~~~~ 550 (551)
||++..++++|||+-
T Consensus 197 REk~~~~l~eElPhs 211 (298)
T COG1159 197 REKLLLLLREELPHS 211 (298)
T ss_pred HHHHHHhcccccCce
Confidence 999999999999974
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-15 Score=136.50 Aligned_cols=149 Identities=22% Similarity=0.253 Sum_probs=89.3
Q ss_pred EEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 61 ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
++|++|||||||+|+|++.+. .+...+.+|.+....... ++. + ..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~-----------------~~~----~-----------~~~~ 47 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVE-----------------VPD----G-----------ARIQ 47 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEE-----------------cCC----C-----------CeEE
Confidence 589999999999999999875 233334444333221110 000 1 4589
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC------CChHHHHHHHHHhC----------CCCcE
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD------ISDEFRRSIEALRG----------HDDKI 204 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~------~~~~~~~~l~~l~~----------~~~~v 204 (551)
++||||+...... ...+.......+..+|++++|+|+.+.. .......+...+.. .++|+
T Consensus 48 i~DtpG~~~~~~~----~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 123 (176)
T cd01881 48 VADIPGLIEGASE----GRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPV 123 (176)
T ss_pred EEeccccchhhhc----CCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCe
Confidence 9999998642211 1112334455678899999999998631 11122223333321 36899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|+||+|+........... ..+ . .....+++.+||+++.|+
T Consensus 124 ivv~NK~Dl~~~~~~~~~~~-~~~--~---~~~~~~~~~~Sa~~~~gl 165 (176)
T cd01881 124 IYVLNKIDLDDAEELEEELV-REL--A---LEEGAEVVPISAKTEEGL 165 (176)
T ss_pred EEEEEchhcCchhHHHHHHH-HHH--h---cCCCCCEEEEehhhhcCH
Confidence 99999999987655433211 111 1 122346889999988887
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-14 Score=152.27 Aligned_cols=125 Identities=24% Similarity=0.222 Sum_probs=87.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|||||||+|+|++.+.+.+...|++|++....... +++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~----------------------~~g-------- 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFE----------------------LNG-------- 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEE----------------------ECC--------
Confidence 34579999999999999999999998876666667666554322111 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+... .++. . -......++..+|++++|+|+++ +.+..+. ++..+...++|+++|+||+|+
T Consensus 251 ---~~v~l~DTaG~~~~~~-~ie~-~-gi~~~~~~~~~aD~il~V~D~s~-~~s~~~~-~l~~~~~~~~piIlV~NK~Dl 322 (442)
T TIGR00450 251 ---ILIKLLDTAGIREHAD-FVER-L-GIEKSFKAIKQADLVIYVLDASQ-PLTKDDF-LIIDLNKSKKPFILVLNKIDL 322 (442)
T ss_pred ---EEEEEeeCCCcccchh-HHHH-H-HHHHHHHHHhhCCEEEEEEECCC-CCChhHH-HHHHHhhCCCCEEEEEECccC
Confidence 3478999999975321 1110 0 01234567789999999999986 5555444 566666568899999999999
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 323 ~~~ 325 (442)
T TIGR00450 323 KIN 325 (442)
T ss_pred CCc
Confidence 754
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=132.48 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=86.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+++|++..... ....||..... .+.+ + +
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~--~~~~~t~g~~~~~~~~------------------~-----~----------- 44 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS--QIIVPTVGFNVESFEK------------------G-----N----------- 44 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc--ceecCccccceEEEEE------------------C-----C-----------
Confidence 48999999999999999999875311 11122221100 0000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCCh-HHHHHHHHHh------CCCCcEEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD-EFRRSIEALR------GHDDKIRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~-~~~~~l~~l~------~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+++ ..+. ....++..+. ..+.|+++|+|
T Consensus 45 ~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~N 112 (162)
T cd04157 45 LSFTAFDMSGQGK-----------YRGLWEHYYKNIQGIIFVIDSSD-RLRLVVVKDELELLLNHPDIKHRRVPILFFAN 112 (162)
T ss_pred EEEEEEECCCCHh-----------hHHHHHHHHccCCEEEEEEeCCc-HHHHHHHHHHHHHHHcCcccccCCCCEEEEEe
Confidence 3488999999764 45556677899999999999985 2221 1122333221 24689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ +.... .+... .....+++.+||++|.|+
T Consensus 113 K~Dl~~~~~~~~-~~~~l-~~~~~-~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 113 KMDLPDALTAVK-ITQLL-GLENI-KDKPWHIFASNALTGEGL 152 (162)
T ss_pred CccccCCCCHHH-HHHHh-CCccc-cCceEEEEEeeCCCCCch
Confidence 999975322111 11111 11111 111235678999999988
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=132.85 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=89.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|||||||+|+|++.++.. ...+..+.+.......-+ +. ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~----------------~~---------------~~ 49 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLE----------------DK---------------TV 49 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEEC----------------CE---------------EE
Confidence 69999999999999999999988642 222322322222111000 00 02
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-CC--CCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-GH--DDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~~--~~~vilVlNK~Dl~ 214 (551)
.+.+|||||... +.......+..+|++++|+|+.+.........++..+. .. +.|+++|+||+|+.
T Consensus 50 ~l~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 50 RLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 488999999643 45566777899999999999985221222234444433 22 48999999999995
Q ss_pred CHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... .+....... ....+.+.+||.++.|+
T Consensus 119 ~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v 150 (161)
T cd01861 119 DKRQVSTEEGEKKAK-------ELNAMFIETSAKAGHNV 150 (161)
T ss_pred ccCccCHHHHHHHHH-------HhCCEEEEEeCCCCCCH
Confidence 43221 111111111 11246788999999987
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=130.94 Aligned_cols=146 Identities=17% Similarity=0.193 Sum_probs=91.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|+|||||+|+|++...... ..+|.........-. ++ +. .
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~---~~~t~~~~~~~~~~~----~~----------~~---------------~ 48 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN---YKSTIGVDFKSKTIE----ID----------GK---------------T 48 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc---cCCceeeeeEEEEEE----EC----------CE---------------E
Confidence 3699999999999999999999885322 222222111100000 00 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVlNK~Dl 213 (551)
..+.++||||... +......+++++|++++|+|+.+.........++..+... +.|+++|+||+|+
T Consensus 49 ~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 117 (159)
T cd00154 49 VKLQIWDTAGQER-----------FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred EEEEEEecCChHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence 3488999999753 5556777889999999999998522222224455555443 5899999999999
Q ss_pred CCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..+.. ..+....... ....+++.+||.++.++
T Consensus 118 ~~~~~~~~~~~~~~~~-------~~~~~~~~~sa~~~~~i 150 (159)
T cd00154 118 EDQRQVSTEEAQQFAK-------ENGLLFFETSAKTGENV 150 (159)
T ss_pred cccccccHHHHHHHHH-------HcCCeEEEEecCCCCCH
Confidence 72222 1222222221 12347899999998887
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=133.76 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=89.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+++|....+. . ..||... ...+... .
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~--~~~t~g~~~~~~~~~-----------------------~-------- 52 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--T--TIPTVGFNVETVTYK-----------------------N-------- 52 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--c--ccCCcccceEEEEEC-----------------------C--------
Confidence 3578999999999999999999876642 1 1223211 1111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH-HHHhC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI-EALRG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l-~~l~~---~~~~vilVlN 209 (551)
..+.++||||... +......++.++|++++|+|+.+.........++ +.+.. .+.|+++|+|
T Consensus 53 ---~~~~l~Dt~G~~~-----------~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 53 ---VKFNVWDVGGQDK-----------IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 3489999999864 4445566789999999999998622122222333 33332 3589999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ .... ..+...... ..+.+.+||++|.|+
T Consensus 119 K~Dl~~~~~~~~-i~~~-~~~~~~~~~-~~~~~~~SAk~g~gv 158 (168)
T cd04149 119 KQDLPDAMKPHE-IQEK-LGLTRIRDR-NWYVQPSCATSGDGL 158 (168)
T ss_pred CcCCccCCCHHH-HHHH-cCCCccCCC-cEEEEEeeCCCCCCh
Confidence 999864211111 1111 112221122 235778999999998
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=133.55 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=89.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-E--EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|.+|+|||||+|++++..+. ....||... + ..+... +.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~---~~~~~t~~~~~~~~~~~~~-----------------~~------------ 50 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN---PSFISTIGIDFKIRTIELD-----------------GK------------ 50 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC---cccccCccceEEEEEEEEC-----------------CE------------
Confidence 478999999999999999999998752 222222211 1 111110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlN 209 (551)
...+.++||||... +......++.++|++++|+|+.+........+++..+.+ .+.|+++|.|
T Consensus 51 ---~~~l~l~D~~g~~~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n 116 (167)
T cd01867 51 ---KIKLQIWDTAGQER-----------FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGN 116 (167)
T ss_pred ---EEEEEEEeCCchHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 02488999999653 444556778999999999999852222222344444443 3679999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..... +......... ..+.+.+||.+|.++
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 153 (167)
T cd01867 117 KCDMEEKRVVSKEEGEALADEY-------GIKFLETSAKANINV 153 (167)
T ss_pred CcccccccCCCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 99997532211 1111111111 235789999999888
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=132.24 Aligned_cols=143 Identities=24% Similarity=0.167 Sum_probs=87.9
Q ss_pred EEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 61 ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
|+|.+|+|||||+|+|++... .....+++|.+....... ++. ..+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~------------------------------~~~---~~~~ 46 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFK------------------------------LGG---KEIE 46 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEe------------------------------eCC---eEEE
Confidence 589999999999999999863 223333334333211100 000 3489
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHH
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQ 218 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~ 218 (551)
+|||||+.+...... -......++ +++|++++|+|+... .....+...+...++|+++|+||+|+.+...
T Consensus 47 liDtpG~~~~~~~~~-----~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~ 118 (158)
T cd01879 47 IVDLPGTYSLSPYSE-----DEKVARDFLLGEKPDLIVNVVDATNL---ERNLYLTLQLLELGLPVVVALNMIDEAEKRG 118 (158)
T ss_pred EEECCCccccCCCCh-----hHHHHHHHhcCCCCcEEEEEeeCCcc---hhHHHHHHHHHHcCCCEEEEEehhhhccccc
Confidence 999999975322110 012233344 599999999999852 2233455556667899999999999976543
Q ss_pred HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 219 LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...........+ ..+++.+||.++.++
T Consensus 119 ~~~~~~~~~~~~-------~~~~~~iSa~~~~~~ 145 (158)
T cd01879 119 IKIDLDKLSELL-------GVPVVPTSARKGEGI 145 (158)
T ss_pred chhhHHHHHHhh-------CCCeEEEEccCCCCH
Confidence 222222111111 236789999998887
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-15 Score=140.73 Aligned_cols=127 Identities=17% Similarity=0.274 Sum_probs=84.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCC-CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~-~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|++|+|||||+|+|+|++.+...... +.|++....- ..+.+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~----------------------~~~~~----------- 48 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES----------------------AVWDG----------- 48 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee----------------------EEECC-----------
Confidence 6999999999999999999999865433322 2333322110 00111
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vilVlNK~ 211 (551)
+.+.+|||||+.+.....-....++.+.+.....++|++|+|+|+.+ ++..+...++.+++. ..++++|+|++
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 56999999999875321111111233333344578999999999985 788888888887653 26799999999
Q ss_pred CCCCHHHH
Q psy11743 212 DMVDHQQL 219 (551)
Q Consensus 212 Dl~~~~~~ 219 (551)
|.+....+
T Consensus 127 d~l~~~~~ 134 (196)
T cd01852 127 DDLEGGTL 134 (196)
T ss_pred cccCCCcH
Confidence 98865433
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=130.39 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=88.5
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
|+++|++|+|||||+|+|.+.++. ....||.... ..+.. |. .
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~------------------~~----------------~ 44 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS---EDTIPTVGFNMRKVTK------------------GN----------------V 44 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC---cCccCCCCcceEEEEE------------------CC----------------E
Confidence 799999999999999999998752 1112222111 11111 11 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKADM 213 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~Dl 213 (551)
.+.++||||... +......++..+|++++|+|+............+..+. ..++|+++|+||+|+
T Consensus 45 ~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 113 (159)
T cd04159 45 TLKVWDLGGQPR-----------FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDL 113 (159)
T ss_pred EEEEEECCCCHh-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 488999999753 55566778899999999999985221122222232222 246899999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.......+... .+ .+... .....+.+.+|+++|.|+
T Consensus 114 ~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 114 PGALSVDELIE-QM-NLKSI-TDREVSCYSISCKEKTNI 149 (159)
T ss_pred cCCcCHHHHHH-Hh-Ccccc-cCCceEEEEEEeccCCCh
Confidence 76433222111 11 11111 122356789999999887
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=137.80 Aligned_cols=151 Identities=21% Similarity=0.267 Sum_probs=89.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+|+|.+|||||||+|++++.++.. ...||+. .+. .+..+. .
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~---~~~pt~~~~~~~~~i~~~~-----------------~-------------- 47 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE---EYIPTEHRRLYRPAVVLSG-----------------R-------------- 47 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc---ccCCccccccceeEEEECC-----------------E--------------
Confidence 69999999999999999999987632 2334432 111 111110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh------CCCCcEEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR------GHDDKIRIVL 208 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~------~~~~~vilVl 208 (551)
...+.+|||||...... ..+.++......++..+|++++|+|+.+.........+.+.+. ..+.|+++|+
T Consensus 48 -~~~l~i~Dt~G~~~~~~---~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 48 -VYDLHILDVPNMQRYPG---TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred -EEEEEEEeCCCcccCCc---cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 02478999999864211 1112233334456789999999999986221222233444332 2468999999
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+...+.... ....... .....+.+.+||++|.|+
T Consensus 124 NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~e~Sak~g~~v 162 (198)
T cd04142 124 NKRDQQRHRFAPRHVLSVLVR------KSWKCGYLECSAKYNWHI 162 (198)
T ss_pred ECccccccccccHHHHHHHHH------HhcCCcEEEecCCCCCCH
Confidence 9999965322111 1111110 011346788999999988
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=135.98 Aligned_cols=143 Identities=21% Similarity=0.262 Sum_probs=87.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|||||||+|+|++..+.. ...+|. +.+. .+... |..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~---~~~~t~~~~~~~~~~~~-----------------~~~-------------- 46 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE---TYDPTIEDSYRKQVVVD-----------------GQP-------------- 46 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc---cCCCchHhhEEEEEEEC-----------------CEE--------------
Confidence 48999999999999999999876521 122332 1111 11110 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCcEEEEEc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDKIRIVLN 209 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|..+.........++..+.. .+.|+++|+|
T Consensus 47 -~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgN 114 (190)
T cd04144 47 -CMLEVLDTAGQEE-----------YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN 114 (190)
T ss_pred -EEEEEEECCCchh-----------hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEE
Confidence 2378999999753 455566678999999999999852222223445444432 3579999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...+.......+. . .. ..+.+.+||++|.|+
T Consensus 115 K~Dl~~~~~v~~~~~~~~~-~----~~-~~~~~e~SAk~~~~v 151 (190)
T cd04144 115 KCDKVYEREVSTEEGAALA-R----RL-GCEFIEASAKTNVNV 151 (190)
T ss_pred ChhccccCccCHHHHHHHH-H----Hh-CCEEEEecCCCCCCH
Confidence 9999643222111111111 0 01 135688999999988
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-15 Score=150.49 Aligned_cols=127 Identities=23% Similarity=0.270 Sum_probs=95.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..+.|+|+|+||||||||+|+|+.++..+|..-|++|+|.+.+... +.|
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~------~~G------------------------ 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT------VNG------------------------ 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee------cCC------------------------
Confidence 45689999999999999999999999999999999999998765332 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------------CC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------------HD 201 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------------~~ 201 (551)
..+.++||+|+.....+.++. . -....+..+.+||++++|+|+.. ..+.++..+.+.+.. ..
T Consensus 316 ---~~v~L~DTAGiRe~~~~~iE~-~-gI~rA~k~~~~advi~~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~ 389 (531)
T KOG1191|consen 316 ---VPVRLSDTAGIREESNDGIEA-L-GIERARKRIERADVILLVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEK 389 (531)
T ss_pred ---eEEEEEeccccccccCChhHH-H-hHHHHHHHHhhcCEEEEEecccc-cccccchHHHHHHHHhccceEEEeccccc
Confidence 459999999998722222221 1 13355677899999999999964 455566565555542 23
Q ss_pred CcEEEEEcCCCCCCH
Q psy11743 202 DKIRIVLNKADMVDH 216 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~ 216 (551)
.++++|.||.|+..+
T Consensus 390 ~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 390 QRIILVANKSDLVSK 404 (531)
T ss_pred cceEEEechhhccCc
Confidence 688999999999875
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=134.89 Aligned_cols=151 Identities=14% Similarity=0.162 Sum_probs=88.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|||||||++++++..+. .. .||... ...+... ..+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~--~~t~~~~~~~~~~~-----------------------------~~~~ 49 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NT--VPTKGFNTEKIKVS-----------------------------LGNS 49 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--Cc--CCccccceeEEEee-----------------------------ccCC
Confidence 468999999999999999999987753 11 233211 1110000 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHH----HHhCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE----ALRGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~----~l~~~~~~vilVlNK 210 (551)
.-..+.++||||... +......++..+|++++|+|+.+.........++. .....++|+++|+||
T Consensus 50 ~~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK 118 (183)
T cd04152 50 KGITFHFWDVGGQEK-----------LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANK 118 (183)
T ss_pred CceEEEEEECCCcHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence 003489999999753 44455667889999999999985211111122222 223357899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ .. .+..+.........+++.+||++|.|+
T Consensus 119 ~D~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 119 QDLPNALSVSE-VE-KLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred cCccccCCHHH-HH-HHhCccccCCCCceEEEEeecccCCCH
Confidence 99864211111 11 111111111122346788999999998
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=130.72 Aligned_cols=145 Identities=15% Similarity=0.175 Sum_probs=88.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|++|+|||||+|+|++..+.. ...|.++.+.. ..+..+. .
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~--------------- 47 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDG-----------------K--------------- 47 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECC-----------------E---------------
Confidence 379999999999999999999887532 12222222211 1111110 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.++||||... +.......++.+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 48 ~~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~ 116 (161)
T cd01863 48 KVKLAIWDTAGQER-----------FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKI 116 (161)
T ss_pred EEEEEEEECCCchh-----------hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 03488999999653 44455667789999999999985221122233443333 3468899999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+........ ...+.+.+||++|.|+
T Consensus 117 D~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 150 (161)
T cd01863 117 DKENREVTREEGLKFARK-------HNMLFIETSAKTRDGV 150 (161)
T ss_pred cccccccCHHHHHHHHHH-------cCCEEEEEecCCCCCH
Confidence 997332111111111111 1346889999999988
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=132.11 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=88.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||+++++...+. . ...||+.. +. .+..+ +..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~-~~~~t~~~~~~~~~~~~-----------------~~~------------- 48 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--E-KYDPTIEDSYRKQVEVD-----------------GQQ------------- 48 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--c-ccCCcchheEEEEEEEC-----------------CEE-------------
Confidence 57999999999999999999976542 1 12233321 11 00000 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|..+........++...+. ..+.|+++|+||
T Consensus 49 --~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (164)
T cd04175 49 --CMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 115 (164)
T ss_pred --EEEEEEECCCccc-----------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 2377999999754 45556667899999999999875221122233444433 246899999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+........ ........+ ..+.+.+||++|.|+
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 151 (164)
T cd04175 116 CDLEDERVVGKEQGQNLARQW-------GCAFLETSAKAKINV 151 (164)
T ss_pred CcchhccEEcHHHHHHHHHHh-------CCEEEEeeCCCCCCH
Confidence 99975321111 111111111 136789999999988
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=132.93 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=89.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|||||||+|+|++.++.. ...|..+++.... +..+ +..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~-----------------~~~------------- 51 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQID-----------------GKT------------- 51 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEEC-----------------CEE-------------
Confidence 3689999999999999999999887532 1222222111111 1110 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..++++++|+|+++.........++..+.+ .+.|+++|+||+
T Consensus 52 --~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~ 118 (165)
T cd01868 52 --IKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKS 118 (165)
T ss_pred --EEEEEEeCCChHH-----------HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 2478999999753 455566778899999999999852222222344444432 358999999999
Q ss_pred CCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+...... .+........ ...+.+.+||++|.|+
T Consensus 119 Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v 153 (165)
T cd01868 119 DLRHLRAVPTEEAKAFAEK-------NGLSFIETSALDGTNV 153 (165)
T ss_pred cccccccCCHHHHHHHHHH-------cCCEEEEEECCCCCCH
Confidence 98753221 1111111111 1236788999999887
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=134.40 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=90.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-.+|+++|.+|||||||+|++++..+..... + +.+..+. ..... .+..
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~-t~~~~~~~~~~~~----------------~~~~------------- 52 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-L-TIGVEFGARMITI----------------DGKQ------------- 52 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-C-ccceeEEEEEEEE----------------CCEE-------------
Confidence 3689999999999999999999887532211 1 1111111 10000 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
..+.++||||... +......+++.+|++++|+|+++.........++..+++ .+.|+++|+||+
T Consensus 53 --~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~ 119 (168)
T cd01866 53 --IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKC 119 (168)
T ss_pred --EEEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 2488999999643 555667788999999999999852222223445554443 368899999999
Q ss_pred CCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+........ ........ ...+.+.+||+++.++
T Consensus 120 Dl~~~~~~~~~~~~~~~~~-------~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 120 DLESRREVSYEEGEAFAKE-------HGLIFMETSAKTASNV 154 (168)
T ss_pred ccccccCCCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 9974322111 11111111 1235788999999988
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=130.72 Aligned_cols=132 Identities=21% Similarity=0.167 Sum_probs=81.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|||||||+|+|++.... ..+|. .+. | .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-----~~~t~----~~~------------------~------------------~ 36 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-----YKKTQ----AVE------------------Y------------------N 36 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-----cccce----eEE------------------E------------------c
Confidence 6999999999999999999987641 11111 000 0 0
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
-.+|||||..... ..+.+.+...++++|++++|+|+.+ +.+.....+...+ ..|+++|+||+|+.+..
T Consensus 37 -~~~iDt~G~~~~~-------~~~~~~~~~~~~~ad~vilv~d~~~-~~s~~~~~~~~~~---~~p~ilv~NK~Dl~~~~ 104 (142)
T TIGR02528 37 -DGAIDTPGEYVEN-------RRLYSALIVTAADADVIALVQSATD-PESRFPPGFASIF---VKPVIGLVTKIDLAEAD 104 (142)
T ss_pred -CeeecCchhhhhh-------HHHHHHHHHHhhcCCEEEEEecCCC-CCcCCChhHHHhc---cCCeEEEEEeeccCCcc
Confidence 2579999974210 1123333445799999999999986 3333333444332 35999999999997532
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...+......... ...+++.+||++|.|+
T Consensus 105 ~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 105 VDIERAKELLETA------GAEPIFEISSVDEQGL 133 (142)
T ss_pred cCHHHHHHHHHHc------CCCcEEEEecCCCCCH
Confidence 1111111111111 1235788999999887
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=131.75 Aligned_cols=143 Identities=18% Similarity=0.257 Sum_probs=89.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE--EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|++|+|||||+|+|++..+. ....+|... +. .+..+ +..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~-----------------~~~------------ 48 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS---EQYKSTIGVDFKTKTIEVD-----------------GKR------------ 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEEEEEC-----------------CEE------------
Confidence 37999999999999999999988752 222222221 11 11110 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++.........++..+.. .+.|+++|+||
T Consensus 49 ---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK 114 (164)
T smart00175 49 ---VKLQIWDTAGQER-----------FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNK 114 (164)
T ss_pred ---EEEEEEECCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 2478999999643 455667788999999999999862222222344444432 46899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+....+.. +......... ..+++.+||.++.|+
T Consensus 115 ~D~~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~i 150 (164)
T smart00175 115 SDLEDQRQVSREEAEAFAEEH-------GLPFFETSAKTNTNV 150 (164)
T ss_pred hhcccccCCCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 9987532211 1111111111 235788999998887
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=130.66 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=87.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|+|||||+++|....+. . ..||... ...+.+ . .
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~--~~~t~~~~~~~~~~------------------~-----~----------- 42 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--T--TIPTIGFNVETVTY------------------K-----N----------- 42 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--C--cCCccCcCeEEEEE------------------C-----C-----------
Confidence 4899999999999999999876642 1 1222111 111100 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhC---CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRG---HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~---~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+.+... ......+...+.. .++|+++|+||+|
T Consensus 43 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd04151 43 LKFQVWDLGGQTS-----------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQD 111 (158)
T ss_pred EEEEEEECCCCHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCC
Confidence 3589999999864 45556677899999999999985211 1112233333332 3689999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+ ....+ ..... .....+++++||++|.|+
T Consensus 112 l~~~~~~~~-i~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 112 MPGALSEAE-ISEKL-GLSEL-KDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCCCCCHHH-HHHHh-Ccccc-CCCcEEEEEeeccCCCCH
Confidence 975321111 11111 11111 112246899999999998
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=151.46 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=103.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|++++|||||+|+|++..-.. .+.. ......+....+..-.|...+. . ......+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~--~~~~---~~~~~~~d~~~~e~~rg~T~~~----------~--~~~~~~~ 73 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAK--GGAK---AKKYDEIDSAPEEKARGITINT----------A--HVEYETE 73 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCcc--cccc---ccccccccCChhhhcCCEeEEc----------c--EEEEccC
Confidence 34689999999999999999999863210 0000 0000000000000001111100 0 0000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl 213 (551)
-.++.+|||||+.+ |...+...+..+|++++|+|+.. +...++.+.+..+...++| +++|+||+|+
T Consensus 74 -~~~~~~iDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 74 -NRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred -CeEEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 04689999999753 67777888899999999999996 7888888999888888888 7789999999
Q ss_pred CCHHHHHHHHH----HHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 214 VDHQQLMRVYG----ALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 214 ~~~~~~~~~~~----~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
.+.++..+... ..+...+. .....|++++||++|.++.
T Consensus 141 ~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~ii~~Sa~~g~n~~ 182 (409)
T CHL00071 141 VDDEELLELVELEVRELLSKYDF--PGDDIPIVSGSALLALEAL 182 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCC--CCCcceEEEcchhhccccc
Confidence 97554433322 22222222 1123689999999988663
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=130.89 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=87.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|++..+. . ...+++ +........ .+ .
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~------~~----------~--------------- 46 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--E-DYEPTKADSYRKKVVL------DG----------E--------------- 46 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--c-ccCCcchhhEEEEEEE------CC----------E---------------
Confidence 37999999999999999999987752 1 222222 211111000 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|.+++|+|............+...+. ..+.|+++|+||+
T Consensus 47 ~~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 115 (164)
T cd04139 47 DVQLNILDTAGQED-----------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKC 115 (164)
T ss_pred EEEEEEEECCChhh-----------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence 03488999999754 44556678899999999999875221111223333222 2579999999999
Q ss_pred CCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+..... ...........+ ..+++.+||+++.|+
T Consensus 116 D~~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 150 (164)
T cd04139 116 DLEDKRQVSSEEAANLARQW-------GVPYVETSAKTRQNV 150 (164)
T ss_pred ccccccccCHHHHHHHHHHh-------CCeEEEeeCCCCCCH
Confidence 9976211 111111111111 236789999999998
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=132.08 Aligned_cols=143 Identities=15% Similarity=0.228 Sum_probs=88.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+++|.+|||||||+|+|++..+.. ...||...-. .+... +.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~~-------------- 47 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS---KYLPTIGIDYGVKKVSVR-----------------NK-------------- 47 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CCCCccceeEEEEEEEEC-----------------Ce--------------
Confidence 69999999999999999999988632 2222321110 11100 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--------CCCcEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--------HDDKIRI 206 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--------~~~~vil 206 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+.+ .+.|+++
T Consensus 48 -~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piil 115 (168)
T cd04119 48 -EVRVNFFDLSGHPE-----------YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVV 115 (168)
T ss_pred -EEEEEEEECCccHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEE
Confidence 03488999999853 445566678999999999999862222222344443332 3578999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+.+....... ....+.... ..+.+.+||++|.|+
T Consensus 116 v~nK~Dl~~~~~~~~~-~~~~~~~~~-----~~~~~~~Sa~~~~gi 155 (168)
T cd04119 116 CANKIDLTKHRAVSED-EGRLWAESK-----GFKYFETSACTGEGV 155 (168)
T ss_pred EEEchhcccccccCHH-HHHHHHHHc-----CCeEEEEECCCCCCH
Confidence 9999999732211110 011111111 135788999999988
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=131.18 Aligned_cols=133 Identities=24% Similarity=0.264 Sum_probs=83.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|+|||||+|+|.|.... . .+| - .+.+.. .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~-~---~v~~~~----------------------------------~ 39 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKT-Q---AVEFND----------------------------------K 39 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccc-e---EEEECC----------------------------------C
Confidence 6999999999999999999886521 0 011 0 111100 1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.+|||||...... ++...+...+.++|++++|+|+.. +.+.....+.. + ..++|+++|+||+|+.+.+
T Consensus 40 --~~iDtpG~~~~~~-------~~~~~~~~~~~~ad~il~v~d~~~-~~s~~~~~~~~-~-~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 40 --GDIDTPGEYFSHP-------RWYHALITTLQDVDMLIYVHGAND-PESRLPAGLLD-I-GVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred --CcccCCccccCCH-------HHHHHHHHHHhcCCEEEEEEeCCC-cccccCHHHHh-c-cCCCCeEEEEEccccCccc
Confidence 2699999864321 134444556789999999999985 32222222222 1 2367899999999986532
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.. ........++. ..|++++||++|.|+
T Consensus 108 -~~-~~~~~~~~~~~-----~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 108 -VA-ATRKLLLETGF-----EEPIFELNSHDPQSV 135 (158)
T ss_pred -HH-HHHHHHHHcCC-----CCCEEEEECCCccCH
Confidence 11 12222322322 258899999999988
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=160.69 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|++|+|||||+|+|+|.+. .+...|++|.++........ +
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~----------------------~--------- 49 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTT----------------------D--------- 49 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcC----------------------c---------
Confidence 356899999999999999999999874 35556777776654422111 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccch-HHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDF-TGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~-~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+.+-... ...... ......++ ..+|++++|+|+++. +....+...+.+.++|+++|+||+
T Consensus 50 --~~i~lvDtPG~ysl~~~--~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l---er~l~l~~ql~e~giPvIvVlNK~ 122 (772)
T PRK09554 50 --HQVTLVDLPGTYSLTTI--SSQTSLDEQIACHYILSGDADLLINVVDASNL---ERNLYLTLQLLELGIPCIVALNML 122 (772)
T ss_pred --eEEEEEECCCccccccc--cccccHHHHHHHHHHhccCCCEEEEEecCCcc---hhhHHHHHHHHHcCCCEEEEEEch
Confidence 45899999999763211 000011 11223332 589999999999852 233445566777899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..............++ .|++.+|+.++.|+
T Consensus 123 Dl~~~~~i~id~~~L~~~LG-------~pVvpiSA~~g~GI 156 (772)
T PRK09554 123 DIAEKQNIRIDIDALSARLG-------CPVIPLVSTRGRGI 156 (772)
T ss_pred hhhhccCcHHHHHHHHHHhC-------CCEEEEEeecCCCH
Confidence 98754332222222222222 36889999999886
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=132.16 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=87.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|..|||||||+|+|++..+.. ..+ ++....+. .... +. .
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~-~~~~~~~~~~~~~-----------------~~----~----------- 46 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVP-RVLPEITIPADVT-----------------PE----R----------- 46 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCC-CcccceEeeeeec-----------------CC----e-----------
Confidence 69999999999999999999987632 111 11111111 0000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHh--CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALR--GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~--~~~~~vilVlNK~D 212 (551)
..+.+|||||... +...+..++..+|++++|+|+.+ +.+... ..++..++ ..+.|+++|+||+|
T Consensus 47 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~D 114 (166)
T cd01893 47 VPTTIVDTSSRPQ-----------DRANLAAEIRKANVICLVYSVDR-PSTLERIRTKWLPLIRRLGVKVPIILVGNKSD 114 (166)
T ss_pred EEEEEEeCCCchh-----------hhHHHhhhcccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 3488999999764 23344556789999999999985 222222 23444444 23689999999999
Q ss_pred CCCHHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.... .+........... ..+.+.+||+++.|+
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v 152 (166)
T cd01893 115 LRDGSSQAGLEEEMLPIMNEFRE-----IETCVECSAKTLINV 152 (166)
T ss_pred cccccchhHHHHHHHHHHHHHhc-----ccEEEEeccccccCH
Confidence 9764321 1111111111111 126788999999887
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-14 Score=129.75 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=87.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||++++....+. . ..||... ...+.+. .
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~--~~pt~g~~~~~~~~~-----------------------~----------- 43 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEYK-----------------------N----------- 43 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--c--cCCCCCcceEEEEEC-----------------------C-----------
Confidence 6999999999999999999766542 1 2333221 1111110 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHH-HHhC---CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE-ALRG---HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~-~l~~---~~~~vilVlNK~D 212 (551)
..+.++||||... +......++.++|++++|+|+++........+++. .+.. ...|+++|+||+|
T Consensus 44 ~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 112 (159)
T cd04150 44 ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQD 112 (159)
T ss_pred EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCC
Confidence 3489999999854 45556677899999999999985221222223232 2222 2589999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.....+.. .. +.+... ......++.+||++|.|+
T Consensus 113 l~~~~~~~~i~-~~-~~~~~~-~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 113 LPNAMSAAEVT-DK-LGLHSL-RNRNWYIQATCATSGDGL 149 (159)
T ss_pred CCCCCCHHHHH-HH-hCcccc-CCCCEEEEEeeCCCCCCH
Confidence 96431111111 11 122221 112235567999999998
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-14 Score=133.80 Aligned_cols=143 Identities=19% Similarity=0.197 Sum_probs=90.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|.+..+... .||......... ++ +
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~-----------------~~-----~--------- 60 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELA-----------------IG-----N--------- 60 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEE-----------------EC-----C---------
Confidence 458899999999999999999999765322 233222111000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++..........+..+ . ..+.|+++|+||
T Consensus 61 --~~~~~~D~~G~~~-----------~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK 127 (184)
T smart00178 61 --IKFTTFDLGGHQQ-----------ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNK 127 (184)
T ss_pred --EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 3488999999854 3445567789999999999998522112222233222 2 247899999999
Q ss_pred CCCCC---HHHHHHHHHHHHHHccccc--------CCCCceEEEecccCCCCC
Q psy11743 211 ADMVD---HQQLMRVYGALMWSLGKVL--------QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~---~~~~~~~~~~~~~~l~~l~--------~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.. .+++.+ .++... +.....++.+||++|.|+
T Consensus 128 ~Dl~~~~~~~~i~~-------~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 128 IDAPYAASEDELRY-------ALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred ccccCCCCHHHHHH-------HcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 99853 232221 122210 123446889999999987
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=131.77 Aligned_cols=145 Identities=15% Similarity=0.220 Sum_probs=88.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||++++++..+.. ...+|...+ ..... +++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~------------------------------~~~~- 47 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE---KYDPTIEDFYRKEIE------------------------------VDSS- 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCchhheEEEEEE------------------------------ECCE-
Confidence 579999999999999999999877532 222332211 11000 0000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~ 211 (551)
...+.++||||... +......++.++|++++|+|..+.........+...+.+ .+.|+++|+||+
T Consensus 48 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 48 PSVLEILDTAGTEQ-----------FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEEEECCCccc-----------ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 02378999999754 344555677899999999999852221222344444432 478999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...........+ .. . ...+.+.+||++|.++
T Consensus 117 Dl~~~~~~~~~~~~~~---~~--~-~~~~~~~~Sa~~~~~v 151 (163)
T cd04176 117 DLESEREVSSAEGRAL---AE--E-WGCPFMETSAKSKTMV 151 (163)
T ss_pred cchhcCccCHHHHHHH---HH--H-hCCEEEEecCCCCCCH
Confidence 9864322111111111 11 1 1236788999999887
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=130.91 Aligned_cols=143 Identities=18% Similarity=0.239 Sum_probs=89.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-E-E-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F-I-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~-~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|++|+|||||+|+|++.++.. ...+|... + + .+..+. .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~v~~~~---------------~~-------------- 49 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE---NQESTIGAAFLTQTVNLDD---------------TT-------------- 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCccceeEEEEEEEECC---------------EE--------------
Confidence 579999999999999999999988632 11222211 1 1 111110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+.. ...|+++|+||
T Consensus 50 ---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK 115 (163)
T cd01860 50 ---VKFEIWDTAGQER-----------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNK 115 (163)
T ss_pred ---EEEEEEeCCchHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 3488999999643 444555677899999999999853323333455555443 35789999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .+.........+ .+.+.+||++|.|+
T Consensus 116 ~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v 151 (163)
T cd01860 116 ADLESKRQVSTEEAQEYADENG-------LLFFETSAKTGENV 151 (163)
T ss_pred ccccccCcCCHHHHHHHHHHcC-------CEEEEEECCCCCCH
Confidence 998742211 111112222111 46788999999988
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=125.55 Aligned_cols=152 Identities=22% Similarity=0.308 Sum_probs=96.4
Q ss_pred EEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 61 ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
++|.+|+|||||+|+|++.........+..|......... ++. ...+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~---------------~~~~~ 48 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWE-----------------LGP---------------LGPVV 48 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEE-----------------ecC---------------CCcEE
Confidence 5899999999999999998754222222222222111100 000 14699
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHH
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLM 220 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~ 220 (551)
++||||+....... .........++..+|++++|+|+.. ........+.......+.|+++|+||+|+.......
T Consensus 49 ~~Dt~g~~~~~~~~----~~~~~~~~~~~~~~d~il~v~~~~~-~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~ 123 (163)
T cd00880 49 LIDTPGIDEAGGLG----REREELARRVLERADLILFVVDADL-RADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEE 123 (163)
T ss_pred EEECCCCCccccch----hhHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHH
Confidence 99999998743221 0112455667899999999999996 455554444556666789999999999999865543
Q ss_pred HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 221 RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... ..... ...+..+++.+||..+.++
T Consensus 124 ~~~~~-~~~~~--~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 124 ELLEL-RLLIL--LLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred HHHHH-HHhhc--ccccCCceEEEeeeccCCH
Confidence 32110 00011 1344567889999988876
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=132.21 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=89.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+++|++..+. ...+.+....+...... .+.. .
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~----------------~~~~--------------~ 50 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIE----------------VNGQ--------------K 50 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEE----------------ECCE--------------E
Confidence 57999999999999999999988752 22221111222110000 0000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++++|+|+++.........++..+. ..+.|+++|.||+|+
T Consensus 51 ~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 51 IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 2478999999753 45556677899999999999986222222234444333 245789999999999
Q ss_pred CCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....... +........ ...+.+.+||++|.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~-------~~~~~~e~Sa~~~~~i 152 (166)
T cd04122 120 EAQRDVTYEEAKQFADE-------NGLLFLECSAKTGENV 152 (166)
T ss_pred ccccCcCHHHHHHHHHH-------cCCEEEEEECCCCCCH
Confidence 7543221 111111111 1236788999999998
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=130.97 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=86.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||+|+|++..+... ..+....+... .+.. ++ . .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~-------~~----------~-------------~- 48 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVTV-------DD----------K-------------L- 48 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCccceEEEEEEEEE-------CC----------E-------------E-
Confidence 3799999999999999999999875311 11111111110 0000 00 0 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----h---CCCCcEEEEE
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----R---GHDDKIRIVL 208 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~---~~~~~vilVl 208 (551)
..+.++||||... +......+++++|++|+|+|+.+.........+...+ . ..+.|+++|+
T Consensus 49 -~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (172)
T cd01862 49 -VTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG 116 (172)
T ss_pred -EEEEEEeCCChHH-----------HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence 2378999999753 4555667789999999999998521111112222222 1 1268999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+..+... .+......... ...+++.+||.+|.|+
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 117 NKIDLEEKRQVSTKKAQQWCQSN------GNIPYFETSAKEAINV 155 (172)
T ss_pred ECcccccccccCHHHHHHHHHHc------CCceEEEEECCCCCCH
Confidence 99999842211 11122222111 1246788999999988
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=135.46 Aligned_cols=143 Identities=22% Similarity=0.221 Sum_probs=88.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+++|.+|||||||+++|++.++.. ....+|+. .+. .+..+. .
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~------------------~------------- 48 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN--GNFIATVGIDFRNKVVTVDG------------------V------------- 48 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--cCcCCcccceeEEEEEEECC------------------E-------------
Confidence 69999999999999999999887521 11122221 111 111100 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
...+.||||||... +......++..+|++++|+|+.+.........++..+.+ .+.|+++|+||+
T Consensus 49 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 49 -KVKLQIWDTAGQER-----------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred -EEEEEEEeCCCcHH-----------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 02488999999643 455556678899999999999852222222344444442 367999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....... .......... ..+.+.+||++|.|+
T Consensus 117 Dl~~~~~~~~~~~~~l~~~~-------~~~~~e~Sa~~~~~v 151 (191)
T cd04112 117 DMSGERVVKREDGERLAKEY-------GVPFMETSAKTGLNV 151 (191)
T ss_pred cchhccccCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 996432211 1111111111 236788999999887
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=129.72 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=89.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|+|++..+.. ...+..+.+.... +..+ +. .
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~---------------~ 48 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVG-----------------GK---------------R 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEEC-----------------CE---------------E
Confidence 69999999999999999999887531 1111111111111 0000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+|+
T Consensus 49 ~~l~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 117 (161)
T cd04113 49 VKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDL 117 (161)
T ss_pred EEEEEEECcchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 3488999999753 45556677899999999999986222222234444333 357899999999999
Q ss_pred CCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....... +......... ..+.+.+||+++.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 150 (161)
T cd04113 118 ADQREVTFLEASRFAQEN-------GLLFLETSALTGENV 150 (161)
T ss_pred chhccCCHHHHHHHHHHc-------CCEEEEEECCCCCCH
Confidence 7533211 1111111111 146889999999988
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-14 Score=134.77 Aligned_cols=144 Identities=20% Similarity=0.283 Sum_probs=91.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.|+++|..|||||||+++++...+. ....+|.. .+. .+..+ |.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~---~~~~~Ti~~~~~~~~i~~~-----------------~~-------------- 47 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC---EACKSGVGVDFKIKTVELR-----------------GK-------------- 47 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC---CcCCCcceeEEEEEEEEEC-----------------CE--------------
Confidence 5899999999999999999987752 12222321 111 11110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
...+.+|||+|... +......++.++|++++|+|.++.........++..+.. .+.|+++|.||+
T Consensus 48 -~v~l~iwDtaGqe~-----------~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 48 -KIRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred -EEEEEEEeCCCchh-----------hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 03488999999864 566677788999999999999863322233445554442 368999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....++.......+.. .......+.+||++|.|+
T Consensus 116 DL~~~~~v~~~~~~~~a~-----~~~~~~~~etSAktg~gV 151 (202)
T cd04120 116 DCETDREISRQQGEKFAQ-----QITGMRFCEASAKDNFNV 151 (202)
T ss_pred ccccccccCHHHHHHHHH-----hcCCCEEEEecCCCCCCH
Confidence 997543322211111111 011235678999999998
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=135.05 Aligned_cols=145 Identities=16% Similarity=0.198 Sum_probs=89.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-E--EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||+++|++..+. ....||... + ..+.... +.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~---~~~~~t~~~d~~~~~v~~~~----------------~~------------- 48 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS---QHYKATIGVDFALKVIEWDP----------------NT------------- 48 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeEEEEEEEEEECC----------------CC-------------
Confidence 37999999999999999999987652 222333221 1 1111110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-------CCCCcEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-------GHDDKIRI 206 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~~vil 206 (551)
...+.+|||||... +......++.++|++++|+|.++.........+...+. ..+.|+++
T Consensus 49 --~~~l~l~Dt~G~~~-----------~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 49 --VVRLQLWDIAGQER-----------FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred --EEEEEEEECCCchh-----------hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 03478999999853 45556778899999999999985222222233333332 24679999
Q ss_pred EEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+.+.... .+.........+ ..+.+.+||++|.|+
T Consensus 116 v~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~e~Sak~~~~v 156 (201)
T cd04107 116 LANKCDLKKRLAKDGEQMDQFCKENG------FIGWFETSAKEGINI 156 (201)
T ss_pred EEECCCcccccccCHHHHHHHHHHcC------CceEEEEeCCCCCCH
Confidence 9999999732111 111122221111 235788999999988
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=142.62 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=97.7
Q ss_pred HHhccCEEEEEEeCCCCCCCh-HHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 168 FAERVDRIILLFDAHKLDISD-EFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~-~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
.+.++|++++|+|+.++.++. ....++..+...++|+++|+||+|+.+..+.. .+...... ...+++++||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~-~~~~~~~~-------~g~~v~~vSA 146 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEE-LELVEALA-------LGYPVLAVSA 146 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHH-HHHHHHHh-------CCCeEEEEEC
Confidence 468999999999998633232 33456666667789999999999998753321 11111111 2347889999
Q ss_pred cCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHH
Q psy11743 247 FWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYL 326 (551)
Q Consensus 247 ~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l 326 (551)
+++.++ ++|...+ .+.+++++|.+|+||||++|.|
T Consensus 147 ~~g~gi-------------~~L~~~L--------------------------------~~k~~~~~G~sg~GKSTlin~l 181 (287)
T cd01854 147 KTGEGL-------------DELREYL--------------------------------KGKTSVLVGQSGVGKSTLINAL 181 (287)
T ss_pred CCCccH-------------HHHHhhh--------------------------------ccceEEEECCCCCCHHHHHHHH
Confidence 988876 4444433 1247999999999999999999
Q ss_pred HhCCCCc---cc--ccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 327 LERDFPG---IH--IGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 327 ~~~~~~~---~~--v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
++..... +. .+...+||+......-.....++||||+....
T Consensus 182 ~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~ 227 (287)
T cd01854 182 LPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFG 227 (287)
T ss_pred hchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccC
Confidence 9984211 11 12233466654433333356899999997755
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=133.50 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=90.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce---EEEEEeCCC-ccccCCCCcccccccccccccceeEEec
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER-EGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~---~~~i~~~~~-~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+|+++|.+|||||||+|++++..+.. ...+|... ...+.+... .... .+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~----------~~~~---------- 60 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP---KFITTVGIDFREKRVVYNSSGPGGT----------LGRG---------- 60 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCccceEEEEEEEEEcCcccccc----------ccCC----------
Confidence 4789999999999999999999877522 22222211 011111110 0000 0000
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIV 207 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilV 207 (551)
....+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 61 ---~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv 126 (180)
T cd04127 61 ---QRIHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLC 126 (180)
T ss_pred ---CEEEEEEEeCCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 003488999999643 556667788999999999999852211222344444432 35789999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+..... +......... ..+.+.+||++|.|+
T Consensus 127 ~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e~Sak~~~~v 165 (180)
T cd04127 127 GNKADLEDQRQVSEEQAKALADKY-------GIPYFETSAATGTNV 165 (180)
T ss_pred EeCccchhcCccCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 9999997532211 1111111111 236788999999988
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=134.08 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=89.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|+|||||++++++..+. ....||... +.... .++.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~---~~~~~t~~~~~~~~~------------------------------~~~~ 50 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI---DEYDPTIEDSYRKQC------------------------------VIDE 50 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCchhhEEEEEE------------------------------EECC
Confidence 4589999999999999999999987752 112223211 11000 0000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
. ...+.+|||||..+ +......++..+|++++|+|+++.........+...+. ..+.|+++|+|
T Consensus 51 ~-~~~l~i~Dt~G~~~-----------~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 118 (189)
T PTZ00369 51 E-TCLLDILDTAGQEE-----------YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGN 118 (189)
T ss_pred E-EEEEEEEeCCCCcc-----------chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 0 02478999999865 44455667889999999999986222122234444433 23679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.....+....... +.... ..+++.+||++|.|+
T Consensus 119 K~Dl~~~~~i~~~~~~~-~~~~~-----~~~~~e~Sak~~~gi 155 (189)
T PTZ00369 119 KCDLDSERQVSTGEGQE-LAKSF-----GIPFLETSAKQRVNV 155 (189)
T ss_pred CcccccccccCHHHHHH-HHHHh-----CCEEEEeeCCCCCCH
Confidence 99986432211111111 11111 236789999999988
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-14 Score=153.36 Aligned_cols=131 Identities=22% Similarity=0.334 Sum_probs=85.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE--EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+.|.|+++|++|+|||||+|+|++..+. ...++.+|..+ ..+....... + .+. ... ...+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~-~----------~~~-~~~---~~~v~ 65 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEG-I----------CGD-LLK---KFKIR 65 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccc-c----------ccc-ccc---ccccc
Confidence 4689999999999999999999998752 22333222211 1110000000 0 000 000 00000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
.+ ...+.+|||||+.. |.......+..+|++++|+|+++ +...+..+.+..++..+.|+++|+||+|
T Consensus 66 ~~-~~~l~~iDTpG~e~-----------f~~l~~~~~~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~~vpiIVv~NK~D 132 (590)
T TIGR00491 66 LK-IPGLLFIDTPGHEA-----------FTNLRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYKTPFVVAANKID 132 (590)
T ss_pred cc-cCcEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCc-CCCHhHHHHHHHHHHcCCCEEEEEECCC
Confidence 00 02489999999864 55556667789999999999986 6777777777777778899999999999
Q ss_pred CCC
Q psy11743 213 MVD 215 (551)
Q Consensus 213 l~~ 215 (551)
+.+
T Consensus 133 l~~ 135 (590)
T TIGR00491 133 RIP 135 (590)
T ss_pred ccc
Confidence 974
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.1e-14 Score=127.40 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=88.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|++++..... .. +|... ...+. +. .
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~--~~--~t~~~~~~~~~------------------~~-----~----------- 42 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT--TI--PTIGFNVETVE------------------YK-----N----------- 42 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC--CC--CCcCcceEEEE------------------EC-----C-----------
Confidence 48999999999999999999987321 11 11110 00000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+ . ..+.|+++|+||+|
T Consensus 43 ~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd00878 43 VSFTVWDVGGQDK-----------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQD 111 (158)
T ss_pred EEEEEEECCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccC
Confidence 3489999999764 3445667789999999999998622122222333222 2 34789999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+. .. .++.. ......+++.+||++|.|+
T Consensus 112 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 112 LPGALSVSEL-IE---KLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CccccCHHHH-HH---hhChhhccCCcEEEEEeeCCCCCCH
Confidence 9864322111 11 12211 1223457889999999887
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-14 Score=135.47 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=88.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|++..+. ....||...-... ..+.+++...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~---~~~~~T~~~d~~~----------------------------~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG---KSYKQTIGLDFFS----------------------------KRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC---CCCCCceeEEEEE----------------------------EEEEeCCCCE
Confidence 36999999999999999999987752 2223332211000 0001111001
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCcEEEEEcC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDKIRIVLNK 210 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++.........+...+.+ .+.|+++|.||
T Consensus 50 ~~~~i~Dt~G~~~-----------~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK 118 (215)
T cd04109 50 VTLQVWDIGGQSI-----------GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNK 118 (215)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence 3488999999643 445566778999999999999863222222344454442 23478999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+........ ......... ..+.+.+||++|.++
T Consensus 119 ~DL~~~~~v~~~~~~~~~~~~-------~~~~~~iSAktg~gv 154 (215)
T cd04109 119 TDLEHNRTVKDDKHARFAQAN-------GMESCLVSAKTGDRV 154 (215)
T ss_pred cccccccccCHHHHHHHHHHc-------CCEEEEEECCCCCCH
Confidence 99975332211 111111111 135678999999988
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-14 Score=153.76 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=99.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCC--CCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIH--IGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~--~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|+++|++|+|||||+|+|+|.+..... ..++.|.+.... .+..++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~------------------------------~~~~~~-- 49 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFA------------------------------YFPLPD-- 49 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEE------------------------------EEEeCC--
Confidence 6899999999999999999986521111 111122111100 000111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
..+.+|||||+.. |...+...+.++|++++|+|+.+ +...+..+.+..+...+.| +++|+||+|+.
T Consensus 50 -~~v~~iDtPGhe~-----------f~~~~~~g~~~aD~aILVVDa~~-G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 -YRLGFIDVPGHEK-----------FISNAIAGGGGIDAALLVVDADE-GVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred -EEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 3589999999753 66677778899999999999996 6667777777777777888 99999999998
Q ss_pred CHHHHHH---HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMR---VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~---~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.... .........+. .+..+++++||++|.|+
T Consensus 117 ~~~~~~~~~~ei~~~l~~~~~---~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 117 NEEEIKRTEMFMKQILNSYIF---LKNAKIFKTSAKTGQGI 154 (581)
T ss_pred CHHHHHHHHHHHHHHHHHhCC---CCCCcEEEEeCCCCCCc
Confidence 7654322 22222222221 12457899999999998
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=152.90 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=99.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|+++|+.++|||||+|+|+|.+...... ..+.|.+.... ....++.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~------------------------------~~~~~~g- 50 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA------------------------------YWPQPDG- 50 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE------------------------------EEecCCC-
Confidence 68999999999999999999865211111 11222211100 0001111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
..+.+|||||+.. |...+...+..+|++++|+|+.. +...+..+.+..+...+.| +++|+||+|+.
T Consensus 51 -~~i~~IDtPGhe~-----------fi~~m~~g~~~~D~~lLVVda~e-g~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 51 -RVLGFIDVPGHEK-----------FLSNMLAGVGGIDHALLVVACDD-GVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred -cEEEEEECCCHHH-----------HHHHHHHHhhcCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 3489999999853 66677777899999999999996 7888888888888777777 57999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+............+... +....+++.+||++|.|+
T Consensus 118 ~~~~~~~v~~ei~~~l~~~-~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 118 DEARIAEVRRQVKAVLREY-GFAEAKLFVTAATEGRGI 154 (614)
T ss_pred CHHHHHHHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCC
Confidence 7544332222111111111 223457899999999988
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=125.91 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=93.7
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccC
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKG 138 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 138 (551)
|+++|.+|+|||||+|.|++.... ....+.+.++......... ..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~~~~~~~~t~~~~~~~~~----------------------------------~~ 46 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGKTQLINFFNVN----------------------------------DK 46 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-eeecCCCCcceeEEEEEcc----------------------------------Ce
Confidence 799999999999999999954431 1222222221111110000 24
Q ss_pred eEEEeCCCCCCCcccccccccchHHHHHHHH---hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 139 ISIVDTPGILSGEKQRVDRGYDFTGVLEWFA---ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 139 ~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
+.++||||+..... .......+...+..++ +.++++++|+|... ..+.....+..++...+.|+++|+||+|+..
T Consensus 47 ~~~~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 47 FRLVDLPGYGYAKV-SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRH-GPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred EEEecCCCcccccc-CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 89999999876321 1111112333333333 45688999999985 5556666777888877899999999999986
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..+...........+.. .....+++++||+.+.++
T Consensus 125 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 125 KSELAKALKEIKKELKL--FEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hHHHHHHHHHHHHHHHh--ccCCCceEEEecCCCCCH
Confidence 55433222222111210 123457789999988776
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-14 Score=152.34 Aligned_cols=149 Identities=25% Similarity=0.169 Sum_probs=105.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+..+|+++|+||||||||+|+|+|.+. .+..=|+.|-++........ .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~-----------------~-------------- 49 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYK-----------------G-------------- 49 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEec-----------------C--------------
Confidence 346799999999999999999999874 36677777877765533211 1
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
+.+.+||.||..+-... +. -.+.++.++ ..+|+++-|+|++++ +....+.-++.+.++|+++++|++|
T Consensus 50 --~~i~ivDLPG~YSL~~~--S~---DE~Var~~ll~~~~D~ivnVvDAtnL---eRnLyltlQLlE~g~p~ilaLNm~D 119 (653)
T COG0370 50 --HEIEIVDLPGTYSLTAY--SE---DEKVARDFLLEGKPDLIVNVVDATNL---ERNLYLTLQLLELGIPMILALNMID 119 (653)
T ss_pred --ceEEEEeCCCcCCCCCC--Cc---hHHHHHHHHhcCCCCEEEEEcccchH---HHHHHHHHHHHHcCCCeEEEeccHh
Confidence 45999999999874332 21 145666666 578999999999862 3334455566678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....+...-....+...+| .|++.+||.+|.|+
T Consensus 120 ~A~~~Gi~ID~~~L~~~LG-------vPVv~tvA~~g~G~ 152 (653)
T COG0370 120 EAKKRGIRIDIEKLSKLLG-------VPVVPTVAKRGEGL 152 (653)
T ss_pred hHHhcCCcccHHHHHHHhC-------CCEEEEEeecCCCH
Confidence 8765322111222222333 48899999999986
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=150.74 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=100.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.+.|+|+++|+.|+|||||+++|.+.++.. ...++.|.+.... +.+ +
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~-------------------------------~ 132 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVEN-------------------------------E 132 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEE-------------------------------C
Confidence 356999999999999999999999877532 1122223221110 000 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
+. ..++||||||+.+ |.......+..+|++++|+|+.+ +...+..+.+..+...+.|+++++||+|
T Consensus 133 ~~--~~i~~iDTPGhe~-----------F~~~r~rga~~aDiaILVVda~d-gv~~qT~e~i~~~~~~~vPiIVviNKiD 198 (587)
T TIGR00487 133 DG--KMITFLDTPGHEA-----------FTSMRARGAKVTDIVVLVVAADD-GVMPQTIEAISHAKAANVPIIVAINKID 198 (587)
T ss_pred CC--cEEEEEECCCCcc-----------hhhHHHhhhccCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEEEEECcc
Confidence 00 2589999999865 45555667889999999999986 6777777777777778899999999999
Q ss_pred CCC--HHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 213 MVD--HQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~--~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
+.. .+.... .+...+.... ....+++++||++|.|+
T Consensus 199 l~~~~~e~v~~----~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 199 KPEANPDRVKQ----ELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred cccCCHHHHHH----HHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 964 222222 1112222111 11246889999999998
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=132.23 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=68.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~Dl~~ 215 (551)
..+.||||||+.. +...+...+..+|++++|+|+...+...+..+.+..+...+ .|+++|+||+|+..
T Consensus 83 ~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 5699999999643 66677778889999999999986334444444555554444 46899999999987
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..............+... .....+++++||++|.|+
T Consensus 152 ~~~~~~~~~~i~~~~~~~-~~~~~~i~~vSA~~g~gi 187 (203)
T cd01888 152 EEQALENYEQIKKFVKGT-IAENAPIIPISAQLKYNI 187 (203)
T ss_pred HHHHHHHHHHHHHHHhcc-ccCCCcEEEEeCCCCCCH
Confidence 544322222111111110 122457899999999887
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-14 Score=129.71 Aligned_cols=144 Identities=18% Similarity=0.182 Sum_probs=88.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE---EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~---i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+++|.+|||||||++++++..+. ....||...... +..+ |.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~~~~~~~-----------------~~-------------- 47 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD---KNYKATIGVDFEMERFEIL-----------------GV-------------- 47 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEEEEEC-----------------CE--------------
Confidence 6899999999999999999998753 222233221111 0000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC----CCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH----DDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.+. ..|+++|.||
T Consensus 48 -~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK 115 (170)
T cd04108 48 -PFSLQLWDTAGQER-----------FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTK 115 (170)
T ss_pred -EEEEEEEeCCChHH-----------HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 03489999999754 4555667789999999999997522233334555554322 2458999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..+... ......+.... ..+.+.+||++|.|+
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~g~~v 153 (170)
T cd04108 116 KDLSSPAQYALMEQDAIKLAAEM-----QAEYWSVSALSGENV 153 (170)
T ss_pred hhcCccccccccHHHHHHHHHHc-----CCeEEEEECCCCCCH
Confidence 99865432110 00011111111 135678999999988
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.8e-14 Score=129.11 Aligned_cols=144 Identities=21% Similarity=0.204 Sum_probs=86.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|||||||+|+|.+..+. .+.||...... +.+ . +
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~----~~~~T~~~~~~~~~~------------------~-----~----------- 42 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM----QPIPTIGFNVETVEY------------------K-----N----------- 42 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC----CcCCcCceeEEEEEE------------------C-----C-----------
Confidence 4899999999999999999987531 23444332111 100 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-C---CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-G---HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|+++.........++..+. . .+.|+++|+||+|
T Consensus 43 ~~i~l~Dt~G~~~-----------~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 43 LKFTIWDVGGKHK-----------LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred EEEEEEECCCChh-----------cchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence 3489999999854 34455667789999999999985222222233333332 2 2478999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+ .... +.+..+......+++.+||++|.|+
T Consensus 112 l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 112 VAGALSVEE-MTEL-LSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred cccCCCHHH-HHHH-hCCccccCCCcEEEEeCcCCCCCCH
Confidence 864311111 1111 1111110111225667899999988
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=129.65 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=88.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|+|||||+++|++..+.. . .||..... .+.. ..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~--~~t~~~~~~~~~~-----------------------~~--------- 58 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH--T--SPTIGSNVEEIVY-----------------------KN--------- 58 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC--c--CCccccceEEEEE-----------------------CC---------
Confidence 4689999999999999999999876532 1 22221111 1000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHH-HHHHHhC---CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRR-SIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~---~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++........+ +...+.. .+.|+++|+||
T Consensus 59 --~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK 125 (174)
T cd04153 59 --IRFLMWDIGGQES-----------LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANK 125 (174)
T ss_pred --eEEEEEECCCCHH-----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence 3589999999853 45555667899999999999985221111122 2233322 35899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ ... .++.. ......+++.+||++|.|+
T Consensus 126 ~Dl~~~~~~~~-i~~---~l~~~~~~~~~~~~~~~SA~~g~gi 164 (174)
T cd04153 126 QDLKGAMTPAE-ISE---SLGLTSIRDHTWHIQGCCALTGEGL 164 (174)
T ss_pred CCCCCCCCHHH-HHH---HhCcccccCCceEEEecccCCCCCH
Confidence 99864211111 111 12210 0112346788999999988
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=129.13 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=88.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC-CCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-SPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-~~~l 136 (551)
+|+++|.+|+|||||+|+|++..+.. ...+|........ .+.++ +...
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~---~~~~t~~~~~~~~----------------------------~~~~~~~~~~ 50 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK---DYKKTIGVDFLEK----------------------------QIFLRQSDED 50 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CCCCcEEEEEEEE----------------------------EEEEcCCCCE
Confidence 69999999999999999999876521 1222221110000 00000 0000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~ 214 (551)
..+.++||||... +......+++.+|++++|+|+.+.........++..+.. .+.|+++|+||+|+.
T Consensus 51 ~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 51 VRLMLWDTAGQEE-----------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEEEEeeCCchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 3589999999643 555667788999999999999852222222344443432 478999999999997
Q ss_pred CHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....+.. ........+ ..+++.+||+++.++
T Consensus 120 ~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 151 (162)
T cd04106 120 DQAVITNEEAEALAKRL-------QLPLFRTSVKDDFNV 151 (162)
T ss_pred cccCCCHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 5432211 111111111 136788999988887
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=155.13 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=100.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+.|.|+|+|+.|+|||||+++|.+.++.. ...++.|.+..... + .+.+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~~GIT~~iga~~----------------v------~~~~-------- 336 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEAGGITQHIGAYQ----------------V------ETNG-------- 336 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-cccCceeeeccEEE----------------E------EECC--------
Confidence 467999999999999999999998876521 11111221111000 0 0001
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..++||||||+.. |.......+..+|++|+|+|+.+ +...+..+.+..+...+.|+++|+||+|+
T Consensus 337 ---~~ItfiDTPGhe~-----------F~~m~~rga~~aDiaILVVdAdd-Gv~~qT~e~i~~a~~~~vPiIVviNKiDl 401 (787)
T PRK05306 337 ---GKITFLDTPGHEA-----------FTAMRARGAQVTDIVVLVVAADD-GVMPQTIEAINHAKAAGVPIIVAINKIDK 401 (787)
T ss_pred ---EEEEEEECCCCcc-----------chhHHHhhhhhCCEEEEEEECCC-CCCHhHHHHHHHHHhcCCcEEEEEECccc
Confidence 4589999999865 55556667889999999999986 77777777788887889999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
.... ..++. ..+...+.+.. ....+++++||++|.|+
T Consensus 402 ~~a~-~e~V~-~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 402 PGAN-PDRVK-QELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred cccC-HHHHH-HHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 6421 11111 11111222111 11357899999999998
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=129.13 Aligned_cols=145 Identities=18% Similarity=0.207 Sum_probs=88.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|||||||+++|....+. . ..||..... .+. +. .
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~--~~~t~~~~~~~~~------------------~~-----~--------- 56 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--T--TIPTIGFNVETVT------------------YK-----N--------- 56 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--C--cCCccccceEEEE------------------EC-----C---------
Confidence 578999999999999999999755531 1 223332111 000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-hC---CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-RG---HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~~vilVlNK 210 (551)
..+.++||||... +......++.++|++++|+|+++........+++..+ .. .+.|+++|+||
T Consensus 57 --~~l~l~D~~G~~~-----------~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 123 (175)
T smart00177 57 --ISFTVWDVGGQDK-----------IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANK 123 (175)
T ss_pred --EEEEEEECCCChh-----------hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeC
Confidence 3489999999754 4556667789999999999998532222223333333 22 25799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ +...+ .+...... ...++.+||++|.|+
T Consensus 124 ~Dl~~~~~~~~-i~~~~-~~~~~~~~-~~~~~~~Sa~~g~gv 162 (175)
T smart00177 124 QDLPDAMKAAE-ITEKL-GLHSIRDR-NWYIQPTCATSGDGL 162 (175)
T ss_pred cCcccCCCHHH-HHHHh-CccccCCC-cEEEEEeeCCCCCCH
Confidence 99864311111 11111 11111122 234567999999998
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=131.12 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=88.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
++|+++|..|||||||+|+|++..+.. ...+|.. ... .+..+ |.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~~------------- 47 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE---STKSTIGVDFKIKTVYIE-----------------NK------------- 47 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeEEEEEEEEEC-----------------CE-------------
Confidence 479999999999999999999887632 1122211 110 11000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.. ...|+++|+||
T Consensus 48 --~~~~~i~Dt~g~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK 114 (188)
T cd04125 48 --IIKLQIWDTNGQER-----------FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANK 114 (188)
T ss_pred --EEEEEEEECCCcHH-----------HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 02478999999643 455667788999999999999862222222344444432 35789999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+...........+ .... ..+.+.+||++|.++
T Consensus 115 ~Dl~~~~~v~~~~~~~~-~~~~-----~~~~~evSa~~~~~i 150 (188)
T cd04125 115 SDLVNNKVVDSNIAKSF-CDSL-----NIPFFETSAKQSINV 150 (188)
T ss_pred CCCcccccCCHHHHHHH-HHHc-----CCeEEEEeCCCCCCH
Confidence 99975332211111111 1111 226788999999887
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=135.00 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|++..+.. ....+|......... ..+.| . .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~--~~~~~t~~~~~~~~~----~~~~~----------~---------------~ 49 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV--GPYQNTIGAAFVAKR----MVVGE----------R---------------V 49 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC--cCcccceeeEEEEEE----EEECC----------E---------------E
Confidence 379999999999999999999887521 111222211110000 00000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl~ 214 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+... +.|+++|+||+|+.
T Consensus 50 ~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 50 VTLGIWDTAGSER-----------YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEEECCCchh-----------hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 2377999999754 2334455678999999999998532222224455555533 68999999999986
Q ss_pred CHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... ..........+. .....+++.+||++|.|+
T Consensus 119 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~~~gv 154 (193)
T cd04118 119 EQDRSLRQVDFHDVQDFA---DEIKAQHFETSSKTGQNV 154 (193)
T ss_pred ccccccCccCHHHHHHHH---HHcCCeEEEEeCCCCCCH
Confidence 43210 000000000110 111245788999999987
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=135.10 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=104.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcc------ccCCC---Ccccccc--------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG------SVPFS---PLDKFGK-------- 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~------~i~g~---~~~~~~~-------- 117 (551)
..|.|+++|+.|+||||++++|+|..+. +.+.+..|.+.+.+.-..... ...+. .|+.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~--~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL--PRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCcc--ccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998743 333444444433332211111 11111 1222211
Q ss_pred ---cccccccceeEEecCCCCccCeEEEeCCCCCCCcccc--cccccchHHHHHHHHh-ccCEEEEEEeCCCCCCChHH-
Q psy11743 118 ---FGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQR--VDRGYDFTGVLEWFAE-RVDRIILLFDAHKLDISDEF- 190 (551)
Q Consensus 118 ---~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~--~~~~~~~~~~~~~~~~-~aD~il~VvDa~~~~~~~~~- 190 (551)
.+..+......+.+.+|....+++|||||+....... ......+.+++..+++ ..+++|+|+|++. ++..++
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~-d~~~~d~ 181 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV-DLANSDA 181 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC-CCCchhH
Confidence 1223444455666777777899999999997431110 1111235667777887 5569999999985 677766
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 191 RRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 191 ~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.++++.+...++++++|+||+|..++.
T Consensus 182 l~ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 182 LKLAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHHHcCCcEEEEEECCCCCCcc
Confidence 688889988999999999999998753
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=132.22 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=90.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE---EEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~---~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..++|+++|.+|||||||+++|++..+. ....||.... ..+..+ |.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-----------------~~----------- 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS---GSYITTIGVDFKIRTVEIN-----------------GE----------- 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCccccceeEEEEEEEC-----------------CE-----------
Confidence 3578999999999999999999988752 1222232111 010000 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+.. ...|+++|+|
T Consensus 54 ----~~~l~l~D~~G~~~-----------~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgN 118 (199)
T cd04110 54 ----RVKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGN 118 (199)
T ss_pred ----EEEEEEEeCCCchh-----------HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 02478999999753 445566778899999999999862222222345554443 3578999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..... +......... ..+++.+||++|.|+
T Consensus 119 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~gi 155 (199)
T cd04110 119 KNDDPERKVVETEDAYKFAGQM-------GISLFETSAKENINV 155 (199)
T ss_pred CcccccccccCHHHHHHHHHHc-------CCEEEEEECCCCcCH
Confidence 99997543221 1111111111 136788999999988
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-14 Score=130.13 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=89.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||++++++..+.. ...||.. .+. .+..+ |. +
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~---~~~~t~~~~~~~~~~~~-----------------~~-------------~ 49 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD---YHDPTIEDAYKQQARID-----------------NE-------------P 49 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC---CcCCcccceEEEEEEEC-----------------CE-------------E
Confidence 579999999999999999999887632 2223322 111 01100 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+||
T Consensus 50 --~~l~i~Dt~G~~~-----------~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK 116 (172)
T cd04141 50 --ALLDILDTAGQAE-----------FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNK 116 (172)
T ss_pred --EEEEEEeCCCchh-----------hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 2478999999754 45556677889999999999986322222233333333 246899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+.......+ . . ....+.+.+||++|.|+
T Consensus 117 ~Dl~~~~~v~~~~~~~~-a--~---~~~~~~~e~Sa~~~~~v 152 (172)
T cd04141 117 VDLESQRQVTTEEGRNL-A--R---EFNCPFFETSAALRHYI 152 (172)
T ss_pred hhhhhcCccCHHHHHHH-H--H---HhCCEEEEEecCCCCCH
Confidence 99864322211111111 1 1 11236788999999988
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-14 Score=143.83 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=108.7
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCC
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPE 238 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~ 238 (551)
++..+...+..+|+++.|+||++ +.......+.+++++. .+.+|+|+|||||++.-.... |... +.. ..
T Consensus 203 IW~ELyKViDSSDVvvqVlDARD-PmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~-Wv~~---lSk----ey 273 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARD-PMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAK-WVRH---LSK----EY 273 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccC-CcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHH-HHHH---Hhh----hC
Confidence 56667778899999999999997 6766666777777743 467999999999998643222 2211 222 22
Q ss_pred ceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCC
Q psy11743 239 VARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTG 318 (551)
Q Consensus 239 ~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g 318 (551)
+.+.|.++.++. + +...|+..++++.+ + + ...+.+.|+|+|.||||
T Consensus 274 PTiAfHAsi~ns-f-----------GKgalI~llRQf~k---------------L-h------~dkkqISVGfiGYPNvG 319 (572)
T KOG2423|consen 274 PTIAFHASINNS-F-----------GKGALIQLLRQFAK---------------L-H------SDKKQISVGFIGYPNVG 319 (572)
T ss_pred cceeeehhhcCc-c-----------chhHHHHHHHHHHh---------------h-c------cCccceeeeeecCCCCc
Confidence 234444443221 1 11334444432211 1 1 12356889999999999
Q ss_pred hhHHHHHHHhCCCCcccccCCCcccce-EEEEecCCCccccCCceeecCC
Q psy11743 319 KTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 319 Kss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|||+||+|..++ .|.|.+.||.|+- ..++. -..+.|||+||++-|.
T Consensus 320 KSSiINTLR~Kk--VCkvAPIpGETKVWQYItL-mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 320 KSSIINTLRKKK--VCKVAPIPGETKVWQYITL-MKRIFLIDCPGVVYPS 366 (572)
T ss_pred hHHHHHHHhhcc--cccccCCCCcchHHHHHHH-HhceeEecCCCccCCC
Confidence 999999999999 5999999999972 22221 2457799999999887
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=139.43 Aligned_cols=148 Identities=22% Similarity=0.291 Sum_probs=99.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCC----CCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHI----GPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~----~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
..-|.|+++|.+|+|||||+|+|++.... +.+ +-.|||.+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l-------------------------------- 236 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIEL-------------------------------- 236 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEe--------------------------------
Confidence 35699999999999999999999987743 122 22334433321
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRI 206 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vil 206 (551)
++. +.+.+-||-|+.+.-...+-. -.+.+......||+++.|+|++++..........+.|.+ ..+|+++
T Consensus 237 --~~g--~~vlLtDTVGFI~~LP~~LV~---AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~ 309 (411)
T COG2262 237 --GDG--RKVLLTDTVGFIRDLPHPLVE---AFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIIL 309 (411)
T ss_pred --CCC--ceEEEecCccCcccCChHHHH---HHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 110 569999999998754433222 234455567889999999999985544444444444443 5689999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|++.+..... ..+ . ..| ..+++||++|.|+
T Consensus 310 v~NKiD~~~~~~~~~----~~~---~--~~~--~~v~iSA~~~~gl 344 (411)
T COG2262 310 VLNKIDLLEDEEILA----ELE---R--GSP--NPVFISAKTGEGL 344 (411)
T ss_pred EEecccccCchhhhh----hhh---h--cCC--CeEEEEeccCcCH
Confidence 999999997654211 111 1 112 5789999999987
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=147.26 Aligned_cols=187 Identities=15% Similarity=0.165 Sum_probs=116.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
...|+++|.||+||||++|+|+|..+ +.+++.|+||+... ...++.++.++||||+..+. ..++..+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~------~~l~~~~~~ 76 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK------RALNRAMNK 76 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch------hHHHHHHHH
Confidence 45799999999999999999999984 67899999997433 23356789999999998754 222233334
Q ss_pred hhhhhccccCccc-------c---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 383 RFQCSLVNSPVLK-------G---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 383 ~~~~~~~~~~~~~-------~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
.+..++..+|+.. + .......++.++|+||+|+... . . ......+.+.
T Consensus 77 ~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~---------~--~----~l~~~~~~l~- 140 (292)
T PRK00089 77 AAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD---------K--E----ELLPLLEELS- 140 (292)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC---------H--H----HHHHHHHHHH-
Confidence 4444555555321 0 1111234566788888887200 0 0 0000111110
Q ss_pred ccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCC
Q psy11743 447 DMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFT 526 (551)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 526 (551)
....+.+..+++++.+.+.+.|.+.+....++.+ .+++.+.+ +|.+
T Consensus 141 ------------------------~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~----~~y~~~~~------td~~ 186 (292)
T PRK00089 141 ------------------------ELMDFAEIVPISALKGDNVDELLDVIAKYLPEGP----PYYPEDQI------TDRP 186 (292)
T ss_pred ------------------------hhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCC----CCCCCCCC------CCCC
Confidence 0011123344555555555554444333333333 57777777 9999
Q ss_pred CCCccchHHHHHHHHHhHhhhhhc
Q psy11743 527 KFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
.++.+.|.+||++...+.+|+|.-
T Consensus 187 ~r~~~~EiiRe~~~~~l~~e~p~~ 210 (292)
T PRK00089 187 ERFLAAEIIREKLLRLLGDELPYS 210 (292)
T ss_pred HHHHHHHHHHHHHHhhCCccCCce
Confidence 999999999999999999999973
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=129.95 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=88.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|++|||||||+|+|.+..+.. ..||.... ..+..+ +
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~----~~~T~~~~~~~i~~~-----------------------~-------- 62 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ----HVPTLHPTSEELTIG-----------------------N-------- 62 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc----cCCccCcceEEEEEC-----------------------C--------
Confidence 45889999999999999999999876522 12222111 111110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+..........+..+. ..+.|+++|+|
T Consensus 63 ---~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~N 128 (190)
T cd00879 63 ---IKFKTFDLGGHEQ-----------ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGN 128 (190)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEe
Confidence 3478999999653 34455667899999999999985221122223333222 24689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHccccc----------CCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVL----------QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~----------~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ ....+. ..... .....+.+.+||++|.|+
T Consensus 129 K~Dl~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 179 (190)
T cd00879 129 KIDLPGAVSEEE-LRQALG-LYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGY 179 (190)
T ss_pred CCCCCCCcCHHH-HHHHhC-cccccccccccccccCceeEEEEEeEecCCCCh
Confidence 999864211111 112111 10000 011235788999999988
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-14 Score=130.28 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=86.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||+|+|++..+. ....+|.. ....... ++ +..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~------~~----------~~~-------------- 47 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP---TEYVPTVFDNYSATVT------VD----------GKQ-------------- 47 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeeeEEEEE------EC----------CEE--------------
Confidence 37999999999999999999998752 11112211 1111000 00 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC-CCChHHHHHHHHHhC--CCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFRRSIEALRG--HDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~-~~~~~~~~~l~~l~~--~~~~vilVlNK~D 212 (551)
..+.++||||.... .......+..+|++++|+|+.+. .+......++..+.. .+.|+++|+||+|
T Consensus 48 -~~l~~~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (171)
T cd00157 48 -VNLGLWDTAGQEEY-----------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKID 115 (171)
T ss_pred -EEEEEEeCCCcccc-----------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHH
Confidence 34889999998741 11222345789999999999851 111222334444443 3599999999999
Q ss_pred CCCHHHHHHH--------HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRV--------YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~--------~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+....... .......... .....+.+.+||++|.|+
T Consensus 116 l~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi 161 (171)
T cd00157 116 LRDDENTLKKLEKGKEPITPEEGEKLAK--EIGAIGYMECSALTQEGV 161 (171)
T ss_pred hhhchhhhhhcccCCCccCHHHHHHHHH--HhCCeEEEEeecCCCCCH
Confidence 9865432100 0000001111 122236789999999987
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=126.12 Aligned_cols=144 Identities=22% Similarity=0.275 Sum_probs=87.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|.+|+|||||+|+|++..+.. ...+++ .......... .+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~--------------- 48 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE---KHESTTQASFFQKTVNI---------------GGKR--------------- 48 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CcCCccceeEEEEEEEE---------------CCEE---------------
Confidence 69999999999999999999887532 111222 2211100000 0000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+|+
T Consensus 49 ~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~ 117 (162)
T cd04123 49 IDLAIWDTAGQER-----------YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred EEEEEEECCchHH-----------HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 2488999999643 34455566789999999999986222222233333333 236899999999999
Q ss_pred CCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...... .+......... ..+.+.+|++++.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~gi 150 (162)
T cd04123 118 ERQRVVSKSEAEEYAKSV-------GAKHFETSAKTGKGI 150 (162)
T ss_pred ccccCCCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 753221 11111222111 235688999999987
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=142.35 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=99.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|+.++|||||+++|++.... .+. .+.....++....+..-.|...+. .....+.+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~--~~~~~~~~~d~~~~E~~rg~T~~~------------~~~~~~~~ 73 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAE---RGL--NQAKDYDSIDAAPEEKERGITINT------------AHVEYETE 73 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhh---hcc--ccccchhhhcCCHHHHhcCccEEE------------EeeEecCC
Confidence 3468999999999999999999974210 000 000000000000000001111110 00000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl 213 (551)
-..+.+|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...++| +++|+||+|+
T Consensus 74 -~~~i~~iDtPGh~~-----------f~~~~~~~~~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 74 -KRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred -CcEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 14689999999753 66667777789999999999986 7888888888888888888 6788999999
Q ss_pred CCHHHHHHHH----HHHHHHcccccCCCCceEEEecccCCC
Q psy11743 214 VDHQQLMRVY----GALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 214 ~~~~~~~~~~----~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
.+.++..+.+ ...+...+. .....+++++||++|.
T Consensus 141 ~~~~~~~~~i~~~i~~~l~~~~~--~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 141 VDDEELLELVEMEVRELLSEYDF--PGDDIPVIRGSALKAL 179 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHhCC--CcCCccEEEeeccccc
Confidence 8654433322 222222222 1224689999999874
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=127.39 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=87.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE--EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|.+|+|||||++++++..+.. ...+|... +. .+... +.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----------------~~------------ 52 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDT---QLFHTIGVEFLNKDLEVD-----------------GH------------ 52 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCc---CcCCceeeEEEEEEEEEC-----------------Ce------------
Confidence 4789999999999999999999877532 11122111 10 00000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-------CCCCcEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-------GHDDKIR 205 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~~vi 205 (551)
...+.++||||... +......++..+|++++|+|..+.........+...+. ..+.|++
T Consensus 53 ---~~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii 118 (170)
T cd04116 53 ---FVTLQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 118 (170)
T ss_pred ---EEEEEEEeCCChHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE
Confidence 02478999999753 45556667899999999999885221122223333222 1357999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.......+.........+ ..+.+.+||++|.++
T Consensus 119 lv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v 159 (170)
T cd04116 119 VLGNKNDIPERQVSTEEAQAWCRENG------DYPYFETSAKDATNV 159 (170)
T ss_pred EEEECccccccccCHHHHHHHHHHCC------CCeEEEEECCCCCCH
Confidence 99999998642211111222222221 236788999999887
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=156.04 Aligned_cols=173 Identities=20% Similarity=0.157 Sum_probs=103.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCC----------CCCCccceEEE--EEeCCCccccCCCCcccccccccccc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI----------GPEPTTDRFIA--VMYDEREGSVPFSPLDKFGKFGNSFL 123 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~----------~~~~tt~~~~~--i~~~~~~~~i~g~~~~~~~~~g~~~~ 123 (551)
..+|+++|++|+|||||+|+|+...-.+... ..+.|++.+.. ++....+..-.|..++. .++.-.+
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~--~~~~~~~ 101 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDV--AYRYFAT 101 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCcee--eeeEEcc
Confidence 4679999999999999999999876543311 34445555442 22211111111211110 0111111
Q ss_pred cceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-C
Q psy11743 124 NRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-D 202 (551)
Q Consensus 124 ~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~ 202 (551)
.+ .++.||||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+ +
T Consensus 102 ~~-----------~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~-g~~~~t~e~~~~~~~~~~~ 158 (632)
T PRK05506 102 PK-----------RKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARK-GVLTQTRRHSFIASLLGIR 158 (632)
T ss_pred CC-----------ceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCC-CccccCHHHHHHHHHhCCC
Confidence 11 5689999999753 45555567899999999999985 66666656666555555 5
Q ss_pred cEEEEEcCCCCCC-HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 203 KIRIVLNKADMVD-HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 203 ~vilVlNK~Dl~~-~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
++++|+||+|+.+ .++..+.....+..+..-.+....+++++||++|.|+.
T Consensus 159 ~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~ 210 (632)
T PRK05506 159 HVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVV 210 (632)
T ss_pred eEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcc
Confidence 6888999999985 22211112222211111012234578999999999984
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=132.72 Aligned_cols=146 Identities=17% Similarity=0.164 Sum_probs=88.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+|+|.+|||||||+++|++..+.. ..+..+.+... .+..+. .
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~-----------------~------------ 60 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVED--LAPTIGVDFKIKQLTVGG-----------------K------------ 60 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCceeEEEEEEEEECC-----------------E------------
Confidence 345799999999999999999999987532 22211111111 111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HH-HHHHHh----CCCCcEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RR-SIEALR----GHDDKIRI 206 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~-~l~~l~----~~~~~vil 206 (551)
...+.++||||... +......++..+|++++|+|+.+. -+... .. +...+. ..+.|+++
T Consensus 61 ---~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~vlv~D~~~~-~sf~~~~~~~~~~~~~~~~~~~~~~il 125 (211)
T PLN03118 61 ---RLKLTIWDTAGQER-----------FRTLTSSYYRNAQGIILVYDVTRR-ETFTNLSDVWGKEVELYSTNQDCVKML 125 (211)
T ss_pred ---EEEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 02488999999754 455566778999999999999852 11211 11 222222 23578999
Q ss_pred EEcCCCCCCHHHHHHH-HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRV-YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~-~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+......... ....... ...+.+.+||+++.++
T Consensus 126 v~NK~Dl~~~~~i~~~~~~~~~~~-------~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 126 VGNKVDRESERDVSREEGMALAKE-------HGCLFLECSAKTRENV 165 (211)
T ss_pred EEECccccccCccCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 9999999753322111 1111111 1235788999999988
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=127.00 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=86.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.|+++|.+|||||||+++|++..+. ....||.... ..+.. + +
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~---~~~~pt~g~~~~~i~~------------------~-----~----------- 43 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL---ESVVPTTGFNSVAIPT------------------Q-----D----------- 43 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc---ccccccCCcceEEEee------------------C-----C-----------
Confidence 3799999999999999999987642 2222332211 11100 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh--CCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR--GHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||... +......++.++|++++|+|+.+.........++..+. ..+.|+++|.||+|+.
T Consensus 44 ~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 44 AIMELLEIGGSQN-----------LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred eEEEEEECCCCcc-----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 3589999999764 44556678899999999999985221122233334332 2578999999999986
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
......+. .... .+..+......+.+.+||++...
T Consensus 113 ~~~~~~~i-~~~~-~~~~~~~~~~~~~~~~Sa~~~~s 147 (164)
T cd04162 113 AARSVQEI-HKEL-ELEPIARGRRWILQGTSLDDDGS 147 (164)
T ss_pred CCCCHHHH-HHHh-CChhhcCCCceEEEEeeecCCCC
Confidence 54322211 1111 11122222234566788887443
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=126.76 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=90.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEE--EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~--i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.++|+++|.+|+|||||+++|++..+. ...++|... +.. +... +.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-----------------~~------------ 54 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEIK-----------------GE------------ 54 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEEC-----------------CE------------
Confidence 478999999999999999999977642 223333211 100 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~~~~~vilVlN 209 (551)
. ..+.++||||... +......++..+|++++|+|+.+.........++..+ ...+.|+++|+|
T Consensus 55 -~--~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~N 120 (169)
T cd04114 55 -K--IKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGN 120 (169)
T ss_pred -E--EEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 0 2378899999753 4555677889999999999998521111222344333 334688999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++.......+... ...+.+.+||++|.|+
T Consensus 121 K~D~~~~~~i~~~~~~~~~~~------~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 121 KIDLAERREVSQQRAEEFSDA------QDMYYLETSAKESDNV 157 (169)
T ss_pred CcccccccccCHHHHHHHHHH------cCCeEEEeeCCCCCCH
Confidence 999975443222222222111 1246788999999887
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=127.43 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=88.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|..|||||||+++|....+. . ..||..... .+.. . .
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~--~~pt~g~~~~~~~~------------------~-----~-------- 60 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEY------------------K-----N-------- 60 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--c--ccCCcceeEEEEEE------------------C-----C--------
Confidence 3478999999999999999999876542 1 233322111 0000 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-hC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-RG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~~vilVlN 209 (551)
..+.++||||... +......++.++|++++|+|+++..........+..+ .. .+.|+++|+|
T Consensus 61 ---~~~~i~D~~Gq~~-----------~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ---ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 3489999999743 4556667789999999999998522222222233322 22 3689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHccccc-CCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVL-QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~-~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ +. ..++... .......+.+||++|.|+
T Consensus 127 K~Dl~~~~~~~~-~~---~~l~l~~~~~~~~~~~~~Sa~~g~gv 166 (181)
T PLN00223 127 KQDLPNAMNAAE-IT---DKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
T ss_pred CCCCCCCCCHHH-HH---HHhCccccCCCceEEEeccCCCCCCH
Confidence 999865322211 11 1233210 011123456899999998
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=127.58 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred EEEEEeccCCChHHHHHHHHhc--CCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER--DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~--~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|||||||+++|.+. .+ .....+|+........ +.++...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~---~~~~~~t~~~~~~~~~----------------------------~~~~~~~ 50 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVF---PKNYLMTTGCDFVVKE----------------------------VPVDTDN 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc---CccCCCceEEEEEEEE----------------------------EEeCCCC
Confidence 6999999999999999999864 32 1122223211110000 0000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
...+.++||||... +......++.++|++++|+|+++.........++..+.. .+.|+++|+||+|+
T Consensus 51 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 51 TVELFIFDSAGQEL-----------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEEECCCHHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 03488999999643 445566778999999999999852222222455555543 35899999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+..++..... ..+.... ..+.+.+||.++.|+
T Consensus 120 ~~~~~~~~~~~-~~~~~~~-----~~~~~~~Sa~~~~gi 152 (164)
T cd04101 120 ADKAEVTDAQA-QAFAQAN-----QLKFFKTSALRGVGY 152 (164)
T ss_pred ccccCCCHHHH-HHHHHHc-----CCeEEEEeCCCCCCh
Confidence 75432211111 1111111 235788999999988
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=133.51 Aligned_cols=147 Identities=17% Similarity=0.241 Sum_probs=93.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+...+|+++|.+|||||||+++|++..+.. ...+|.. .+. .+..+ +.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~---~~~~t~g~~~~~~~v~~~-----------------~~---------- 59 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL---ESKSTIGVEFATRTLQVE-----------------GK---------- 59 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeEEEEEEEEEEC-----------------CE----------
Confidence 345799999999999999999999987531 2222211 110 01000 00
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
...+.||||||... +......++..+|++|+|+|+++.........++..+.. .+.|+++|
T Consensus 60 -----~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv 123 (216)
T PLN03110 60 -----TVKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 123 (216)
T ss_pred -----EEEEEEEECCCcHH-----------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 02488999999653 555667788999999999999863222233445555443 46899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.............+. . ....+++.+||++|.++
T Consensus 124 ~nK~Dl~~~~~~~~~~~~~l~---~---~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 124 GNKSDLNHLRSVAEEDGQALA---E---KEGLSFLETSALEATNV 162 (216)
T ss_pred EEChhcccccCCCHHHHHHHH---H---HcCCEEEEEeCCCCCCH
Confidence 999998643222111111111 1 12347889999999988
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=126.12 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=88.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||++++++..+. ....+|.. .+.. +..+. .
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~---------------~---------------- 47 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI---ESYDPTIEDSYRKQVEIDG---------------R---------------- 47 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcchheEEEEEEECC---------------E----------------
Confidence 47999999999999999999987752 12222322 1111 00000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|.+++|+|..+.........+...+. ..+.|+++|+||
T Consensus 48 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 48 -QCDLEILDTAGTEQ-----------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred -EEEEEEEeCCCccc-----------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 02478999999764 45566677889999999999885222222233333332 347899999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+........ ........ ....+.+.+||+++.++
T Consensus 116 ~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 116 ADLEDDRQVSREDGVSLSQQ------WGNVPFYETSARKRTNV 152 (168)
T ss_pred hhccccCccCHHHHHHHHHH------cCCceEEEeeCCCCCCH
Confidence 99975432111 11111111 11246788999999987
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=124.84 Aligned_cols=143 Identities=19% Similarity=0.257 Sum_probs=88.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|++|||||||+|+|++..+ .....+++. ........ +.. .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~~~~~~~~~~~~~-----------------~~~---~----------- 46 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF---VEEYDPTIEDSYRKTIVV-----------------DGE---T----------- 46 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC---CcCcCCChhHeEEEEEEE-----------------CCE---E-----------
Confidence 489999999999999999998774 222222322 22111110 000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~D 212 (551)
..+.++||||... +.......+..+|++++|+|+.+.........+...+. ..+.|+++|+||+|
T Consensus 47 ~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 47 YTLDILDTAGQEE-----------FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEEECCChHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence 2478999999764 44556677889999999999985222222233333332 24789999999999
Q ss_pred CCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+...... .+.........+ .+.+.+||+++.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~S~~~~~~i 149 (160)
T cd00876 116 LENERQVSKEEGKALAKEWG-------CPFIETSAKDNINI 149 (160)
T ss_pred ccccceecHHHHHHHHHHcC-------CcEEEeccCCCCCH
Confidence 9863221 111111111111 46788999998887
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=126.50 Aligned_cols=143 Identities=20% Similarity=0.176 Sum_probs=86.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.|+++|.+|||||||+|+|.+... ....||..... .+.. + +
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~----~~~~~t~g~~~~~~~~------------------~-----~----------- 42 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP----KKVAPTVGFTPTKLRL------------------D-----K----------- 42 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC----ccccCcccceEEEEEE------------------C-----C-----------
Confidence 489999999999999999998621 12222321110 1000 0 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~D 212 (551)
..+.++||||... +......++.++|++++|+|+++.........++..+.. .+.|+++|+||+|
T Consensus 43 ~~~~i~D~~G~~~-----------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~D 111 (167)
T cd04161 43 YEVCIFDLGGGAN-----------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQD 111 (167)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCC
Confidence 3488999999753 455567788999999999999863222222344444432 3689999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccC-CC-CceEEEecccCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQ-TP-EVARVYIGSFWDQP 251 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~-~~-~~~~v~iSa~~g~~ 251 (551)
+.......+..... .+..+.. .. ..++..+||++|.+
T Consensus 112 l~~~~~~~~i~~~~--~l~~~~~~~~~~~~~~~~Sa~~g~~ 150 (167)
T cd04161 112 KKNALLGADVIEYL--SLEKLVNENKSLCHIEPCSAIEGLG 150 (167)
T ss_pred CcCCCCHHHHHHhc--CcccccCCCCceEEEEEeEceeCCC
Confidence 87543222221111 1222211 11 23567799998843
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=126.87 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=85.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+++++...+. ....+|... +..+.... .+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~---------------~~~--------------- 47 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE---KKYVATLGVEVHPLDFHT---------------NRG--------------- 47 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEE---------------CCE---------------
Confidence 37999999999999999999976642 112222211 11110000 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
...+.++||||... +......+...+|++++|+|.++.........++..+.+ .+.|+++|+||+|+
T Consensus 48 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl 116 (166)
T cd00877 48 KIRFNVWDTAGQEK-----------FGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred EEEEEEEECCCChh-----------hccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhc
Confidence 03488999999854 122233456789999999999852221222344444442 26999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.......+. ..+. .....+.+.+||++|.|+
T Consensus 117 ~~~~~~~~~--~~~~------~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 117 KDRKVKAKQ--ITFH------RKKNLQYYEISAKSNYNF 147 (166)
T ss_pred ccccCCHHH--HHHH------HHcCCEEEEEeCCCCCCh
Confidence 743211111 1111 112346788999999998
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=130.90 Aligned_cols=110 Identities=26% Similarity=0.414 Sum_probs=72.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|||||||+++|++..+.. ..||......... ++ . .
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~----~~~Tig~~~~~~~-----------------~~-----~-----------~ 44 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD----TVSTVGGAFYLKQ-----------------WG-----P-----------Y 44 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC----CCCccceEEEEEE-----------------ee-----E-----------E
Confidence 68999999999999999999988631 2233222111000 00 0 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl~ 214 (551)
.+.+|||||... +......++..+|++|+|+|+++.........++..+. ..+.|+++|.||+|+.
T Consensus 45 ~l~iwDt~G~e~-----------~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 45 NISIWDTAGREQ-----------FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEEEeCCCccc-----------chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 488999999754 34455567889999999999986222222222332232 2357899999999997
Q ss_pred C
Q psy11743 215 D 215 (551)
Q Consensus 215 ~ 215 (551)
.
T Consensus 114 ~ 114 (220)
T cd04126 114 E 114 (220)
T ss_pred c
Confidence 5
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=132.20 Aligned_cols=147 Identities=16% Similarity=0.270 Sum_probs=88.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|++..+... ..||... +..-. +.+....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~---~~~ti~~d~~~~~-----------------------------i~~~~~~ 50 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV---SDPTVGVDFFSRL-----------------------------IEIEPGV 50 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCceeceEEEEEE-----------------------------EEECCCC
Confidence 6899999999999999999999876322 1223211 10000 0000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+. ....|+++|.||+
T Consensus 51 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~ 119 (211)
T cd04111 51 RIKLQLWDTAGQER-----------FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKC 119 (211)
T ss_pred EEEEEEEeCCcchh-----------HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcc
Confidence 03488999999753 45556677899999999999986322222234444333 2345688999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.....+.......+.. . ...+.+.+||++|.++
T Consensus 120 Dl~~~~~v~~~~~~~~~~-----~-~~~~~~e~Sak~g~~v 154 (211)
T cd04111 120 DLESQRQVTREEAEKLAK-----D-LGMKYIETSARTGDNV 154 (211)
T ss_pred ccccccccCHHHHHHHHH-----H-hCCEEEEEeCCCCCCH
Confidence 997532221111111111 1 1146788999999988
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=150.75 Aligned_cols=152 Identities=17% Similarity=0.262 Sum_probs=101.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...|.|+|+|+.|+|||||+++|.+..+.. ...++.|.+... .+.+. +. .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~----------------~~------------~ 292 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFE----------------YK------------D 292 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEE----------------ec------------C
Confidence 466899999999999999999999876532 112222322110 00000 00 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
.. ..++||||||+.. |.......+..+|++++|+|+.+ +...+..+.+..+...+.|+++|+||+|
T Consensus 293 ~~--~kItfiDTPGhe~-----------F~~mr~rg~~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~~~iPiIVViNKiD 358 (742)
T CHL00189 293 EN--QKIVFLDTPGHEA-----------FSSMRSRGANVTDIAILIIAADD-GVKPQTIEAINYIQAANVPIIVAINKID 358 (742)
T ss_pred Cc--eEEEEEECCcHHH-----------HHHHHHHHHHHCCEEEEEEECcC-CCChhhHHHHHHHHhcCceEEEEEECCC
Confidence 00 4589999999854 66667778899999999999986 6777777777778778899999999999
Q ss_pred CCCHH--HHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 213 MVDHQ--QLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~--~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
+.... .+.+.+. ..+.+.. ....+++++||++|.|+
T Consensus 359 l~~~~~e~v~~eL~----~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 359 KANANTERIKQQLA----KYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred ccccCHHHHHHHHH----HhccchHhhCCCceEEEEECCCCCCH
Confidence 97532 2211111 1111111 11357899999999988
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=144.96 Aligned_cols=172 Identities=18% Similarity=0.170 Sum_probs=96.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCC----------CCCccceEEEEEeCCCccccCCCCcccccccccccccc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIG----------PEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNR 125 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~----------~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~ 125 (551)
...|+++|++|+|||||+|+|+...-...... .+..+..+..++....+....|...+. .
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~----------~ 75 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDL----------A 75 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCcccee----------e
Confidence 46799999999999999999997653321110 000111111111111111111211110 0
Q ss_pred eeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC-CCChHHHHHHHHHhCCCC-c
Q psy11743 126 FQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFRRSIEALRGHDD-K 203 (551)
Q Consensus 126 ~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~-~~~~~~~~~l~~l~~~~~-~ 203 (551)
+..+.. .. ..+.+|||||+.+ |...+...+..+|++++|+|+.+. +...+..+.+..+...+. +
T Consensus 76 ~~~~~~-~~--~~i~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~ 141 (425)
T PRK12317 76 HKKFET-DK--YYFTIVDCPGHRD-----------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQ 141 (425)
T ss_pred eEEEec-CC--eEEEEEECCCccc-----------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCe
Confidence 000000 01 4689999999754 444455557899999999999841 455555566666655554 5
Q ss_pred EEEEEcCCCCCCH-HH-HH---HHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 204 IRIVLNKADMVDH-QQ-LM---RVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 204 vilVlNK~Dl~~~-~~-~~---~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+++|+||+|+... ++ .. +.+...+...+. .....+++++||++|.|+.
T Consensus 142 iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~--~~~~~~ii~iSA~~g~gi~ 194 (425)
T PRK12317 142 LIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGY--KPDDIPFIPVSAFEGDNVV 194 (425)
T ss_pred EEEEEEccccccccHHHHHHHHHHHHHHHHhhCC--CcCcceEEEeecccCCCcc
Confidence 8999999999752 11 11 122222222222 1123578999999999983
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=132.32 Aligned_cols=145 Identities=22% Similarity=0.257 Sum_probs=87.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|||||||++++++..+. ....||...+....+. +. |.. .
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~---~~y~pTi~d~~~k~~~-----i~----------~~~---------------~ 48 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE---EQYTPTIEDFHRKLYS-----IR----------GEV---------------Y 48 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC---CCCCCChhHhEEEEEE-----EC----------CEE---------------E
Confidence 6999999999999999999987753 2223343211110000 00 000 2
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------------CCCcEE
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------------HDDKIR 205 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------------~~~~vi 205 (551)
.+.||||+|... +......++..+|++|+|+|..+.........+.+.+.. .+.|++
T Consensus 49 ~l~I~Dt~G~~~-----------~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI 117 (247)
T cd04143 49 QLDILDTSGNHP-----------FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMV 117 (247)
T ss_pred EEEEEECCCChh-----------hhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEE
Confidence 478999999754 333344467899999999999862222222344444421 368999
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+....++ .+...... +. ....+.+.+||++|.|+
T Consensus 118 ivgNK~Dl~~~~~v~~~ei~~~~---~~---~~~~~~~evSAktg~gI 159 (247)
T cd04143 118 ICGNKADRDFPREVQRDEVEQLV---GG---DENCAYFEVSAKKNSNL 159 (247)
T ss_pred EEEECccchhccccCHHHHHHHH---Hh---cCCCEEEEEeCCCCCCH
Confidence 99999999742221 11111111 11 12346788999999888
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=127.92 Aligned_cols=146 Identities=16% Similarity=0.219 Sum_probs=85.3
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|+|+|.+|||||||++++++..+.. ...+|. +... .+..+ +. .
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------------------------------~~-~ 45 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE---DYVPTVFENYSADVEVD-------------------------------GK-P 45 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC---CCCCcEEeeeeEEEEEC-------------------------------CE-E
Confidence 5899999999999999999987632 112221 1111 01000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
..+.++||||... +.......+..+|++++|+|.++....... ..++..+.. .+.|+++|.||+|+
T Consensus 46 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 46 VELGLWDTAGQED-----------YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred EEEEEEECCCCcc-----------cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhh
Confidence 2488999999764 233344567899999999999852111111 234555543 37899999999999
Q ss_pred CCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.....+.+. .....+.. .....+.+.+||++|.|+
T Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 115 REDKSTLRELSKQKQEPVTYEQGEALAK--RIGAVKYLECSALTQEGV 160 (174)
T ss_pred hhChhhhhhhhcccCCCccHHHHHHHHH--HcCCcEEEEecCCCCCCH
Confidence 75322110000 00000111 111225678999999988
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.9e-14 Score=125.38 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=107.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+++.++|.+|||||.|+-+++.+.+..+ ++....+.++.....+++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~-------hd~TiGvefg~r~~~id~k~----------------------- 54 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPV-------HDLTIGVEFGARMVTIDGKQ----------------------- 54 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccc-------ccceeeeeeceeEEEEcCce-----------------------
Confidence 457899999999999999999999987433 33345555555444444322
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVlNK~ 211 (551)
-++.+|||+|+.. |.+.++.+.+.+..+|+|+|..+.........|+..++++ +.-++++.||+
T Consensus 55 --IKlqiwDtaGqe~-----------frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKs 121 (216)
T KOG0098|consen 55 --IKLQIWDTAGQES-----------FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKS 121 (216)
T ss_pred --EEEEEEecCCcHH-----------HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchh
Confidence 2489999999976 8899999999999999999998644444445667666654 45688999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+...+++.+.-...|.+.. ......+||+++.++
T Consensus 122 DL~~rR~Vs~EEGeaFA~eh------gLifmETSakt~~~V 156 (216)
T KOG0098|consen 122 DLEARREVSKEEGEAFAREH------GLIFMETSAKTAENV 156 (216)
T ss_pred hhhccccccHHHHHHHHHHc------CceeehhhhhhhhhH
Confidence 99877666544444443221 123346899999888
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-13 Score=126.66 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=75.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|+|||||+|+|+|..... .+..++ ... .... . ...|. .+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~--~~~~~~-~~~-~~t~-------~------~~~~~-------------~~~~ 51 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE--EGAAPT-GVV-ETTM-------K------RTPYP-------------HPKF 51 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC--CCcccc-Ccc-cccc-------C------ceeee-------------cCCC
Confidence 579999999999999999999965421 011011 100 0000 0 00000 0001
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+.... ..++.+ ...+..+|++++|.|. .++..+..+++.+.+.++|+++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~----~~~~l~--~~~~~~~d~~l~v~~~---~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFP----PDDYLE--EMKFSEYDFFIIISST---RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCC----HHHHHH--HhCccCcCEEEEEeCC---CCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 45899999999863211 011211 1225678999998553 4678888889988888899999999999964
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=132.36 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=68.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC------CCChHHHHHHHHHhCCC-CcEEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL------DISDEFRRSIEALRGHD-DKIRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~------~~~~~~~~~l~~l~~~~-~~vilVlN 209 (551)
..+.+|||||+.+ +...+...+..+|++++|+|+... +...+..+.+..+...+ +|+++|+|
T Consensus 77 ~~i~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvN 145 (219)
T cd01883 77 YRFTILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVN 145 (219)
T ss_pred eEEEEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEE
Confidence 4689999999743 455566677899999999999852 23334444444444444 67889999
Q ss_pred CCCCCC----HHHHHHH---HHHHHHHcccccCCCCceEEEecccCCCCCcc
Q psy11743 210 KADMVD----HQQLMRV---YGALMWSLGKVLQTPEVARVYIGSFWDQPLVH 254 (551)
Q Consensus 210 K~Dl~~----~~~~~~~---~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~ 254 (551)
|+|+.. .....+. +...+...+. .....+++++||++|.|+..
T Consensus 146 K~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 146 KMDDVTVNWSEERYDEIKKELSPFLKKVGY--NPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCC--CcCCceEEEeecCcCCCCCc
Confidence 999983 2222222 2222222222 22246799999999999853
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=142.90 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=71.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
.++++|||||+.+ |...+...+..+|++++|+|+.. +...++.+.+..+...+.| +++|+||+|+++
T Consensus 124 ~~i~~iDtPGh~~-----------f~~~~~~g~~~aD~allVVda~~-g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 124 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred eEEEEEECCCccc-----------hHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 4689999999864 66666677788999999999986 7888888999999888999 578899999987
Q ss_pred HHHHHHHHHHHHHHc-cccc-CCCCceEEEecccCC
Q psy11743 216 HQQLMRVYGALMWSL-GKVL-QTPEVARVYIGSFWD 249 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l-~~l~-~~~~~~~v~iSa~~g 249 (551)
.++..+.+...+..+ ..+. .....|++++|++.+
T Consensus 192 ~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa 227 (447)
T PLN03127 192 DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSA 227 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcceEEEecccee
Confidence 544433332222111 1110 112467888888643
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.4e-14 Score=143.48 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=104.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..+.+++++|+||||||||+|+|++++ .+.|++.||||| ..++..+|.++.++||+|++. ....+++.|.
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d--~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe---t~d~VE~iGI-- 287 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRD--RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE---TDDVVERIGI-- 287 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCC--ceEecCCCCCccceEEEEEEECCEEEEEEecCCccc---CccHHHHHHH--
Confidence 357899999999999999999999999 699999999999 344677999999999999995 5578999998
Q ss_pred HhhhhhhccccCccc-------cccccc--------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 381 LNRFQCSLVNSPVLK-------GKVLQT--------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
.|+..++..+|..+ +.+.+| ...+.++|.||.|+.-+.. ...+ .+.
T Consensus 288 -eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~----------------~~~~--~~~ 348 (454)
T COG0486 288 -ERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIE----------------LESE--KLA 348 (454)
T ss_pred -HHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccc----------------cchh--hcc
Confidence 89999999998642 112222 2345589999999932211 0011 122
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
...+.+.+ ++|.+ +.|.+++...+..
T Consensus 349 ~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 349 NGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred CCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence 22233333 77777 8888888776643
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-13 Score=127.15 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=92.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|..|||||||++++.+..+.. ...+.++.+-. ..+..+. .
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~-----------------~------------- 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTES-PYGYNMGIDYKTTTILLDG-----------------R------------- 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcceeEEEEEEEEECC-----------------E-------------
Confidence 45789999999999999999999865421 11111111110 0111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++|+|+|.++.........|+..+.+ .+.|+++|.||+
T Consensus 54 --~~~l~iwDt~G~~~-----------~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~ 120 (189)
T cd04121 54 --RVKLQLWDTSGQGR-----------FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRL 120 (189)
T ss_pred --EEEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 03488999999864 555666778999999999999863333333456665543 368999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.....+. +........ ...+.+.+||++|.|+
T Consensus 121 DL~~~~~v~~~~~~~~a~~-------~~~~~~e~SAk~g~~V 155 (189)
T cd04121 121 HLAFKRQVATEQAQAYAER-------NGMTFFEVSPLCNFNI 155 (189)
T ss_pred cchhccCCCHHHHHHHHHH-------cCCEEEEecCCCCCCH
Confidence 996432211 111111111 1235788999999988
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=126.18 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=87.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||++++....+. . ..||......... + .+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~--~~~T~~~~~~~~~-----------------~-----~~---------- 60 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--T--TIPTIGFNVETVE-----------------Y-----KN---------- 60 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--c--cCCccccceEEEE-----------------E-----CC----------
Confidence 478999999999999999999766542 1 2233221111000 0 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHhC---CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~---~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++|+|+|+++........ .+...+.. ...|+++|+||+
T Consensus 61 -~~~~l~D~~G~~~-----------~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~ 128 (182)
T PTZ00133 61 -LKFTMWDVGGQDK-----------LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQ 128 (182)
T ss_pred -EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCC
Confidence 3489999999854 4556677889999999999998522112222 23333332 357899999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+ ... .++.- ......+++.+||++|.|+
T Consensus 129 Dl~~~~~~~~-i~~---~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 129 DLPNAMSTTE-VTE---KLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred CCCCCCCHHH-HHH---HhCCCcccCCcEEEEeeeCCCCCCH
Confidence 9864211111 111 12220 0111124556899999998
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=123.95 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=102.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..+.+|+++|..||||||||+++.-..+ ....++| +.+..-.....+.|.+
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~f---d~~YqAT----IGiDFlskt~~l~d~~---------------------- 70 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKF---DNTYQAT----IGIDFLSKTMYLEDRT---------------------- 70 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhh---cccccce----eeeEEEEEEEEEcCcE----------------------
Confidence 3458999999999999999999998765 2333333 2222111111111111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC----CCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH----DDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----~~~vilVlN 209 (551)
-.+.+|||+|.+. |...+..++++++++|+|+|.++.........|++.+++. +.-+++|.|
T Consensus 71 ---vrLQlWDTAGQER-----------FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGn 136 (221)
T KOG0094|consen 71 ---VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGN 136 (221)
T ss_pred ---EEEEEEecccHHH-----------HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcc
Confidence 3489999999875 7888899999999999999999755555557788777643 234778999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.||.+++++...-.... .. .-.+..+.+||+.|.++
T Consensus 137 KtDL~dkrqvs~eEg~~k---Ak---el~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 137 KTDLSDKRQVSIEEGERK---AK---ELNAEFIETSAKAGENV 173 (221)
T ss_pred cccccchhhhhHHHHHHH---HH---HhCcEEEEecccCCCCH
Confidence 999999876544322211 11 11235567899999998
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=125.32 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|++|+|||||+++|.+...... .+|... ...+... +
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~----~~t~g~~~~~i~~~-----------------------~-------- 57 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI----TPTQGFNIKTVQSD-----------------------G-------- 57 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc----CCCCCcceEEEEEC-----------------------C--------
Confidence 368899999999999999999999764211 122110 0011000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH-HHHh---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI-EALR---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l-~~l~---~~~~~vilVlN 209 (551)
..+.++||||... +......+++.+|++++|+|+.+..........+ ..+. ..+.|+++++|
T Consensus 58 ---~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 123 (173)
T cd04155 58 ---FKLNVWDIGGQRA-----------IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFAN 123 (173)
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 3488999999753 4445566778999999999998521111112222 2222 34689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+. ...+ .+..+ .....+++.+||++|.|+
T Consensus 124 K~D~~~~~~~~~i-~~~l-~~~~~-~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 124 KQDLATAAPAEEI-AEAL-NLHDL-RDRTWHIQACSAKTGEGL 163 (173)
T ss_pred CCCCccCCCHHHH-HHHc-CCccc-CCCeEEEEEeECCCCCCH
Confidence 9999764322221 1111 11111 112235678999999988
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=127.12 Aligned_cols=146 Identities=16% Similarity=0.092 Sum_probs=86.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
-.+|+++|.+|||||||++++++..+. .....||.. .+. .+.... .
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~--~~~~~~T~~~~~~~~~~~~~~-----------------~------------ 52 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS--LNAYSPTIKPRYAVNTVEVYG-----------------Q------------ 52 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC--cccCCCccCcceEEEEEEECC-----------------e------------
Confidence 468999999999999999999998763 122233332 111 111110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-CCCCcEEEEEcCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-GHDDKIRIVLNKA 211 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~~~~~vilVlNK~ 211 (551)
...+.++||+|... +......++.++|++++|+|+++.........++..+. ..+.|+++|+||+
T Consensus 53 ---~~~l~~~d~~g~~~-----------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~ 118 (169)
T cd01892 53 ---EKYLILREVGEDEV-----------AILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKA 118 (169)
T ss_pred ---EEEEEEEecCCccc-----------ccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcc
Confidence 02478899998754 22233445689999999999975211111123444332 2368999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..... .........++ . ...+.+||+++.++
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~~----~--~~~~~~Sa~~~~~v 154 (169)
T cd01892 119 DLDEQQQRYEVQPDEFCRKLG----L--PPPLHFSSKLGDSS 154 (169)
T ss_pred cccccccccccCHHHHHHHcC----C--CCCEEEEeccCccH
Confidence 996533210 00111111122 1 12367999999887
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=129.04 Aligned_cols=146 Identities=21% Similarity=0.225 Sum_probs=86.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|||||||+++|++..+. ....+|...+....+. ++.. -.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~---~~~~~t~~~~~~~~~~----------------~~~~--------------~~ 47 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE---PKYRRTVEEMHRKEYE----------------VGGV--------------SL 47 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC---ccCCCchhhheeEEEE----------------ECCE--------------EE
Confidence 4899999999999999999988752 1122232211110000 0000 02
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKADM 213 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~Dl 213 (551)
.+.++||||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+||+|+
T Consensus 48 ~l~i~D~~G~~~-----------~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 48 TLDILDTSGSYS-----------FPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EEEEEECCCchh-----------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 478999999764 34445567789999999999985211122223333322 357899999999999
Q ss_pred CCH-HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDH-QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~-~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
... ..+........... ....+++.+||++|.|+
T Consensus 117 ~~~~~~v~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 151 (198)
T cd04147 117 LEEERQVPAKDALSTVEL-----DWNCGFVETSAKDNENV 151 (198)
T ss_pred ccccccccHHHHHHHHHh-----hcCCcEEEecCCCCCCH
Confidence 753 21111000001000 11235778999999998
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=124.39 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=88.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|+|||||++++++..+. ..+.||......... +.+++ ...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~~~----------------------------~~~~~-~~~ 49 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH---SSHISTIGVDFKMKT----------------------------IEVDG-IKV 49 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEE----------------------------EEECC-EEE
Confidence 6999999999999999999988763 222333221110000 00000 002
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~Dl~ 214 (551)
.+.++||||... +......+...+|++++|+|..+.........++..+.. .+.|+++|.||+|+.
T Consensus 50 ~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 50 RIQIWDTAGQER-----------YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEEeCCCcHh-----------HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 478999999653 444556677899999999999853222222344444332 357899999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....+.......+.. .. + .+.+.+||++|.++
T Consensus 119 ~~~~v~~~~~~~~~~-~~--~---~~~~e~Sa~~~~~v 150 (161)
T cd04117 119 QKRQVGDEQGNKLAK-EY--G---MDFFETSACTNSNI 150 (161)
T ss_pred cccCCCHHHHHHHHH-Hc--C---CEEEEEeCCCCCCH
Confidence 543221111111111 11 1 35688999999887
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=134.40 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=95.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|++|+|||||+|+|+...-.. ...+...+..+...+... ....|..++. ......|.+ .
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~--~~~g~v~~~~~~~D~~~~-E~~rgiti~~--~~~~~~~~~-----------~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRI--HKIGEVHGGGATMDFMEQ-ERERGITIQS--AATTCFWKD-----------H 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCC--cccccccCCccccCCCcc-ccCCCcCeec--cEEEEEECC-----------E
Confidence 38999999999999999998643110 011111111111111110 0011111100 000001111 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
++.+|||||+.+ +...+..++..+|++++|+|+.. +...+...++..+...++|+++++||+|+....
T Consensus 65 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~ 132 (270)
T cd01886 65 RINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVA-GVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD 132 (270)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 689999999864 56677888999999999999996 778888888888888899999999999997421
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
..+........++. .+.+..+++|+..+
T Consensus 133 -~~~~~~~l~~~l~~---~~~~~~~Pisa~~~ 160 (270)
T cd01886 133 -FFRVVEQIREKLGA---NPVPLQLPIGEEDD 160 (270)
T ss_pred -HHHHHHHHHHHhCC---CceEEEeccccCCC
Confidence 11112222222332 24455678888543
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-13 Score=126.16 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=85.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||++++++..+. ....+|... +..- .+.+++.
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~---~~~~~t~~~~~~~~-----------------------------~~~~~~~- 49 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFP---ERTEATIGVDFRER-----------------------------TVEIDGE- 49 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---CccccceeEEEEEE-----------------------------EEEECCe-
Confidence 57999999999999999999987652 112222110 0000 0000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchH-HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFT-GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~-~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
...+.++||||... +. .....++.++|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 50 ~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 50 RIKVQLWDTAGQER-----------FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred EEEEEEEeCCChHH-----------HHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 03488999999753 33 2455667899999999999863222233445544432 35899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
+|+....++.......+.. ....+.+.+||+++.
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~ 152 (170)
T cd04115 119 CDLREQIQVPTDLAQRFAD------AHSMPLFETSAKDPS 152 (170)
T ss_pred ccchhhcCCCHHHHHHHHH------HcCCcEEEEeccCCc
Confidence 9986543221111111111 112356789999843
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=125.13 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=87.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|..|||||||++++++..+. ....||..... .+..+. .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~---~~~~~T~g~~~~~~~i~~~~-----------------~------------- 47 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD---EDYIQTLGVNFMEKTISIRG-----------------T------------- 47 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEEECC-----------------E-------------
Confidence 36999999999999999999988753 22333432111 111110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.+|||+|... +......++..+|++++|+|+++.........++..+.+ ...| ++|+||
T Consensus 48 --~~~l~iwDt~G~~~-----------~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 48 --EITFSIWDLGGQRE-----------FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred --EEEEEEEeCCCchh-----------HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 03488999999764 444555678999999999999863222222345555543 2344 789999
Q ss_pred CCCCCH---HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDH---QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~---~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+... ++... .......+.. .. ..+.+.+||++|.|+
T Consensus 114 ~Dl~~~~~~~~~~~-~~~~~~~~a~--~~-~~~~~e~SAk~g~~v 154 (182)
T cd04128 114 YDLFADLPPEEQEE-ITKQARKYAK--AM-KAPLIFCSTSHSINV 154 (182)
T ss_pred hhccccccchhhhh-hHHHHHHHHH--Hc-CCEEEEEeCCCCCCH
Confidence 999631 11100 1111111111 11 246789999999988
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=130.17 Aligned_cols=146 Identities=15% Similarity=0.210 Sum_probs=88.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+|+|.+|+|||||+|+|++..+.... .+....+... .+... +. +
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~~-----------------~~-------------~ 54 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITID-----------------NK-------------P 54 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEEC-----------------CE-------------E
Confidence 478999999999999999999988753211 1111111100 00000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ....|+++|+||+
T Consensus 55 --i~l~l~Dt~G~~~-----------~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~ 121 (210)
T PLN03108 55 --IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121 (210)
T ss_pred --EEEEEEeCCCcHH-----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 2378999999753 44455667789999999999986322222234444333 2368999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....... +......... ..+.+.+||+++.++
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 122 DLAHRRAVSTEEGEQFAKEH-------GLIFMEASAKTAQNV 156 (210)
T ss_pred cCccccCCCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 997532211 1111111111 236788999999988
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=119.78 Aligned_cols=131 Identities=23% Similarity=0.238 Sum_probs=86.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|++||+.++|||||+++|.|.+... .-| ..+.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-----~KT----q~i~~~------------------------------------ 37 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-----KKT----QAIEYY------------------------------------ 37 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-----Ccc----ceeEec------------------------------------
Confidence 69999999999999999999987421 011 111111
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC-CH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV-DH 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~-~~ 216 (551)
=.+|||||-.-... .+...+......||+|++|.|+.. +.......+... ..+|+|-|+||+|+. ++
T Consensus 38 -~~~IDTPGEyiE~~-------~~y~aLi~ta~dad~V~ll~dat~-~~~~~pP~fa~~---f~~pvIGVITK~Dl~~~~ 105 (143)
T PF10662_consen 38 -DNTIDTPGEYIENP-------RFYHALIVTAQDADVVLLLQDATE-PRSVFPPGFASM---FNKPVIGVITKIDLPSDD 105 (143)
T ss_pred -ccEEECChhheeCH-------HHHHHHHHHHhhCCEEEEEecCCC-CCccCCchhhcc---cCCCEEEEEECccCccch
Confidence 13599999543111 266777777889999999999996 322222233433 358999999999999 33
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++.+. ...+...|. ..++.+|+.+|.|+
T Consensus 106 ~~i~~a-~~~L~~aG~------~~if~vS~~~~eGi 134 (143)
T PF10662_consen 106 ANIERA-KKWLKNAGV------KEIFEVSAVTGEGI 134 (143)
T ss_pred hhHHHH-HHHHHHcCC------CCeEEEECCCCcCH
Confidence 343332 223322222 24588999999998
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-13 Score=125.08 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=86.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|+|||||+++|++..+. ....||.. .+. .+... +.-
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~---~~~~~t~~~~~~~~i~~~-------------------------------~~~ 47 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP---EEYVPTVFENYVTNIQGP-------------------------------NGK 47 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC---CCCCCeeeeeeEEEEEec-------------------------------CCc
Confidence 7999999999999999999998753 12222221 111 11110 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHh--CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALR--GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~--~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|.++ ..+.+. ..++..+. ..+.|+++|+||+
T Consensus 48 ~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 115 (187)
T cd04132 48 IIELALWDTAGQEE-----------YDRLRPLSYPDVDVLLICYAVDN-PTSLDNVEDKWFPEVNHFCPGTPIMLVGLKT 115 (187)
T ss_pred EEEEEEEECCCchh-----------HHHHHHHhCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEeCh
Confidence 02488999999753 44445556789999999999985 222222 12443333 2468999999999
Q ss_pred CCCCHHH----HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQ----LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~----~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+... +.......+. . .....+.+.+||++|.++
T Consensus 116 Dl~~~~~~~~~v~~~~~~~~~-~----~~~~~~~~e~Sa~~~~~v 155 (187)
T cd04132 116 DLRKDKNLDRKVTPAQAESVA-K----KQGAFAYLECSAKTMENV 155 (187)
T ss_pred hhhhCccccCCcCHHHHHHHH-H----HcCCcEEEEccCCCCCCH
Confidence 9865321 0000111111 1 111225688999999988
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=137.98 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=97.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|+.++|||||+++|++... ..+. .+.+...++....+..-.|...+ ...+..+.+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~--~~~~~~~~~d~~~~E~~rG~Ti~------------~~~~~~~~~ 73 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLA---KEGG--AAARAYDQIDNAPEEKARGITIN------------TAHVEYETE 73 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHH---Hhhc--ccccccccccCCHHHHhcCccee------------eEEEEEcCC
Confidence 457899999999999999999986411 0000 00000000000000000111111 000001000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~Dl 213 (551)
-..+.+|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+.|.+ +|+||+|+
T Consensus 74 -~~~~~liDtpGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 74 -NRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSATD-GPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred -CEEEEEEECCchHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 14589999999864 56666677789999999999996 777888888888887888866 68999999
Q ss_pred CCHHHHHHHH----HHHHHHcccccCCCCceEEEecccCCC
Q psy11743 214 VDHQQLMRVY----GALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 214 ~~~~~~~~~~----~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
.+.++..+.. ...+...+. .....+++++||+++.
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 141 VDDEELLELVEMEVRELLSEYDF--PGDDTPIIRGSALKAL 179 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC--CccCccEEECcccccc
Confidence 8755433222 222222222 1122688999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-13 Score=129.38 Aligned_cols=147 Identities=20% Similarity=0.159 Sum_probs=90.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+++|..|||||||+++++...+. ....||.... ...... .+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~---~~~~~tig~~~~~~~~~-----------------------------~~ 58 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFF-----------------------------TN 58 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCC---CccCCccceeEEEEEEE-----------------------------EC
Confidence 56689999999999999999999877642 2222332211 100000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh--CCCCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR--GHDDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~~vilVlNK 210 (551)
.. ...+.+|||||... +......+...+|++|+|+|.++.........|+..+. ..+.|+++|+||
T Consensus 59 ~~-~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK 126 (219)
T PLN03071 59 CG-KIRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (219)
T ss_pred Ce-EEEEEEEECCCchh-----------hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 00 03488999999864 34444556789999999999986222222234555444 246899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+.. . +.. ....+.+.+||++|.|+
T Consensus 127 ~Dl~~~~v~~~~~-~-~~~------~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 127 VDVKNRQVKAKQV-T-FHR------KKNLQYYEISAKSNYNF 160 (219)
T ss_pred hhhhhccCCHHHH-H-HHH------hcCCEEEEcCCCCCCCH
Confidence 9986421111111 1 111 11235678999999988
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-13 Score=131.23 Aligned_cols=150 Identities=18% Similarity=0.134 Sum_probs=103.4
Q ss_pred HHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEe
Q psy11743 167 WFAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 167 ~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~i 244 (551)
..+.+.|-+++|+.+..++++... .+++-.+...+...++|+||+|+++.++... .+......+ ..+++++
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~-------gy~v~~~ 147 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI-------GYPVLFV 147 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhC-------CeeEEEe
Confidence 344568888888888876776654 4555566677899999999999998765442 223333223 3478899
Q ss_pred cccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHH
Q psy11743 245 GSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIR 324 (551)
Q Consensus 245 Sa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n 324 (551)
|++++.++ ++|...+ .+-+.+++|++|||||||+|
T Consensus 148 s~~~~~~~-------------~~l~~~l--------------------------------~~~~svl~GqSGVGKSSLiN 182 (301)
T COG1162 148 SAKNGDGL-------------EELAELL--------------------------------AGKITVLLGQSGVGKSTLIN 182 (301)
T ss_pred cCcCcccH-------------HHHHHHh--------------------------------cCCeEEEECCCCCcHHHHHH
Confidence 99887776 3443333 23478999999999999999
Q ss_pred HHHhCC-CCcccccCC----CcccceEEEEecCCCccccCCceeecCCC
Q psy11743 325 YLLERD-FPGIHIGPE----PTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 325 ~l~~~~-~~~~~v~~~----~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
+|.+.. ..--.||.. -.||++.....-+....++||||+...+.
T Consensus 183 ~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l 231 (301)
T COG1162 183 ALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGL 231 (301)
T ss_pred hhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCc
Confidence 999863 111122222 34666666555567788999999998775
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=126.55 Aligned_cols=144 Identities=18% Similarity=0.196 Sum_probs=86.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||+++|++..+. ....||+. .++....- .+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~---~~~~~t~~~~~~~~~~~----------------~~~~-------------- 48 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV---ESYYPTIENTFSKIIRY----------------KGQD-------------- 48 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc---cccCcchhhhEEEEEEE----------------CCEE--------------
Confidence 47999999999999999999987752 22222321 11111000 0000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK~ 211 (551)
..+.+|||||..+ +......+...+|++++|+|..+.........+...+ ...+.|+++|+||+
T Consensus 49 -~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 116 (180)
T cd04137 49 -YHLEIVDTAGQDE-----------YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKS 116 (180)
T ss_pred -EEEEEEECCChHh-----------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEch
Confidence 2378999999764 3444556778999999999998522111222332322 23467999999999
Q ss_pred CCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+...+.... ........ ...+++.+||+++.++
T Consensus 117 Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gv 151 (180)
T cd04137 117 DLHTQRQVSTEEGKELAES-------WGAAFLESSARENENV 151 (180)
T ss_pred hhhhcCccCHHHHHHHHHH-------cCCeEEEEeCCCCCCH
Confidence 9874322111 11111111 1236788999998887
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.2e-13 Score=128.03 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=57.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+||+|+.
T Consensus 73 ~~i~iiDTPG~~~-----------f~~~~~~~l~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 73 YLINLIDSPGHVD-----------FSSEVTAALRLCDGALVVVDAVE-GVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred eEEEEECCCCccc-----------cHHHHHHHHHhcCeeEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 4588999999975 67788888999999999999996 788888788887777788999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=126.83 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=89.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||++++++..+. ....||......... ..+.. +
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~---~~~~pt~~~~~~~~~----------------~~~~~------------~-- 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP---SEYVPTVFDNYAVTV----------------MIGGE------------P-- 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeeEEEE----------------EECCE------------E--
Confidence 47999999999999999999987752 223344321111000 00000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhC--CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRG--HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~--~~~~vilVlNK~D 212 (551)
..+.+|||||... +......++..+|++++|+|..+ .-+... . .|+..+.. .+.|+++|.||+|
T Consensus 49 ~~l~i~Dt~G~~~-----------~~~~~~~~~~~a~~~ilv~d~~~-~~s~~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (175)
T cd01874 49 YTLGLFDTAGQED-----------YDRLRPLSYPQTDVFLVCFSVVS-PSSFENVKEKWVPEITHHCPKTPFLLVGTQID 116 (175)
T ss_pred EEEEEEECCCccc-----------hhhhhhhhcccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHh
Confidence 2478999999864 33344456789999999999986 222222 2 35555543 3689999999999
Q ss_pred CCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+....+..+.... ....+.. .....+.+.+||++|.|+
T Consensus 117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~--~~~~~~~~e~SA~tg~~v 163 (175)
T cd01874 117 LRDDPSTIEKLAKNKQKPITPETGEKLAR--DLKAVKYVECSALTQKGL 163 (175)
T ss_pred hhhChhhHHHhhhccCCCcCHHHHHHHHH--HhCCcEEEEecCCCCCCH
Confidence 8654322111100 0000000 112246788999999998
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=125.64 Aligned_cols=143 Identities=21% Similarity=0.257 Sum_probs=83.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|||||||++++++..+.. ...+|+ .... .+..+. .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~----------------~---------------- 45 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIG---EYDPNLESLYSRQVTIDG----------------E---------------- 45 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccc---ccCCChHHhceEEEEECC----------------E----------------
Confidence 48999999999999999999866421 112222 1111 110000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcEEEEEcC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKIRIVLNK 210 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~vilVlNK 210 (551)
...+.+|||||.... .......++..+|++++|+|+.+.........+...+. ..+.|+++|+||
T Consensus 46 ~~~~~i~D~~g~~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 46 QVSLEILDTAGQQQA----------DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEEEECCCCccc----------ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 024789999998741 12234456789999999999986222222233444333 236899999999
Q ss_pred CCCCCHHHHHHH-HHHHHHHcccccCCCCceEEEecccCCC-CC
Q psy11743 211 ADMVDHQQLMRV-YGALMWSLGKVLQTPEVARVYIGSFWDQ-PL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~-~~~~~~~l~~l~~~~~~~~v~iSa~~g~-~~ 252 (551)
+|+.....+... ........ + .+.+.+||++|. ++
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~----~---~~~~e~Sa~~~~~~v 152 (165)
T cd04146 116 ADLLHYRQVSTEEGEKLASEL----G---CLFFEVSAAEDYDGV 152 (165)
T ss_pred CchHHhCccCHHHHHHHHHHc----C---CEEEEeCCCCCchhH
Confidence 998543221111 11111111 1 356789999884 66
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=140.66 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=73.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~Dl~~ 215 (551)
.++.+|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+.|.+ +|+||+|+.+
T Consensus 75 ~~i~~iDtPGh~~-----------f~~~~~~~~~~aD~~llVvda~~-g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 75 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred cEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 4689999999842 66777788899999999999986 677777788888887888866 5799999986
Q ss_pred HHHHHHHH----HHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVY----GALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~----~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++..+.. ...+...+. .....+++++||++|.+.
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~--~~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDF--PGDDTPIIRGSALKALEG 181 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCC--CcCceeEEecchhccccC
Confidence 44332222 222222222 112367899999988764
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-13 Score=129.33 Aligned_cols=143 Identities=14% Similarity=0.189 Sum_probs=84.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc--ceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT--DRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt--~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||++++++..+.. ....+|. +.. ..+... +. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~--~~~~~t~~~~~~~~~i~~~-----------------~~----~-------- 49 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD--HAYDASGDDDTYERTVSVD-----------------GE----E-------- 49 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc--cCcCCCccccceEEEEEEC-----------------CE----E--------
Confidence 379999999999999999998766420 1111121 111 111110 00 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh-ccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE-RVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVL 208 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~-~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVl 208 (551)
..+.+|||||... +. ...+.. .+|++++|+|+.+........+++..+.. .+.|+++|+
T Consensus 50 ---~~l~i~Dt~G~~~-----------~~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 50 ---STLVVIDHWEQEM-----------WT--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred ---EEEEEEeCCCcch-----------HH--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 3488999999861 11 112334 89999999999863222222445555443 368999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.....+.......+ ... ...+.+.+||.++.|+
T Consensus 114 NK~Dl~~~~~v~~~~~~~~-a~~-----~~~~~~e~SA~~~~gv 151 (221)
T cd04148 114 NKSDLARSREVSVQEGRAC-AVV-----FDCKFIETSAGLQHNV 151 (221)
T ss_pred EChhccccceecHHHHHHH-HHH-----cCCeEEEecCCCCCCH
Confidence 9999975432211111111 111 1235678999999988
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=125.23 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=98.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|..|||||||+-++....+. ....||... +|.....+ +++.
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~---e~~e~TIGa--------------------------aF~tktv~--~~~~ 52 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFH---ENIEPTIGA--------------------------AFLTKTVT--VDDN 52 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccc---ccccccccc--------------------------EEEEEEEE--eCCc
Confidence 3478999999999999999999988863 323344322 11111000 1111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc---EEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK---IRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~---vilVlNK~ 211 (551)
.-++.||||+|... |.....-+.++|+++|+|+|+++.......+.|+..|++..-| +-+|.||+
T Consensus 53 -~ikfeIWDTAGQER-----------y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~ 120 (200)
T KOG0092|consen 53 -TIKFEIWDTAGQER-----------YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKA 120 (200)
T ss_pred -EEEEEEEEcCCccc-----------ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchh
Confidence 14588999999976 4555666779999999999999755555667888888765334 44699999
Q ss_pred CCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....++.. .......+. ....+.+||++|.++
T Consensus 121 DL~~~R~V~~~ea~~yAe~~-------gll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 121 DLLERREVEFEEAQAYAESQ-------GLLFFETSAKTGENV 155 (200)
T ss_pred hhhhcccccHHHHHHHHHhc-------CCEEEEEecccccCH
Confidence 9987443321 112222222 335677999999998
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=143.98 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=83.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcc--ccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG--SVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~--~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+.|.|+++|++|+|||||+|+|.+.... ...++-.|... ...+.+... ...+.... . .+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~i-g~~~~~~~~~~~~~~~~~~--------~--------~~ 65 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHI-GATEVPIDVIEKIAGPLKK--------P--------LP 65 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEee-ceeeccccccccccceecc--------c--------cc
Confidence 5689999999999999999999887642 22222111111 000000000 00000000 0 00
Q ss_pred CCC-ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 133 SPV-LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 133 ~~~-l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+ +..+++|||||+.. |.......+..+|++++|+|+++ +...+..+.+..+...+.|+++|+||+
T Consensus 66 ~~~~~~~i~~iDTPG~e~-----------f~~~~~~~~~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~~vpiIvviNK~ 133 (586)
T PRK04004 66 IKLKIPGLLFIDTPGHEA-----------FTNLRKRGGALADIAILVVDINE-GFQPQTIEAINILKRRKTPFVVAANKI 133 (586)
T ss_pred cccccCCEEEEECCChHH-----------HHHHHHHhHhhCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEEEEECc
Confidence 000 12489999999865 55555567789999999999996 677777777777777889999999999
Q ss_pred CCC
Q psy11743 212 DMV 214 (551)
Q Consensus 212 Dl~ 214 (551)
|+.
T Consensus 134 D~~ 136 (586)
T PRK04004 134 DRI 136 (586)
T ss_pred CCc
Confidence 986
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-13 Score=143.80 Aligned_cols=175 Identities=18% Similarity=0.189 Sum_probs=99.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCC----------CCCCccceEE--EEEeCCCccccCCCCcccccccccc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHI----------GPEPTTDRFI--AVMYDEREGSVPFSPLDKFGKFGNS 121 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~----------~~~~tt~~~~--~i~~~~~~~~i~g~~~~~~~~~g~~ 121 (551)
....+|+++|+.++|||||+++|+...-..... ..+.+.+.+. .++....+..-.|..++.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~------- 97 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV------- 97 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe-------
Confidence 355899999999999999999999875322210 0222222211 111111110011111110
Q ss_pred cccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC
Q psy11743 122 FLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD 201 (551)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 201 (551)
.+. ....+ -.++.||||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+
T Consensus 98 ---~~~--~~~~~-~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~-G~~~qt~~~~~l~~~lg 159 (474)
T PRK05124 98 ---AYR--YFSTE-KRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARK-GVLDQTRRHSFIATLLG 159 (474)
T ss_pred ---eEE--EeccC-CcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCC-CccccchHHHHHHHHhC
Confidence 000 01000 14689999999643 55566666799999999999986 66665555444444434
Q ss_pred -CcEEEEEcCCCCCCH-HHHHHHHHHHHHH-cccccCCCCceEEEecccCCCCCc
Q psy11743 202 -DKIRIVLNKADMVDH-QQLMRVYGALMWS-LGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 202 -~~vilVlNK~Dl~~~-~~~~~~~~~~~~~-l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+++++|+||+|+... ++........+.. +..+......+++++||++|.|+.
T Consensus 160 ~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~ 214 (474)
T PRK05124 160 IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVV 214 (474)
T ss_pred CCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcc
Confidence 468899999999842 2211112222211 111111235688999999999983
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-13 Score=123.95 Aligned_cols=148 Identities=16% Similarity=0.228 Sum_probs=86.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|||||||+++|++..+.. ...||... +. .+..+ +. .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~----~--------- 48 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVFENYVADIEVD-----------------GK----Q--------- 48 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCccccceEEEEEEC-----------------CE----E---------
Confidence 579999999999999999999987531 12223211 11 01000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~ 211 (551)
..+.++||||... +.......+..+|++++|+|..+....... ..+...++. .+.|+++|+||+
T Consensus 49 --~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 115 (175)
T cd01870 49 --VELALWDTAGQED-----------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 115 (175)
T ss_pred --EEEEEEeCCCchh-----------hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence 2478999999854 222222356899999999999852111111 224444443 378999999999
Q ss_pred CCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.... ....+.. .....+++.+||++|.|+
T Consensus 116 Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 163 (175)
T cd01870 116 DLRNDEHTRRELAKMKQEPVKPEEGRDMAN--KIGAFGYMECSAKTKEGV 163 (175)
T ss_pred hcccChhhhhhhhhccCCCccHHHHHHHHH--HcCCcEEEEeccccCcCH
Confidence 98754322111110 0000000 112236789999999988
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=141.28 Aligned_cols=165 Identities=23% Similarity=0.232 Sum_probs=102.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+|+|+.++|||||+++|+...-. .. ..+..+++ ++.......-.|.. .......+.. .. .
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~-~~-~~~~v~~~---~~D~~~~ErerGiT----------I~~~~~~v~~-~~--~ 64 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGT-FR-ANEAVAER---VMDSNDLERERGIT----------ILAKNTAIRY-NG--T 64 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC-Cc-ccccceee---cccCchHHHhCCcc----------EEeeeEEEEE-CC--E
Confidence 6999999999999999999975311 11 11111111 11111100011111 1111000100 01 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH-
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH- 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~- 216 (551)
.+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+||+|+...
T Consensus 65 kinlIDTPGh~D-----------F~~ev~~~l~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 65 KINIVDTPGHAD-----------FGGEVERVLGMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPSAR 132 (594)
T ss_pred EEEEEECCCHHH-----------HHHHHHHHHHhCCEEEEEEeCCC-CCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC
Confidence 699999999865 67778888999999999999986 77788888888888889999999999998642
Q ss_pred -HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 -QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 -~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++.+.....+..++........|++++||+.|.+.
T Consensus 133 ~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~ 169 (594)
T TIGR01394 133 PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWAS 169 (594)
T ss_pred HHHHHHHHHHHHHhhccccccccCcEEechhhcCccc
Confidence 233333333333333211112357899999988754
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-13 Score=141.00 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=102.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+++|+.++|||||+++|++........... .... +....+....|..++. .....+.+
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~----~~~~-~D~~~~Er~rGiTi~~------------~~~~~~~~- 142 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPK----KYDE-IDAAPEERARGITINT------------ATVEYETE- 142 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhcccccc----cccc-ccCChhHHhCCeeEEE------------EEEEEecC-
Confidence 4579999999999999999999754211000000 0000 0000000001111100 00000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
-..+++|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...++| +++++||+|+.
T Consensus 143 ~~~i~liDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~-G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 143 NRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred CcEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 14689999999864 66777788889999999999996 7888888888888888888 77899999998
Q ss_pred CHHHHHHHHH----HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYG----ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~----~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.++..+.+. ..+...++ .....+++++|++++.+.
T Consensus 211 ~~~~~~~~i~~~i~~~l~~~g~--~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 211 DDEELLELVELEVRELLSSYEF--PGDDIPIISGSALLALEA 250 (478)
T ss_pred CHHHHHHHHHHHHHHHHHhcCC--CcCcceEEEEEccccccc
Confidence 7554333222 22222332 223578899999988654
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-14 Score=137.11 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=138.1
Q ss_pred cCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCCCCCchhhhhhhH
Q psy11743 303 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 303 ~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..+...++++|.|||||||+.|.+.|++. ++++.++.|||+.. +..+..+++|.||||+..++.... .+...+
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~--~~l~~s 144 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR--HHLMMS 144 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh--HHHHHH
Confidence 34567999999999999999999999994 89999999998544 455899999999999999885533 333445
Q ss_pred HHhhhhhhccccCccc-------cccccc----------ccceeEEEecccCCCCccchhhhhhhhh-ccChhhHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLK-------GKVLQT----------PEVARVYIGSFWDQPLVHDVNRRLFEDR-SSTSNSVQAYII 441 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~-------~~~~~~----------~~~~~v~~~~~wd~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 441 (551)
++.....|+..+|.+. ....-. ..++.|+|.||.|.+.+....-.+.+.. +..+.....++.
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 6777778888887532 122222 2467799999999842211110000000 000000011111
Q ss_pred HHHHhccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhc
Q psy11743 442 SALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQ 521 (551)
Q Consensus 442 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (551)
+++ ...|-. +..+.+ -.|..|.....+++..++.++.|.+.+-...+-.+ +.++.+..
T Consensus 225 ~~f-~~~p~~--------~~~~~~----~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp----W~y~a~i~----- 282 (379)
T KOG1423|consen 225 EKF-TDVPSD--------EKWRTI----CGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP----WKYPADIV----- 282 (379)
T ss_pred HHh-ccCCcc--------cccccc----cCcccceeEEEEecccccCHHHHHHHHHhcCCCCC----CCCCcccc-----
Confidence 111 111210 000000 01333444556788888888887776544333233 55556666
Q ss_pred cCCCCCCCccchHHHHHHHHHhHhhhh
Q psy11743 522 HHDFTKFQTLRPRLIEVADKMLAEDIA 548 (551)
Q Consensus 522 ~~d~~~~~~~~~~~~~~~~~~~~~~~~ 548 (551)
++-+..+.+.+.+||+|...+.+|+|
T Consensus 283 -T~~s~e~l~~e~VReklLd~~pqEVP 308 (379)
T KOG1423|consen 283 -TEESPEFLCSESVREKLLDHLPQEVP 308 (379)
T ss_pred -cccCHHHHHHHHHHHHHHhhCccccC
Confidence 88888889999999999999999998
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=147.76 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=116.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
..+++++|+|||||||+.|+|.|.+ ..|+++||+| | .....+.++++.++|.||+++-. +.+.-|+.+..|+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~---q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~-~~S~DE~Var~~ll 78 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN---QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT-AYSEDEKVARDFLL 78 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC---ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCC-CCCchHHHHHHHHh
Confidence 4679999999999999999999998 8999999999 2 55577788889999999999987 77888999998887
Q ss_pred hhhhhccccCc--------------ccccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhcc
Q psy11743 383 RFQCSLVNSPV--------------LKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDM 448 (551)
Q Consensus 383 ~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 448 (551)
+ .+.|+ ....++.+.+++.|++.|++|+ ++++.++...+.+.+.|. +
T Consensus 79 ~-----~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~------------A~~~Gi~ID~~~L~~~LG--v 139 (653)
T COG0370 79 E-----GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDE------------AKKRGIRIDIEKLSKLLG--V 139 (653)
T ss_pred c-----CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhh------------HHhcCCcccHHHHHHHhC--C
Confidence 4 22333 2345666678889999999999 556666666777777664 7
Q ss_pred chhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 449 PSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 449 ~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
|++.+ ++|++ +++++++.+.++.
T Consensus 140 PVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 140 PVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred CEEEEEeecCCCHHHHHHHHHHhccc
Confidence 88887 88888 9999999987753
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-13 Score=127.62 Aligned_cols=146 Identities=20% Similarity=0.229 Sum_probs=86.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|.+|||||||+++|++..+.. ...||... .. .+..+ +.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~---~~~~t~~~~~~~~i~~~-----------------~~--------------- 46 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ---VYEPTVFENYVHDIFVD-----------------GL--------------- 46 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccCCcceeeeEEEEEEC-----------------CE---------------
Confidence 68999999999999999999987632 11222211 10 00000 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK~ 211 (551)
-..+.++||||... +......++..+|++++|+|..+. -+.+. ..++..+.. .+.|+++|.||+
T Consensus 47 ~~~l~i~Dt~G~~~-----------~~~l~~~~~~~a~~~ilv~dv~~~-~sf~~~~~~~~~~i~~~~~~~piilvgNK~ 114 (189)
T cd04134 47 HIELSLWDTAGQEE-----------FDRLRSLSYADTDVIMLCFSVDSP-DSLENVESKWLGEIREHCPGVKLVLVALKC 114 (189)
T ss_pred EEEEEEEECCCChh-----------ccccccccccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 03488999999754 222333456899999999999862 22222 235555543 368999999999
Q ss_pred CCCCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+... .....+.. .....+.+.+||++|.|+
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~SAk~~~~v 162 (189)
T cd04134 115 DLREARNERDDLQRYGKHTISYEEGLAVAK--RINALRYLECSAKLNRGV 162 (189)
T ss_pred hhccChhhHHHHhhccCCCCCHHHHHHHHH--HcCCCEEEEccCCcCCCH
Confidence 9976433221100 00000000 112245688999999988
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.3e-13 Score=139.04 Aligned_cols=165 Identities=18% Similarity=0.146 Sum_probs=100.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|+.++|||||+++|++... ..+... .....++....+..-.|...+. . .+....+
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~---~~g~~~--~~~~~~~d~~~~E~~rg~Ti~~----------~--~~~~~~~ 73 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLA---KKGGAE--AKAYDQIDKAPEEKARGITINT----------A--HVEYETE 73 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhh---hccCCc--ccchhhccCChHHHhcCeEEee----------e--EEEEcCC
Confidence 446899999999999999999998421 000000 0000000000000001111100 0 0000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~Dl 213 (551)
-.++.++||||+.+ |...+...+..+|++++|+|+.. +...++.+++..+...+.|.+ +++||+|+
T Consensus 74 -~~~i~~iDtPG~~~-----------f~~~~~~~~~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 74 -KRHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred -CeEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 14689999999842 67777788899999999999996 788888888888888889976 58999999
Q ss_pred CCHHHHHHH----HHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 214 VDHQQLMRV----YGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 214 ~~~~~~~~~----~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
.+.++..+. +...+..++. .....|++++||+++.+
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 141 VDDEELLELVEMEVRELLSKYDF--PGDDTPIIRGSALKALE 180 (396)
T ss_pred cchHHHHHHHHHHHHHHHHhcCC--CccCCcEEEeecccccC
Confidence 864433222 2223322222 12346889999998754
|
|
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-13 Score=123.68 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=99.0
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+..++|+|+|.+|||||.|+-++.+..+.. ....| +.|..... .++.-|..
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e---~~~sT----IGVDf~~r----------t~e~~gk~---------- 57 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTE---SYIST----IGVDFKIR----------TVELDGKT---------- 57 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcch---hhcce----eeeEEEEE----------EeeecceE----------
Confidence 34567899999999999999999999887631 11112 11111110 11111111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVl 208 (551)
-.+.||||+|... |...+..+.++|+.||+|+|.++.........|+..+++ .+.|.++|.
T Consensus 58 -----iKlQIWDTAGQER-----------Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVG 121 (205)
T KOG0084|consen 58 -----IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVG 121 (205)
T ss_pred -----EEEEeeeccccHH-----------HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEe
Confidence 2589999999864 778889999999999999999963333333566666664 356899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+...+.......+. . ..+.++.+.+||+.+.++
T Consensus 122 NK~Dl~~~~~v~~~~a~~fa---~--~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 122 NKCDLTEKRVVSTEEAQEFA---D--ELGIPIFLETSAKDSTNV 160 (205)
T ss_pred eccccHhheecCHHHHHHHH---H--hcCCcceeecccCCccCH
Confidence 99999865443222222221 1 111222778999988876
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=124.81 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=85.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+++|.+|+|||||++++++..+... ..||. +.... +..+. .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~-------------- 46 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTVGG-----------------K-------------- 46 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCceeeeeEEEEEECC-----------------E--------------
Confidence 3799999999999999999998875311 11221 11111 10000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHh--CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALR--GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~--~~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|..+ .-+.+. ..+...+. ..+.|+++|+||
T Consensus 47 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~~~~~-~~s~~~~~~~~~~~l~~~~~~~piivv~nK 113 (174)
T cd04135 47 -QYLLGLYDTAGQED-----------YDRLRPLSYPMTDVFLICFSVVN-PASFQNVKEEWVPELKEYAPNVPYLLVGTQ 113 (174)
T ss_pred -EEEEEEEeCCCccc-----------ccccccccCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhhCCCCCEEEEeEc
Confidence 02378999999764 12222345678999999999985 222111 23444443 357899999999
Q ss_pred CCCCCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+......... ........ .....+.+.+||++|.|+
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~Sa~~~~gi 162 (174)
T cd04135 114 IDLRDDPKTLARLNDMKEKPVTVEQGQKLAK--EIGAHCYVECSALTQKGL 162 (174)
T ss_pred hhhhcChhhHHHHhhccCCCCCHHHHHHHHH--HcCCCEEEEecCCcCCCH
Confidence 99865332111000 00000001 112235788999999998
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=126.01 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=87.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|+|||||++++++..+.. ...||. +...... .+++ .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~------------------------------~~~~-~ 46 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT---EYVPTAFDNFSVVV------------------------------LVDG-K 46 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCceeeeeeEEE------------------------------EECC-E
Confidence 368999999999999999999876521 222332 1111100 0000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.+|||||... +......++..+|++++|+|..+ ..+.+. ..++..+.. .+.|+++|+||+
T Consensus 47 ~~~~~i~Dt~G~~~-----------~~~~~~~~~~~a~~~i~v~d~~~-~~sf~~~~~~~~~~~~~~~~~~piilv~nK~ 114 (173)
T cd04130 47 PVRLQLCDTAGQDE-----------FDKLRPLCYPDTDVFLLCFSVVN-PSSFQNISEKWIPEIRKHNPKAPIILVGTQA 114 (173)
T ss_pred EEEEEEEECCCChh-----------hccccccccCCCcEEEEEEECCC-HHHHHHHHHHHHHHHHhhCCCCCEEEEeeCh
Confidence 03478999999854 22223346689999999999985 222221 245555543 368999999999
Q ss_pred CCCCHHHHHH---------HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR---------VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~---------~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...... +-......+.. .....+++.+||++|.|+
T Consensus 115 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~--~~~~~~~~e~Sa~~~~~v 162 (173)
T cd04130 115 DLRTDVNVLIQLARYGEKPVSQSRAKALAE--KIGACEYIECSALTQKNL 162 (173)
T ss_pred hhccChhHHHHHhhcCCCCcCHHHHHHHHH--HhCCCeEEEEeCCCCCCH
Confidence 9975321100 00000001111 112236788999999988
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=116.86 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=83.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
++|+++|.+|+|||||+|+|++... .....+..+.+.... +..+. .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~-------------- 48 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEYKPGTTRNYVTTVIEEDG------------------K-------------- 48 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcCCCCceeeeeEEEEEECC------------------E--------------
Confidence 5899999999999999999999873 222222222222111 11110 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC------CCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL------DISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~------~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
...+.+|||||... +..........++.++.++|.... ........+...+ ..+.|+++|+|
T Consensus 49 ~~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~n 116 (161)
T TIGR00231 49 TYKFNLLDTAGQED-----------YRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGN 116 (161)
T ss_pred EEEEEEEECCCccc-----------chHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEE
Confidence 02378999999643 233334445667777777776531 1111112222222 22789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.... ........+..++ ..+.+.+||..+.++
T Consensus 117 K~D~~~~~-~~~~~~~~~~~~~------~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 117 KIDLRDAK-LKTHVAFLFAKLN------GEPIIPLSAETGKNI 152 (161)
T ss_pred cccCCcch-hhHHHHHHHhhcc------CCceEEeecCCCCCH
Confidence 99998743 2222233332222 235788999988887
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-13 Score=131.28 Aligned_cols=180 Identities=22% Similarity=0.240 Sum_probs=115.6
Q ss_pred EEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 140 SIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 140 ~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
..-+-||+... -.+.++.-+...|+||.|-||+ .+++.....+-+.+. .++-|+|+||+||.+..+.
T Consensus 25 ~~~wfpgHmak----------alr~i~~~l~~~D~iiEvrDaR-iPLssrn~~~~~~~~--~k~riiVlNK~DLad~~~~ 91 (335)
T KOG2485|consen 25 PRRWFPGHMAK----------ALRAIQNRLPLVDCIIEVRDAR-IPLSSRNELFQDFLP--PKPRIIVLNKMDLADPKEQ 91 (335)
T ss_pred ccccCchHHHH----------HHHHHHhhcccccEEEEeeccc-cCCccccHHHHHhcC--CCceEEEEecccccCchhh
Confidence 34456777531 2456667789999999999999 588888866666655 7889999999999996665
Q ss_pred HHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCC
Q psy11743 220 MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYE 299 (551)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 299 (551)
..+....-|.... . ....++....+ .++.+++..+... ..++.+..+
T Consensus 92 k~~iq~~~~~~~~---~----~~~~~c~~~~~-----------~~v~~l~~il~~~--------~~~l~r~ir------- 138 (335)
T KOG2485|consen 92 KKIIQYLEWQNLE---S----YIKLDCNKDCN-----------KQVSPLLKILTIL--------SEELVRFIR------- 138 (335)
T ss_pred hHHHHHHHhhccc---c----hhhhhhhhhhh-----------hccccHHHHHHHH--------HHHHHHhhc-------
Confidence 5555555554222 0 01112111110 1112232222100 111111111
Q ss_pred ccccCCCcEEEEEeecCCChhHHHHHHHhCC---CCcccccCCCcccceEE--EE-ecCCCccccCCceeecCC
Q psy11743 300 DADFDAKPTVMLVGQYSTGKTTFIRYLLERD---FPGIHIGPEPTTDRFIA--VM-YDEREGSVPGNALVVDPK 367 (551)
Q Consensus 300 ~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~---~~~~~v~~~~~~tr~~~--~~-~~~~~~~l~dt~gi~~~~ 367 (551)
.....+.++++|.|||||||++|++.... ...+.++.+||.|+.+. +. .++..+.++||||+..|.
T Consensus 139 --t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 139 --TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred --ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 12246789999999999999999998662 24589999999998554 23 366778899999999986
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-13 Score=123.28 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=87.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+.++++..+. ....||......... .++.. .
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~---~~~~~t~~~~~~~~~-----------------------------~~~~~-~ 48 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTVFDNYSANV-----------------------------MVDGK-P 48 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---CcCCCcceeeeEEEE-----------------------------EECCE-E
Confidence 47999999999999999999987652 222333321110000 00000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......++..+|++|+|+|..+....... ..++..+.. .+.|+++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 49 VNLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred EEEEEEECCCchh-----------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhh
Confidence 3478999999754 344445567899999999999862211121 234444432 36899999999999
Q ss_pred CCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.....+.+.. ....+.. .....+.+.+||++|.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~Sa~~~~~i 163 (174)
T cd01871 118 RDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQKGL 163 (174)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHH--HcCCcEEEEecccccCCH
Confidence 643211100000 0000000 112236788999999988
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-13 Score=139.69 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=98.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCC----------CCCCcc--ceEEEEEeCCCccccCCCCccccccccccccc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHI----------GPEPTT--DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLN 124 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~----------~~~~tt--~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~ 124 (551)
.+|+++|+.++|||||+++|+...-..... ..+.+. -....++....+..-.|..++ .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid----------~ 70 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITID----------V 70 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeE----------e
Confidence 369999999999999999999765321110 011111 111222221111111111111 0
Q ss_pred ceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-c
Q psy11743 125 RFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-K 203 (551)
Q Consensus 125 ~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~ 203 (551)
.+..... .. .++.||||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+. +
T Consensus 71 ~~~~~~~-~~--~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~-G~~~qt~~~~~~~~~~~~~~ 135 (406)
T TIGR02034 71 AYRYFST-DK--RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARK-GVLEQTRRHSYIASLLGIRH 135 (406)
T ss_pred eeEEEcc-CC--eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCccccHHHHHHHHHcCCCc
Confidence 0111111 11 4689999999754 56666678899999999999986 777777666666655444 5
Q ss_pred EEEEEcCCCCCCHH-HHHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 204 IRIVLNKADMVDHQ-QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 204 vilVlNK~Dl~~~~-~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+++|+||+|+.... +..+.....+..+..-.+....+++++||++|.|+.
T Consensus 136 iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 136 VVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 88899999998522 221111222211111012224578999999999883
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=125.22 Aligned_cols=88 Identities=27% Similarity=0.333 Sum_probs=58.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|.+|+|||||+|+|+|.... +...+.+|.+.....+. ++ + .
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~-----------------~~-----~-----------~ 47 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLE-----------------YK-----G-----------A 47 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEE-----------------EC-----C-----------e
Confidence 6899999999999999999997632 33334444443322111 00 0 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
.+.++||||+.+.... ...+..+....++++|++++|+|+.+
T Consensus 48 ~i~l~DtpG~~~~~~~----~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 48 KIQLLDLPGIIEGAAD----GKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred EEEEEECCCccccccc----chhHHHHHHHhhccCCEEEEEecCCc
Confidence 5899999998764321 11234455667899999999999874
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-12 Score=139.48 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH-
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH- 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~- 216 (551)
.+.||||||+.+ |...+..++..+|++++|+|+++ +.+.+....+..+...+.|+++|+||+|+...
T Consensus 71 ~l~liDTPG~~d-----------F~~~v~~~l~~aD~aILVvDat~-g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~ 138 (595)
T TIGR01393 71 VLNLIDTPGHVD-----------FSYEVSRSLAACEGALLLVDAAQ-GIEAQTLANVYLALENDLEIIPVINKIDLPSAD 138 (595)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHhCCEEEEEecCCC-CCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC
Confidence 589999999975 56667788999999999999996 66666554444444567899999999998642
Q ss_pred -HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 -QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 -~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+...+.+.. .++ .+...++++||++|.|+
T Consensus 139 ~~~~~~el~~---~lg----~~~~~vi~vSAktG~GI 168 (595)
T TIGR01393 139 PERVKKEIEE---VIG----LDASEAILASAKTGIGI 168 (595)
T ss_pred HHHHHHHHHH---HhC----CCcceEEEeeccCCCCH
Confidence 221111211 122 22235789999999987
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-12 Score=138.30 Aligned_cols=168 Identities=21% Similarity=0.163 Sum_probs=103.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|+.++|||||+++|+...-.... .+.+.+ .+..+.+.+ ...|..+. .....-.+.+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~--~~~~~~--~v~D~~~~E-~erGiTi~--~~~~~i~~~~--------- 67 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDS--RAETQE--RVMDSNDLE-KERGITIL--AKNTAIKWND--------- 67 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccc--ccccce--eeecccccc-ccCceEEE--EEEEEEecCC---------
Confidence 3467999999999999999999974311111 111111 111111111 00110000 0000000111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+...+.|.++|+||+|+.
T Consensus 68 --~~inliDTPG~~d-----------f~~~v~~~l~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~gip~IVviNKiD~~ 133 (607)
T PRK10218 68 --YRINIVDTPGHAD-----------FGGEVERVMSMVDSVLLVVDAFD-GPMPQTRFVTKKAFAYGLKPIVVINKVDRP 133 (607)
T ss_pred --EEEEEEECCCcch-----------hHHHHHHHHHhCCEEEEEEeccc-CccHHHHHHHHHHHHcCCCEEEEEECcCCC
Confidence 4689999999875 56677788999999999999986 777777778888778899999999999986
Q ss_pred CH--HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DH--QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~--~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.. +...+.....+-.++........|++++||++|.+.
T Consensus 134 ~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~ 173 (607)
T PRK10218 134 GARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAG 173 (607)
T ss_pred CCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCccc
Confidence 42 222233333332223221122468999999998754
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=122.58 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|..|||||||+++++...+. ....||........ +.+++.
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~~-----------------------------~~~~~~ 49 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFP---KEYIPTVFDNYSAQ-----------------------------TAVDGR 49 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCC---cCCCCceEeeeEEE-----------------------------EEECCE
Confidence 3478999999999999999999987752 22233321110000 000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHhC--CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.+|||||... +......++.++|++++|+|..+........ .|...+.. .+.|+++|.||+
T Consensus 50 -~~~l~i~Dt~G~e~-----------~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~ 117 (191)
T cd01875 50 -TVSLNLWDTAGQEE-----------YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKK 117 (191)
T ss_pred -EEEEEEEECCCchh-----------hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeCh
Confidence 03488999999864 4545556788999999999998622212222 24443332 468999999999
Q ss_pred CCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.... ....+.. .....+.+.+||++|.|+
T Consensus 118 DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~--~~~~~~~~e~SAk~g~~v 165 (191)
T cd01875 118 DLRNDADTLKKLKEQGQAPITPQQGGALAK--QIHAVKYLECSALNQDGV 165 (191)
T ss_pred hhhcChhhHHHHhhccCCCCCHHHHHHHHH--HcCCcEEEEeCCCCCCCH
Confidence 99643221111000 0000000 111236788999999988
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=126.57 Aligned_cols=151 Identities=25% Similarity=0.327 Sum_probs=98.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEE-EEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
....-|.+||-||+|||||+|+|...+- .++..+.|+ ... .++|++.
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp---kVa~YaFTTL~P~iG~v~yddf--------------------------- 243 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP---KVAHYAFTTLRPHIGTVNYDDF--------------------------- 243 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC---cccccceeeeccccceeecccc---------------------------
Confidence 3446789999999999999999998763 333333222 111 2222220
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC---CCChHHHHHHHHHhC-----CCC
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL---DISDEFRRSIEALRG-----HDD 202 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~---~~~~~~~~~l~~l~~-----~~~ 202 (551)
.++++-|.||+..+....-..+++|. ..+++|+.++||+|.+.. ..+.+...+...+.. ..+
T Consensus 244 ------~q~tVADiPGiI~GAh~nkGlG~~FL----rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~r 313 (366)
T KOG1489|consen 244 ------SQITVADIPGIIEGAHMNKGLGYKFL----RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADR 313 (366)
T ss_pred ------ceeEeccCccccccccccCcccHHHH----HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccC
Confidence 34899999999986654444444444 456899999999999964 334444444444432 468
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 203 KIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 203 ~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.++|+||+|+.+.++ ..+.++..++.. +.++.+||+.++++
T Consensus 314 p~liVaNKiD~~eae~--~~l~~L~~~lq~------~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 314 PALIVANKIDLPEAEK--NLLSSLAKRLQN------PHVVPVSAKSGEGL 355 (366)
T ss_pred ceEEEEeccCchhHHH--HHHHHHHHHcCC------CcEEEeeeccccch
Confidence 8999999999964332 122344433332 26889999998887
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-13 Score=140.55 Aligned_cols=57 Identities=26% Similarity=0.272 Sum_probs=47.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecC-CCccccCCceeecCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDE-REGSVPGNALVVDPK 367 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~-~~~~l~dt~gi~~~~ 367 (551)
.|+|+|.||+|||||+|+|.+.. ..|+++|+||+... +.+++ ..+.|+||||+..+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k---~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK---PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc---ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 69999999999999999999887 58999999997333 34454 459999999998754
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=144.47 Aligned_cols=141 Identities=21% Similarity=0.160 Sum_probs=87.7
Q ss_pred eccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeEEE
Q psy11743 63 GQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIV 142 (551)
Q Consensus 63 G~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lI 142 (551)
|++|||||||+|+|+|.+. .+...|+.|.+....... ++ + .++.++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~-----------------~~-----~-----------~~i~lv 46 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLG-----------------FQ-----G-----------EDIEIV 46 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEE-----------------EC-----C-----------eEEEEE
Confidence 8999999999999999874 344445545444322111 00 0 348999
Q ss_pred eCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHH
Q psy11743 143 DTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLM 220 (551)
Q Consensus 143 DTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~ 220 (551)
||||+.+-... +.. .+..+.++ ..+|++++|+|+++ . +....+...+.+.+.|+++|+||+|+.+.....
T Consensus 47 DtPG~~~~~~~--s~~---e~v~~~~l~~~~aDvvI~VvDat~--l-er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~ 118 (591)
T TIGR00437 47 DLPGIYSLTTF--SLE---EEVARDYLLNEKPDLVVNVVDASN--L-ERNLYLTLQLLELGIPMILALNLVDEAEKKGIR 118 (591)
T ss_pred ECCCccccCcc--chH---HHHHHHHHhhcCCCEEEEEecCCc--c-hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCCh
Confidence 99999763221 110 12223332 47999999999985 2 223344455566789999999999986433221
Q ss_pred HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 221 RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.........+ ..+++.+||++|.|+
T Consensus 119 ~d~~~L~~~l-------g~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 119 IDEEKLEERL-------GVPVVPTSATEGRGI 143 (591)
T ss_pred hhHHHHHHHc-------CCCEEEEECCCCCCH
Confidence 1112222222 246889999999988
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-12 Score=120.38 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=73.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||++++++..+. ....||....... .+.++.. .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~---~~~~~t~~~~~~~-----------------------------~~~~~~~-~ 48 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP---ETYVPTVFENYTA-----------------------------SFEIDEQ-R 48 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC---CCcCCceEEEEEE-----------------------------EEEECCE-E
Confidence 57999999999999999999988753 2222332111000 0000000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
..+.+|||||... +......++..+|++|+|+|..+....... ..|...+++ ...|+++|.||+|+
T Consensus 49 ~~l~iwDt~G~~~-----------~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL 117 (178)
T cd04131 49 IELSLWDTSGSPY-----------YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred EEEEEEECCCchh-----------hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhh
Confidence 3488999999753 333444567899999999999863222221 345555543 36789999999998
Q ss_pred CC
Q psy11743 214 VD 215 (551)
Q Consensus 214 ~~ 215 (551)
.+
T Consensus 118 ~~ 119 (178)
T cd04131 118 RT 119 (178)
T ss_pred hc
Confidence 53
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-12 Score=120.76 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=75.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|..|||||||++++++..+. ....||........ +.+++.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~---~~~~pT~~~~~~~~-----------------------------~~~~~~ 51 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTAS-----------------------------FEIDTQ 51 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC---CccCCceeeeeEEE-----------------------------EEECCE
Confidence 3568999999999999999999988753 22233321110000 000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK 210 (551)
.-.+.+|||+|... +......++.++|++++|+|..+ .-+... ..|...+++ .+.|+++|.||
T Consensus 52 -~~~l~iwDtaG~e~-----------~~~~~~~~~~~ad~~ilvyDit~-~~Sf~~~~~~w~~~i~~~~~~~piilVgNK 118 (182)
T cd04172 52 -RIELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISR-PETLDSVLKKWKGEIQEFCPNTKMLLVGCK 118 (182)
T ss_pred -EEEEEEEECCCchh-----------hHhhhhhhcCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEeEC
Confidence 03488999999753 44455567899999999999986 222222 345555543 36789999999
Q ss_pred CCCCC
Q psy11743 211 ADMVD 215 (551)
Q Consensus 211 ~Dl~~ 215 (551)
+|+.+
T Consensus 119 ~DL~~ 123 (182)
T cd04172 119 SDLRT 123 (182)
T ss_pred hhhhc
Confidence 99853
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=135.20 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCC-CcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHD-DKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~-~~vilVlNK~Dl~ 214 (551)
..+++|||||+.+ |...+...+..+|++++|+|+.. +. ..+..+.+..+...+ +++++|+||+|+.
T Consensus 80 ~~i~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~-g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 80 RRVSFVDAPGHET-----------LMATMLSGAALMDGALLVIAANE-PCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCC-CccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 4689999999854 66667777889999999999996 44 455555565555444 4689999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.....+......+... .....+++++||++|.|+
T Consensus 148 ~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi 184 (406)
T TIGR03680 148 SKEKALENYEEIKEFVKGT-VAENAPIIPVSALHNANI 184 (406)
T ss_pred CHHHHHHHHHHHHhhhhhc-ccCCCeEEEEECCCCCCh
Confidence 7544322222111111110 112457899999999887
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=120.95 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=89.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|..++|||||+.+++...+. ....||........ +.+++. .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~---~~~~~Ti~~~~~~~-----------------------------~~~~~~-~ 48 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSAN-----------------------------VSVDGN-T 48 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC---CCCCCcceeeeEEE-----------------------------EEECCE-E
Confidence 47999999999999999999987752 22333431111000 000000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK~D 212 (551)
-.+.++||+|... +......++.++|++|+|+|..+ .-+.+. ..|+..+++ .+.|+++|.||+|
T Consensus 49 v~l~i~Dt~G~~~-----------~~~~~~~~~~~a~~~ilvyd~~~-~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (176)
T cd04133 49 VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLIS-RASYENVLKKWVPELRHYAPNVPIVLVGTKLD 116 (176)
T ss_pred EEEEEEECCCCcc-----------ccccchhhcCCCcEEEEEEEcCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence 3489999999864 34444557789999999999986 233322 345665542 4689999999999
Q ss_pred CCCHHH----------HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQ----------LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~----------~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+... +..... ..+.. .....+.+.+||++|.++
T Consensus 117 l~~~~~~~~~~~~~~~v~~~~~-~~~a~----~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 117 LRDDKQYLADHPGASPITTAQG-EELRK----QIGAAAYIECSSKTQQNV 161 (176)
T ss_pred hccChhhhhhccCCCCCCHHHH-HHHHH----HcCCCEEEECCCCcccCH
Confidence 965321 111111 11111 111125678999999988
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=126.25 Aligned_cols=130 Identities=20% Similarity=0.185 Sum_probs=82.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|+.|+|||||+++|+...-.+...+. ..+..+...+...+ .-.|..+. ..+..-.+.+ .
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~--v~~~~~~~D~~~~e-~~rg~ti~--~~~~~~~~~~-----------~ 64 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGS--VDKGTTRTDTMELE-RQRGITIF--SAVASFQWED-----------T 64 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccc--ccCCcccCCCchhH-hhCCCcee--eeeEEEEECC-----------E
Confidence 3899999999999999999986432211110 00000000000000 00000000 0000011111 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
++.+|||||+.+ |...+..++..+|++++|+|+.. +...+...+.+.+...++|+++|+||+|+..
T Consensus 65 ~i~liDTPG~~~-----------f~~~~~~~l~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 65 KVNLIDTPGHMD-----------FIAEVERSLSVLDGAILVISAVE-GVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred EEEEEeCCCccc-----------hHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 689999999965 56667788899999999999996 7777777888888888999999999999974
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-12 Score=121.87 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=92.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCC-CCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFP-GIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~-~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.....|+++|.+|+|||||+|.|++.... ......++ ++.+..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~~~-------------------------------- 80 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVVTG-------------------------------- 80 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEEec--------------------------------
Confidence 34578999999999999999999986311 01101110 111000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKA 211 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~ 211 (551)
...++.++||||.. ..+...+..+|++++|+|+.. +....+..++..+...+.|.+ +|+||+
T Consensus 81 --~~~~i~~vDtPg~~--------------~~~l~~ak~aDvVllviDa~~-~~~~~~~~i~~~l~~~g~p~vi~VvnK~ 143 (225)
T cd01882 81 --KKRRLTFIECPNDI--------------NAMIDIAKVADLVLLLIDASF-GFEMETFEFLNILQVHGFPRVMGVLTHL 143 (225)
T ss_pred --CCceEEEEeCCchH--------------HHHHHHHHhcCEEEEEEecCc-CCCHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 01568999999742 223345688999999999985 777888888888887788854 599999
Q ss_pred CCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+++... ..+........+.. ...++.+++++||++...+
T Consensus 144 D~~~~~~~~~~~~~~l~~~~~~-~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 144 DLFKKNKTLRKTKKRLKHRFWT-EVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred ccCCcHHHHHHHHHHHHHHHHH-hhCCCCcEEEEeeccCCCC
Confidence 9985332 22221111111110 0124678999999877554
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=124.86 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=76.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|..|||||||++++++..+. ....||........ ..+.+ .
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~---~~y~pTi~~~~~~~-----i~~~~----------~-------------- 59 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP---ETYVPTVFENYTAG-----LETEE----------Q-------------- 59 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCC---CCcCCceeeeeEEE-----EEECC----------E--------------
Confidence 3468999999999999999999988753 22233321110000 00000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK 210 (551)
...+.||||+|... +......++.++|++++|+|.++ .-+... ..|+..+.+ .+.|+++|.||
T Consensus 60 -~v~l~iwDTaG~e~-----------~~~~~~~~~~~ad~vIlVyDit~-~~Sf~~~~~~w~~~i~~~~~~~piilVgNK 126 (232)
T cd04174 60 -RVELSLWDTSGSPY-----------YDNVRPLCYSDSDAVLLCFDISR-PETVDSALKKWKAEIMDYCPSTRILLIGCK 126 (232)
T ss_pred -EEEEEEEeCCCchh-----------hHHHHHHHcCCCcEEEEEEECCC-hHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 03489999999753 45556667899999999999986 222221 345555543 36789999999
Q ss_pred CCCCC
Q psy11743 211 ADMVD 215 (551)
Q Consensus 211 ~Dl~~ 215 (551)
+|+..
T Consensus 127 ~DL~~ 131 (232)
T cd04174 127 TDLRT 131 (232)
T ss_pred ccccc
Confidence 99853
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-12 Score=119.36 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=101.3
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+..++|+++|.++||||+++-++....+. .....| +.|.... ..+.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~---~~~~sT----iGIDFk~------------------------kti~l 56 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFN---TSFIST----IGIDFKI------------------------KTIEL 56 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCc---CCccce----EEEEEEE------------------------EEEEe
Confidence 4456789999999999999999999987752 111111 1111111 01111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVl 208 (551)
++ .--.+.+|||+|... |...+..++.+|+.+++|+|..+....+....|++.+.++ +.+.++|.
T Consensus 57 ~g-~~i~lQiWDtaGQer-----------f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvG 124 (207)
T KOG0078|consen 57 DG-KKIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVG 124 (207)
T ss_pred CC-eEEEEEEEEcccchh-----------HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEee
Confidence 11 013588999999875 7888999999999999999998632333335577766643 67899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+....++.....+.+. ..-+.+...+||++|.++
T Consensus 125 NK~D~~~~R~V~~e~ge~lA------~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 125 NKCDLEEKRQVSKERGEALA------REYGIKFFETSAKTNFNI 162 (207)
T ss_pred ccccccccccccHHHHHHHH------HHhCCeEEEccccCCCCH
Confidence 99999875444322222221 112446778999999998
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-12 Score=121.19 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=79.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCC-CCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC--C
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHI-GPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS--P 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~-~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~--~ 134 (551)
.|+++|+.|+|||||+++|++........ .+...+.. .+........ .|.............. .
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~---~~d~~~~e~~----------~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLR---YTDIRKDEQE----------RGISIKSSPISLVLPDSKG 68 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCcee---ECCCCHHHHH----------cCccccccceeEEEEcCCC
Confidence 58999999999999999999876432110 00001001 0000000000 0110000000000000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
-...+.+|||||+.+ +...+..++..+|++++|+|+.. +.+.....+++.+...+.|+++|+||+|++
T Consensus 69 ~~~~i~iiDtpG~~~-----------f~~~~~~~~~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVN-----------FMDEVAAALRLSDGVVLVVDVVE-GVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcc-----------hHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 014589999999875 55667778899999999999986 566666666666666679999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=125.24 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=96.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
-|.+||-||+|||||++++...+- -+..-|-+|-.....+..-. . -.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~------------------------------~--~~ 207 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVD------------------------------G--GE 207 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEec------------------------------C--CC
Confidence 478999999999999999998762 23333333333322222110 0 05
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC---ChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI---SDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~---~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
++++-|-||+.++..+....+.+|. ..++++-++++|+|.+...- ......+...|.. .++|.++|+|
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FL----rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~N 283 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFL----RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLN 283 (369)
T ss_pred cEEEecCcccccccccCCCccHHHH----HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEe
Confidence 6999999999988766555555554 44689999999999984332 2222334444443 3789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+...++..+.....+.. ...+...+++|+.++.++
T Consensus 284 KiD~~~~~e~~~~~~~~l~~-----~~~~~~~~~ISa~t~~g~ 321 (369)
T COG0536 284 KIDLPLDEEELEELKKALAE-----ALGWEVFYLISALTREGL 321 (369)
T ss_pred ccCCCcCHHHHHHHHHHHHH-----hcCCCcceeeehhcccCH
Confidence 99966544433333333321 122333344999998887
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=125.55 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=82.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|++|||||||+|+|+|.....+...+. +|........ . +.+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~-~T~~~~~~~~-~--------------------~~g-------- 78 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQS-ETLRVREVSG-T--------------------VDG-------- 78 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC-ceEEEEEEEE-E--------------------ECC--------
Confidence 356899999999999999999999998654433332 3333222110 0 011
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRI 206 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vil 206 (551)
..+.+|||||+.+...... ........+..++. ..|++++|........+..+..+++.+.+. -.++++
T Consensus 79 ---~~i~vIDTPGl~~~~~~~~-~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~iv 154 (249)
T cd01853 79 ---FKLNIIDTPGLLESVMDQR-VNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIV 154 (249)
T ss_pred ---eEEEEEECCCcCcchhhHH-HHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEE
Confidence 4589999999987521110 01112333444453 688999997665445667777777777642 257999
Q ss_pred EEcCCCCCCH
Q psy11743 207 VLNKADMVDH 216 (551)
Q Consensus 207 VlNK~Dl~~~ 216 (551)
|+||+|..++
T Consensus 155 V~T~~d~~~p 164 (249)
T cd01853 155 VLTHAASSPP 164 (249)
T ss_pred EEeCCccCCC
Confidence 9999999854
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=123.17 Aligned_cols=156 Identities=17% Similarity=0.299 Sum_probs=98.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCC---CCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIH---IGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~---~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.+..|+++|.+|+|||||||+|++.+...+. .+..+++.-. ..++.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~--------------------~~~~~----------- 86 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR--------------------LSYDG----------- 86 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH--------------------hhccc-----------
Confidence 3456779999999999999999976643222 1111111110 00111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh--CCCCcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR--GHDDKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~~vilVlN 209 (551)
+.++|+||||+.++... ..++.+....++.+.|++++++|+.+..++. +..+++.+. ..++++++|+|
T Consensus 87 -----~~l~lwDtPG~gdg~~~----D~~~r~~~~d~l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 87 -----ENLVLWDTPGLGDGKDK----DAEHRQLYRDYLPKLDLVLWLIKADDRALGT-DEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred -----cceEEecCCCcccchhh----hHHHHHHHHHHhhhccEEEEeccCCCccccC-CHHHHHHHHHhccCceeEEEEe
Confidence 45999999999986432 2346777888999999999999998744433 334444332 34689999999
Q ss_pred CCCCCCH------------HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDH------------QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~------------~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+|...+ ....+.......+++.+. .+.-|+++++...+.|+
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~-q~V~pV~~~~~r~~wgl 210 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF-QEVKPVVAVSGRLPWGL 210 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH-hhcCCeEEeccccCccH
Confidence 9998654 122222333333333322 23557888887777776
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=124.43 Aligned_cols=135 Identities=21% Similarity=0.239 Sum_probs=82.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC------CccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE------PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~------~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
.++|+++|++|+|||||+|+|++..+......+. +.|......... +...|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~-------------i~~~g---------- 60 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAE-------------IEENG---------- 60 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEE-------------EEECC----------
Confidence 3689999999999999999999988643322111 111111100000 00000
Q ss_pred ecCCCCccCeEEEeCCCCCCCccccccc--cc-----chHHHHH--------HHH--hccCEEEEEEeCCCCCCChHHHH
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDR--GY-----DFTGVLE--------WFA--ERVDRIILLFDAHKLDISDEFRR 192 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~--~~-----~~~~~~~--------~~~--~~aD~il~VvDa~~~~~~~~~~~ 192 (551)
.-..+++|||||+.+........ -. .+...+. ..+ .++|++++++++...++...+.+
T Consensus 61 -----~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~ 135 (276)
T cd01850 61 -----VKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE 135 (276)
T ss_pred -----EEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH
Confidence 00358999999997643210000 00 0000000 011 26899999999885577888889
Q ss_pred HHHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 193 SIEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 193 ~l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
+++.+.. ..|+++|+||+|++..+++
T Consensus 136 ~lk~l~~-~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 136 FMKRLSK-RVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHhc-cCCEEEEEECCCcCCHHHH
Confidence 9998876 7899999999999886554
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-12 Score=140.85 Aligned_cols=164 Identities=18% Similarity=0.134 Sum_probs=97.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+....|+|+|++|+|||||+|+|+...-.... .+.+.+. ..++.........|..++. ....-.|.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~~~~~~g-~~~~D~~~~e~~rgiti~~--~~~~~~~~~-------- 74 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHK--IGEVHDG-AATMDWMEQEKERGITITS--AATTVFWKG-------- 74 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccc--cccccCC-ccccCCCHHHHhcCCCEec--ceEEEEECC--------
Confidence 34568999999999999999999975421101 1101000 0000000000001111110 011111112
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+ +...+..++..+|++++|+|+.. +...+...++..+...++|+++|+||+|+
T Consensus 75 ---~~i~liDTPG~~~-----------~~~~~~~~l~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 139 (689)
T TIGR00484 75 ---HRINIIDTPGHVD-----------FTVEVERSLRVLDGAVAVLDAVG-GVQPQSETVWRQANRYEVPRIAFVNKMDK 139 (689)
T ss_pred ---eEEEEEECCCCcc-----------hhHHHHHHHHHhCEEEEEEeCCC-CCChhHHHHHHHHHHcCCCEEEEEECCCC
Confidence 5699999999975 44456778899999999999996 77788788888888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
.... ..+........++. .+.+..+++|+..+
T Consensus 140 ~~~~-~~~~~~~i~~~l~~---~~~~~~ipis~~~~ 171 (689)
T TIGR00484 140 TGAN-FLRVVNQIKQRLGA---NAVPIQLPIGAEDN 171 (689)
T ss_pred CCCC-HHHHHHHHHHHhCC---CceeEEeccccCCC
Confidence 8532 22222222222332 23334566777655
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-12 Score=142.87 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=99.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|++|+|||||+|+|+...-..... +...+..+...+.. ...-.|..++. ....-.|.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~--g~v~~~~~~~D~~~-~E~~rg~ti~~--~~~~~~~~~--------- 74 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKI--GEVHDGAATMDWME-QEQERGITITS--AATTCFWKD--------- 74 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcccc--ccccCCcccCCCCH-HHHhCCCCEec--cEEEEEECC---------
Confidence 45689999999999999999998532110000 00000000000000 00001111100 000011111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+++|||||+.+ |...+..++..+|++++|+|+.. +...++..++..+...++|+++++||+|+.
T Consensus 75 --~~~~liDTPG~~~-----------f~~ev~~al~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 75 --HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVG-GVEPQSETVWRQADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred --eEEEEEeCCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 5699999999854 55567888899999999999986 889999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
... ..+........++. .+.++.+++|+..+
T Consensus 141 ~~~-~~~~~~~i~~~l~~---~~~~~~ipisa~~~ 171 (693)
T PRK00007 141 GAD-FYRVVEQIKDRLGA---NPVPIQLPIGAEDD 171 (693)
T ss_pred CCC-HHHHHHHHHHHhCC---CeeeEEecCccCCc
Confidence 643 22233333222332 34456677777665
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=132.89 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.+ |...+..++..+|++|+|+|+++ +...+....+..+...+.|+++|+||+|+...
T Consensus 74 ~~lnLiDTPGh~d-----------F~~~v~~sl~~aD~aILVVDas~-gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 74 YILNLIDTPGHVD-----------FSYEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc
Confidence 3589999999975 56667778899999999999996 66666655555555678999999999998643
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.. .+........++ .+...++++||++|.|+
T Consensus 142 ~~-~~v~~ei~~~lg----~~~~~vi~iSAktG~GI 172 (600)
T PRK05433 142 DP-ERVKQEIEDVIG----IDASDAVLVSAKTGIGI 172 (600)
T ss_pred cH-HHHHHHHHHHhC----CCcceEEEEecCCCCCH
Confidence 21 111111111122 22235789999999987
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=128.01 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=55.9
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...+++.+...++|+++++||+|+...
T Consensus 71 ~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 71 CVINLLDTPGHED-----------FSEDTYRTLTAVDSAVMVIDAAK-GVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred EEEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 4689999999864 55567778899999999999986 66666667777777778999999999998653
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-12 Score=111.60 Aligned_cols=143 Identities=22% Similarity=0.212 Sum_probs=86.2
Q ss_pred EEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 61 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 61 ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
++|++|+|||||+|+|++.... .....+|........... .+. ...+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~--~~~~~~t~~~~~~~~~~~---------------~~~---------------~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV--PEEYETTIIDFYSKTIEV---------------DGK---------------KVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC--CcccccchhheeeEEEEE---------------CCE---------------EEEEE
Confidence 5899999999999999998752 122222221111111000 000 04589
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHH-----HHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRR-----SIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~-----~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
++||||... ...........+|++++|+|+.. +.+..... ........+.|+++|+||+|+..
T Consensus 49 l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 49 IWDTAGQER-----------FRSLRRLYYRGADGIILVYDVTD-RESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEecCChHH-----------HHhHHHHHhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 999999875 22233566789999999999986 33333222 12233456899999999999986
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.............. .....+.+.+|+..+.++
T Consensus 117 ~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 117 ERVVSEEELAEQLA-----KELGVPYFETSAKTGENV 148 (157)
T ss_pred ccchHHHHHHHHHH-----hhcCCcEEEEecCCCCCh
Confidence 54332211011111 223457889999888876
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.5e-12 Score=119.67 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=85.1
Q ss_pred EeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeE
Q psy11743 62 VGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGIS 140 (551)
Q Consensus 62 vG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 140 (551)
+|..|||||||++++++..+. ....||.. .+...... ++.. ...+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~---~~~~~Tig~~~~~~~~~----------------~~~~--------------~~~l~ 47 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE---KKYVATLGVEVHPLVFH----------------TNRG--------------PIRFN 47 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC---CCCCCceeEEEEEEEEE----------------ECCE--------------EEEEE
Confidence 699999999999999976542 12223321 11110000 0000 03589
Q ss_pred EEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCCCHHH
Q psy11743 141 IVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMVDHQQ 218 (551)
Q Consensus 141 lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~~~~~ 218 (551)
||||||... +......++.++|++++|+|+++.........|+..+.+ .+.|+++|.||+|+.....
T Consensus 48 iwDt~G~e~-----------~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v 116 (200)
T smart00176 48 VWDTAGQEK-----------FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV 116 (200)
T ss_pred EEECCCchh-----------hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 999999864 555666788999999999999862222222455555554 4689999999999854211
Q ss_pred HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 219 LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..+. .. +.. ....+.+.+||++|.|+
T Consensus 117 ~~~~-~~--~~~-----~~~~~~~e~SAk~~~~v 142 (200)
T smart00176 117 KAKS-IT--FHR-----KKNLQYYDISAKSNYNF 142 (200)
T ss_pred CHHH-HH--HHH-----HcCCEEEEEeCCCCCCH
Confidence 1111 11 111 11235688999999998
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=133.89 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=73.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~~~~l~~l~~~~~~-vilVl 208 (551)
..++||||||+.+ |...+...+..+|++++|+|+.. +. ..+..+.+..+...+.| +|+++
T Consensus 85 ~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~-G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 85 YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTA-GEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCC-CceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 4689999999764 77788888899999999999985 54 35667777778777877 67899
Q ss_pred cCCCCC--C--HHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMV--D--HQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~--~--~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|.. + .+.. .+.+...+..++. .....+++++|+++|.|+.
T Consensus 153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~--~~~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGY--NPEKVPFIPISGWQGDNMI 202 (446)
T ss_pred EccccccchhhHHHHHHHHHHHHHHHHhcCC--CcccceEEEeecccCCCcc
Confidence 999943 2 2222 2223333333333 2234789999999999883
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=132.01 Aligned_cols=104 Identities=19% Similarity=0.160 Sum_probs=72.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-cEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-KIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~vilVlNK~Dl~~ 215 (551)
+.+.+|||||+.+ |.+.+...+..+|++++|+|+.......+..+.+..+...+. ++++|+||+|+.+
T Consensus 117 ~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 117 RHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred ceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 5799999999753 777888888999999999999862245555555555554444 5889999999987
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+...+.+......+... .....+++++||++|.|+
T Consensus 186 ~~~~~~~~~ei~~~l~~~-~~~~~~iipVSA~~G~nI 221 (460)
T PTZ00327 186 EAQAQDQYEEIRNFVKGT-IADNAPIIPISAQLKYNI 221 (460)
T ss_pred HHHHHHHHHHHHHHHHhh-ccCCCeEEEeeCCCCCCH
Confidence 554433332221111111 124568999999999887
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=121.64 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=56.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+++|||||..+ +...+..++..+|++++|+|+.. +.......+++.+...++|.++|+||+|....
T Consensus 64 ~~i~liDtPG~~~-----------f~~~~~~~l~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 64 HKINLIDTPGYAD-----------FVGETRAALRAADAALVVVSAQS-GVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred EEEEEEECcCHHH-----------HHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 4589999999854 56677788899999999999996 66666667777777888999999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=121.25 Aligned_cols=91 Identities=27% Similarity=0.403 Sum_probs=63.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.-.+|++||.||+|||||+|.|++.+.. +..-+.+|...+-.++ +|..
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l-----------------~Y~g-------------- 109 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGML-----------------EYKG-------------- 109 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceE-----------------eecC--------------
Confidence 3468999999999999999999998731 3333333333322222 1221
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-++.++|+||+..+..+...++. ++...+++||+|++|+|+..
T Consensus 110 --a~IQild~Pgii~gas~g~grG~----~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 110 --AQIQLLDLPGIIEGASSGRGRGR----QVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred --ceEEEEcCcccccCcccCCCCcc----eeeeeeccCCEEEEEEecCC
Confidence 35999999999987665444443 34456789999999999985
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=119.43 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=73.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+|+|..|||||||++++++..+. ....||..... .+..+ +.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~---~~y~pTi~~~~~~~~~~~-----------------~~-------------- 47 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP---GSYVPTVFENYTASFEID-----------------KR-------------- 47 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---CccCCccccceEEEEEEC-----------------CE--------------
Confidence 47999999999999999999988753 22333321110 00000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.||||+|... +......++..+|++|+|+|..+....... ..|...+.. .+.|+++|.||+
T Consensus 48 -~v~L~iwDt~G~e~-----------~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~ 115 (222)
T cd04173 48 -RIELNMWDTSGSSY-----------YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKL 115 (222)
T ss_pred -EEEEEEEeCCCcHH-----------HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECc
Confidence 03488999999753 444555677999999999999862211111 123333332 468999999999
Q ss_pred CCCC
Q psy11743 212 DMVD 215 (551)
Q Consensus 212 Dl~~ 215 (551)
|+..
T Consensus 116 DL~~ 119 (222)
T cd04173 116 DMRT 119 (222)
T ss_pred cccc
Confidence 9965
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=130.90 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=65.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC---CChHHHHHHHHHhCCC-CcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD---ISDEFRRSIEALRGHD-DKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~---~~~~~~~~l~~l~~~~-~~vilVlNK~D 212 (551)
..+.+|||||+.+ |...+...+..+|++++|+|+++ + ...+..+.+..+...+ .++++|+||+|
T Consensus 85 ~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~D 152 (426)
T TIGR00483 85 YEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGD-GEFEVQPQTREHAFLARTLGINQLIVAINKMD 152 (426)
T ss_pred eEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCC-CCcccCCchHHHHHHHHHcCCCeEEEEEEChh
Confidence 4589999999753 55566667789999999999986 4 2333333333333334 46889999999
Q ss_pred CCC--HHHHH---HHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 213 MVD--HQQLM---RVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 213 l~~--~~~~~---~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+.+ .+... +.+.......+. .....+++.+||++|.|+.
T Consensus 153 l~~~~~~~~~~~~~ei~~~~~~~g~--~~~~~~~i~iSA~~g~ni~ 196 (426)
T TIGR00483 153 SVNYDEEEFEAIKKEVSNLIKKVGY--NPDTVPFIPISAWNGDNVI 196 (426)
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCC--CcccceEEEeecccccccc
Confidence 974 22221 122222222222 1223578999999999883
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.5e-12 Score=129.25 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=105.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++++|+|.||||||||+|.++..+ +.+.|.++|.+...+-+-+ |.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad---vevqpYaFTTksL~vGH~d---------------yk--------------- 213 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD---DEVQPYAFTTKLLLVGHLD---------------YK--------------- 213 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc---cccCCcccccchhhhhhhh---------------hh---------------
Confidence 45799999999999999999998877 4667777776654433221 10
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC-CCCChHH-HHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK-LDISDEF-RRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~-~~~~~~~-~~~l~~l~~--~~~~vilVlNK 210 (551)
...+.+|||||+.+.... +++..-+..+...+.--.+|||+.|.+. .+.+-.. ..++..++. .++|+|+|+||
T Consensus 214 -YlrwQViDTPGILD~plE--drN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 214 -YLRWQVIDTPGILDRPEE--DRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred -eeeeeecCCccccCcchh--hhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 045899999999974321 1111112222334456678999999883 2444333 455666653 48999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|...++++.+.-.+++..+. ....++++-.|..+..|+
T Consensus 291 ~D~m~~edL~~~~~~ll~~~~---~~~~v~v~~tS~~~eegV 329 (620)
T KOG1490|consen 291 IDAMRPEDLDQKNQELLQTII---DDGNVKVVQTSCVQEEGV 329 (620)
T ss_pred ccccCccccCHHHHHHHHHHH---hccCceEEEecccchhce
Confidence 999987766554444443322 344468889999988887
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=129.01 Aligned_cols=151 Identities=22% Similarity=0.238 Sum_probs=106.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|.|.++|+-..|||||+.++-+.++. ...++--|..+-+.. ++.+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va--~~EaGGITQhIGA~~-------------------------------v~~~ 50 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA--AGEAGGITQHIGAYQ-------------------------------VPLD 50 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc--cccCCceeeEeeeEE-------------------------------EEec
Confidence 5699999999999999999999988763 222222222221111 1100
Q ss_pred --CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 --VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 --~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
-...++|+||||+.. |..+-.+-.+-+|++++|+|+.+ ++.++..+.+..++..+.|+++.+||+|
T Consensus 51 ~~~~~~itFiDTPGHeA-----------Ft~mRaRGa~vtDIaILVVa~dD-Gv~pQTiEAI~hak~a~vP~iVAiNKiD 118 (509)
T COG0532 51 VIKIPGITFIDTPGHEA-----------FTAMRARGASVTDIAILVVAADD-GVMPQTIEAINHAKAAGVPIVVAINKID 118 (509)
T ss_pred cCCCceEEEEcCCcHHH-----------HHHHHhcCCccccEEEEEEEccC-CcchhHHHHHHHHHHCCCCEEEEEeccc
Confidence 115699999999975 55554555678999999999997 9999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHccccc--CCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVL--QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~--~~~~~~~v~iSa~~g~~~ 252 (551)
..+... .... ......|... ......++++||++|.|+
T Consensus 119 k~~~np-~~v~-~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 119 KPEANP-DKVK-QELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred CCCCCH-HHHH-HHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 985422 1111 1222334422 112357899999999998
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=116.12 Aligned_cols=115 Identities=20% Similarity=0.285 Sum_probs=71.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|.|+++|.+|||||||+++|.+..+.... +++.......+.. . + .-.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~----~s~~~~~~~~~~~-----------------~-----------~-~~~ 47 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV----TSIEPNVATFILN-----------------S-----------E-GKG 47 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc----CcEeecceEEEee-----------------c-----------C-CCC
Confidence 57999999999999999999988653211 1111111100000 0 0 000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhcc-CEEEEEEeCCCCC-CChHHHHHH-HHHh-----CCCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV-DRIILLFDAHKLD-ISDEFRRSI-EALR-----GHDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~a-D~il~VvDa~~~~-~~~~~~~~l-~~l~-----~~~~~vilVl 208 (551)
..+.+|||||+.. +......++..+ +++|+|+|+.... ......+++ ..+. ..+.|+++|+
T Consensus 48 ~~~~l~D~pG~~~-----------~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~ 116 (203)
T cd04105 48 KKFRLVDVPGHPK-----------LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIAC 116 (203)
T ss_pred ceEEEEECCCCHH-----------HHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence 4589999999864 445556677787 9999999998521 111111222 2211 2478999999
Q ss_pred cCCCCCC
Q psy11743 209 NKADMVD 215 (551)
Q Consensus 209 NK~Dl~~ 215 (551)
||+|+..
T Consensus 117 NK~Dl~~ 123 (203)
T cd04105 117 NKQDLFT 123 (203)
T ss_pred cchhhcc
Confidence 9999874
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=120.56 Aligned_cols=125 Identities=14% Similarity=0.257 Sum_probs=79.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+||||++|+|+|++.+.++.....+...... .. . . .+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~-~~-~----~----------------~G--------- 85 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMV-SR-T----R----------------AG--------- 85 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE-EE-E----E----------------CC---------
Confidence 4578999999999999999999999865443332222111111 00 0 0 01
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vilV 207 (551)
..+.+|||||+.+... ... +..+.+..++ ...|++|+|.......++..+..+++.+... -.++|+|
T Consensus 86 --~~l~VIDTPGL~d~~~--~~e--~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVV 159 (313)
T TIGR00991 86 --FTLNIIDTPGLIEGGY--IND--QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVV 159 (313)
T ss_pred --eEEEEEECCCCCchHH--HHH--HHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEE
Confidence 4699999999987421 111 1222233322 3699999996544324666767777766532 3679999
Q ss_pred EcCCCCCCH
Q psy11743 208 LNKADMVDH 216 (551)
Q Consensus 208 lNK~Dl~~~ 216 (551)
+|++|..++
T Consensus 160 fTh~d~~~p 168 (313)
T TIGR00991 160 LTHAQFSPP 168 (313)
T ss_pred EECCccCCC
Confidence 999998854
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=138.16 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=86.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|+.|+|||||+|+|+...-..... +...+..+...+... ....|..++. ......|.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~--~~v~~~~~~~D~~~~-E~~rgiti~~--~~~~~~~~~--------- 72 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKI--GEVHDGAATMDWMEQ-EQERGITITS--AATTCFWKG--------- 72 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCcccc--ccccCCccccCCChh-HhhcCCCccc--eeEEEEECC---------
Confidence 45689999999999999999998643111000 000000001001100 0001111110 000111111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+++|||||+.+ +...+..++..+|++++|+|+.. +...++..++..+...++|+++++||+|+.
T Consensus 73 --~~i~liDTPG~~~-----------f~~e~~~al~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 73 --HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVS-GVEPQSETVWRQADKYGVPRIVFVNKMDRI 138 (691)
T ss_pred --EEEEEEcCCCHHH-----------HHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 5699999999854 55567888999999999999996 888888899999888899999999999998
Q ss_pred CH
Q psy11743 215 DH 216 (551)
Q Consensus 215 ~~ 216 (551)
..
T Consensus 139 ~~ 140 (691)
T PRK12739 139 GA 140 (691)
T ss_pred CC
Confidence 64
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-12 Score=116.94 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=91.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|..|+||||++++|...... .+.||..... .+.+..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~----~~~pT~g~~~~~i~~~~------------------------------- 57 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS----ETIPTIGFNIEEIKYKG------------------------------- 57 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE----EEEEESSEEEEEEEETT-------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc----ccCcccccccceeeeCc-------------------------------
Confidence 4578999999999999999999876531 1233322211 111110
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlN 209 (551)
..+.++|.+|... +......++..+|+++||+|+.+..-..+..+.+..+ . -.+.|+++++|
T Consensus 58 ---~~~~~~d~gG~~~-----------~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 58 ---YSLTIWDLGGQES-----------FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILAN 123 (175)
T ss_dssp ---EEEEEEEESSSGG-----------GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred ---EEEEEEecccccc-----------ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEec
Confidence 4589999999653 3334455678999999999998533223333333333 2 24789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.|+.......+. ...+ .+..+.......++.+||.+|.|+
T Consensus 124 K~D~~~~~~~~~i-~~~l-~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 124 KQDLPDAMSEEEI-KEYL-GLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp STTSTTSSTHHHH-HHHT-TGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred cccccCcchhhHH-Hhhh-hhhhcccCCceEEEeeeccCCcCH
Confidence 9998753222221 1111 122232233456788999999887
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=127.97 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=68.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCCC-cEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHDD-KIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~~-~vilVlNK~Dl~ 214 (551)
..+.++||||+.+ |...+...+..+|++++|+|++. +. ..+..+.+..+...+. ++++|+||+|+.
T Consensus 85 ~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~-~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 85 RRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANE-PCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 4689999999743 56666666788999999999996 44 5555566666655554 689999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+........ +..+.........+++++||++|.|+
T Consensus 153 ~~~~~~~~~~~-i~~~l~~~~~~~~~ii~vSA~~g~gI 189 (411)
T PRK04000 153 SKERALENYEQ-IKEFVKGTVAENAPIIPVSALHKVNI 189 (411)
T ss_pred cchhHHHHHHH-HHHHhccccCCCCeEEEEECCCCcCH
Confidence 75433221111 11111100122457899999999887
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-12 Score=121.46 Aligned_cols=129 Identities=16% Similarity=0.261 Sum_probs=78.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+|+|.+|+||||++|.|+|.+.+....+..+.|........ .+.+ +
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~---------------------~~~g-----------~ 49 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG---------------------EVDG-----------R 49 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE---------------------EETT-----------E
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee---------------------eecc-----------e
Confidence 6999999999999999999999976544434343333221100 1111 5
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEcCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLNKAD 212 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlNK~D 212 (551)
.+++|||||+.+..........++.+.+.......|++|+|++.. .++..+...++.+.. .-+.++||++.+|
T Consensus 50 ~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 50 QVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp EEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred EEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 699999999976432211111112222223346799999999988 578888888877763 3456999999999
Q ss_pred CCCHHHHH
Q psy11743 213 MVDHQQLM 220 (551)
Q Consensus 213 l~~~~~~~ 220 (551)
...+..+.
T Consensus 128 ~~~~~~~~ 135 (212)
T PF04548_consen 128 ELEDDSLE 135 (212)
T ss_dssp GGTTTTHH
T ss_pred ccccccHH
Confidence 88765433
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=111.71 Aligned_cols=143 Identities=24% Similarity=0.357 Sum_probs=89.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc--ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT--DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt--~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+++|..+||||||+++|.+..+. ....+|. +........+ + .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~----------------~---------------~ 46 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP---ENYIPTIGIDSYSKEVSID----------------G---------------K 46 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT---SSSETTSSEEEEEEEEEET----------------T---------------E
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc---ccccccccccccccccccc----------------c---------------c
Confidence 5899999999999999999998753 2233332 1111100000 0 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~D 212 (551)
.-.+.++||+|... +.......+.++|++++++|..+.........|+..+. ..+.|+++|.||.|
T Consensus 47 ~~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 47 PVNLEIWDTSGQER-----------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp EEEEEEEEETTSGG-----------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT
T ss_pred cccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence 03489999999653 44455667899999999999986222222234554443 23579999999999
Q ss_pred CCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.....+.. ......... . .+.+.+||+++.++
T Consensus 116 ~~~~~~v~~~~~~~~~~~~------~-~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 116 LSDEREVSVEEAQEFAKEL------G-VPYFEVSAKNGENV 149 (162)
T ss_dssp GGGGSSSCHHHHHHHHHHT------T-SEEEEEBTTTTTTH
T ss_pred ccccccchhhHHHHHHHHh------C-CEEEEEECCCCCCH
Confidence 876322211 111111111 1 46788999998887
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-11 Score=120.22 Aligned_cols=135 Identities=19% Similarity=0.165 Sum_probs=90.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc----CCC-----------CCCCCCC---CccceEEEEEeCCCccccCCCCccccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER----DFP-----------GIHIGPE---PTTDRFIAVMYDEREGSVPFSPLDKFG 116 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~----~~~-----------~~~~~~~---~tt~~~~~i~~~~~~~~i~g~~~~~~~ 116 (551)
....|+++|+.++|||||||+|.+. +.. .+...++ .||+...+ |.
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfv----------P~------- 78 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFV----------PN------- 78 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccc----------cC-------
Confidence 5578999999999999999999998 555 4566677 66666421 11
Q ss_pred ccccccccceeEEecCCCCccCeEEEeCCCCCCCcccccccc--------------cchHH----HHHHHHh-ccCEEEE
Q psy11743 117 KFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRG--------------YDFTG----VLEWFAE-RVDRIIL 177 (551)
Q Consensus 117 ~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~--------------~~~~~----~~~~~~~-~aD~il~ 177 (551)
.-..+.....+--.+.+|||+|+.....-...+. .-|.. -++..+. .+|+.|+
T Consensus 79 --------kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgiv 150 (492)
T TIGR02836 79 --------EAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVV 150 (492)
T ss_pred --------cceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEE
Confidence 0111111112224699999999986422111110 01111 1556676 9999999
Q ss_pred EE-eCC-----CCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 178 LF-DAH-----KLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 178 Vv-Da~-----~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
|. |++ ..+..+...+++..|++.++|+++|+||+|-.
T Consensus 151 VtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 151 VTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred EEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 99 874 11456677889999999999999999999944
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-12 Score=110.32 Aligned_cols=112 Identities=25% Similarity=0.428 Sum_probs=65.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
+|+|+|..|||||||+++|++............+..... ..... +. .
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~----~---------- 49 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-----------------GD----R---------- 49 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-----------------TE----E----------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-----------------CC----c----------
Confidence 589999999999999999999886300011111111111 00000 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---h--CCCCcEEEEEcC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---R--GHDDKIRIVLNK 210 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~--~~~~~vilVlNK 210 (551)
..+.++|++|... +......++..+|++++|+|.++........+++.++ . ..+.|+++|.||
T Consensus 50 -~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK 117 (119)
T PF08477_consen 50 -QSLQFWDFGGQEE-----------FYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNK 117 (119)
T ss_dssp -EEEEEEEESSSHC-----------HHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-
T ss_pred -eEEEEEecCccce-----------ecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEec
Confidence 2378999999854 2222333478999999999998622112222333333 3 245999999999
Q ss_pred CC
Q psy11743 211 AD 212 (551)
Q Consensus 211 ~D 212 (551)
.|
T Consensus 118 ~D 119 (119)
T PF08477_consen 118 SD 119 (119)
T ss_dssp TC
T ss_pred cC
Confidence 98
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=110.92 Aligned_cols=139 Identities=16% Similarity=0.237 Sum_probs=83.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+|+++|..|||||||+++++...+... ..|+...+. .+..+ |. .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~---~~~~~~~~~~~i~~~-----------------~~---------------~ 46 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL---ESPEGGRFKKEVLVD-----------------GQ---------------S 46 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC---CCCCccceEEEEEEC-----------------CE---------------E
Confidence 699999999999999999988765321 112211111 01000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~D 212 (551)
..+.++||+|... ..+...+|++++|+|.++.........++..+.. .+.|+++|.||+|
T Consensus 47 ~~l~i~D~~g~~~----------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~D 110 (158)
T cd04103 47 HLLLIRDEGGAPD----------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDA 110 (158)
T ss_pred EEEEEEECCCCCc----------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHH
Confidence 2378999999853 1134679999999999863222232455555542 3579999999999
Q ss_pred CCC--HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVD--HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~--~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.. ...+.......+.. .....+.+.+||++|.|+
T Consensus 111 l~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 111 ISESNPRVIDDARARQLCA-----DMKRCSYYETCATYGLNV 147 (158)
T ss_pred hhhcCCcccCHHHHHHHHH-----HhCCCcEEEEecCCCCCH
Confidence 842 22222111111111 111235678999999988
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=114.82 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=89.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+|+++|..+||||||++++++..+. ..+.+|..... .+.+... . +..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~---~~~~~Tig~~~~~k~~~~~~~--~-------------------------~~~ 51 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL---GRPSWTVGCSVDVKHHTYKEG--T-------------------------PEE 51 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCCCcceeeeEEEEEEEEcCC--C-------------------------CCC
Confidence 6999999999999999999998753 23334432111 1111100 0 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---------------
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--------------- 199 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--------------- 199 (551)
..-.+.+|||+|... +......++.++|++|+|+|.++.........|+..+..
T Consensus 52 ~~~~l~IwDtaG~e~-----------~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 52 KTFFVELWDVGGSES-----------VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred cEEEEEEEecCCchh-----------HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 002488999999864 555666788999999999999863222233455554432
Q ss_pred -------CCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 200 -------HDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 200 -------~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.|+++|.||+|+.+........ ...+.+.+......+.+.+++.....+
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~--~~~~~~~ia~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEKESSGNL--VLTARGFVAEQGNAEEINLNCTNGRLL 178 (202)
T ss_pred cccccCCCCceEEEEEECccchhhcccchHH--HhhHhhhHHHhcCCceEEEecCCcccc
Confidence 257999999999997643211100 000111122223345667777665554
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=114.15 Aligned_cols=151 Identities=18% Similarity=0.260 Sum_probs=98.6
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
+.+..++|+++|.++||||-|+.+++..++. ....+| +.+........+.|..
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~---~~SksT----IGvef~t~t~~vd~k~-------------------- 62 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFS---LESKST----IGVEFATRTVNVDGKT-------------------- 62 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccC---cccccc----eeEEEEeeceeecCcE--------------------
Confidence 5567789999999999999999999988763 111112 1111111111111111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCCh-HHHHHHHHHhCC---CCcEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD-EFRRSIEALRGH---DDKIRIV 207 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~-~~~~~l~~l~~~---~~~vilV 207 (551)
-...||||+|... |+..+..+.+.|-.+++|.|.++ ..+. ....|+..|+.+ ++++++|
T Consensus 63 -----vkaqIWDTAGQER-----------yrAitSaYYrgAvGAllVYDITr-~~Tfenv~rWL~ELRdhad~nivimLv 125 (222)
T KOG0087|consen 63 -----VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITR-RQTFENVERWLKELRDHADSNIVIMLV 125 (222)
T ss_pred -----EEEeeecccchhh-----------hccccchhhcccceeEEEEechh-HHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 2478999999876 67778888999999999999985 3333 336777777754 6789999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.||+||.+.+.+...-...+. .......+.+||+.+.++
T Consensus 126 GNK~DL~~lraV~te~~k~~A------e~~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 126 GNKSDLNHLRAVPTEDGKAFA------EKEGLFFLETSALDATNV 164 (222)
T ss_pred ecchhhhhccccchhhhHhHH------HhcCceEEEecccccccH
Confidence 999999863322111112221 112235577999988887
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-11 Score=125.48 Aligned_cols=148 Identities=20% Similarity=0.228 Sum_probs=97.4
Q ss_pred HHhccCEEEEEEeCCCCCCCh-HHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 168 FAERVDRIILLFDAHKLDISD-EFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~-~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
.+.++|.+++|+++. +++.. ....++..+...+.+.++|+||+|+.++.+ +.. ..+..+ ....+++++|+
T Consensus 109 iaANvD~vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~-~~~~~~-----~~g~~Vi~vSa 179 (356)
T PRK01889 109 IAANVDTVFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKI-AEVEAL-----APGVPVLAVSA 179 (356)
T ss_pred EEEeCCEEEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHH-HHHHHh-----CCCCcEEEEEC
Confidence 358999999999997 36665 445777777788899999999999987522 111 112112 23457889999
Q ss_pred cCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHH
Q psy11743 247 FWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYL 326 (551)
Q Consensus 247 ~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l 326 (551)
.++.++ ++|...+ . ..-+++++|.+|+||||++|.|
T Consensus 180 ~~g~gl-------------~~L~~~L----------------~---------------~g~~~~lvG~sgvGKStLin~L 215 (356)
T PRK01889 180 LDGEGL-------------DVLAAWL----------------S---------------GGKTVALLGSSGVGKSTLVNAL 215 (356)
T ss_pred CCCccH-------------HHHHHHh----------------h---------------cCCEEEEECCCCccHHHHHHHH
Confidence 988776 3444333 1 1347999999999999999999
Q ss_pred HhCCCC--c-cccc--CCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 327 LERDFP--G-IHIG--PEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 327 ~~~~~~--~-~~v~--~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
++..-. | +... ....+|+...+..-.....++||||+.....
T Consensus 216 ~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l 262 (356)
T PRK01889 216 LGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQL 262 (356)
T ss_pred HHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhcc
Confidence 987421 1 1111 1122444333333333456889999987654
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=124.22 Aligned_cols=152 Identities=24% Similarity=0.312 Sum_probs=107.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.++|.|.|+|+-..|||||+.+|-+..++... .+--|..+-+ | .+.+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGA--------------------F---------~V~~p~ 199 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGA--------------------F---------TVTLPS 199 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhh--cCCccceece--------------------E---------EEecCC
Confidence 46799999999999999999999988764211 1111111100 1 112222
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
. +.++|+||||+.. |..+-.+-+.-+|++++|+.+.+ +..++..+.+...+..+.|+++.+||||.
T Consensus 200 G--~~iTFLDTPGHaA-----------F~aMRaRGA~vtDIvVLVVAadD-GVmpQT~EaIkhAk~A~VpiVvAinKiDk 265 (683)
T KOG1145|consen 200 G--KSITFLDTPGHAA-----------FSAMRARGANVTDIVVLVVAADD-GVMPQTLEAIKHAKSANVPIVVAINKIDK 265 (683)
T ss_pred C--CEEEEecCCcHHH-----------HHHHHhccCccccEEEEEEEccC-CccHhHHHHHHHHHhcCCCEEEEEeccCC
Confidence 2 7799999999975 56555666788999999999997 99999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
... ..+++..++. +.|.... -..++++.+||++|.|+
T Consensus 266 p~a-~pekv~~eL~-~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 266 PGA-NPEKVKRELL-SQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred CCC-CHHHHHHHHH-HcCccHHHcCCceeEEEeecccCCCh
Confidence 642 2223332222 2333211 12468899999999998
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=123.44 Aligned_cols=172 Identities=20% Similarity=0.238 Sum_probs=104.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCC----------CCCCCCCccceEEEEEeCCCccccCCCCcc-cccccccccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPG----------IHIGPEPTTDRFIAVMYDEREGSVPFSPLD-KFGKFGNSFL 123 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~----------~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~-~~~~~g~~~~ 123 (551)
....++++|+..+|||||+-+|+=+--.. .....+..+-.+.+++....+..-.|..++ ....|-
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe---- 81 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE---- 81 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee----
Confidence 34679999999999999999998532100 001122233356666554433222222221 111111
Q ss_pred cceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC------CChHHHHHHHHH
Q psy11743 124 NRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD------ISDEFRRSIEAL 197 (551)
Q Consensus 124 ~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~------~~~~~~~~l~~l 197 (551)
.+. ..++|+||||+.+ |...+..-+.+||+.++|+|++... ...+.++.+-.+
T Consensus 82 ---------t~k-~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La 140 (428)
T COG5256 82 ---------TDK-YNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA 140 (428)
T ss_pred ---------cCC-ceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHH
Confidence 110 3599999999765 6777777789999999999999621 555665655555
Q ss_pred hCCC-CcEEEEEcCCCCCCH-HHHHH----HHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 198 RGHD-DKIRIVLNKADMVDH-QQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 198 ~~~~-~~vilVlNK~Dl~~~-~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
+-.+ ..+|+++||+|+++- ++..+ ....+....|+ .....+.+++|++.|.++.
T Consensus 141 ~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~--~~~~v~FIPiSg~~G~Nl~ 200 (428)
T COG5256 141 RTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGY--NPKDVPFIPISGFKGDNLT 200 (428)
T ss_pred HhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCC--CccCCeEEecccccCCccc
Confidence 5444 458999999999852 22222 22223333444 2224678999999999984
|
|
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=104.25 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=97.6
Q ss_pred ccccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 50 DADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 50 ~~~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
++.++..++++|+|..++|||||+-+.++..+.. .+.. .+|..|..+. +
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~----------afvs-------------------TvGidFKvKT--v 63 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS----------AFVS-------------------TVGIDFKVKT--V 63 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhcccccc----------ceee-------------------eeeeeEEEeE--e
Confidence 4566777899999999999999999999887632 1100 0111111110 0
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRI 206 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vil 206 (551)
..+.---.+.++||+|.+. +...+..++++|+.+++++|.++.........+.-.++ ..+.++|+
T Consensus 64 -yr~~kRiklQiwDTagqEr-----------yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvil 131 (193)
T KOG0093|consen 64 -YRSDKRIKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVIL 131 (193)
T ss_pred -eecccEEEEEEEecccchh-----------hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEE
Confidence 0000013589999999875 56778888999999999999986333333345555554 34789999
Q ss_pred EEcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.||||+-+++.+. +.-......||+ ..+..||+.+.++
T Consensus 132 vgnKCDmd~eRvis~e~g~~l~~~LGf-------efFEtSaK~NinV 171 (193)
T KOG0093|consen 132 VGNKCDMDSERVISHERGRQLADQLGF-------EFFETSAKENINV 171 (193)
T ss_pred EecccCCccceeeeHHHHHHHHHHhCh-------HHhhhcccccccH
Confidence 99999997654321 111223334555 2234788877776
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-11 Score=113.79 Aligned_cols=147 Identities=15% Similarity=0.172 Sum_probs=82.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
-+|+|+|.+|+|||||+++|+...+.. ...+|.. .+..-. .+.+ .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~---~~~~t~~~~~~~~~------------------------------~~~~-~ 47 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE---EYHPTVFENYVTDC------------------------------RVDG-K 47 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---ccCCcccceEEEEE------------------------------EECC-E
Confidence 379999999999999999998665421 2222211 111000 0000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlNK~D 212 (551)
...+.++||||.... .......+..+|++++++|..+....... ..++..+.. ...|+++|.||+|
T Consensus 48 ~~~l~i~Dt~g~~~~-----------~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~D 116 (187)
T cd04129 48 PVQLALWDTAGQEEY-----------ERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKD 116 (187)
T ss_pred EEEEEEEECCCChhc-----------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 034789999997541 11112245789999999999752211121 235555542 3689999999999
Q ss_pred CCCHHH---------HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQ---------LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~---------~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+... .........+.. .....+.+.+||++|.|+
T Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 117 LRQDAVAKEEYRTQRFVPIQQGKRVAK----EIGAKKYMECSALTGEGV 161 (187)
T ss_pred hhhCcccccccccCCcCCHHHHHHHHH----HhCCcEEEEccCCCCCCH
Confidence 853110 000001111111 111235678999999998
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=104.67 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=100.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-.++|++||..|+|||.|+.+++..-+ +.+.+.|-..--.|.. ++..|..
T Consensus 6 flfkivlvgnagvgktclvrrftqglf---ppgqgatigvdfmikt--------------vev~gek------------- 55 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIKT--------------VEVNGEK------------- 55 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCC---CCCCCceeeeeEEEEE--------------EEECCeE-------------
Confidence 457899999999999999999998765 4455444221111100 0001100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
-++.||||+|... |.+.++.+.+.|+++++|.|.+..+..+-..+|++.+.. ...--|+|.||+
T Consensus 56 --iklqiwdtagqer-----------frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~ 122 (213)
T KOG0095|consen 56 --IKLQIWDTAGQER-----------FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKI 122 (213)
T ss_pred --EEEEEeeccchHH-----------HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeecccc
Confidence 3589999999875 888999999999999999999853444444566666653 234467899999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..++-+.+...|.... ....+.+||+...++
T Consensus 123 d~~drrevp~qigeefs~~q------dmyfletsakea~nv 157 (213)
T KOG0095|consen 123 DLADRREVPQQIGEEFSEAQ------DMYFLETSAKEADNV 157 (213)
T ss_pred chhhhhhhhHHHHHHHHHhh------hhhhhhhcccchhhH
Confidence 99987776655665554322 223345788776666
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=117.79 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=64.0
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccc--cccccccceeEEecCCCCc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK--FGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~--~g~~~~~~~~~~~~~~~~l 136 (551)
|+++|.+|||||||+|+|++... .+..-|.+|.+....+.+.... .+...++.+.. +|. ..+..-.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~--~~~~r~~~~~~~~~~~---------~~~~~~~ 68 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVE--CPCKELGVSCNPRYGK---------CIDGKRY 68 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecC--CCchhhhhhhcccccc---------cccCcCc
Confidence 57999999999999999999874 3455555555665544432110 01111111100 000 0011011
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
..+.++||||+..+.. .+..+.......+.+||++++|+|+.
T Consensus 69 v~i~l~D~aGlv~ga~----~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 69 VPVELIDVAGLVPGAH----EGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ceEEEEECCCCCCCcc----chhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3489999999975432 12224445556789999999999997
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=111.26 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=44.4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhC--CCCcEEEEEcCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRG--HDDKIRIVLNKADM 213 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~--~~~~vilVlNK~Dl 213 (551)
.+.+|||+|.... + ...++.++|++++|+|..+ .-+... . .|+..++. .+.|+++|.||+|+
T Consensus 67 ~l~iwDTaG~~~~----------~---~~~~~~~ad~iilv~d~t~-~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL 132 (195)
T cd01873 67 SLRLWDTFGDHDK----------D---RRFAYGRSDVVLLCFSIAS-PNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred EEEEEeCCCChhh----------h---hcccCCCCCEEEEEEECCC-hhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 4899999998641 1 1225689999999999986 323222 2 35555543 36799999999998
Q ss_pred CC
Q psy11743 214 VD 215 (551)
Q Consensus 214 ~~ 215 (551)
.+
T Consensus 133 ~~ 134 (195)
T cd01873 133 RY 134 (195)
T ss_pred cc
Confidence 64
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=110.36 Aligned_cols=146 Identities=21% Similarity=0.231 Sum_probs=85.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+++|.+|||||||+++++...+. ....||...-. ....... .+.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~---~~~~~t~~~~~~~~~~~~~--------------~~~------------ 57 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFE---KKYIPTLGVEVHPLKFYTN--------------CGP------------ 57 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEEEC--------------CeE------------
Confidence 45689999999999999999877765532 11222221110 0000000 000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHh--CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALR--GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~--~~~~~vilVlN 209 (551)
..+.++||||... +......+...+|++++|+|.++ ..+.. ...++..+. ..+.|+++|+|
T Consensus 58 ----i~i~~~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~i~lv~n 121 (215)
T PTZ00132 58 ----ICFNVWDTAGQEK-----------FGGLRDGYYIKGQCAIIMFDVTS-RITYKNVPNWHRDIVRVCENIPIVLVGN 121 (215)
T ss_pred ----EEEEEEECCCchh-----------hhhhhHHHhccCCEEEEEEECcC-HHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3488999999653 33344556778999999999985 22221 123333332 23678999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+.. ...... ....+.+||++|.++
T Consensus 122 K~Dl~~~~~~~~~~-~~~~~~-------~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 122 KVDVKDRQVKARQI-TFHRKK-------NLQYYDISAKSNYNF 156 (215)
T ss_pred CccCccccCCHHHH-HHHHHc-------CCEEEEEeCCCCCCH
Confidence 99986432111111 111111 124578999988887
|
|
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=101.86 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=98.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++++++|+.|+|||.|+..++...+. +...- .+.+..+..-..+.|+
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfk---DdssH----TiGveFgSrIinVGgK------------------------ 56 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFK---DDSSH----TIGVEFGSRIVNVGGK------------------------ 56 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhc---ccccc----eeeeeecceeeeecCc------------------------
Confidence 4578999999999999999999988752 11111 1122222111111110
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
.-++.||||+|... |..+++.+...|...++|.|+++.+.......|+..++ ..++-++++.||.
T Consensus 57 -~vKLQIWDTAGQEr-----------FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKk 124 (214)
T KOG0086|consen 57 -TVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKK 124 (214)
T ss_pred -EEEEEEeecccHHH-----------HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChh
Confidence 03588999999875 89999999999999999999986333333344554443 3456688899999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+-+..++.-.-...|. .........+||++|.++
T Consensus 125 DL~~~R~VtflEAs~Fa------qEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 125 DLDPEREVTFLEASRFA------QENELMFLETSALTGENV 159 (214)
T ss_pred hcChhhhhhHHHHHhhh------cccceeeeeecccccccH
Confidence 99876654322223332 333445567899999998
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=121.44 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=102.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCC--------CCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPG--------IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRF 126 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~--------~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~ 126 (551)
....++||-+...|||||..+|+...-.+ +-+.-+..+.|-+.|. .+.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIk------------------------aQt 114 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIK------------------------AQT 114 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEE------------------------eee
Confidence 34579999999999999999999754211 0111111122211111 010
Q ss_pred eEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEE
Q psy11743 127 QCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRI 206 (551)
Q Consensus 127 ~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vil 206 (551)
..+...+....-+.+|||||+.+ |...+.+.+.-||.+|+|+||.+ +...+....+....+.+..+|.
T Consensus 115 asify~~~~~ylLNLIDTPGHvD-----------Fs~EVsRslaac~G~lLvVDA~q-GvqAQT~anf~lAfe~~L~iIp 182 (650)
T KOG0462|consen 115 ASIFYKDGQSYLLNLIDTPGHVD-----------FSGEVSRSLAACDGALLVVDASQ-GVQAQTVANFYLAFEAGLAIIP 182 (650)
T ss_pred eEEEEEcCCceEEEeecCCCccc-----------ccceehehhhhcCceEEEEEcCc-CchHHHHHHHHHHHHcCCeEEE
Confidence 00101111112389999999987 55556667789999999999997 8888876666666678899999
Q ss_pred EEcCCCCCCH--HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDH--QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~--~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+... +.+.......| ..+..+++++||++|.++
T Consensus 183 VlNKIDlp~adpe~V~~q~~~lF-------~~~~~~~i~vSAK~G~~v 223 (650)
T KOG0462|consen 183 VLNKIDLPSADPERVENQLFELF-------DIPPAEVIYVSAKTGLNV 223 (650)
T ss_pred eeeccCCCCCCHHHHHHHHHHHh-------cCCccceEEEEeccCccH
Confidence 9999999753 33333333333 556678999999999998
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=7e-11 Score=104.27 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=93.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|++||.+|||||||+-+++...+-. ..|+|- .+...-....+.| ..
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~----~~~~tI---GvDFkvk~m~vdg----------~~------------ 59 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD----LHPTTI---GVDFKVKVMQVDG----------KR------------ 59 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc----cCCcee---eeeEEEEEEEEcC----------ce------------
Confidence 445899999999999999999999876522 122221 1111000011111 10
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
.++.||||+|... |...+..+.+.|..+|+|.|.+..+.......|+..+. +.+.-.++|.|
T Consensus 60 ---~KlaiWDTAGqEr-----------FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgN 125 (209)
T KOG0080|consen 60 ---LKLAIWDTAGQER-----------FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGN 125 (209)
T ss_pred ---EEEEEEeccchHh-----------hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcc
Confidence 3589999999875 77778889999999999999985222222234444443 33455788999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|.-....+.+.-.-.|.+ ......+.+||++..++
T Consensus 126 KiDkes~R~V~reEG~kfAr------~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 126 KIDKESERVVDREEGLKFAR------KHRCLFIECSAKTRENV 162 (209)
T ss_pred cccchhcccccHHHHHHHHH------hhCcEEEEcchhhhccH
Confidence 99976444333322222221 12234567899998887
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.4e-11 Score=108.97 Aligned_cols=115 Identities=29% Similarity=0.358 Sum_probs=65.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+.|+|+|+.|+|||+|+..|.........++.++. .... ++.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n----~~~~-------------------------------~~~~ 46 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENN----IAYN-------------------------------VNNS 46 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEE----EECC-------------------------------GSST
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCC----ceEE-------------------------------eecC
Confidence 3578999999999999999999988543221111111 0100 0111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHH--HHhccCEEEEEEeCCCCCCChHHHHHHHHHh---------CCCCc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW--FAERVDRIILLFDAHKLDISDEFRRSIEALR---------GHDDK 203 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~--~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---------~~~~~ 203 (551)
--..+.+||+||+..-. ...... ....+.+|+||+|+.. ......+.++.|. ....|
T Consensus 47 ~~~~~~lvD~PGH~rlr----------~~~~~~~~~~~~~k~IIfvvDSs~--~~~~~~~~Ae~Ly~iL~~~~~~~~~~p 114 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLR----------SKLLDELKYLSNAKGIIFVVDSST--DQKELRDVAEYLYDILSDTEVQKNKPP 114 (181)
T ss_dssp CGTCECEEEETT-HCCC----------HHHHHHHHHHGGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHCCTT--E
T ss_pred CCCEEEEEECCCcHHHH----------HHHHHhhhchhhCCEEEEEEeCcc--chhhHHHHHHHHHHHHHhhhhccCCCC
Confidence 11569999999997621 112222 5789999999999973 2233333333332 35788
Q ss_pred EEEEEcCCCCCCH
Q psy11743 204 IRIVLNKADMVDH 216 (551)
Q Consensus 204 vilVlNK~Dl~~~ 216 (551)
++|+.||.|+...
T Consensus 115 iLIacNK~Dl~~A 127 (181)
T PF09439_consen 115 ILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEE-TTSTT-
T ss_pred EEEEEeCcccccc
Confidence 9999999999863
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=116.51 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=80.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE---EEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~---~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
....+|+|+|..|||||||+++|++..+. ....+|.... ..+.++....... .+. +
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~---~~~~pTIG~d~~ik~I~~~~~~~~~~-----~ik--~----------- 77 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSI---ARPPQTIGCTVGVKHITYGSPGSSSN-----SIK--G----------- 77 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcc---cccCCceeeeEEEEEEEECCcccccc-----ccc--c-----------
Confidence 45689999999999999999999987652 2233332111 1112211000000 000 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC----------
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---------- 200 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---------- 200 (551)
+....-.+.||||+|... +......++.++|++|+|+|.++.........|++.+...
T Consensus 78 -d~~k~v~LqIWDTAGqEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~ 145 (334)
T PLN00023 78 -DSERDFFVELWDVSGHER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSG 145 (334)
T ss_pred -cCCceEEEEEEECCCChh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccc
Confidence 000002388999999864 5666677889999999999998632222334555555432
Q ss_pred -----CCcEEEEEcCCCCCCH
Q psy11743 201 -----DDKIRIVLNKADMVDH 216 (551)
Q Consensus 201 -----~~~vilVlNK~Dl~~~ 216 (551)
..|++||.||+|+...
T Consensus 146 ~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 146 GPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred cccCCCCcEEEEEECcccccc
Confidence 3689999999999753
|
|
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=101.86 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=94.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..+|+++|..|+||||++++|++.+.. ...||.- .+..+.+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~----~i~pt~gf~Iktl~~~~------------------------------- 59 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD----TISPTLGFQIKTLEYKG------------------------------- 59 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc----ccCCccceeeEEEEecc-------------------------------
Confidence 3578999999999999999999998832 1122211 111111111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlN 209 (551)
..+.++|-.|... +.+....+.+.+|++++|+|.++.....+....+..+ +-.+.|++++.|
T Consensus 60 ---~~L~iwDvGGq~~-----------lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlan 125 (185)
T KOG0073|consen 60 ---YTLNIWDVGGQKT-----------LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLAN 125 (185)
T ss_pred ---eEEEEEEcCCcch-----------hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEe
Confidence 4589999999865 5677788999999999999997522222223333322 235789999999
Q ss_pred CCCCCCH---HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDH---QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~---~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.|+... +++..+. .+..+......+++-+|+.+|.++
T Consensus 126 k~dl~~~l~~~~i~~~~-----~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 126 KQDLPGALSLEEISKAL-----DLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred cCcCccccCHHHHHHhh-----CHHHhccccCceEEEEeccccccH
Confidence 9999742 3322211 122222344567889999998876
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=102.69 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=98.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCC-----CCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeE
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGI-----HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQC 128 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~-----~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~ 128 (551)
+...+|+|+|+.++||||++.++.......+ .......+...++.. ||.....
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D------------------~g~~~~~---- 65 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMD------------------FGSIELD---- 65 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeec------------------ccceEEc----
Confidence 4568999999999999999999998763211 112211111112222 2221111
Q ss_pred EecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEE
Q psy11743 129 SLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIV 207 (551)
Q Consensus 129 ~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilV 207 (551)
.+ ..+.++||||+.. |.-.+....++++.+++++|.+. +.+.....+++.+.... .|+++.
T Consensus 66 ----~~--~~v~LfgtPGq~R-----------F~fm~~~l~~ga~gaivlVDss~-~~~~~a~~ii~f~~~~~~ip~vVa 127 (187)
T COG2229 66 ----ED--TGVHLFGTPGQER-----------FKFMWEILSRGAVGAIVLVDSSR-PITFHAEEIIDFLTSRNPIPVVVA 127 (187)
T ss_pred ----Cc--ceEEEecCCCcHH-----------HHHHHHHHhCCcceEEEEEecCC-CcchHHHHHHHHHhhccCCCEEEE
Confidence 11 3589999999975 66667777899999999999996 66666678888877666 999999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||.|+.+...... +...+. +.. -..|++.++|..+.+.
T Consensus 128 ~NK~DL~~a~ppe~-i~e~l~-~~~----~~~~vi~~~a~e~~~~ 166 (187)
T COG2229 128 INKQDLFDALPPEK-IREALK-LEL----LSVPVIEIDATEGEGA 166 (187)
T ss_pred eeccccCCCCCHHH-HHHHHH-hcc----CCCceeeeecccchhH
Confidence 99999985422212 122221 111 2457777888766655
|
|
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-11 Score=107.79 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=90.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|.++|.+|||||||+|+++..++... ...| .|..|+.+- ++++ +
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~q---ykaT--------------------------IgadFltKe--v~Vd-~ 55 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQ---YKAT--------------------------IGADFLTKE--VQVD-D 55 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHH---hccc--------------------------cchhheeeE--EEEc-C
Confidence 457999999999999999999999876311 0001 111111111 1111 1
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHH----HHHHhC---CCCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRS----IEALRG---HDDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~----l~~l~~---~~~~vilV 207 (551)
-.-.+.||||+|... |.+.-..+.+.||++++|+|...+........| +..... ...|.+++
T Consensus 56 ~~vtlQiWDTAGQER-----------FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVil 124 (210)
T KOG0394|consen 56 RSVTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVIL 124 (210)
T ss_pred eEEEEEEEecccHHH-----------hhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEE
Confidence 113478999999875 555556677999999999998853222222223 222221 24689999
Q ss_pred EcCCCCCCH--HHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDH--QQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~--~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.||+|.-.. ..+ ......++.+.| ..|.+.+||+.+.++
T Consensus 125 GNKiD~~~~~~r~VS~~~Aq~WC~s~g------nipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 125 GNKIDVDGGKSRQVSEKKAQTWCKSKG------NIPYFETSAKEATNV 166 (210)
T ss_pred cccccCCCCccceeeHHHHHHHHHhcC------CceeEEecccccccH
Confidence 999999652 111 222223332222 457788999988887
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=123.78 Aligned_cols=136 Identities=23% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC--CccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE--PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~--~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.....|+|+|++++|||||+++|+...-.+...+.. -.+.+.+...+...+. ..|.+.... .+.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~-----------~rgisi~~~--~~~~ 75 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEK-----------QRGISITTS--VMQF 75 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHH-----------hcCCcEEEE--EEEE
Confidence 456789999999999999999997533111111100 0000111100110000 001100000 0011
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
+.. -..+.+|||||+.+ |...+..++..+|++|+|+|+.. ++..+...+++.++..+.|+++++||+
T Consensus 76 ~~~-~~~inliDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~~PiivviNKi 142 (527)
T TIGR00503 76 PYR-DCLVNLLDTPGHED-----------FSEDTYRTLTAVDNCLMVIDAAK-GVETRTRKLMEVTRLRDTPIFTFMNKL 142 (527)
T ss_pred eeC-CeEEEEEECCChhh-----------HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEECc
Confidence 100 04589999999954 66677788899999999999986 777777778887777889999999999
Q ss_pred CCCC
Q psy11743 212 DMVD 215 (551)
Q Consensus 212 Dl~~ 215 (551)
|+..
T Consensus 143 D~~~ 146 (527)
T TIGR00503 143 DRDI 146 (527)
T ss_pred cccC
Confidence 9863
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=123.65 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=72.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CC------hHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-IS------DEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~------~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+++|||||+.+ |...+...+..+|++++|+|+.. + +. .+..+.+..+...+.| +++++
T Consensus 85 ~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 85 YYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 4689999999865 78888888999999999999986 4 21 4555666666667775 68899
Q ss_pred cCCCCCCH----HHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMVDH----QQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~~~----~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|+.+. ... .+.+...+...++ .....+++++||++|.|+.
T Consensus 153 NKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~--~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 153 NKMDATTPKYSKARYDEIVKEVSSYLKKVGY--NPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred EcccCCchhhhHHHHHHHHHHHHHHHHHcCC--CcccceEEEEecccccccc
Confidence 99998631 111 2223333333343 2223578999999999883
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=103.43 Aligned_cols=151 Identities=17% Similarity=0.261 Sum_probs=97.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+++.+||.+-||||+|+.+++..+++.++ .|| . |..|..++.++. .
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaels---dpt----v----------------------gvdffarlie~~--p 54 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELS---DPT----V----------------------GVDFFARLIELR--P 54 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccC---CCc----c----------------------chHHHHHHHhcC--C
Confidence 34578999999999999999999998876553 222 1 111111111110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-C---CCc-EEEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-H---DDK-IRIVL 208 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~---~~~-vilVl 208 (551)
..--++.+|||+|... |.+.++.+..++-.+++|+|.++-...+....|+..... . .++ ..+|.
T Consensus 55 g~riklqlwdtagqer-----------frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVG 123 (213)
T KOG0091|consen 55 GYRIKLQLWDTAGQER-----------FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVG 123 (213)
T ss_pred CcEEEEEEeeccchHH-----------HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEec
Confidence 1113589999999875 888999999999999999999863222333444443321 1 222 56788
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.|+|+....++...-++.+. .......+.+||++|.++
T Consensus 124 hKsDL~SqRqVt~EEaEklA------a~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 124 HKSDLQSQRQVTAEEAEKLA------ASHGMAFVETSAKNGCNV 161 (213)
T ss_pred cccchhhhccccHHHHHHHH------HhcCceEEEecccCCCcH
Confidence 99999876655333222221 223346788999999988
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=123.47 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=81.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+...+|+|+|++|+||||++|+|+|++.+.+......||. ...+.. . +.+
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~-~--------------------idG-------- 165 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEG-L--------------------VQG-------- 165 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEE-E--------------------ECC--------
Confidence 3446899999999999999999999986554433222333 221110 0 001
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRI 206 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vil 206 (551)
..+.+|||||+.+..... ....++.+.+..++. .+|++|+|+.........++..+++.+.. .-..+||
T Consensus 166 ---~~L~VIDTPGL~dt~~dq-~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIV 241 (763)
T TIGR00993 166 ---VKIRVIDTPGLKSSASDQ-SKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIV 241 (763)
T ss_pred ---ceEEEEECCCCCccccch-HHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEE
Confidence 459999999999753211 111223444544544 58999999876532333355566666642 2467999
Q ss_pred EEcCCCCCCH
Q psy11743 207 VLNKADMVDH 216 (551)
Q Consensus 207 VlNK~Dl~~~ 216 (551)
|++.+|.+++
T Consensus 242 VFThgD~lpp 251 (763)
T TIGR00993 242 TLTHAASAPP 251 (763)
T ss_pred EEeCCccCCC
Confidence 9999999963
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-10 Score=114.29 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC--C-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD--F-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~--~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.+..|+|+|.+|+|||||||+|.|-. - ...++|...||...+...+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~------------------------------- 82 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH------------------------------- 82 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-------------------------------
Confidence 35789999999999999999997632 1 1133343233333332221
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
|-..++++||.||+....-. ..+|.+.. -..+.|.+|++.+.+ ++..+..++..+++.++++.+|-+|+
T Consensus 83 --p~~pnv~lWDlPG~gt~~f~----~~~Yl~~~--~~~~yD~fiii~s~r---f~~ndv~La~~i~~~gK~fyfVRTKv 151 (376)
T PF05049_consen 83 --PKFPNVTLWDLPGIGTPNFP----PEEYLKEV--KFYRYDFFIIISSER---FTENDVQLAKEIQRMGKKFYFVRTKV 151 (376)
T ss_dssp --SS-TTEEEEEE--GGGSS------HHHHHHHT--TGGG-SEEEEEESSS-----HHHHHHHHHHHHTT-EEEEEE--H
T ss_pred --CCCCCCeEEeCCCCCCCCCC----HHHHHHHc--cccccCEEEEEeCCC---CchhhHHHHHHHHHcCCcEEEEEecc
Confidence 22246999999999763211 01122211 257899888887654 67888899999999999999999999
Q ss_pred CC-C-----------CHHHHHHHHHHH-HHHcccccCCCCceEEEecccCCCC
Q psy11743 212 DM-V-----------DHQQLMRVYGAL-MWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 212 Dl-~-----------~~~~~~~~~~~~-~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
|. + .++++.+.+... ...|.. .+.+.++++.+|++.-..
T Consensus 152 D~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k-~gv~~P~VFLVS~~dl~~ 203 (376)
T PF05049_consen 152 DSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK-AGVSEPQVFLVSSFDLSK 203 (376)
T ss_dssp HHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC-TT-SS--EEEB-TTTTTS
T ss_pred cccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH-cCCCcCceEEEeCCCccc
Confidence 96 1 122222222222 223332 245667888899875433
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=124.62 Aligned_cols=136 Identities=24% Similarity=0.210 Sum_probs=84.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC--CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP--EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~--~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.....|+|+|++|+|||||.++|+...-.+...+. +.++...+...+.+.+ .+.|.+.......+..
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E-----------~~rgiSi~~~~~~~~~ 76 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEME-----------KQRGISVTSSVMQFPY 76 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHH-----------HhhCCceeeeeEEEEE
Confidence 45678999999999999999999853211111110 0000111100000000 0011111111000100
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
.. ..+.+|||||+.+ |...+..++..+|++++|+|+.+ +...+...+++.+...+.|+++++||+
T Consensus 77 -~~--~~inliDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~iPiiv~iNK~ 141 (526)
T PRK00741 77 -RD--CLINLLDTPGHED-----------FSEDTYRTLTAVDSALMVIDAAK-GVEPQTRKLMEVCRLRDTPIFTFINKL 141 (526)
T ss_pred -CC--EEEEEEECCCchh-----------hHHHHHHHHHHCCEEEEEEecCC-CCCHHHHHHHHHHHhcCCCEEEEEECC
Confidence 01 4589999999865 56667778899999999999986 777777788888888899999999999
Q ss_pred CCCC
Q psy11743 212 DMVD 215 (551)
Q Consensus 212 Dl~~ 215 (551)
|+..
T Consensus 142 D~~~ 145 (526)
T PRK00741 142 DRDG 145 (526)
T ss_pred cccc
Confidence 9864
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-10 Score=115.53 Aligned_cols=167 Identities=25% Similarity=0.270 Sum_probs=108.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+||-+...|||||+..||.+.- +-...+....| +|...+-. .+.|...+.+...+..+.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSG--tf~~~e~v~ER---vMDSnDlE----------kERGITILaKnTav~~~~-- 67 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSG--TFREREEVAER---VMDSNDLE----------KERGITILAKNTAVNYNG-- 67 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhcc--ccccccchhhh---hcCccchh----------hhcCcEEEeccceeecCC--
Confidence 45799999999999999999998752 11111111111 11111100 011111111111111111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.||||||+.+ |-..+.+.+.-.|.+++++||.. +..++.+-+++.....+.+.|+|+||+|...
T Consensus 68 -~~INIvDTPGHAD-----------FGGEVERvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 68 -TRINIVDTPGHAD-----------FGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALALGLKPIVVINKIDRPD 134 (603)
T ss_pred -eEEEEecCCCcCC-----------ccchhhhhhhhcceEEEEEEccc-CCCCchhhhHHHHHHcCCCcEEEEeCCCCCC
Confidence 4699999999986 55567777889999999999997 8888887788877778899999999999975
Q ss_pred --HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 --HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 --~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++.+.+..-.+|-.++---..-..|++|-|+..|..-
T Consensus 135 Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 135 ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 3444444445666666533334568999999988743
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.1e-11 Score=108.75 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=90.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
+++|+++|.+|+||||++|+|.+.. ...++..+++|+. .....++..+.++||||..........+++|.. .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~---~ 76 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEE--RVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSV---L 76 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc--ceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHH---H
Confidence 6789999999999999999999886 3556777777752 234557777899999999877555555566542 1
Q ss_pred hhhhhccccCc-------cccc---------ccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH-
Q psy11743 383 RFQCSLVNSPV-------LKGK---------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR- 445 (551)
Q Consensus 383 ~~~~~~~~~~~-------~~~~---------~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~- 445 (551)
+....+..+|. ..+. .......+.++|+||||+... .....+.....+.+.++
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~ 146 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK----------DSKTMKEFKKEIRRKLPF 146 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc----------cHHHHHHHHHHHHhhccc
Confidence 22222233332 1111 112235677999999998211 00112223344444443
Q ss_pred -hccchhhh--ccchH-HHHHHHHHHH
Q psy11743 446 -KDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 446 -~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+.|++.+ +++.+ +++++.+..+
T Consensus 147 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 147 LDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 23455545 66776 7777766654
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-10 Score=115.75 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=66.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC-CC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS-PV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~-~~ 135 (551)
.+|+|||.||||||||+|+|++.+.. +..-|.+|.+....+.+.... ++...++.+. +.....+.. ..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~--~~~~r~~~~~--------~~~~~~~~~~~~ 70 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVE--CPCKELGVKC--------NPRNGKCIDGTR 70 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccC--Cchhhhhhhh--------ccccccccCCcc
Confidence 47999999999999999999998752 344566666666654442211 1110111000 000000000 01
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
.-.+.++||||+..+... +..+.......+++||++++|+|+.
T Consensus 71 ~~~i~i~D~aGl~~ga~~----g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHE----GRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeeEEEEEcCCcCCCccc----hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 134889999999764321 2224445556689999999999997
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-10 Score=128.00 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=86.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC--
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-- 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-- 132 (551)
....|+|+|+.++|||||+++|+...-.......+.++ ...+...+ .-.|.++. .....+...
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~----~~D~~~~E-~~rgiti~----------~~~~~~~~~~~ 82 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDAR----FTDTRADE-QERGITIK----------STGISLYYEHD 82 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCcee----ecccchhh-Hhhcceee----------ccceEEEeecc
Confidence 34589999999999999999999865322111111111 00111100 00010000 000000000
Q ss_pred -----CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEE
Q psy11743 133 -----SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIV 207 (551)
Q Consensus 133 -----~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilV 207 (551)
..--..++++||||+.+ |...+..++..+|++++|+|+.. ++..+...+++.+...++|++++
T Consensus 83 ~~~~~~~~~~~i~liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~~p~iv~ 150 (836)
T PTZ00416 83 LEDGDDKQPFLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVE-GVCVQTETVLRQALQERIRPVLF 150 (836)
T ss_pred cccccCCCceEEEEEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCC-CcCccHHHHHHHHHHcCCCEEEE
Confidence 00013489999999975 67778888999999999999996 88888888998888888999999
Q ss_pred EcCCCCC
Q psy11743 208 LNKADMV 214 (551)
Q Consensus 208 lNK~Dl~ 214 (551)
+||+|+.
T Consensus 151 iNK~D~~ 157 (836)
T PTZ00416 151 INKVDRA 157 (836)
T ss_pred EEChhhh
Confidence 9999997
|
|
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=115.33 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=116.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcc---ccCC--CCcc--ccccccc-------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG---SVPF--SPLD--KFGKFGN------- 120 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~---~i~g--~~~~--~~~~~g~------- 120 (551)
...+|+|.|++|+||||++|+++.+++ ++.+.++||..|..|...+... .++| ...+ .+...+.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~kl--LP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKL--LPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhh--CcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 457899999999999999999999997 6889999999998876543211 1233 0011 1110000
Q ss_pred ccccceeEEecCCC---Cc-cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH
Q psy11743 121 SFLNRFQCSLVNSP---VL-KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA 196 (551)
Q Consensus 121 ~~~~~~~~~~~~~~---~l-~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~ 196 (551)
.-......++.|.+ +| ..+.+||.||+.... +....+......+|++++|+.+.+ .++....+++..
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEn-tlt~sek~Ff~~ 256 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAEN-TLTLSEKQFFHK 256 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCcc-HhHHHHHHHHHH
Confidence 00111233444433 34 469999999998632 235556667789999999999997 788888888888
Q ss_pred HhCCCCcEEEEEcCCCCCCHH-HHHHHHHHHHHHccccc-CCCCceEEEecccC
Q psy11743 197 LRGHDDKIRIVLNKADMVDHQ-QLMRVYGALMWSLGKVL-QTPEVARVYIGSFW 248 (551)
Q Consensus 197 l~~~~~~vilVlNK~Dl~~~~-~~~~~~~~~~~~l~~l~-~~~~~~~v~iSa~~ 248 (551)
..+.+..+.|+.||||....+ +-++.+......|+-.. ......+.||||..
T Consensus 257 vs~~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 257 VSEEKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred hhccCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 776644577888999998542 22222222233333211 12233568888543
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-10 Score=127.06 Aligned_cols=187 Identities=12% Similarity=0.046 Sum_probs=111.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCC---CchhhhhhhH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQ---FRPLDKFGNS 379 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~---~~~~~~~~~~ 379 (551)
..+|+++|+||+||||++|.|.|.. ..+++.||+|. .....+++.++.++||||+.+-... .+.-++....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~---~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR---QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 4689999999999999999999887 47899999995 2335567888999999999875321 1222333333
Q ss_pred HHhhhhhhccccCcc--------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++. ...+|+. ......+..+|.|+|+||+|+. ++.......+.+.+.+.
T Consensus 80 ~l~-----~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~------------~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 80 YIL-----SGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA------------EKQNIRIDIDALSARLG 142 (772)
T ss_pred HHh-----ccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhh------------hccCcHHHHHHHHHHhC
Confidence 321 1122321 1123344578899999999982 11222223344555553
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhcc
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQH 522 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (551)
.|++.+ ++|.+ +++.+.+.+..+.. . ....-|+ .+..+.+.++...+..... ..++++...+.|+.
T Consensus 143 --~pVvpiSA~~g~GIdeL~~~I~~~~~~~--~-~~~~~yp--~~le~~I~~l~~~L~e~ia----e~~~RwLAiKlLEg 211 (772)
T PRK09554 143 --CPVIPLVSTRGRGIEALKLAIDRHQANE--N-VELVHYP--QPLLNEADSLAKVMPSDIP----LQQRRWLGLQMLEG 211 (772)
T ss_pred --CCEEEEEeecCCCHHHHHHHHHHhhhcc--C-CcccCCC--HHHHHHHHHHHHHhhhhhc----cccchHHHHHHhcC
Confidence 566666 78888 99999988765311 0 1111122 2333444444444422111 12467777777776
Q ss_pred C
Q psy11743 523 H 523 (551)
Q Consensus 523 ~ 523 (551)
.
T Consensus 212 D 212 (772)
T PRK09554 212 D 212 (772)
T ss_pred c
Confidence 4
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.3e-10 Score=113.14 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=56.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..++||||+|+..... . ....||++++|+++.. .+......... ....-++|+||+|+.+.
T Consensus 149 ~d~viieT~Gv~qs~~---------~-----i~~~aD~vlvv~~p~~---gd~iq~~k~gi--~E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 149 YDVILVETVGVGQSET---------A-----VAGMVDFFLLLQLPGA---GDELQGIKKGI--MELADLIVINKADGDNK 209 (332)
T ss_pred CCEEEEECCCCccchh---------H-----HHHhCCEEEEEecCCc---hHHHHHHHhhh--hhhhheEEeehhcccch
Confidence 4689999999985221 1 3567999999987432 12221111101 11234899999999875
Q ss_pred HHHHHHHHHHHHHccccc---CCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVL---QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~---~~~~~~~v~iSa~~g~~~ 252 (551)
....+........+.... ....+|++++||.++.|+
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GI 248 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGI 248 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCH
Confidence 433222222222233211 112368999999999988
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=109.76 Aligned_cols=141 Identities=21% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCC-CCCCc--cceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI-GPEPT--TDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~-~~~~t--t~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.+.|+|+|.+|+|||||||.|++........ .+.+. ..+...+..... .+. .
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~l~---------------e 58 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTV----------ELE---------------E 58 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEE----------EEE---------------E
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEE----------Eec---------------c
Confidence 3689999999999999999999987532210 00000 000000000000 000 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccc--cccc-hHHHHHHHH-------------hccCEEEEEEeCCCCCCChHHHHHHHH
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVD--RGYD-FTGVLEWFA-------------ERVDRIILLFDAHKLDISDEFRRSIEA 196 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~--~~~~-~~~~~~~~~-------------~~aD~il~VvDa~~~~~~~~~~~~l~~ 196 (551)
+..-..+++|||||+.+....... .-.+ +.++...++ .+.|++|++++++..++.+.+.+.++.
T Consensus 59 ~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~ 138 (281)
T PF00735_consen 59 NGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKR 138 (281)
T ss_dssp TCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHH
T ss_pred CCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHH
Confidence 111146999999999864321100 0000 001111111 568999999999865889999999988
Q ss_pred HhCCCCcEEEEEcCCCCCCHHHHHHH
Q psy11743 197 LRGHDDKIRIVLNKADMVDHQQLMRV 222 (551)
Q Consensus 197 l~~~~~~vilVlNK~Dl~~~~~~~~~ 222 (551)
|.+. .++|-|+.|+|.+..+++...
T Consensus 139 Ls~~-vNvIPvIaKaD~lt~~el~~~ 163 (281)
T PF00735_consen 139 LSKR-VNVIPVIAKADTLTPEELQAF 163 (281)
T ss_dssp HTTT-SEEEEEESTGGGS-HHHHHHH
T ss_pred hccc-ccEEeEEecccccCHHHHHHH
Confidence 8754 779999999999998776443
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=115.52 Aligned_cols=132 Identities=24% Similarity=0.327 Sum_probs=87.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|.++|+|+..+|||-|+..|-+.++. .+..-+....+...|-+.+. +. ..+..+..++.....
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVq---egeaggitqqIgAt~fp~~n-i~-e~tk~~~~~~K~~~k---------- 538 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQ---EGEAGGITQQIGATYFPAEN-IR-EKTKELKKDAKKRLK---------- 538 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccc---cccccceeeeccccccchHH-HH-HHHHHHHhhhhhhcC----------
Confidence 5699999999999999999999998752 21111111111111111000 00 000011111111000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
...+.+|||||+.+ |...-......||++|+|+|..+ ++.++..+-+..|+..+.|+|+.+||+|.+
T Consensus 539 -vPg~lvIdtpghEs-----------FtnlRsrgsslC~~aIlvvdImh-GlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 539 -VPGLLVIDTPGHES-----------FTNLRSRGSSLCDLAILVVDIMH-GLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred -CCeeEEecCCCchh-----------hhhhhhccccccceEEEEeehhc-cCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 13589999999876 55555566789999999999997 899999999999999999999999999986
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-10 Score=113.53 Aligned_cols=106 Identities=25% Similarity=0.283 Sum_probs=73.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~Dl~~ 215 (551)
+++.+.||||+.. |.+.+-.-+.-||+.++++|++. ++.++.++..-...-.+ +.+++.+||+||++
T Consensus 86 RkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvd 153 (431)
T COG2895 86 RKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLLGIRHVVVAVNKMDLVD 153 (431)
T ss_pred ceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhCCcEEEEEEeeecccc
Confidence 7899999999975 66666666789999999999996 88777765443333333 45889999999997
Q ss_pred H-HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcc
Q psy11743 216 H-QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVH 254 (551)
Q Consensus 216 ~-~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~ 254 (551)
- ++..+.+.+.+..+..-.+......+++||+.|.++..
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3 33333334443332221233334678999999998843
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=122.88 Aligned_cols=134 Identities=20% Similarity=0.213 Sum_probs=84.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|..|+|||||+++|+...-.....+. .........+...+ ..+|.........+...
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~--v~~~~~~~d~~~~e-----------~~r~~ti~~~~~~~~~~-- 71 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE--VEDGTTVTDWMPQE-----------QERGITIESAATSCDWD-- 71 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCcccccc--ccCCcccCCCCHHH-----------HhcCCCcccceEEEEEC--
Confidence 3468999999999999999999975321111100 00000000000000 00111000000011110
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
...+.+|||||+.+ +...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+||+|+.
T Consensus 72 -~~~i~liDtPG~~d-----------f~~~~~~~l~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 72 -NHRINLIDTPGHID-----------FTGEVERSLRVLDGAVVVFDAVT-GVQPQTETVWRQADRYGIPRLIFINKMDRV 138 (687)
T ss_pred -CEEEEEEECCCcHH-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEEECCCCC
Confidence 14689999999865 56677888999999999999986 677777777777888889999999999988
Q ss_pred CH
Q psy11743 215 DH 216 (551)
Q Consensus 215 ~~ 216 (551)
..
T Consensus 139 ~~ 140 (687)
T PRK13351 139 GA 140 (687)
T ss_pred CC
Confidence 53
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=124.48 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=59.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+++|||||+.+ |...+..++..+|.+++|+|+.. +...+...+++.+...++|+++++||+|..
T Consensus 98 ~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCC-CCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 3479999999975 77788888999999999999996 888888888998888899999999999998
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=105.00 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=78.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCc-cceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPT-TDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~t-t~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|..|||||||+|+|.+..+. ....+| ...+....... ++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~---------------~~~--------------- 52 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP---EGYPPTIGNLDPAKTIEP---------------YRR--------------- 52 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc---ccCCCceeeeeEEEEEEe---------------CCC---------------
Confidence 78999999999999999999998763 111122 11111100000 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC-CCCChHHHHHHHHHhC---CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK-LDISDEFRRSIEALRG---HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~-~~~~~~~~~~l~~l~~---~~~~vilVlNK~ 211 (551)
-..+.+|||+|..+ +......+...++++++++|... .........+...+.. ...|+++|.||+
T Consensus 53 ~~~~~~~Dt~gq~~-----------~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (219)
T COG1100 53 NIKLQLWDTAGQEE-----------YRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121 (219)
T ss_pred EEEEEeecCCCHHH-----------HHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccc
Confidence 03488999999875 66677788899999999999985 2233333455555554 258999999999
Q ss_pred CCCCHH
Q psy11743 212 DMVDHQ 217 (551)
Q Consensus 212 Dl~~~~ 217 (551)
|+....
T Consensus 122 Dl~~~~ 127 (219)
T COG1100 122 DLFDEQ 127 (219)
T ss_pred ccccch
Confidence 998764
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=111.40 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=69.5
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH-
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH- 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~- 216 (551)
.+.+|||||+.+ |.-.+.+.+..|...|+|+||++ +...+...-.-...+++..++-|+||+||...
T Consensus 77 ~lnlIDTPGHVD-----------FsYEVSRSLAACEGalLvVDAsQ-GveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 77 VLNLIDTPGHVD-----------FSYEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALENNLEIIPVLNKIDLPAAD 144 (603)
T ss_pred EEEEcCCCCccc-----------eEEEehhhHhhCCCcEEEEECcc-chHHHHHHHHHHHHHcCcEEEEeeecccCCCCC
Confidence 489999999986 33334556778999999999997 88777644333444678899999999999753
Q ss_pred -HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 -QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 -~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.+.+... .+.+....+.+||++|.|+
T Consensus 145 pervk~eIe~~-------iGid~~dav~~SAKtG~gI 174 (603)
T COG0481 145 PERVKQEIEDI-------IGIDASDAVLVSAKTGIGI 174 (603)
T ss_pred HHHHHHHHHHH-------hCCCcchheeEecccCCCH
Confidence 3333333222 2556667788999999998
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.4e-10 Score=97.34 Aligned_cols=151 Identities=16% Similarity=0.219 Sum_probs=98.2
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.+..+..+|+|.+|+|||||+-++....+.+..+ .|+..-..|.. ..++| ..
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYi---tTiGvDfkirT----v~i~G----------~~----------- 56 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYI---TTIGVDFKIRT----VDING----------DR----------- 56 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceE---EEeeeeEEEEE----eecCC----------cE-----------
Confidence 3445678999999999999999998776532211 11111111111 11112 11
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK 210 (551)
-.+.|+||+|... |...+..+.+..+.+++|.|.++......-..|++.++.. ..|-++|.||
T Consensus 57 ----VkLqIwDtAGqEr-----------Frtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK 121 (198)
T KOG0079|consen 57 ----VKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNK 121 (198)
T ss_pred ----EEEEEeecccHHH-----------HHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccC
Confidence 3588999999864 7778888999999999999999733333446777777643 4678999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.|......+.. -.+..|.++. + ...+.+|++...++
T Consensus 122 ~d~~~RrvV~t-~dAr~~A~~m--g---ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 122 NDDPERRVVDT-EDARAFALQM--G---IELFETSAKENENV 157 (198)
T ss_pred CCCccceeeeh-HHHHHHHHhc--C---chheehhhhhcccc
Confidence 99986543322 2344455555 2 23456899888777
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-09 Score=103.04 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=105.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccc-cccc--cceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFG-NSFL--NRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g-~~~~--~~~~~~~~ 131 (551)
+...|.++|+-..|||||..+|.|--.. .-+.+..+.-.+-+-|.+. .+.. --+.+. +.+. ..|..|..
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~--~hseElkRgitIkLGYAd~--~i~k----C~~c~~~~~y~~~~~C~~cg~ 80 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTD--RHSEELKRGITIKLGYADA--KIYK----CPECYRPECYTTEPKCPNCGA 80 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeee--chhHHHhcCcEEEeccccC--ceEe----CCCCCCCcccccCCCCCCCCC
Confidence 4568999999999999999999985310 0011111111111111111 0000 000011 1111 12333445
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-CCcEEEEEcC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-DDKIRIVLNK 210 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-~~~vilVlNK 210 (551)
+.++++.+.|||.||++- .+..+..-..--|..|+|++|+.+-..++..+.+-.+.-. -+.+++|-||
T Consensus 81 ~~~l~R~VSfVDaPGHe~-----------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNK 149 (415)
T COG5257 81 ETELVRRVSFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNK 149 (415)
T ss_pred CccEEEEEEEeeCCchHH-----------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecc
Confidence 557789999999999864 3445555556679999999999644455555554444322 3569999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
+|+++.++..+.|.+... ++.+ ....|++++||..+.++
T Consensus 150 IDlV~~E~AlE~y~qIk~---FvkGt~Ae~aPIIPiSA~~~~NI 190 (415)
T COG5257 150 IDLVSRERALENYEQIKE---FVKGTVAENAPIIPISAQHKANI 190 (415)
T ss_pred cceecHHHHHHHHHHHHH---HhcccccCCCceeeehhhhccCH
Confidence 999998876665554322 2222 34568999999888877
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=105.03 Aligned_cols=76 Identities=25% Similarity=0.158 Sum_probs=49.8
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhc--cCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcEEEEEcC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAER--VDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKIRIVLNK 210 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~--aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~vilVlNK 210 (551)
.+.+|||||..+....+ .........+.. ++++++|+|++. ..+..+.....++. +.++|+++|+||
T Consensus 98 ~~~~~d~~g~~~~~~~~-----~~~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 98 DYVLVDTPGQMELFAFR-----ESGRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CEEEEeCCcHHHHHhhh-----HHHHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 68999999986632210 112223333333 899999999985 44555533333332 568999999999
Q ss_pred CCCCCHHHH
Q psy11743 211 ADMVDHQQL 219 (551)
Q Consensus 211 ~Dl~~~~~~ 219 (551)
+|+.+..+.
T Consensus 172 ~D~~~~~~~ 180 (253)
T PRK13768 172 ADLLSEEEL 180 (253)
T ss_pred HhhcCchhH
Confidence 999976543
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=123.50 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=56.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...+++.+.+.+.|.++|+||+|...
T Consensus 86 ~~i~liDTPG~~~-----------f~~~~~~al~~aD~~llVvda~~-g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 86 YLINLIDTPGHVD-----------FGGDVTRAMRAVDGAIVVVCAVE-GVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred eEEEEEeCCCccc-----------cHHHHHHHHHhcCEEEEEEecCC-CCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 4589999999975 55667788999999999999986 7777777777777777889999999999863
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=92.54 Aligned_cols=132 Identities=21% Similarity=0.177 Sum_probs=85.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
++++||+.|+|||||+|+|-|.+... .+..+|.+.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly---------kKTQAve~~d----------------------------------- 38 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY---------KKTQAVEFND----------------------------------- 38 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh---------cccceeeccC-----------------------------------
Confidence 68999999999999999999987421 0111222211
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
=-.|||||-.-... .+...+......+|++++|..+.+ +-+.....++. -..+|+|-|++|+|+.++.
T Consensus 39 -~~~IDTPGEy~~~~-------~~Y~aL~tt~~dadvi~~v~~and-~~s~f~p~f~~---~~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 39 -KGDIDTPGEYFEHP-------RWYHALITTLQDADVIIYVHAAND-PESRFPPGFLD---IGVKKVIGVVTKADLAEDA 106 (148)
T ss_pred -ccccCCchhhhhhh-------HHHHHHHHHhhccceeeeeecccC-ccccCCccccc---ccccceEEEEecccccchH
Confidence 13589999764221 145556666789999999998885 22221112222 1246799999999999776
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++...-. +... ....+++.+|+....|+
T Consensus 107 dI~~~~~-~L~e------aGa~~IF~~s~~d~~gv 134 (148)
T COG4917 107 DISLVKR-WLRE------AGAEPIFETSAVDNQGV 134 (148)
T ss_pred hHHHHHH-HHHH------cCCcceEEEeccCcccH
Confidence 6544322 2211 22447888999877776
|
|
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=91.42 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=92.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++-.|+|..|+|||.|+..++.+++ +.+-|.+. .+..+..-.++. |+.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphti-----gvefgtriievs----------gqk-------------- 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTI-----GVEFGTRIIEVS----------GQK-------------- 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH--hhcCCccc-----ceecceeEEEec----------CcE--------------
Confidence 46789999999999999999999886 33333221 111111000011 110
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVlNK~D 212 (551)
-++.+|||+|... |..+++.+.+.+...++|.|......-.....|+...+.. +.-++++.||+|
T Consensus 60 -iklqiwdtagqer-----------fravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkad 127 (215)
T KOG0097|consen 60 -IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD 127 (215)
T ss_pred -EEEEEeecccHHH-----------HHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhh
Confidence 3588999999865 8889999999999999999998522222223444443433 344888999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+-...++.-.-...|. .......+..||++|.++
T Consensus 128 le~qrdv~yeeak~fa------eengl~fle~saktg~nv 161 (215)
T KOG0097|consen 128 LESQRDVTYEEAKEFA------EENGLMFLEASAKTGQNV 161 (215)
T ss_pred hhhcccCcHHHHHHHH------hhcCeEEEEecccccCcH
Confidence 9765443211112221 223345667899999988
|
|
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=100.69 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=90.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce----EEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR----FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~----~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+|+++|.+|||||+|...+++..+... ..||... ...+. + .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~---y~ptied~y~k~~~v~-~------------------~----------- 49 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED---YDPTIEDSYRKELTVD-G------------------E----------- 49 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc---cCCCccccceEEEEEC-C------------------E-----------
Confidence 46899999999999999999999886322 2222211 11110 0 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIV 207 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilV 207 (551)
. -.+.|+||+|..+ +......++..+|..++|++..+.........+.+.+. ....|+++|
T Consensus 50 --~--~~l~ilDt~g~~~-----------~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlV 114 (196)
T KOG0395|consen 50 --V--CMLEILDTAGQEE-----------FSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILV 114 (196)
T ss_pred --E--EEEEEEcCCCccc-----------ChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEE
Confidence 0 2377999999433 55566778899999999999986333333345555552 235699999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.||+|+....++...-...+ . .....+.+.+||+...++
T Consensus 115 GNK~Dl~~~R~V~~eeg~~l---a---~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 115 GNKCDLERERQVSEEEGKAL---A---RSWGCAFIETSAKLNYNV 153 (196)
T ss_pred EEcccchhccccCHHHHHHH---H---HhcCCcEEEeeccCCcCH
Confidence 99999986433322111111 1 112234677899877665
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=110.95 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=68.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+|||.||||||||+|+|++.+ +.+...|.+|.+....+..-.+. .++.+. ..+-|....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~------r~~~l~-----------~~~~p~~~~ 64 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDP------RLDKLA-----------EIVKPKKIV 64 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccc------cchhhH-----------HhcCCcccc
Confidence 689999999999999999999988 45666677787776655442211 000000 000111111
Q ss_pred -cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 137 -KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 137 -~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
..+.++||||+..+... +..+.......++++|++++|+|+.
T Consensus 65 ~a~i~lvD~pGL~~~a~~----g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 65 PATIEFVDIAGLVKGASK----GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CceEEEEECCCCCCCCCh----HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 35899999999864322 1223445566789999999999986
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-09 Score=119.26 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=83.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC-C
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-S 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-~ 133 (551)
....|+++|+.++|||||+.+|+...-.+.....+.+ ....+...+. - .|.........+... .
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~----~~~D~~~~E~-~----------rgiTi~~~~~~~~~~~~ 83 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQ----LALDFDEEEQ-A----------RGITIKAANVSMVHEYE 83 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcc----eecCccHHHH-H----------hhhhhhccceEEEEEec
Confidence 3467999999999999999999976432111111110 0001111000 0 000000000000000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
.--..+++|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+.+.+.|.++++||+|.
T Consensus 84 ~~~~~i~liDtPG~~d-----------f~~~~~~~l~~~D~avlVvda~~-g~~~~t~~~~~~~~~~~~~~iv~iNK~D~ 151 (731)
T PRK07560 84 GKEYLINLIDTPGHVD-----------FGGDVTRAMRAVDGAIVVVDAVE-GVMPQTETVLRQALRERVKPVLFINKVDR 151 (731)
T ss_pred CCcEEEEEEcCCCccC-----------hHHHHHHHHHhcCEEEEEEECCC-CCCccHHHHHHHHHHcCCCeEEEEECchh
Confidence 0013589999999976 66678888999999999999986 77788878888766677899999999998
Q ss_pred C
Q psy11743 214 V 214 (551)
Q Consensus 214 ~ 214 (551)
.
T Consensus 152 ~ 152 (731)
T PRK07560 152 L 152 (731)
T ss_pred h
Confidence 6
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-09 Score=106.80 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=65.7
Q ss_pred EEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC-cc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV-LK 137 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~-l~ 137 (551)
|+|||.||||||||+|+|++.+. .+...|.+|.+...++..-.+ ..++.+.. +.-|... ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d------~r~~~l~~-----------~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPD------ERLDKLAE-----------IVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEecc------chhhhHHH-----------HhCCceeeee
Confidence 58999999999999999999886 455667777777665443221 11111110 0000000 02
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
.+.++||||+..+... +..........++++|++++|+|+..
T Consensus 63 ~i~lvD~pGl~~~a~~----~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 63 TIEFVDIAGLVKGASK----GEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEEEECCCcCCCCch----hhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 4899999999865432 12233445566789999999999863
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.3e-09 Score=99.98 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=48.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
..++|+++|.+|+||||++|.|.+..+ ...++..+++|+......-+.++.++||||.....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKN-LARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAK 84 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-cccccCCCCceeEEEEEecCCeEEEeCCCCCCCcC
Confidence 578999999999999999999999753 25677788888765543335678999999976543
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-09 Score=111.81 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=88.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
.+++++++|.||+||||++|+|.+.+ ...+++.|+||+. ..+.+++..+.++||||+..+ ...++.++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~---~~~ie~~gi--- 285 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEE--RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET---DDEVEKIGI--- 285 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC---ccHHHHHHH---
Confidence 45799999999999999999999987 3578899999963 335567888999999998753 233444433
Q ss_pred hhhhhhccccCcc-------cccccc-------cccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 382 NRFQCSLVNSPVL-------KGKVLQ-------TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~~~~-------~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
.++...+..+|+. .+.+.. ...++.++|+||+|++... . .. .. ..
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~------------~---~~-----~~-~~ 344 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEI------------D---LE-----EE-NG 344 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccc------------h---hh-----hc-cC
Confidence 2333344444432 111111 2356779999999983110 0 00 11 22
Q ss_pred cchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
.+.+.+ ++|.+ +++++.+.+...
T Consensus 345 ~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 345 KPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred CceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 334444 77888 888888877653
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=121.05 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=56.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ +...+..++..+|++++|+|+.. +.......++..+...++|+++|+||+|+..
T Consensus 60 ~~i~liDtPG~~~-----------~~~~~~~~l~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 60 HKINLIDTPGHVD-----------FTGEVERALRVLDGAVVVVCAVG-GVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHHhCeEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 4589999999864 55667778899999999999986 6777777777778778899999999999875
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=97.49 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=71.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhh---HHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGN---SFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~---~~~ 381 (551)
..+-|+++|++||||||+||+|.|++- -+.+|..||.|+..-...-+....++|-||.--.+-+.+--++++. .++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKN-LARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcc-eeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999751 1899999999986554433444889999987655544444455544 222
Q ss_pred hhhhhhcccc----Ccccccccc---------cccceeEEEecccCC
Q psy11743 382 NRFQCSLVNS----PVLKGKVLQ---------TPEVARVYIGSFWDQ 415 (551)
Q Consensus 382 ~~~~~~~~~~----~~~~~~~~~---------~~~~~~v~~~~~wd~ 415 (551)
..-. .+... |.-.+.... ...++.++|.||.|+
T Consensus 102 ~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 102 EKRA-NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred hhch-hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 2111 12211 222222222 255677888999998
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.8e-09 Score=108.32 Aligned_cols=170 Identities=20% Similarity=0.276 Sum_probs=99.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCC------------CCCCCCCCccceEEEEEeCCCccccCCCCcc-cccccccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFP------------GIHIGPEPTTDRFIAVMYDEREGSVPFSPLD-KFGKFGNS 121 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~------------~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~-~~~~~g~~ 121 (551)
....++++|..++|||||+-+|+-.--. ....+... ..+.+++....+..-.|...+ ....|.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~S--f~yawiLDeT~eERerGvTm~v~~~~fe-- 251 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSS--FAYAWILDETKEERERGVTMDVKTTWFE-- 251 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcc--eeeeEEeccchhhhhcceeEEeeeEEEe--
Confidence 4578999999999999999998852100 01112222 233333333222211221111 000011
Q ss_pred cccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC------CCCChHHHHHHH
Q psy11743 122 FLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK------LDISDEFRRSIE 195 (551)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~------~~~~~~~~~~l~ 195 (551)
++ -..++|+|+||+.+ |...+..-+..||+.++|+|++. +....+.++.+.
T Consensus 252 ----------s~--~~~~tliDaPGhkd-----------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ 308 (603)
T KOG0458|consen 252 ----------SK--SKIVTLIDAPGHKD-----------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHAL 308 (603)
T ss_pred ----------cC--ceeEEEecCCCccc-----------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHH
Confidence 11 15699999999765 55555556688999999999984 223445566666
Q ss_pred HHhCCCC-cEEEEEcCCCCCC--HHHHHHH---HHHHH-HHcccccCCCCceEEEecccCCCCCc
Q psy11743 196 ALRGHDD-KIRIVLNKADMVD--HQQLMRV---YGALM-WSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 196 ~l~~~~~-~vilVlNK~Dl~~--~~~~~~~---~~~~~-~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
.++..++ .+|+++||+|+++ .+...+. +.... ...|+ ....+..+++|++.|+++-
T Consensus 309 llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf--~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 309 LLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGF--KESSVKFIPISGLSGENLI 371 (603)
T ss_pred HHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCc--ccCCcceEecccccCCccc
Confidence 6665554 4899999999995 2222222 22222 22344 4445577889999999983
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-09 Score=103.46 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=91.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...|.|++||.+|+|||||+|+|++..... .+.-..|-|... ....+|+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~------------------------------h~a~Lps 224 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTL------------------------------HSAHLPS 224 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchh------------------------------hhccCCC
Confidence 356999999999999999999999765420 111111111100 0112233
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-------EEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-------IRI 206 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-------vil 206 (551)
. ..+.+.||-|+.+.-...+-. -.+.+..-+..||+++.|+|.+++....+...++..++..+.| ++=
T Consensus 225 g--~~vlltDTvGFisdLP~~Lva---AF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mie 299 (410)
T KOG0410|consen 225 G--NFVLLTDTVGFISDLPIQLVA---AFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIE 299 (410)
T ss_pred C--cEEEEeechhhhhhCcHHHHH---HHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHh
Confidence 3 558999999998743322111 1334455578899999999999855555556677777776654 455
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|-||+|..+..- ...+ ...+.+|+++|.|.
T Consensus 300 VdnkiD~e~~~~---------------e~E~-n~~v~isaltgdgl 329 (410)
T KOG0410|consen 300 VDNKIDYEEDEV---------------EEEK-NLDVGISALTGDGL 329 (410)
T ss_pred hccccccccccC---------------cccc-CCccccccccCccH
Confidence 778887654321 0111 12567999999887
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-09 Score=109.01 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=68.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|||.||||||||+|+|++.+. .+...|.+|.+....+..-.+. .++.+.. +.-+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~------r~~~l~~-----------~~~~~~ 81 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDE------RFDWLCK-----------HFKPKS 81 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccc------hhhHHHH-----------HcCCcc
Confidence 446899999999999999999998874 4556677777776655432211 0000000 000101
Q ss_pred C-ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 135 V-LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 135 ~-l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
. ..++.++||||+..+... +..+.......++++|++++|+|+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~----g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASE----GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcc----hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 135899999999864332 1224445666789999999999986
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.8e-09 Score=98.78 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=46.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChHHHHH---HHHHhCCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDEFRRS---IEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~~~~~---l~~l~~~~~~vilVlNK~D 212 (551)
....+|||||..+...-.-+. .-+.+.+ +-...-+|++|+|..... .+.....+ ...+-+...|.|+|+||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsG-sIIte~l--ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASG-SIITETL--ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCc-cchHhhH--hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence 358899999987643221111 1111111 124567899999976411 12222222 2345578999999999999
Q ss_pred CCCHH
Q psy11743 213 MVDHQ 217 (551)
Q Consensus 213 l~~~~ 217 (551)
+.+.+
T Consensus 193 v~d~~ 197 (366)
T KOG1532|consen 193 VSDSE 197 (366)
T ss_pred ccccH
Confidence 98764
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-09 Score=100.73 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=99.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..|.+++.|++|+|||||+|.++..... .....+++.....+.+ |- .
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~--~~t~k~K~g~Tq~in~-----------------f~----v--------- 181 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNI--ADTSKSKNGKTQAINH-----------------FH----V--------- 181 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhh--hhhcCCCCccceeeee-----------------ee----c---------
Confidence 45699999999999999999999987642 1111112222222111 10 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHH---hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA---ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
..++.+||.||+.... -..+...++...+..++ ++-=.+++++|+.. ++...|...++++.+++.|.-+|+||
T Consensus 182 --~~~~~~vDlPG~~~a~-y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv-~i~~~D~~~i~~~ge~~VP~t~vfTK 257 (320)
T KOG2486|consen 182 --GKSWYEVDLPGYGRAG-YGFELPADWDKFTKSYLLERENLVRVFLLVDASV-PIQPTDNPEIAWLGENNVPMTSVFTK 257 (320)
T ss_pred --cceEEEEecCCccccc-CCccCcchHhHhHHHHHHhhhhhheeeeeeeccC-CCCCCChHHHHHHhhcCCCeEEeeeh
Confidence 1569999999955421 11222234566666554 33445778889985 78888889999999999999999999
Q ss_pred CCCCCHHH-----HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQ-----LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||....-. ...-+...+..+.........|-+++|+.++.|.
T Consensus 258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Gr 304 (320)
T KOG2486|consen 258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGR 304 (320)
T ss_pred hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCc
Confidence 99764321 0001111122233311222234457899888876
|
|
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-09 Score=95.34 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=94.1
Q ss_pred cccCCCCEEEEEeccCCChHHHHHHHHhcCCCC---CCCCCCCccceEEEEEeCCCccccCCCCccccccccccccccee
Q psy11743 51 ADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPG---IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQ 127 (551)
Q Consensus 51 ~~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~---~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~ 127 (551)
.+.+...+.+.+|.+|||||||+-..+...+.. ..++.. .+.+ .+.|........| ..+ +
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGID-FreK--rvvY~s~gp~g~g----------r~~--r-- 66 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGID-FREK--RVVYNSSGPGGGG----------RGQ--R-- 66 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecc-cccc--eEEEeccCCCCCC----------cce--E--
Confidence 344455677889999999999998777655411 000000 0000 1111110000000 000 0
Q ss_pred EEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC----CCc
Q psy11743 128 CSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH----DDK 203 (551)
Q Consensus 128 ~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----~~~ 203 (551)
-.+.+|||+|... |.+.+..+...|=..|+++|.++....-..+.|+..++-+ +-.
T Consensus 67 ---------ihLQlWDTAGQER-----------FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PD 126 (219)
T KOG0081|consen 67 ---------IHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPD 126 (219)
T ss_pred ---------EEEeeeccccHHH-----------HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCC
Confidence 3478999999875 7888889999999999999998522222234566655532 344
Q ss_pred EEEEEcCCCCCCHHHHHHHHHH-HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 204 IRIVLNKADMVDHQQLMRVYGA-LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 204 vilVlNK~Dl~~~~~~~~~~~~-~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++++.||+|+.+...+.+.... +.... ..|.+.+||.+|.++
T Consensus 127 ivlcGNK~DL~~~R~Vs~~qa~~La~ky-------glPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 127 IVLCGNKADLEDQRVVSEDQAAALADKY-------GLPYFETSACTGTNV 169 (219)
T ss_pred EEEEcCccchhhhhhhhHHHHHHHHHHh-------CCCeeeeccccCcCH
Confidence 8999999999876555433222 22222 236678999999987
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-09 Score=106.76 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=46.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEe-cCCCccccCCceeecCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMY-DEREGSVPGNALVVDPK 367 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~-~~~~~~l~dt~gi~~~~ 367 (551)
..|+++|.||+||||++|.|.+.. ..++.+|.||+... +.+ +...+.+.||||+....
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~---~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga 220 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGA 220 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC---CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCC
Confidence 469999999999999999999876 56899999996322 344 45678999999998644
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=98.88 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=71.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
+.+..||+||+.+ |.+.+..-+.+.|..|+|+.|.+ +..++.++.+-..++.+.| +++.+||+|+++
T Consensus 75 rhyahVDcPGHaD-----------YvKNMItgAaqmDgAILVVsA~d-GpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 75 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred ceEEeccCCChHH-----------HHHHHhhhHHhcCccEEEEEcCC-CCCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 6789999999976 66667777788999999999997 7777777777777788886 667789999998
Q ss_pred HHHHHHHHHHHHHHcccccCCC--CceEEEeccc
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTP--EVARVYIGSF 247 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~--~~~~v~iSa~ 247 (551)
++++.+..+.+...|-..++.+ ..|++.-||+
T Consensus 143 d~ellelVemEvreLLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 143 DEELLELVEMEVRELLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhh
Confidence 7776554443333322222333 4466666664
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.8e-09 Score=110.63 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=91.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
...|+|+|.||+|||||+|.|.+.. ..++.+|.||+.. .+.+++..+.+.||||+........ .++..|+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak---pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~---gLg~~fLr 232 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK---PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK---GLGLDFLR 232 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC---ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh---HHHHHHHH
Confidence 4579999999999999999999986 5679999999632 2456778899999999975432221 23333332
Q ss_pred hhhhhccccCccc----------cc-----------cc--------------ccccceeEEEecccCCCCccchhhhhhh
Q psy11743 383 RFQCSLVNSPVLK----------GK-----------VL--------------QTPEVARVYIGSFWDQPLVHDVNRRLFE 427 (551)
Q Consensus 383 ~~~~~~~~~~~~~----------~~-----------~~--------------~~~~~~~v~~~~~wd~~~~~~~~~~l~~ 427 (551)
.+.++|++. +. .+ .-.+.+.|+|+||+|++-. ..
T Consensus 233 ----hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----~e--- 301 (500)
T PRK12296 233 ----HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----RE--- 301 (500)
T ss_pred ----HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh----HH---
Confidence 233333211 00 00 1124678999999998411 00
Q ss_pred hhccChhhHHHHHHHHHH-hccchhhh--ccchH-HHHHHHHHHHHHHHhh
Q psy11743 428 DRSSTSNSVQAYIISALR-KDMPSVFG--KEGKK-KELIKKLDEIYKQIQR 474 (551)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~-~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~ 474 (551)
..+.+...+. ...+++.+ +++.+ ++|+..+.+..+.+++
T Consensus 302 --------l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 302 --------LAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred --------HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 1112222232 12355555 78888 9999999998876654
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-09 Score=96.75 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=42.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCC-CccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDER-EGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~-~~~l~dt~gi~~ 365 (551)
.|+++|.+|+||||++|.|.+.. ..++..|++|+.. ....++. .+.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~---~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK---PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC---ccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 48999999999999999999876 3567777777421 2344555 788999999864
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-08 Score=114.77 Aligned_cols=67 Identities=24% Similarity=0.367 Sum_probs=55.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.||||||+.. |..........+|++++|+|+.+ ++..+..+.+..+...+.|+++|+||+|+.+
T Consensus 526 p~i~fiDTPGhe~-----------F~~lr~~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 526 PGLLFIDTPGHEA-----------FTSLRKRGGSLADLAVLVVDINE-GFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred CcEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 3589999999754 44444455678999999999986 7888888888888888899999999999974
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=102.14 Aligned_cols=156 Identities=20% Similarity=0.184 Sum_probs=109.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.|+..|+...|||||+.++.|..-...+. .-+.|.|-- ..|-+ .++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg--~~y~~---------------~~d--------------- 49 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLG--FYYRK---------------LED--------------- 49 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeee--eEecc---------------CCC---------------
Confidence 47889999999999999999876321111 111222221 11111 111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
..+.|||.||+.+ +.+.+...+...|..++|+|+.+ ++..+..+.+..+.-.+++ .++|+||+|..
T Consensus 50 -~~~~fIDvpgh~~-----------~i~~miag~~~~d~alLvV~~de-Gl~~qtgEhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 50 -GVMGFIDVPGHPD-----------FISNLLAGLGGIDYALLVVAADE-GLMAQTGEHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred -CceEEeeCCCcHH-----------HHHHHHhhhcCCceEEEEEeCcc-CcchhhHHHHHHHHhcCCCceEEEEeccccc
Confidence 3589999999975 66677777889999999999986 8888888888888766666 59999999999
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcc
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSL 275 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~ 275 (551)
++..+.+........+. .+..+++.+|+.+|+|+ ++|...+.++
T Consensus 117 d~~r~e~~i~~Il~~l~----l~~~~i~~~s~~~g~GI-------------~~Lk~~l~~L 160 (447)
T COG3276 117 DEARIEQKIKQILADLS----LANAKIFKTSAKTGRGI-------------EELKNELIDL 160 (447)
T ss_pred cHHHHHHHHHHHHhhcc----cccccccccccccCCCH-------------HHHHHHHHHh
Confidence 87766555555444443 34456788999999998 5666666444
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.4e-08 Score=99.14 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=56.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..++||||||..... ...+..+|.++++.++. ...+...+...+. .+|.++|+||+|+...
T Consensus 127 ~D~viidT~G~~~~e--------------~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~--~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 127 YDVIIVETVGVGQSE--------------VDIANMADTFVVVTIPG---TGDDLQGIKAGLM--EIADIYVVNKADGEGA 187 (300)
T ss_pred CCEEEEeCCCCchhh--------------hHHHHhhceEEEEecCC---ccHHHHHHHHHHh--hhccEEEEEcccccch
Confidence 468999999976421 12356789999886543 2233333333332 5788999999999875
Q ss_pred HHHHHHHHH---HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGA---LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~---~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
......... ....+..-.....++++.+||+++.|+
T Consensus 188 ~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi 226 (300)
T TIGR00750 188 TNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGI 226 (300)
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCH
Confidence 432111111 111111100112246899999999988
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=101.45 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=89.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+.++++|+.|.|||||||.|++.++..-...+++.......+....... .-.++.+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~-----------------------~iee~g~ 77 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKV-----------------------EIEENGV 77 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeee-----------------------eecCCCe
Confidence 37899999999999999999999865322111211111110000000000 0001111
Q ss_pred ccCeEEEeCCCCCCCcccccccc--cc-hHHHHHHHH-------------hccCEEEEEEeCCCCCCChHHHHHHHHHhC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRG--YD-FTGVLEWFA-------------ERVDRIILLFDAHKLDISDEFRRSIEALRG 199 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~--~~-~~~~~~~~~-------------~~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 199 (551)
-..+++|||||+.+..+....-. .+ +.++...++ .+.|++|+.+.+..-++.+.+..+++.+..
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~ 157 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK 157 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc
Confidence 14689999999988644321100 00 111222222 378999999999866799999888888764
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHH
Q psy11743 200 HDDKIRIVLNKADMVDHQQLMRVYGALM 227 (551)
Q Consensus 200 ~~~~vilVlNK~Dl~~~~~~~~~~~~~~ 227 (551)
...+|-|+-|+|.+.++++...-...+
T Consensus 158 -~vNiIPVI~KaD~lT~~El~~~K~~I~ 184 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDELNQFKKRIR 184 (366)
T ss_pred -cccccceeeccccCCHHHHHHHHHHHH
Confidence 467899999999999887655433333
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=106.92 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=72.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
.+++++++|.|||||||++|+|++.. ...++..|+||+.. .+.+++.++.++||||+.... ..+++++.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~--~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~---~~ie~~gi--- 273 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQD--RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA---DFVERLGI--- 273 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC--CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch---hHHHHHHH---
Confidence 56899999999999999999999987 46788999999732 355678888999999997532 33444443
Q ss_pred hhhhhhccccCcc-------cccc--------cccccceeEEEecccCC
Q psy11743 382 NRFQCSLVNSPVL-------KGKV--------LQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~~--------~~~~~~~~v~~~~~wd~ 415 (551)
.++...+..+|+. .+.+ .....++.++|+||+|+
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl 322 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDL 322 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccC
Confidence 2333344444432 1111 11235678999999998
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=97.20 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=55.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC-CCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK-LDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~-~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.||.|-|+...+ -....-+|.+++|+-+.. ..+...-..+++. .=++|+||+|...
T Consensus 122 ~D~IiiETVGvGQsE--------------~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD~~g 181 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE--------------VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKADRPG 181 (266)
T ss_dssp -SEEEEEEESSSTHH--------------HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--SHHH
T ss_pred CCEEEEeCCCCCccH--------------HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCChHH
Confidence 458999999987622 123478999999998763 1222222334443 3489999999654
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.....+...+.........+.+|++.+||.++.|+
T Consensus 182 A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi 218 (266)
T PF03308_consen 182 ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI 218 (266)
T ss_dssp HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH
Confidence 4444333333332222212334579999999998887
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.5e-09 Score=92.65 Aligned_cols=149 Identities=22% Similarity=0.273 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
-+++|+++|..=||||||+=+....++..-+. .|- ..+|.++-.- +. +
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl---sTl--------------------------QASF~~kk~n--~e-d 59 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHL---STL--------------------------QASFQNKKVN--VE-D 59 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhH---HHH--------------------------HHHHhhcccc--cc-c
Confidence 45899999999999999999998877521110 010 0001110000 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
.--.+.||||+|... |...--.+...++.+|+|+|.++.+.....+.|...++ .....++||.||+
T Consensus 60 ~ra~L~IWDTAGQEr-----------fHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKi 128 (218)
T KOG0088|consen 60 CRADLHIWDTAGQER-----------FHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKI 128 (218)
T ss_pred ceeeeeeeeccchHh-----------hhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcc
Confidence 003589999999875 33333345689999999999986333333355555554 4567899999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+-....+... .++.+.- ..++..+.+||+.+.|+
T Consensus 129 DLEeeR~Vt~q-eAe~YAe-----svGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 129 DLEEERQVTRQ-EAEAYAE-----SVGALYMETSAKDNVGI 163 (218)
T ss_pred cHHHhhhhhHH-HHHHHHH-----hhchhheecccccccCH
Confidence 99765544221 1222211 11234466899888887
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.4e-09 Score=101.90 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=75.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEe---cCCCccccCCceeecCCCCC-chhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY---DEREGSVPGNALVVDPKKQF-RPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~---~~~~~~l~dt~gi~~~~~~~-~~~~~~~~~~ 380 (551)
.-+|+++.|.|||||||+++.|.+.+ .-|.++|=||+++++.+ +...+.++||||+.++.... ..+++-+..-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak---pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK---PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC---CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 56899999999999999999999998 78999999999888665 56678899999999976543 3456655543
Q ss_pred Hhhhhhhccc-cCc--ccccccc-----------cccceeEEEecccCC
Q psy11743 381 LNRFQCSLVN-SPV--LKGKVLQ-----------TPEVARVYIGSFWDQ 415 (551)
Q Consensus 381 ~~~~~~~~~~-~~~--~~~~~~~-----------~~~~~~v~~~~~wd~ 415 (551)
|......+.- -|. ..|-+.. ....+.|+|.||.|.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~ 292 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDI 292 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3332222221 011 1121111 123567888999998
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-08 Score=97.56 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=86.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCC----CCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGI----HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~----~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.+.|+++|+.|.|||||+|.|++...... ...+.+ +.+...+.... .. +. +
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~--~~--------l~--e------------ 77 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEG-TSPTLEIKITK--AE--------LE--E------------ 77 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCccccc-CCcceEEEeee--ee--------ee--c------------
Confidence 47899999999999999999999843111 011110 11111111100 00 00 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccc--cccc-hHHHHHHHH--------------hccCEEEEEEeCCCCCCChHHHHHH
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVD--RGYD-FTGVLEWFA--------------ERVDRIILLFDAHKLDISDEFRRSI 194 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~--~~~~-~~~~~~~~~--------------~~aD~il~VvDa~~~~~~~~~~~~l 194 (551)
+.+-..+++|||||+.+.....-. .-.+ +..+...++ .+.|++|+.+.++.-++.+.+.+.+
T Consensus 78 -~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M 156 (373)
T COG5019 78 -DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM 156 (373)
T ss_pred -CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHH
Confidence 111145999999999885432110 0000 111122222 4679999999988768999998888
Q ss_pred HHHhCCCCcEEEEEcCCCCCCHHHHHHH
Q psy11743 195 EALRGHDDKIRIVLNKADMVDHQQLMRV 222 (551)
Q Consensus 195 ~~l~~~~~~vilVlNK~Dl~~~~~~~~~ 222 (551)
..+.+ ...+|-|+.|+|.+..+++...
T Consensus 157 k~ls~-~vNlIPVI~KaD~lT~~El~~~ 183 (373)
T COG5019 157 KRLSK-RVNLIPVIAKADTLTDDELAEF 183 (373)
T ss_pred HHHhc-ccCeeeeeeccccCCHHHHHHH
Confidence 88865 3668999999999998876554
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-08 Score=97.56 Aligned_cols=157 Identities=21% Similarity=0.173 Sum_probs=95.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+.++|...+|||||..+|..-.. +...-.|+.++..++ .. -+|.|.+++++-
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiT-LD------------------------LGFS~~~v~~pa 62 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGIT-LD------------------------LGFSTMTVLSPA 62 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCccccccee-Ee------------------------ecceeeeccccc
Confidence 6799999999999999999986431 112223333332222 11 123333333321
Q ss_pred ------ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 136 ------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 136 ------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
-.++++||+||+.+ ..+.+.....-.|+.++|+|+.. +...+..+.+-.-....++.++|+|
T Consensus 63 rLpq~e~lq~tlvDCPGHas-----------LIRtiiggaqiiDlm~lviDv~k-G~QtQtAEcLiig~~~c~klvvvin 130 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHAS-----------LIRTIIGGAQIIDLMILVIDVQK-GKQTQTAECLIIGELLCKKLVVVIN 130 (522)
T ss_pred ccCccccceeEEEeCCCcHH-----------HHHHHHhhhheeeeeeEEEehhc-ccccccchhhhhhhhhccceEEEEe
Confidence 14689999999875 33444445567899999999996 7766665555443344577899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH----cccccCCCCceEEEecccCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWS----LGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~----l~~l~~~~~~~~v~iSa~~g~ 250 (551)
|+|.+++.+....+...-.. +.........|++.+|+..|.
T Consensus 131 kid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~ 175 (522)
T KOG0461|consen 131 KIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGY 175 (522)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCc
Confidence 99999764322222111111 111112234689999998773
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-09 Score=96.36 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...|+++|++|||||||+|+|++.....+...|+.|+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~ 140 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW 140 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE
Confidence 467899999999999999999998876666666655543
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-08 Score=95.75 Aligned_cols=128 Identities=22% Similarity=0.298 Sum_probs=71.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|+.++||||..+.+.+.-.+.-...-++|.+.-..-... .| . .
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~----------------~~-----~-----------~ 48 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF----------------LS-----F-----------L 48 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC----------------TT-----S-----------C
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec----------------CC-----C-----------c
Confidence 58999999999999999999765321111223444332111000 01 0 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHH---HHh--CCCCcEEEEEcCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE---ALR--GHDDKIRIVLNKAD 212 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~---~l~--~~~~~vilVlNK~D 212 (551)
.+.+||.||....... .+..+.....++++++|+|+|+...+.......+.. .+. .-+..+.+.++|+|
T Consensus 49 ~l~iwD~pGq~~~~~~------~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D 122 (232)
T PF04670_consen 49 PLNIWDCPGQDDFMEN------YFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMD 122 (232)
T ss_dssp EEEEEEE-SSCSTTHT------THTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CC
T ss_pred EEEEEEcCCccccccc------cccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecc
Confidence 5899999999863321 022344556799999999999994344333333322 232 34677999999999
Q ss_pred CCCHHHHHHHH
Q psy11743 213 MVDHQQLMRVY 223 (551)
Q Consensus 213 l~~~~~~~~~~ 223 (551)
++.++...+.+
T Consensus 123 ~l~~~~r~~~~ 133 (232)
T PF04670_consen 123 LLSEDEREEIF 133 (232)
T ss_dssp CS-HHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99876544433
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-08 Score=86.75 Aligned_cols=145 Identities=23% Similarity=0.238 Sum_probs=92.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+.++|--++|||||+|.+....+. ....||..- ...+.. |+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tk------------------gn-------------- 64 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTK------------------GN-------------- 64 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEecc------------------Cc--------------
Confidence 356899999999999999988765531 112222211 111111 11
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHH-HHh---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIE-ALR---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~-~l~---~~~~~vilVlNK 210 (551)
-.+.++|.||.-. |......+...++++++++|+.+++-.+..++-+. .+. -.++|++++.||
T Consensus 65 --vtiklwD~gGq~r-----------frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK 131 (186)
T KOG0075|consen 65 --VTIKLWDLGGQPR-----------FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNK 131 (186)
T ss_pred --eEEEEEecCCCcc-----------HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccc
Confidence 3478999999864 67778889999999999999997544443333333 332 258999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
.|+...-.. .+...++|.. ....++.-+.+|++...++
T Consensus 132 ~d~~~AL~~----~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 132 IDLPGALSK----IALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred ccCcccccH----HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 998753221 1223334442 2344556678899877766
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.4e-09 Score=105.70 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=46.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecC-CCccccCCceeecCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDE-REGSVPGNALVVDPK 367 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~-~~~~l~dt~gi~~~~ 367 (551)
-..|+++|.||+|||||+|+|.+.. ..++.+|.||+... +.+++ ..+.++||||+....
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~---~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a 219 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGA 219 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC---ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCC
Confidence 3469999999999999999999876 56888888885222 44455 788999999997543
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=93.40 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=40.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCC-CcccccCC----CcccceEEEEecCCCccccCCceeecCCCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPE----PTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~-~~~~v~~~----~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
+.+++++|++||||||++|+|++..- .--.|+.. -.||++..+..-+....++||||+.+....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence 46899999999999999999999842 11122222 345555554444667899999999987754
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=111.67 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=92.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+....|.|+|+..+|||||..+|+-..-.+.. .+.+++..+...+.+.+ .+.|-........+....
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~E-----------qeRGITI~saa~s~~~~~ 74 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQE-----------QERGITITSAATTLFWKG 74 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHH-----------HhcCCEEeeeeeEEEEcC
Confidence 34568999999999999999999964321111 22222221111111110 011211111111111111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
+ ..+++|||||+.+ |...+..++.-+|.+++|+|+.. +...+...+.+.+.+.+.|.++++||+|.
T Consensus 75 ~--~~iNlIDTPGHVD-----------Ft~EV~rslrvlDgavvVvdave-GV~~QTEtv~rqa~~~~vp~i~fiNKmDR 140 (697)
T COG0480 75 D--YRINLIDTPGHVD-----------FTIEVERSLRVLDGAVVVVDAVE-GVEPQTETVWRQADKYGVPRILFVNKMDR 140 (697)
T ss_pred c--eEEEEeCCCCccc-----------cHHHHHHHHHhhcceEEEEECCC-CeeecHHHHHHHHhhcCCCeEEEEECccc
Confidence 1 4599999999987 78889999999999999999996 89999999999999999999999999999
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 141 ~~a 143 (697)
T COG0480 141 LGA 143 (697)
T ss_pred ccc
Confidence 854
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.3e-09 Score=98.81 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
.+.++|+++|.+|+||||++|.|.+..+ ...+++.+++|+......-+..+.++||||.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 78 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKK-LARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAK 78 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-cccccCCCCcceEEEEEEeCCcEEEEeCCCCcccc
Confidence 4678999999999999999999999863 24567788888754432223478899999976543
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=105.74 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=46.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEe-cCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMY-DEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~-~~~~~~l~dt~gi~~ 365 (551)
..++|+++|.||+||||++|+|.+.+ ..+...+++|+ ...+.+ ++.++.++||||+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~---~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD---VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc---eeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 45899999999999999999999987 56777787775 222444 567889999999854
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-08 Score=93.63 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=45.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~ 367 (551)
..+++++|.+|+||||++|+|++... ..++..+.+++... ...++..+.++||||+..+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce--EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 46899999999999999999999873 55666666665222 22345678899999987654
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=112.05 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=85.1
Q ss_pred eecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhhhhhcc
Q psy11743 313 GQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCSLV 389 (551)
Q Consensus 313 g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (551)
|+|||||||++|.|.|.. ..+++.|++|.. ..+.+++.++.++||||..+-. ..+.-++....++.. .
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~-~~s~~e~v~~~~l~~-----~ 71 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLT-TFSLEEEVARDYLLN-----E 71 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccC-ccchHHHHHHHHHhh-----c
Confidence 899999999999999987 578999999953 3355677889999999998643 222222333322221 1
Q ss_pred ccCc-------c-------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchhhh--
Q psy11743 390 NSPV-------L-------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFG-- 453 (551)
Q Consensus 390 ~~~~-------~-------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 453 (551)
.+|+ . .-....+.+++.|+|+||+|+. ++.......+.+.+.+ ..|.+.+
T Consensus 72 ~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~------------~~~~i~~d~~~L~~~l--g~pvv~tSA 137 (591)
T TIGR00437 72 KPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEA------------EKKGIRIDEEKLEERL--GVPVVPTSA 137 (591)
T ss_pred CCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHH------------HhCCChhhHHHHHHHc--CCCEEEEEC
Confidence 2221 1 1122234568889999999982 1111111233444444 2566665
Q ss_pred ccchH-HHHHHHHHHHH
Q psy11743 454 KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 454 ~~~~~-~~l~~~~~~~~ 469 (551)
++|.+ +++++.+.+..
T Consensus 138 ~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 138 TEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999 99999987654
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=95.73 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=43.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE-EEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~-~~~~~~~~~l~dt~gi~ 364 (551)
..++|+++|.+||||||++|+|.+.. ..++..|++|+... ..++ .+.++||||+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~---~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~ 63 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK---VRVGKRPGVTRKPNHYDWG--DFILTDLPGFG 63 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CccCCCCceeeCceEEeec--ceEEEeCCccc
Confidence 45799999999999999999999877 45777888886332 3333 68899999963
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-07 Score=98.16 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=83.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-CCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-REGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..|+|+++|.||+||||++|+|.+.+ ..++..+++|+ ...+.+.+ ..+.++||||+.+. .+.+-++.|
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~---~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp~~lve~f---- 267 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEAR---VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LPHDLVAAF---- 267 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc---eeeccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CCHHHHHHH----
Confidence 35799999999999999999999987 34778888875 22244444 47889999998542 122223333
Q ss_pred HhhhhhhccccCcc-------cccc----------c---ccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHH
Q psy11743 381 LNRFQCSLVNSPVL-------KGKV----------L---QTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYI 440 (551)
Q Consensus 381 ~~~~~~~~~~~~~~-------~~~~----------~---~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~ 440 (551)
.++...+..+|++ .... + ....++.++|+||+|+.... .. .. ..
T Consensus 268 -~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~----------~~----~~-~~ 331 (426)
T PRK11058 268 -KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF----------EP----RI-DR 331 (426)
T ss_pred -HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch----------hH----HH-HH
Confidence 1233344555532 1111 1 12357789999999982110 00 00 00
Q ss_pred HHHHHhccch-hhh--ccchH-HHHHHHHHHHH
Q psy11743 441 ISALRKDMPS-VFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 441 ~~~l~~~~~~-~~~--~~~~~-~~l~~~~~~~~ 469 (551)
. ....|. +.+ ++|.+ ++|++.+.+..
T Consensus 332 -~--~~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 332 -D--EENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred -H--hcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 0 012232 333 88999 99999998755
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=95.30 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+++|.||+|||||+|+|+|.....+...|+.|+..
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~ 155 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM 155 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce
Confidence 3478999999999999999999998876666667766654
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-08 Score=96.42 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=45.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
.+|+++|++|+||||++|+|+|++...+..+ .+++|+. ....+++.++.++||||+.+...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~-~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS-ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC-CCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 3799999999999999999999974322222 3345542 22446788999999999998653
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=90.64 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=38.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEec-CCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYD-EREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~-~~~~~l~dt~gi~ 364 (551)
.++++|++||||||++|+|.+......+-...+++|. .....+. +..+.++||||..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 5899999999999999999986422222223345553 2223344 6678899999963
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=105.39 Aligned_cols=138 Identities=19% Similarity=0.169 Sum_probs=86.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEec-CCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYD-EREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~-~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
..|+++|.|||||||++|.|.+.. ..|+..|.||.... +.+. +..+.++||||+........ .++..|+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak---~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~---gLg~~fLr 232 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK---PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV---GLGHQFLR 232 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC---CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc---hHHHHHHH
Confidence 479999999999999999999987 56788999986322 4444 67899999999975332221 23333433
Q ss_pred hhhhhccccCccc-------c-------------ccc-----ccccceeEEEecccCCCCccchhhhhhhhhccChhhHH
Q psy11743 383 RFQCSLVNSPVLK-------G-------------KVL-----QTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQ 437 (551)
Q Consensus 383 ~~~~~~~~~~~~~-------~-------------~~~-----~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~ 437 (551)
.+.+++++. . ..+ .-...+.++|+||+|++.. ....
T Consensus 233 ----hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~---------------~e~l 293 (424)
T PRK12297 233 ----HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA---------------EENL 293 (424)
T ss_pred ----HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC---------------HHHH
Confidence 223332210 0 000 0135678999999998311 0012
Q ss_pred HHHHHHHHhccchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 438 AYIISALRKDMPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 438 ~~~~~~l~~~~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
+.+.+.+. .+++.+ +++.+ ++|+..+.+.+..
T Consensus 294 ~~l~~~l~--~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 294 EEFKEKLG--PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred HHHHHHhC--CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 33334442 344444 78888 9999999876643
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-08 Score=93.10 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=76.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC-
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV- 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~- 135 (551)
|.++++|..|+|||||++++++... + .+..++.....+..+++..+..-...-....++|.||....++
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~-~---------~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~ 70 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQH-G---------RKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLI 70 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhccc-C---------CcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHH
Confidence 5789999999999999999997642 1 1222233222222222211110000011233467777655332
Q ss_pred ---------------ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhC
Q psy11743 136 ---------------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRG 199 (551)
Q Consensus 136 ---------------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~ 199 (551)
-....+|||||+.++..- ++.- +........-+.|.+++++|+.+... ......+..++..
T Consensus 71 ~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~-~~~~--~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ 147 (158)
T cd03112 71 RALLDLLERLDAGKIAFDRIVIETTGLADPGPV-AQTF--FMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF 147 (158)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcCCHHHH-HHHH--hhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH
Confidence 135689999999874321 1000 01112334467999999999974111 0011233445544
Q ss_pred CCCcEEEEEcCCCC
Q psy11743 200 HDDKIRIVLNKADM 213 (551)
Q Consensus 200 ~~~~vilVlNK~Dl 213 (551)
. -++|+||+|+
T Consensus 148 a---d~ivlnk~dl 158 (158)
T cd03112 148 A---DRILLNKTDL 158 (158)
T ss_pred C---CEEEEecccC
Confidence 3 3779999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-08 Score=90.25 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=43.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~ 365 (551)
|+|+++|.+|+||||++|+|.+..+ .++..+++|+... ...++..+.++||||..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP---EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---ccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 5799999999999999999999873 4556677665333 234567889999999854
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=94.26 Aligned_cols=167 Identities=21% Similarity=0.230 Sum_probs=100.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCC-CCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF-SPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g-~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
|..+|.|--|+|||||+|.|+...- ..+..++.....+..+++ ..+..-..--.+..++|.||++...+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~----------g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl 71 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD----------GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDL 71 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC----------CCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchh
Confidence 6788999999999999999998762 345566666665666663 32222222223456789999977655
Q ss_pred c------------cCeEEEeCCCCCCCcccccccccchHH-HHHHHHhccCEEEEEEeCCCCCCChH--HHHHHHHHhCC
Q psy11743 136 L------------KGISIVDTPGILSGEKQRVDRGYDFTG-VLEWFAERVDRIILLFDAHKLDISDE--FRRSIEALRGH 200 (551)
Q Consensus 136 l------------~~~~lIDTPGi~~~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvDa~~~~~~~~--~~~~l~~l~~~ 200 (551)
+ -...+|.|-|+..+...... +.. ......-..|.++-|+|+.+...... ...+.+++.
T Consensus 72 ~~~~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t----~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-- 145 (323)
T COG0523 72 LPALERLLRRRDRPDRLVIETTGLADPAPVIQT----FLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-- 145 (323)
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHH----hccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH--
Confidence 1 24679999999986432100 100 00011245688999999986221111 123334444
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
..=++|+||.|+++++++ +........+ .|.++++..|.
T Consensus 146 -~AD~ivlNK~Dlv~~~~l-~~l~~~l~~l-----np~A~i~~~~~ 184 (323)
T COG0523 146 -FADVIVLNKTDLVDAEEL-EALEARLRKL-----NPRARIIETSY 184 (323)
T ss_pred -hCcEEEEecccCCCHHHH-HHHHHHHHHh-----CCCCeEEEccc
Confidence 335899999999998763 3333333222 34555555554
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-08 Score=90.84 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=61.9
Q ss_pred EEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhhhh
Q psy11743 310 MLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQC 386 (551)
Q Consensus 310 ~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~ 386 (551)
+++|.+|+||||++|+|.+.. ...++..+++|+ .....+.+..+.++||||...... .+...+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~------~~~~~~~~~~~~ 72 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR--DAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE------GISKEIREQAEL 72 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc--EEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh------HHHHHHHHHHHH
Confidence 478999999999999999986 245667777775 223445677889999999875331 122212222222
Q ss_pred hccccCcc-------cc---------cccccccceeEEEecccCC
Q psy11743 387 SLVNSPVL-------KG---------KVLQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 387 ~~~~~~~~-------~~---------~~~~~~~~~~v~~~~~wd~ 415 (551)
.+..+|++ .+ ..++...++.++|+||||+
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECccc
Confidence 33333321 11 1122335778999999998
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-08 Score=89.90 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=92.6
Q ss_pred ccccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 50 DADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 50 ~~~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
+.+.+.-++++|+|.-++||||+|.+.+..-+ |.+-... .|.+|+.+-+.+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgif---------Tkdykkt--------------------Igvdflerqi~v 64 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIF---------TKDYKKT--------------------IGVDFLERQIKV 64 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhcccc---------ccccccc--------------------cchhhhhHHHHh
Confidence 34556678999999999999999999986543 1111100 111111110000
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIV 207 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilV 207 (551)
.. .+ -...+|||+|..+ |...+..+.++|.+.++|+..++....+...+|.+.+.. ..+|.++|
T Consensus 65 ~~-Ed--vr~mlWdtagqeE-----------fDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 65 LI-ED--VRSMLWDTAGQEE-----------FDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFV 130 (246)
T ss_pred hH-HH--HHHHHHHhccchh-----------HHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEe
Confidence 00 00 2356899999865 777888899999999999998853223333455554432 47999999
Q ss_pred EcCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
-||+|++++..+.. ..+.+...+.. ..+-+|++.+.++
T Consensus 131 qNKIDlveds~~~~~evE~lak~l~~-------RlyRtSvked~NV 169 (246)
T KOG4252|consen 131 QNKIDLVEDSQMDKGEVEGLAKKLHK-------RLYRTSVKEDFNV 169 (246)
T ss_pred eccchhhHhhhcchHHHHHHHHHhhh-------hhhhhhhhhhhhh
Confidence 99999997654322 12223322222 1233777777766
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=90.33 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=42.1
Q ss_pred EEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecC
Q psy11743 311 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 311 ~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~ 366 (551)
++|.+||||||++|+|.+.. ..++..+++|+. ..+.+.+..+.++||||....
T Consensus 1 l~G~~~~GKssl~~~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR---QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc---ccccCCCCcccccceEEEeeCCeEEEEEECCCcccc
Confidence 57999999999999999886 466777888852 335566778899999998653
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.1e-08 Score=93.84 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=82.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccccccc---ccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGN---SFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~---~~~~~~~~~~~ 131 (551)
..+.|+++|..|+|||||+++++..... ..+..++..+. ...++.. .+...|. ...++|.|+..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~---------~~~v~v~~~~~-~~~~D~~---~~~~~~~~~~~l~~gcic~~~ 87 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKD---------EVKIAVIEGDV-ITKFDAE---RLRKYGAPAIQINTGKECHLD 87 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc---------CCeEEEEECCC-CCcccHH---HHHHcCCcEEEEcCCCcccCC
Confidence 4689999999999999999999976310 01222222111 1011110 1111111 11123333211
Q ss_pred CCCC----------ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC
Q psy11743 132 NSPV----------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD 201 (551)
Q Consensus 132 ~~~~----------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 201 (551)
...+ -..+.+|+|.|...... .+ .-..+..+.|+|+.. .-.. .........
T Consensus 88 ~~~~~~~l~~~~~~~~d~IiIEt~G~l~~~~-------~~-------~~~~~~~i~Vvd~~~-~d~~----~~~~~~~~~ 148 (207)
T TIGR00073 88 AHMVAHALEDLPLDDIDLLFIENVGNLVCPA-------DF-------DLGEHMRVVLLSVTE-GDDK----PLKYPGMFK 148 (207)
T ss_pred hHHHHHHHHHhccCCCCEEEEecCCCcCCCc-------cc-------ccccCeEEEEEecCc-ccch----hhhhHhHHh
Confidence 1100 13688999999322110 01 123466678888874 2111 111112234
Q ss_pred CcEEEEEcCCCCCCHH--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 202 DKIRIVLNKADMVDHQ--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.++|+||+|+.+.. ...+ .......+ .+..+++.+||+++.|+
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~-~~~~l~~~-----~~~~~i~~~Sa~~g~gv 195 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEK-MKADAKKI-----NPEAEIILMSLKTGEGL 195 (207)
T ss_pred hCCEEEEEHHHccccchhhHHH-HHHHHHHh-----CCCCCEEEEECCCCCCH
Confidence 7789999999998632 2222 22222222 24568999999999987
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-09 Score=89.80 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=69.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~Dl~ 214 (551)
.+.+|||+|... |.+++..+...+|+++++.|..+....+....|+..+.+ ....+.++.||||+.
T Consensus 48 klqiwdtagqer-----------frsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 48 KLQIWDTAGQER-----------FRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred EEEEeeccchHH-----------HhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 588999999875 788999999999999999999863344444667766664 345688999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++..+.+.-... +.. .-..|...+||++|.++
T Consensus 117 ~er~v~~ddg~k---la~---~y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 117 HERAVKRDDGEK---LAE---AYGIPFMETSAKTGFNV 148 (192)
T ss_pred hhhccccchHHH---HHH---HHCCCceeccccccccH
Confidence 754332211111 111 11235677999999988
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-08 Score=90.31 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=46.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~ 366 (551)
.+++++|.+|+||||++|+|.+.. ...++..+++|+.. .....+..+.++||||..+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRD--RAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCc--eEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 479999999999999999999987 35677788888532 24446667889999998654
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-08 Score=88.11 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=70.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK~D 212 (551)
..+.+||..|... ..+....+...|+++++|+|+.+....+.....++.+ ...+.|+++.+||-|
T Consensus 69 ~~l~fwdlgGQe~-----------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd 137 (197)
T KOG0076|consen 69 APLSFWDLGGQES-----------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQD 137 (197)
T ss_pred ceeEEEEcCChHH-----------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhh
Confidence 4589999999865 4566777889999999999998633222222222222 235899999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+-+..+..+ +...+. +......+..++.++||++|.|+
T Consensus 138 ~q~~~~~~E-l~~~~~-~~e~~~~rd~~~~pvSal~gegv 175 (197)
T KOG0076|consen 138 LQNAMEAAE-LDGVFG-LAELIPRRDNPFQPVSALTGEGV 175 (197)
T ss_pred hhhhhhHHH-HHHHhh-hhhhcCCccCccccchhhhcccH
Confidence 976544333 222332 23344667778899999999998
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.8e-08 Score=89.55 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=33.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF 95 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~ 95 (551)
...+++++|.+|+|||||+|+|++.....+...++.|++..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~ 139 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ 139 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE
Confidence 46889999999999999999999987655566666666654
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-08 Score=85.91 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=49.2
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~~ 367 (551)
+|+++|.+|+||||++|+|++.+ ...++..+++|+... ..+.+..+.++||||+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc--cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 58999999999999999999976 478999999997543 34578888999999998754
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=100.70 Aligned_cols=132 Identities=25% Similarity=0.328 Sum_probs=86.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....|+++|.-.+|||+|+..|.++..+... ..+.. +++-....+.+ .|-+....-..+.+.
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~---~~~e~~lrytD~l~~E~e-------------Rg~sIK~~p~Tl~l~ 190 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFS---KNTEADLRYTDTLFYEQE-------------RGCSIKSTPVTLVLS 190 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecccccc---ccccccccccccchhhHh-------------cCceEeecceEEEEe
Confidence 3457999999999999999999987753221 11111 11100000000 000000000000000
Q ss_pred -C-CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 133 -S-PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 133 -~-~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
. .--.-++++||||+.+ |...+...+..+|++++|+|+.. +.+-...++++..-+...|+.+|+||
T Consensus 191 D~~~KS~l~nilDTPGHVn-----------F~DE~ta~l~~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~~~i~vviNK 258 (971)
T KOG0468|consen 191 DSKGKSYLMNILDTPGHVN-----------FSDETTASLRLSDGVVLVVDVAE-GVMLNTERIIKHAIQNRLPIVVVINK 258 (971)
T ss_pred cCcCceeeeeeecCCCccc-----------chHHHHHHhhhcceEEEEEEccc-CceeeHHHHHHHHHhccCcEEEEEeh
Confidence 0 0013478999999986 77788888999999999999996 88877788888888889999999999
Q ss_pred CCCC
Q psy11743 211 ADMV 214 (551)
Q Consensus 211 ~Dl~ 214 (551)
+|.+
T Consensus 259 iDRL 262 (971)
T KOG0468|consen 259 VDRL 262 (971)
T ss_pred hHHH
Confidence 9975
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=89.38 Aligned_cols=140 Identities=21% Similarity=0.149 Sum_probs=76.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCC--CccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
+|+++|.+||||||++|.+.+..+.. ...|.++.. ..+.+++. .+.++||||..... ...... +..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~---~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~e----~~~ 72 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE---EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP--GTAGQE----WMD 72 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc---ccCCccccccceeEEEECCEEEEEEEEeCCCcccCC--ccchhH----HHH
Confidence 78999999999999999999887532 224444321 22344553 45689999975421 111111 111
Q ss_pred hhhhhccccCcc-------cccc-----------c-----ccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHH
Q psy11743 383 RFQCSLVNSPVL-------KGKV-----------L-----QTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAY 439 (551)
Q Consensus 383 ~~~~~~~~~~~~-------~~~~-----------~-----~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~ 439 (551)
....++..+|+. .+.+ . ....+|.|+|+||+|++.. +.......+.
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~-----------~~~~~~~~~~ 141 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH-----------RFAPRHVLSV 141 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc-----------ccccHHHHHH
Confidence 122234445432 1110 0 1356888999999999321 0000001111
Q ss_pred HHHHHHhccchhhh--ccchH-HHHHHHHHHH
Q psy11743 440 IISALRKDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 440 ~~~~l~~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
+.+.. ..+|.+.+ ++|.+ ++++..+...
T Consensus 142 ~~~~~-~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 142 LVRKS-WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred HHHHh-cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 21111 23455555 78888 8888777753
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-07 Score=86.09 Aligned_cols=110 Identities=24% Similarity=0.377 Sum_probs=69.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
++.|+++|..++|||+|+-.|......+.-++.+|- .+ .-.+|+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn----~a-----------------~~r~gs--------------- 81 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN----EA-----------------TYRLGS--------------- 81 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccc----ee-----------------eEeecC---------------
Confidence 468999999999999999998876532211111111 00 001222
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHh---ccCEEEEEEeCCCCCCChHHHH----HHHHHh-----CCCCc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE---RVDRIILLFDAHKLDISDEFRR----SIEALR-----GHDDK 203 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~---~aD~il~VvDa~~~~~~~~~~~----~l~~l~-----~~~~~ 203 (551)
..+++||-||+.. ....+..+.. ++-+|+||+|+.. +....+. +...+. ....|
T Consensus 82 -~~~~LVD~PGH~r-----------lR~kl~e~~~~~~~akaiVFVVDSa~--f~k~vrdvaefLydil~~~~~~~~~~~ 147 (238)
T KOG0090|consen 82 -ENVTLVDLPGHSR-----------LRRKLLEYLKHNYSAKAIVFVVDSAT--FLKNVRDVAEFLYDILLDSRVKKNKPP 147 (238)
T ss_pred -cceEEEeCCCcHH-----------HHHHHHHHccccccceeEEEEEeccc--cchhhHHHHHHHHHHHHhhccccCCCC
Confidence 3479999999975 2334444444 8999999999873 2222222 223332 34678
Q ss_pred EEEEEcCCCCCC
Q psy11743 204 IRIVLNKADMVD 215 (551)
Q Consensus 204 vilVlNK~Dl~~ 215 (551)
++++.||.|+..
T Consensus 148 vLIaCNKqDl~t 159 (238)
T KOG0090|consen 148 VLIACNKQDLFT 159 (238)
T ss_pred EEEEecchhhhh
Confidence 999999999974
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-08 Score=91.54 Aligned_cols=52 Identities=21% Similarity=0.152 Sum_probs=41.0
Q ss_pred EEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEec-CCCccccCCceeec
Q psy11743 311 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYD-EREGSVPGNALVVD 365 (551)
Q Consensus 311 ~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~-~~~~~l~dt~gi~~ 365 (551)
++|.+|+||||++|+|.+... .++..+++|+. ..+.++ +.++.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP---KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc---cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 579999999999999999873 56777777742 234456 78889999999854
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-08 Score=96.13 Aligned_cols=177 Identities=20% Similarity=0.222 Sum_probs=108.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|...|.-++|||||+-.|+-.+ ..++.+.|+.-..+..+.-..+.....+| .-||-.- .+. ..+.+|
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~---~DDG~G~tR~~ldv~kHEverGlsa~iS~---~v~Gf~d-gk~--~rlknP 186 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGR---LDDGDGATRSYLDVQKHEVERGLSADISL---RVYGFDD-GKV--VRLKNP 186 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecC---CCCCCcchhhhhhhhhHHHhhccccceeE---EEEEecC-Cce--EeecCc
Confidence 34678999999999999999887554 25555555433222111110000000000 0111000 000 112222
Q ss_pred C------------ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCC
Q psy11743 135 V------------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGH 200 (551)
Q Consensus 135 ~------------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 200 (551)
+ -+-+.+|||.|+.. |.+.+..-+ +..|..++++.|.+ +.+...++.+..+...
T Consensus 187 ld~aE~~~vv~~aDklVsfVDtvGHEp-----------wLrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~ 254 (527)
T COG5258 187 LDEAEKAAVVKRADKLVSFVDTVGHEP-----------WLRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAM 254 (527)
T ss_pred ccHHHHhHhhhhcccEEEEEecCCccH-----------HHHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhh
Confidence 2 03478999999975 555554433 78999999999986 8888888888887788
Q ss_pred CCcEEEEEcCCCCCCHHHHHHH---HHHHHHHccccc------------------CCCCceEEEecccCCCCC
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRV---YGALMWSLGKVL------------------QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~---~~~~~~~l~~l~------------------~~~~~~~v~iSa~~g~~~ 252 (551)
..|+|+|++|+|+.+++....+ +.+.....+++. +...+|++++||.+|.|+
T Consensus 255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gl 327 (527)
T COG5258 255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL 327 (527)
T ss_pred cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccH
Confidence 8999999999999987654332 223332222211 233578999999999987
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.7e-08 Score=86.69 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 92 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt 92 (551)
.+++++|.+|+|||||+|+|++.....+...++.|+
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~ 119 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTK 119 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCccc
Confidence 389999999999999999999988654444444443
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=93.20 Aligned_cols=69 Identities=14% Similarity=0.048 Sum_probs=34.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHH---HHH--hccCEEEEEEeCCCCCCChHH--HHHH---HHHhCCCCcEEEE
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLE---WFA--ERVDRIILLFDAHKLDISDEF--RRSI---EALRGHDDKIRIV 207 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~---~~~--~~aD~il~VvDa~~~~~~~~~--~~~l---~~l~~~~~~vilV 207 (551)
.+.++||||+.+-.. +..... ..+ ...-++++++|+.. -.+... ..++ ....+.+.|.+.|
T Consensus 92 ~y~l~DtPGQiElf~--------~~~~~~~i~~~L~~~~~~~~v~LvD~~~-~~~~~~f~s~~L~s~s~~~~~~lP~vnv 162 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT--------HSDSGRKIVERLQKNGRLVVVFLVDSSF-CSDPSKFVSSLLLSLSIMLRLELPHVNV 162 (238)
T ss_dssp SEEEEE--SSHHHHH--------HSHHHHHHHHTSSS----EEEEEE-GGG--SSHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cEEEEeCCCCEEEEE--------echhHHHHHHHHhhhcceEEEEEEeccc-ccChhhHHHHHHHHHHHHhhCCCCEEEe
Confidence 689999999875211 111222 122 23558999999984 222211 1111 1123568999999
Q ss_pred EcCCCCCC
Q psy11743 208 LNKADMVD 215 (551)
Q Consensus 208 lNK~Dl~~ 215 (551)
+||+|+++
T Consensus 163 lsK~Dl~~ 170 (238)
T PF03029_consen 163 LSKIDLLS 170 (238)
T ss_dssp E--GGGS-
T ss_pred eeccCccc
Confidence 99999998
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-07 Score=93.70 Aligned_cols=68 Identities=26% Similarity=0.273 Sum_probs=61.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..++|+||||+.+ |.+-+.+.+.-+|..++|+|+.+ ++.++...+++.++-.+.|++-.+||+|....
T Consensus 81 ~~iNLLDTPGHeD-----------FSEDTYRtLtAvDsAvMVIDaAK-GiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 81 CLVNLLDTPGHED-----------FSEDTYRTLTAVDSAVMVIDAAK-GIEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred eEEeccCCCCccc-----------cchhHHHHHHhhheeeEEEeccc-CccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 4589999999987 66777888889999999999997 99999999999999999999999999998753
|
|
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.3e-07 Score=84.40 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=81.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCC---CCCC--CCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPG---IHIG--PEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~---~~~~--~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
.+.|++||++|.|||||+|.|....+.. .... |.|.|...-.+.+.- ++-|.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi-------------eE~gV---------- 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI-------------EEKGV---------- 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee-------------eecce----------
Confidence 3679999999999999999999765321 1111 222222222222211 11111
Q ss_pred cCCCCccCeEEEeCCCCCCCcccc--cccccc-hHHHHHHHH--------------hccCEEEEEEeCCCCCCChHHHHH
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQR--VDRGYD-FTGVLEWFA--------------ERVDRIILLFDAHKLDISDEFRRS 193 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~--~~~~~~-~~~~~~~~~--------------~~aD~il~VvDa~~~~~~~~~~~~ 193 (551)
-.++++|||||+.+..... .+.-.. +.++...++ .+.+++|+.+.++.-.+...+.++
T Consensus 103 -----klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDief 177 (336)
T KOG1547|consen 103 -----KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEF 177 (336)
T ss_pred -----EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHH
Confidence 1468999999998743210 000000 111111121 467899999999865778888888
Q ss_pred HHHHhCCCCcEEEEEcCCCCCCHHHH
Q psy11743 194 IEALRGHDDKIRIVLNKADMVDHQQL 219 (551)
Q Consensus 194 l~~l~~~~~~vilVlNK~Dl~~~~~~ 219 (551)
++.|.+. ..++-|+-|+|.+.-++.
T Consensus 178 lkrLt~v-vNvvPVIakaDtlTleEr 202 (336)
T KOG1547|consen 178 LKRLTEV-VNVVPVIAKADTLTLEER 202 (336)
T ss_pred HHHHhhh-heeeeeEeecccccHHHH
Confidence 8877653 458889999999875543
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=85.81 Aligned_cols=127 Identities=11% Similarity=0.096 Sum_probs=70.1
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhhhhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCS 387 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~ 387 (551)
+|+++|.+|+||||++|.|.|..- + ..+|... .+... .++||||...... .+.. ....+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~----~---~~~~~~v--~~~~~--~~iDtpG~~~~~~------~~~~----~~~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT----L---ARKTQAV--EFNDK--GDIDTPGEYFSHP------RWYH----ALITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc----c---CccceEE--EECCC--CcccCCccccCCH------HHHH----HHHHH
Confidence 699999999999999999987641 1 1222222 22222 2799999864431 1111 11122
Q ss_pred ccccCc-------cccccc-----c--cccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchhhh
Q psy11743 388 LVNSPV-------LKGKVL-----Q--TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFG 453 (551)
Q Consensus 388 ~~~~~~-------~~~~~~-----~--~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 453 (551)
+..+|+ ..+.+. . ....+.++++||+|++-. ..+ ....+...+....|++++
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-------------~~~-~~~~~~~~~~~~~p~~~~ 127 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-------------DVA-ATRKLLLETGFEEPIFEL 127 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-------------cHH-HHHHHHHHcCCCCCEEEE
Confidence 333332 212111 1 124566888999998311 111 112222333222477767
Q ss_pred --ccchH-HHHHHHHHHHH
Q psy11743 454 --KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 454 --~~~~~-~~l~~~~~~~~ 469 (551)
++|.+ +++++.+.+..
T Consensus 128 Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 128 NSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred ECCCccCHHHHHHHHHHhc
Confidence 88888 99998887754
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.6e-07 Score=94.07 Aligned_cols=139 Identities=20% Similarity=0.236 Sum_probs=93.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCC-CCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPG-IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~-~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..++.|+++|+||+||||||.+|+.+-... +....+ .++++. +.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiTvvs-gK------------------------------ 111 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PITVVS-GK------------------------------ 111 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceEEee-cc------------------------------
Confidence 355678899999999999999999864210 111111 222221 11
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKA 211 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~ 211 (551)
.+.++++.+|. + ..++.....-||+||+++|+. .++.-+..+++..+..++.| ++-|++..
T Consensus 112 ---~RRiTflEcp~--D------------l~~miDvaKIaDLVlLlIdgn-fGfEMETmEFLnil~~HGmPrvlgV~Thl 173 (1077)
T COG5192 112 ---TRRITFLECPS--D------------LHQMIDVAKIADLVLLLIDGN-FGFEMETMEFLNILISHGMPRVLGVVTHL 173 (1077)
T ss_pred ---eeEEEEEeChH--H------------HHHHHhHHHhhheeEEEeccc-cCceehHHHHHHHHhhcCCCceEEEEeec
Confidence 05699999993 2 223445567899999999998 58888888999999988888 66699999
Q ss_pred CCCCHHHHHH----HHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 212 DMVDHQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 212 Dl~~~~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
|+.......+ .+...||.-- .+++..+|+|...+
T Consensus 174 Dlfk~~stLr~~KKrlkhRfWtEi----yqGaKlFylsgV~n 211 (1077)
T COG5192 174 DLFKNPSTLRSIKKRLKHRFWTEI----YQGAKLFYLSGVEN 211 (1077)
T ss_pred ccccChHHHHHHHHHHhhhHHHHH----cCCceEEEeccccc
Confidence 9986543322 2334566422 24556677776543
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=89.51 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=39.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC----CCcccccCCCcccceE---EEEec--------------CCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD----FPGIHIGPEPTTDRFI---AVMYD--------------EREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~----~~~~~v~~~~~~tr~~---~~~~~--------------~~~~~l~dt~gi~ 364 (551)
++|+++|.+|+||||++|+|.+.. +........+++|... ...+. +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 368999999999999999999741 2223444455666321 22232 5678899999973
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-07 Score=90.03 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC-CccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER-EGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~-~~~l~dt~gi~~~ 366 (551)
..++|+++|.+|+||||++|.|.+.. ..+...+.+|. ...+.+++. .+.++||||..+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD---VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch---hccCCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 34799999999999999999999986 33444444442 122334443 8889999998653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=95.84 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=33.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+++|.||||||||+|+|++.....+...|+.|+..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~ 159 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ 159 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE
Confidence 4578999999999999999999999876666667666554
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=85.95 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=36.2
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+++++|.+||||||++|++.+..+........+..+...........+.++||||..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 789999999999999999999875322111111112111122234456789999965
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.2e-07 Score=87.77 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=55.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||.|-|...++- ....-+|.+++|.-+. ..+...-+-.-+. ...=++|+||+|.-..
T Consensus 144 ~DvIIVETVGvGQsev--------------~I~~~aDt~~~v~~pg---~GD~~Q~iK~Gim--EiaDi~vINKaD~~~A 204 (323)
T COG1703 144 YDVIIVETVGVGQSEV--------------DIANMADTFLVVMIPG---AGDDLQGIKAGIM--EIADIIVINKADRKGA 204 (323)
T ss_pred CCEEEEEecCCCcchh--------------HHhhhcceEEEEecCC---CCcHHHHHHhhhh--hhhheeeEeccChhhH
Confidence 4588999999876331 1236799999998664 2333211111111 2345899999996544
Q ss_pred HHHHHHHHHHHHHcc--cccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLG--KVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~--~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+...+.+........ .-...+.+|++.+||..|+|+
T Consensus 205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi 242 (323)
T COG1703 205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGI 242 (323)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCH
Confidence 333222222222121 111234568899999999988
|
|
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-07 Score=86.40 Aligned_cols=91 Identities=26% Similarity=0.429 Sum_probs=60.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|-|+||||||+..+++..... ....|+...+ +|| +-.|..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~Sea-------A~yeFTTLtc------IpG-----vi~y~g-------------- 108 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEA-------ASYEFTTLTC------IPG-----VIHYNG-------------- 108 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhh-------hceeeeEEEe------ecc-----eEEecC--------------
Confidence 34689999999999999999999765311 1111222111 111 111211
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
..+.++|.||+.++..+.-.++. ++-..+..||+|++|+|++.
T Consensus 109 --a~IQllDLPGIieGAsqgkGRGR----QviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 109 --ANIQLLDLPGIIEGASQGKGRGR----QVIAVARTADLILMVLDATK 151 (364)
T ss_pred --ceEEEecCcccccccccCCCCCc----eEEEEeecccEEEEEecCCc
Confidence 45899999999988766554443 33445678999999999985
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-07 Score=89.95 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
...++++|.+|+|||||+|+|++...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 46899999999999999999998653
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-07 Score=93.75 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=71.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+++.|||-||||||||+|+|+... .....-|-.|-+....+.+-.+. .+.+++.-. +|.-...+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~---------rl~~L~~~~--~c~~k~~~--- 66 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDC---------RLDELAEIV--KCPPKIRP--- 66 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCch---------HHHHHHHhc--CCCCcEEe---
Confidence 3679999999999999999999988 44566777777777666554321 122222100 00001112
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-.+.+||.+|+..+..+.. ..-.+...-++.+|+|+.|+|+..
T Consensus 67 -~~ve~vDIAGLV~GAs~Ge----GLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 -APVEFVDIAGLVKGASKGE----GLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred -eeeEEEEecccCCCcccCC----CcchHHHHhhhhcCeEEEEEEecC
Confidence 3489999999998765433 344445556789999999999984
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-07 Score=94.02 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+++|.+|||||||+|+|++.....+...|++|+..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~ 156 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ 156 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce
Confidence 3578999999999999999999998876666666666544
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.1e-07 Score=82.14 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|--|+||||++..|--.+. +.+ .||-.-. ..+. |.+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~--vtt--vPTiGfnVE~v~------------------ykn------------- 60 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEI--VTT--VPTIGFNVETVE------------------YKN------------- 60 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCc--ccC--CCccccceeEEE------------------Ecc-------------
Confidence 457899999999999999999876553 222 2332111 1111 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHhC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~---~~~~vilVlN 209 (551)
.++++||..|... +......+..+.+.+|||+|..+..-..+.+ ++...+.. .+.|+++..|
T Consensus 61 ---~~f~vWDvGGq~k-----------~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aN 126 (181)
T KOG0070|consen 61 ---ISFTVWDVGGQEK-----------LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFAN 126 (181)
T ss_pred ---eEEEEEecCCCcc-----------cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEec
Confidence 4589999999864 4555677889999999999998532222222 33333332 3678999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.|+...-...++ ...+ .+..+...++ .+-.++|.+|.|+
T Consensus 127 KqD~~~als~~ei-~~~L-~l~~l~~~~w-~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 127 KQDLPGALSAAEI-TNKL-GLHSLRSRNW-HIQSTCAISGEGL 166 (181)
T ss_pred hhhccccCCHHHH-HhHh-hhhccCCCCc-EEeeccccccccH
Confidence 9998743222221 1111 2333334333 4556778777776
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-07 Score=85.30 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=61.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~Dl 213 (551)
..+.||||||... +......++..+|++|+|+|+++.........++..+.. ...|+++|+||+|+
T Consensus 29 v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL 97 (176)
T PTZ00099 29 VRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL 97 (176)
T ss_pred EEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 3589999999864 444556678999999999999852212222344444332 35678999999999
Q ss_pred CCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.....+.. ......... ....+.+||++|.|+
T Consensus 98 ~~~~~v~~~e~~~~~~~~-------~~~~~e~SAk~g~nV 130 (176)
T PTZ00099 98 GDLRKVTYEEGMQKAQEY-------NTMFHETSAKAGHNI 130 (176)
T ss_pred ccccCCCHHHHHHHHHHc-------CCEEEEEECCCCCCH
Confidence 64221110 011111111 124567999999988
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-07 Score=82.36 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=42.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecC--CCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDE--REGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~--~~~~l~dt~gi~ 364 (551)
++|+++|.+|+||||++|.|.+.. .+.+..+++++... +..++ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK---FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 589999999999999999999987 45566666665322 44555 557789999943
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.1e-07 Score=84.54 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=51.3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH-
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH- 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~- 216 (551)
..++|+|.|..- ... +. . .-+|.++.|+|+.+ ... ........+ ...-++|+||+|+.+.
T Consensus 93 D~iiIEt~G~~l------~~~--~~----~--~l~~~~i~vvD~~~-~~~-~~~~~~~qi---~~ad~~~~~k~d~~~~~ 153 (199)
T TIGR00101 93 EMVFIESGGDNL------SAT--FS----P--ELADLTIFVIDVAA-GDK-IPRKGGPGI---TRSDLLVINKIDLAPMV 153 (199)
T ss_pred CEEEEECCCCCc------ccc--cc----h--hhhCcEEEEEEcch-hhh-hhhhhHhHh---hhccEEEEEhhhccccc
Confidence 578999999521 111 11 1 12588999999985 211 111111122 2334899999999852
Q ss_pred -HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 -QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 -~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++.. .......+ .+.++++.+||++|.|+
T Consensus 154 ~~~~~~-~~~~~~~~-----~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 154 GADLGV-MERDAKKM-----RGEKPFIFTNLKTKEGL 184 (199)
T ss_pred cccHHH-HHHHHHHh-----CCCCCEEEEECCCCCCH
Confidence 22222 12222221 34678899999999998
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=90.67 Aligned_cols=147 Identities=22% Similarity=0.307 Sum_probs=87.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccc------ccccccccceeE
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG------KFGNSFLNRFQC 128 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~------~~g~~~~~~~~~ 128 (551)
+.|..+|.|--|+|||||+|+|+... ...++.++.....+..+++.-+.... ..-....++|.|
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~----------~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiC 72 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNA----------AGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCIC 72 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcc----------CCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCcc
Confidence 45889999999999999999999642 22345555554444444442221100 011234568999
Q ss_pred EecCCCCc------------cCeEEEeCCCCCCCcccccccccchHHHHHH-H---HhccCEEEEEEeCCCCCC-C----
Q psy11743 129 SLVNSPVL------------KGISIVDTPGILSGEKQRVDRGYDFTGVLEW-F---AERVDRIILLFDAHKLDI-S---- 187 (551)
Q Consensus 129 ~~~~~~~l------------~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~-~---~~~aD~il~VvDa~~~~~-~---- 187 (551)
|++..++. -...+|.|.|+.++.. +.+...+ . .-..|.++.|+|+.+... .
T Consensus 73 Cs~~~dl~~~l~~l~~~~~~~d~IvIEtsG~a~P~~--------i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~ 144 (341)
T TIGR02475 73 CTVADDFIPTMTKLLARRQRPDHILIETSGLALPKP--------LVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAAD 144 (341)
T ss_pred ccCcHHHHHHHHHHHhccCCCCEEEEeCCCCCCHHH--------HHHHhcCccccceEEeeeEEEEEECchhhhhccccc
Confidence 98775541 2567999999987532 2222211 1 126788999999974210 0
Q ss_pred -----------------hH-HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHH
Q psy11743 188 -----------------DE-FRRSIEALRGHDDKIRIVLNKADMVDHQQLMRV 222 (551)
Q Consensus 188 -----------------~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~ 222 (551)
.. ...+..++. ..-++|+||+|+++.+++.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~~~l~~~ 194 (341)
T TIGR02475 145 PDALDAQRAADDNLDHETPLEELFEDQLA---CADLVILNKADLLDAAGLARV 194 (341)
T ss_pred hhhhhhhccccccccccchHHHHHHHHHH---hCCEEEEeccccCCHHHHHHH
Confidence 00 011233443 335899999999998766543
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-07 Score=85.85 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=39.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEe---cCCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMY---DEREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~---~~~~~~l~dt~gi~ 364 (551)
|+++++|.+|+||||++|+|.+..+. ....+++|. ...+.. .+..+.++||||..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA---AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc---cccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 57999999999999999999988642 223344443 222333 25678899999963
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-07 Score=86.97 Aligned_cols=141 Identities=24% Similarity=0.292 Sum_probs=76.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccc---cccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFG---NSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g---~~~~~~~~~~~~~~ 133 (551)
|.++|.|-.|||||||+|+|+.... ...+..++.....+..+++.. +...| ....++|.||++..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~---------~~~~~~vI~ne~g~~~iD~~~---l~~~~~~v~~l~~gcicc~~~~ 68 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNR---------QGERVAVIVNEFGEVNIDAEL---LQEDGVPVVELNNGCICCTLRD 68 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHT---------TTS-EEEEECSTTSTHHHHHH---HHTTT-EEEEECTTTESS-TTS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhc---------CCceeEEEEccccccccchhh---hcccceEEEEecCCCcccccHH
Confidence 6789999999999999999995211 122344444433322232211 11122 22334577766444
Q ss_pred CC-------------ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChHHHHHHHHHhC
Q psy11743 134 PV-------------LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDEFRRSIEALRG 199 (551)
Q Consensus 134 ~~-------------l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~~~~~l~~l~~ 199 (551)
++ --...+|.|.|+.++.. + -+........-..+.++.|+|+.++. .......+...+..
T Consensus 69 ~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~--l----~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ 142 (178)
T PF02492_consen 69 DLVEALRRLLREYEERPDRIIIETSGLADPAP--L----ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF 142 (178)
T ss_dssp -HHHHHHHHCCCCHGC-SEEEEEEECSSGGGG--H----HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCCcCEEEECCccccccch--h----hhccccccccccccceeEEeccccccccccchhhhhhcchh
Confidence 33 12578999999876432 1 01112222235678999999996421 11111233444443
Q ss_pred CCCcEEEEEcCCCCCCHHH
Q psy11743 200 HDDKIRIVLNKADMVDHQQ 218 (551)
Q Consensus 200 ~~~~vilVlNK~Dl~~~~~ 218 (551)
. -++|+||+|+++.++
T Consensus 143 A---DvIvlnK~D~~~~~~ 158 (178)
T PF02492_consen 143 A---DVIVLNKIDLVSDEQ 158 (178)
T ss_dssp ----SEEEEE-GGGHHHH-
T ss_pred c---CEEEEeccccCChhh
Confidence 3 488999999998763
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=75.84 Aligned_cols=135 Identities=18% Similarity=0.278 Sum_probs=82.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..-+|+++|.-++|||+++..|+-.+.- ......||-..+.+..-..+. | .+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~-~~~e~~pTiEDiY~~svet~r--------------g----ar--------- 59 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHV-PGTELHPTIEDIYVASVETDR--------------G----AR--------- 59 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCC-CCCccccchhhheeEeeecCC--------------C----hh---------
Confidence 3468999999999999999999855431 122333454443332221111 1 01
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
..+.+-||.|+..+. .+.-+.+.+-+|+.++|.++.++........+-.++.+ ...|++++.||
T Consensus 60 --E~l~lyDTaGlq~~~----------~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~ 127 (198)
T KOG3883|consen 60 --EQLRLYDTAGLQGGQ----------QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANK 127 (198)
T ss_pred --heEEEeecccccCch----------hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence 458999999998741 33556778899999999998863222222222233332 34689999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc
Q psy11743 211 ADMVDHQQLMRVYGALMWSL 230 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l 230 (551)
+|+..+.++.-. .+..|..
T Consensus 128 rdr~~p~~vd~d-~A~~Wa~ 146 (198)
T KOG3883|consen 128 RDRAEPREVDMD-VAQIWAK 146 (198)
T ss_pred hhcccchhcCHH-HHHHHHh
Confidence 999866544222 2444543
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-07 Score=88.19 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=40.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCC--c-ccccCCCcccceEE-EEe-cCCCccccCCceeecCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFP--G-IHIGPEPTTDRFIA-VMY-DEREGSVPGNALVVDPK 367 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~--~-~~v~~~~~~tr~~~-~~~-~~~~~~l~dt~gi~~~~ 367 (551)
|++++++|.+|+||||++|+|++.... + ++++ ...+|+... ... ....+.++||||+....
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-ccccccCceeeecCCCCCceEEeCCCCCccc
Confidence 468999999999999999999996431 1 2223 223343221 221 23468899999987643
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-07 Score=98.64 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=70.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC-----CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF-----PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~-----~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..|+++|.+|||||||+|+|++... +.++..|++|++.... ..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~-~~------------------------------- 202 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI-PL------------------------------- 202 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE-Ee-------------------------------
Confidence 5899999999999999999998642 2334445444433211 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
...+.++||||+.... .+..-.. .+.+... -.....+.+.+|..+ .+.-.....++.+......+.+.++
T Consensus 203 ----~~~~~l~DtPG~~~~~--~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~q-~~~~ggl~~~d~~~~~~~~~~~~~~ 274 (360)
T TIGR03597 203 ----DDGHSLYDTPGIINSH--QMAHYLD-KKDLKYITPKKEIKPKTYQLNPNQ-TLFLGGLARFDYLKGEKTSFTFYVS 274 (360)
T ss_pred ----CCCCEEEECCCCCChh--HhhhhcC-HHHHhhcCCCCccCceEEEeCCCC-EEEEceEEEEEEecCCceEEEEEcc
Confidence 0347899999998632 1111000 1111111 145677888888775 3333333333444444556777888
Q ss_pred CCCCCCHH
Q psy11743 210 KADMVDHQ 217 (551)
Q Consensus 210 K~Dl~~~~ 217 (551)
+.+.++..
T Consensus 275 ~~~~~h~t 282 (360)
T TIGR03597 275 NELNIHRT 282 (360)
T ss_pred CCceeEee
Confidence 88877643
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=87.12 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|.|+|.+|+|||||++++++.-
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999863
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-06 Score=89.68 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc
Q psy11743 14 EMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 93 (551)
Q Consensus 14 ~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~ 93 (551)
-...++...|.+.|.+.+..|... +.-.. ..+..|+|++||.-++||||.+..+....++.-..+.--|+.
T Consensus 275 i~~kklKkSLIDMYSEVLD~Ls~Y---D~sYn------t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRa 345 (980)
T KOG0447|consen 275 IHHRKLKKSLIDMYSEVLDVLSDY---DASYN------TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRS 345 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc---ccccc------ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccC
Confidence 345667777888888776444432 21111 235679999999999999999999998876432233333554
Q ss_pred eEEEEEeCCCccccCC-----CCcc-----cc--------------cccccccccceeEEecCCCCccCeEEEeCCCCCC
Q psy11743 94 RFIAVMYDEREGSVPF-----SPLD-----KF--------------GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILS 149 (551)
Q Consensus 94 ~~~~i~~~~~~~~i~g-----~~~~-----~~--------------~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~ 149 (551)
.+-+... +....+.. ..|+ .+ .+-|-...+..+..++..|-|...++||.||+.+
T Consensus 346 PVKVTLs-EGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIs 424 (980)
T KOG0447|consen 346 PVKVTLS-EGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVIN 424 (980)
T ss_pred CeEEEec-cCcchhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhh
Confidence 4433221 11110100 0111 00 0111112222344567788899999999999987
Q ss_pred Ccccccc--cccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 150 GEKQRVD--RGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
.....+. ....+.+....++++.++||+++.-...+.... .-.+...+..+++..|+|++|+|+...
T Consensus 425 TvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 425 TVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 5432222 123456677888999999988875432111111 123444555788999999999998753
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=95.39 Aligned_cols=40 Identities=30% Similarity=0.303 Sum_probs=32.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF 95 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~ 95 (551)
..+|.++|.||||||||||+|+|+....+...|+.|....
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q 171 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ 171 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE
Confidence 3679999999999999999999999865656665555443
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-07 Score=86.03 Aligned_cols=57 Identities=18% Similarity=0.043 Sum_probs=38.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCccc-------------ccCCCcccc---eEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIH-------------IGPEPTTDR---FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~-------------v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~ 364 (551)
+|+++|.+|+||||++|+|.+....... .....++|. ......++..+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence 4899999999999999999988632111 011123332 22244566778899999975
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.8e-07 Score=90.33 Aligned_cols=143 Identities=19% Similarity=0.151 Sum_probs=89.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc----eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR----FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr----~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
-|+++|-||+||||++|.+...+ ..|+++|=||- .+........+++.|-||++.-.....+ +|. +
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak---PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G---LG~----~ 230 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK---PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG---LGL----R 230 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC---CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC---ccH----H
Confidence 37899999999999999999998 78999998884 2222235666889999999875533222 233 3
Q ss_pred hhhhccccCccc-------------------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHH
Q psy11743 384 FQCSLVNSPVLK-------------------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQA 438 (551)
Q Consensus 384 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~ 438 (551)
+.+.|+++-++. .-...-.+-+.++|+||.|.+... ...+...+
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-----------e~~~~~~~ 299 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-----------EELEELKK 299 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-----------HHHHHHHH
Confidence 444555553321 011111345679999999974321 11122333
Q ss_pred HHHHHHHhccch--hhhccchH-HHHHHHHHHHHHHH
Q psy11743 439 YIISALRKDMPS--VFGKEGKK-KELIKKLDEIYKQI 472 (551)
Q Consensus 439 ~~~~~l~~~~~~--~~~~~~~~-~~l~~~~~~~~~~~ 472 (551)
.+.+.. .|.+. +.+.++++ +.|+..+.+++...
T Consensus 300 ~l~~~~-~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 300 ALAEAL-GWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHHHhc-CCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 444333 33322 44478888 99999998877543
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-07 Score=82.14 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=36.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c--eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R--FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r--~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+||||||++|.+.+..+.. ...++.+ . ...+..++. .+.+.||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE---SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 479999999999999999999887532 2223222 1 222334433 46788999943
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.7e-07 Score=81.80 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=43.3
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
|+++|.+|+||||++|.|.+..+ ..+.+..+++|+.......+....++||||+.....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKV 60 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eeeecCCCCcceeEEEEEccCeEEEecCCCcccccc
Confidence 78999999999999999996543 255666677776444333344888999999866543
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-07 Score=88.49 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=60.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC--C-----------CcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD--F-----------PGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQF 370 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~--~-----------~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~ 370 (551)
+.|+++|.+++||||++++|++.. . ...+.....|+|. .....+++.++.++||||..+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 579999999999999999998751 0 0011112345553 222345678899999999752
Q ss_pred chhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccce-eEEEecccCCC
Q psy11743 371 RPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVA-RVYIGSFWDQP 416 (551)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~-~v~~~~~wd~~ 416 (551)
|+.....++..+|. ..|...++ ..++ .|+++||||+.
T Consensus 78 ---------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 78 ---------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred ---------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 34445555566653 33444443 3455 46779999983
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-07 Score=82.75 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=37.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
..+++++|.+|+||||++|++.+..+.. ...+..+.+. ...+..++. .+.+.||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 4689999999999999999999887532 1122222222 223344443 45678999954
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.9e-07 Score=76.69 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=89.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|--|+|||||+..|.+++..-+....+-.+.. +.+. | .
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~---v~~~-----------------g-~------------ 61 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKK---VEYD-----------------G-T------------ 61 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEE---Eeec-----------------C-c------------
Confidence 45689999999999999999999998853221111111111 1110 1 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHh---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~---~~~~~vilVlN 209 (551)
-+++++|..|... +.-....+.++.|.+++|+|..+-...++. .++.+.+. -...|+++-.|
T Consensus 62 ---f~LnvwDiGGqr~-----------IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfan 127 (185)
T KOG0074|consen 62 ---FHLNVWDIGGQRG-----------IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFAN 127 (185)
T ss_pred ---EEEEEEecCCccc-----------cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhh
Confidence 3489999999765 344566788999999999997752333322 23333333 34678999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|-|++......+..... .+..+ ......+-.+|++++.+.
T Consensus 128 kQdlltaa~~eeia~kl--nl~~l-rdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 128 KQDLLTAAKVEEIALKL--NLAGL-RDRSWHIQECSALSLEGS 167 (185)
T ss_pred hhHHHhhcchHHHHHhc--chhhh-hhceEEeeeCccccccCc
Confidence 99998643322211110 11111 112335566788877776
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=77.67 Aligned_cols=113 Identities=22% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.-++++.|--|+|||||++.|-..+.......-.||+..... .|
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I----------g~-------------------------- 63 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI----------GG-------------------------- 63 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee----------cC--------------------------
Confidence 457999999999999999988777655444555666554322 11
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
-.++-+|..|+.. -.+....++..+|.+++++|+.+.....+.+.-++.+. -...|+++..||+
T Consensus 64 -m~ftt~DLGGH~q-----------Arr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKI 131 (193)
T KOG0077|consen 64 -MTFTTFDLGGHLQ-----------ARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKI 131 (193)
T ss_pred -ceEEEEccccHHH-----------HHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccc
Confidence 4588999999864 35567788999999999999986444444433333332 2478999999999
Q ss_pred CCCCH
Q psy11743 212 DMVDH 216 (551)
Q Consensus 212 Dl~~~ 216 (551)
|....
T Consensus 132 d~p~a 136 (193)
T KOG0077|consen 132 DIPYA 136 (193)
T ss_pred cCCCc
Confidence 99754
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=91.37 Aligned_cols=116 Identities=25% Similarity=0.266 Sum_probs=75.4
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.....+|+++|.-|+||||||-+|++.++.. .-| +--+ .+.+|
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP-~rl~----------------------------------~i~IP 48 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVP-RRLP----------------------------------RILIP 48 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccc--ccc-ccCC----------------------------------ccccC
Confidence 3456799999999999999999999998731 111 0000 11111
Q ss_pred CCCc---cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChHHHHHHHHHhC-----CCCc
Q psy11743 133 SPVL---KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDEFRRSIEALRG-----HDDK 203 (551)
Q Consensus 133 ~~~l---~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~~~~~l~~l~~-----~~~~ 203 (551)
.+.. -..++|||+.-.+ -...+..-+++||+|++|.+..+.. +..-...|+-.+++ ++.|
T Consensus 49 advtPe~vpt~ivD~ss~~~-----------~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P 117 (625)
T KOG1707|consen 49 ADVTPENVPTSIVDTSSDSD-----------DRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP 117 (625)
T ss_pred CccCcCcCceEEEecccccc-----------hhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC
Confidence 1111 2378999973322 2445677789999999999877511 12222345555553 5689
Q ss_pred EEEEEcCCCCCCH
Q psy11743 204 IRIVLNKADMVDH 216 (551)
Q Consensus 204 vilVlNK~Dl~~~ 216 (551)
+|+|.||+|+...
T Consensus 118 VILvGNK~d~~~~ 130 (625)
T KOG1707|consen 118 VILVGNKSDNGDN 130 (625)
T ss_pred EEEEeeccCCccc
Confidence 9999999999753
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.4e-06 Score=86.31 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=81.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|..+|.|--|+|||||+|+|+... ...++.++.....+..+++.-+.....--....++|.||++..+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~----------~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~ 72 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQ----------HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNE 72 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcc----------cCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCch
Confidence 45899999999999999999999653 12233444443333333332111100001234458999987764
Q ss_pred Cc----------------cCeEEEeCCCCCCCcccccccccchHHHHH--HHH---hccCEEEEEEeCCCCCC-ChHHHH
Q psy11743 135 VL----------------KGISIVDTPGILSGEKQRVDRGYDFTGVLE--WFA---ERVDRIILLFDAHKLDI-SDEFRR 192 (551)
Q Consensus 135 ~l----------------~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~--~~~---~~aD~il~VvDa~~~~~-~~~~~~ 192 (551)
+. -...+|.|.|+.++.. +.+... ..+ -..|.++.|+|+.+... ......
T Consensus 73 l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~--------i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~ 144 (318)
T PRK11537 73 LEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP--------IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI 144 (318)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEECCCccCHHH--------HHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHH
Confidence 31 2468999999987432 111110 011 24688999999974211 011112
Q ss_pred HHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 193 SIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 193 ~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
...++... -++|+||+|+++..
T Consensus 145 ~~~Qi~~A---D~IvlnK~Dl~~~~ 166 (318)
T PRK11537 145 AQSQVGYA---DRILLTKTDVAGEA 166 (318)
T ss_pred HHHHHHhC---CEEEEeccccCCHH
Confidence 23344433 48899999999754
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.6e-07 Score=83.86 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=29.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 93 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~ 93 (551)
..++++++|.+|+|||||+|+|++.....+...++.|+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~ 152 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG 152 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee
Confidence 346899999999999999999999876444444444433
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=85.68 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=54.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc--CCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER--DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~--~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
--.|+|+|++++|||||+|.|+|. .+. +..+..+||..+.. ...... .+ .+
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~-~~~~~~~~T~gi~~-~~~~~~-------------~~----~~-------- 59 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFD-VMDTSQQTTKGIWM-WSVPFK-------------LG----KE-------- 59 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeE-ecCCCCCCccceEE-Eecccc-------------CC----Cc--------
Confidence 357999999999999999999998 443 22232344443221 111000 00 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAH 182 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~ 182 (551)
..+.++||||+.+..... . .......++. -+|++|+.++..
T Consensus 60 ---~~v~~lDteG~~~~~~~~--~---~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 60 ---HAVLLLDTEGTDGRERGE--F---EDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred ---ceEEEEecCCcCccccCc--h---hhhhHHHHHHHHHhCEEEEeccCc
Confidence 459999999998754321 0 1112222223 599999999886
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=80.32 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=35.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~ 364 (551)
.+++++|.+||||||++|.+.+..+... ..+..+.........++.. +.+.||||..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC-cCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 4799999999999999999998875211 1111111112223344433 5578999954
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-07 Score=94.61 Aligned_cols=98 Identities=13% Similarity=0.015 Sum_probs=61.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC-------------CcccccCCCcccce---EEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF-------------PGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~-------------~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
...+|+++|.+++|||||+|+|++..- .........|+|.. .....++.++.|+||||..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 456899999999999999999998620 01111222455542 2233467788999999953
Q ss_pred CCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------cccee-EEEecccCCC
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVAR-VYIGSFWDQP 416 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~-v~~~~~wd~~ 416 (551)
.|+.....++..+|+ ..|...|+ ..++. |+++||||+.
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence 234444555555553 23444443 34563 5779999983
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=7e-07 Score=82.37 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=38.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecCCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~~~~~l~dt~gi~~ 365 (551)
.+++++|.+||||||++|.+++..+....+...+.+.+. .........+.+.||||...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCc
Confidence 479999999999999999999887643322222222221 11222334567899999753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-07 Score=84.89 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=23.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...++++|++|||||||+|+|++..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999999999974
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=85.96 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=45.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
+++++|.||+||||++|.|.+.. ..++..+.+|. ...+.+++.++.++||||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~---~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK---SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 68999999999999999999886 55777888774 2234567888999999998754
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=80.17 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=38.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi 363 (551)
+++++|.+|+||||++|.|++.++ ..+..++++. ...+..++ ..+.+.||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF---DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 689999999999999999999874 3344555553 12233444 34678999994
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=80.49 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=35.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
++|+++|.+||||||+++.+.+..+..... +..+.+- ......++. .+.+.||||-.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL-STYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC-CceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 478999999999999999999886532111 1111111 111223333 45678999954
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.4e-07 Score=92.66 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=23.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPG 83 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~ 83 (551)
..++|+|++|||||||||+|++.....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~ 199 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELR 199 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccc
Confidence 368999999999999999999876543
|
|
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-07 Score=85.36 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=72.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+++|||..++|||+|+-.+....++ ....||- |...+ .+.++..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp---~~yvPTVFdnys~------------------------------~v~V~dg 50 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFP---EEYVPTVFDNYSA------------------------------NVTVDDG 50 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCc---ccccCeEEccceE------------------------------EEEecCC
Confidence 468999999999999999888776543 2222221 11110 0111100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH--HHHHHHHHhCC--CCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE--FRRSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~--~~~~l~~l~~~--~~~vilVlNK 210 (551)
-.-.+.+|||+|..+ +.+.---....+|++|+.++..+ +.+.+ ...|+..++.+ +.|+++|.+|
T Consensus 51 ~~v~L~LwDTAGqed-----------YDrlRplsY~~tdvfl~cfsv~~-p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk 118 (198)
T KOG0393|consen 51 KPVELGLWDTAGQED-----------YDRLRPLSYPQTDVFLLCFSVVS-PESFENVKSKWIPEIKHHCPNVPIILVGTK 118 (198)
T ss_pred CEEEEeeeecCCCcc-----------cccccccCCCCCCEEEEEEEcCC-hhhHHHHHhhhhHHHHhhCCCCCEEEEeeh
Confidence 012488999999876 22211125688999999898875 22222 24556555543 6899999999
Q ss_pred CCCCCH
Q psy11743 211 ADMVDH 216 (551)
Q Consensus 211 ~Dl~~~ 216 (551)
.||.++
T Consensus 119 ~DLr~d 124 (198)
T KOG0393|consen 119 ADLRDD 124 (198)
T ss_pred HHhhhC
Confidence 999853
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.2e-07 Score=83.83 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=37.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCc--cccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREG--SVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~--~l~dt~gi~~ 365 (551)
++|+++|.+|||||||+|.+.+..+...+..+..+.+. ...+..++..+ .+.||||...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 62 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER 62 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 37999999999999999999988753112222222222 12244455444 4789999643
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.3e-06 Score=71.31 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=88.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+.+|-.++||||++-.|.-... +..-||+. .+..|.| .+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~----~~~ipTvGFnvetVty------------------kN-------------- 60 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS----VTTIPTVGFNVETVTY------------------KN-------------- 60 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC----cccccccceeEEEEEe------------------ee--------------
Confidence 46799999999999999999875542 22222322 1222222 11
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH-HHHhC---CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI-EALRG---HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l-~~l~~---~~~~vilVlNK 210 (551)
-.+.++|..|... +....+.+......+|||+|+...+-.++.++-+ ..+.. ...++++..||
T Consensus 61 --~kfNvwdvGGqd~-----------iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANk 127 (180)
T KOG0071|consen 61 --VKFNVWDVGGQDK-----------IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANK 127 (180)
T ss_pred --eEEeeeeccCchh-----------hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecC
Confidence 3488999999865 5667788899999999999987522222222222 22221 25678888999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
-|+.+.....+ +... ..+..+.+.++ .+.+.++.+|.++
T Consensus 128 QDlp~A~~pqe-i~d~-leLe~~r~~~W-~vqp~~a~~gdgL 166 (180)
T KOG0071|consen 128 QDLPDAMKPQE-IQDK-LELERIRDRNW-YVQPSCALSGDGL 166 (180)
T ss_pred cccccccCHHH-HHHH-hccccccCCcc-EeeccccccchhH
Confidence 99975322222 1222 23444445555 3556677666655
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-07 Score=88.67 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=39.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccc------------------------------cCCCcccc---eEEEEecCCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHI------------------------------GPEPTTDR---FIAVMYDERE 354 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v------------------------------~~~~~~tr---~~~~~~~~~~ 354 (551)
+|+++|.+|+||||++|+|+... ++.. ....|+|+ .....+++.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDS--KSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCce
Confidence 48999999999999999998764 2222 11245553 2335567888
Q ss_pred ccccCCcee
Q psy11743 355 GSVPGNALV 363 (551)
Q Consensus 355 ~~l~dt~gi 363 (551)
+.++||||.
T Consensus 79 ~~liDTpG~ 87 (208)
T cd04166 79 FIIADTPGH 87 (208)
T ss_pred EEEEECCcH
Confidence 999999996
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-06 Score=79.85 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=37.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+||||||++|.|.+..+. ....+..+++. ...+..++. .+.+.||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999999988742 12222222221 223444443 46788999964
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.9e-07 Score=92.86 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
..++|+|++|||||||||+|++...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccc
Confidence 3689999999999999999999764
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.3e-06 Score=80.16 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=43.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecCCCccccCCceeecCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
.+|+++|.+|+||||++|+|+|...+.+..+..+.|+. ......++..+.++||||+.++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 37999999999999999999999854454455554543 223467889999999999988763
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=81.43 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFP 332 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~ 332 (551)
-++++++|.+||||||++|.+.+..+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~ 30 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFN 30 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 368999999999999999999988653
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=81.82 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=39.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
..++++++|.+|+||||++|.|.+..+. .+.+..+.. ...+.+++..+.+.||||..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~~t~g~~-~~~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID--TISPTLGFQ-IKTLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC--CcCCccccc-eEEEEECCEEEEEEECCCCH
Confidence 4679999999999999999999988542 222222211 22234456677899999964
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=80.64 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=35.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c-eEEEEecCC--CccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+|+++|.+||||||++|++.+..+.. ...+.++ . ......++. .+.+.||||...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD---DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc---ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 68999999999999999999887432 1112222 1 222333333 455789999654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.3e-07 Score=92.94 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EE--EEec-----------------CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IA--VMYD-----------------EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~--~~~~-----------------~~~~~l~dt~gi~ 364 (551)
...+++++|.|||||||++|+|.+.. +.+++.|+||+. .. +.+. +.++.++||||+.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~---~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ---VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc---ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 56789999999999999999998877 799999999952 22 2222 3358899999999
Q ss_pred cCCCCCchhhhhhhHHHhhhhhhccccCcc
Q psy11743 365 DPKKQFRPLDKFGNSFLNRFQCSLVNSPVL 394 (551)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (551)
..... -+.+++ ++...++++|++
T Consensus 97 ~ga~~---g~gLg~----~fL~~Ir~aD~i 119 (390)
T PTZ00258 97 KGASE---GEGLGN----AFLSHIRAVDGI 119 (390)
T ss_pred cCCcc---hhHHHH----HHHHHHHHCCEE
Confidence 54322 123444 444556666643
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=78.82 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=31.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|+|.+..+. .. .|.. +.+.. .++||||..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~-~t~~--~~~~~---~~iDt~G~~ 46 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YK-KTQA--VEYND---GAIDTPGEY 46 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------cc-ccee--EEEcC---eeecCchhh
Confidence 6899999999999999999988631 11 1211 22222 678999973
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-07 Score=85.96 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=80.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCC--Cc-------------ccccCCCccc---ceEEEE--ecCCCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDF--PG-------------IHIGPEPTTD---RFIAVM--YDEREGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~--~~-------------~~v~~~~~~t---r~~~~~--~~~~~~~l~dt~gi~~ 365 (551)
-..|+++|..++||||++++|++..- .. .+.....+.| ...... ..+..+.++||||-.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 35799999999999999999997731 00 0111112333 234455 678889999999953
Q ss_pred CCCCCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhh
Q psy11743 366 PKKQFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDR 429 (551)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~ 429 (551)
.|......++..+|. ..|...++ ..++.|+|+||+|.. ++
T Consensus 82 -------------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~----------~~- 137 (188)
T PF00009_consen 82 -------------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI----------EK- 137 (188)
T ss_dssp -------------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS----------HH-
T ss_pred -------------ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch----------hh-
Confidence 244455555666664 23444444 456779999999994 11
Q ss_pred ccChhhHHHHHHHHH----H-h---ccchhhh--ccchH-HHHHHHHHH
Q psy11743 430 SSTSNSVQAYIISAL----R-K---DMPSVFG--KEGKK-KELIKKLDE 467 (551)
Q Consensus 430 ~~~~~~~~~~~~~~l----~-~---~~~~~~~--~~~~~-~~l~~~~~~ 467 (551)
.++...+++.+.+ . . ..|++++ .+|.+ ++|++.+.+
T Consensus 138 --~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 138 --ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp --HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 1111233333222 1 1 2466666 77777 777777755
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.9e-07 Score=88.22 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~ 366 (551)
..+.+|+++|.+||||||++|+|+|... ..++....+|+. ....+++..+.++||||+.+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~--~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERK--AATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 3578999999999999999999999973 556666555542 224456788999999999865
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-06 Score=80.89 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|+++|.+++||||++|+|++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHH
Confidence 5899999999999999999985
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-06 Score=85.24 Aligned_cols=138 Identities=23% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCC-----cccceEEEEecCCCccccCCceeecCCCCCchhhhhhh
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP-----TTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGN 378 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~-----~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~ 378 (551)
..-|+|+++|..|+||||+.|.|.+.. +.+.+.. .|||.+.+. ++.++.+.||.|.++.= |..-++.|
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~---~~~~d~LFATLdpttR~~~l~-~g~~vlLtDTVGFI~~L-P~~LV~AF-- 262 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGAD---VYVADQLFATLDPTTRRIELG-DGRKVLLTDTVGFIRDL-PHPLVEAF-- 262 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccC---eeccccccccccCceeEEEeC-CCceEEEecCccCcccC-ChHHHHHH--
Confidence 456899999999999999999999886 3333332 223333222 37889999999998642 33333333
Q ss_pred HHHhhhhhhccccCccc-----------------ccccc---cccceeEEEecccCCCCccchhhhhhhhhccChhhHHH
Q psy11743 379 SFLNRFQCSLVNSPVLK-----------------GKVLQ---TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQA 438 (551)
Q Consensus 379 ~~~~~~~~~~~~~~~~~-----------------~~~~~---~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~ 438 (551)
..+......+|++. -.++. -.++|.|+|.||.|+. .. .
T Consensus 263 ---ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~----------~~---------~ 320 (411)
T COG2262 263 ---KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL----------ED---------E 320 (411)
T ss_pred ---HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc----------Cc---------h
Confidence 23344444556432 11111 1347889999999971 11 1
Q ss_pred HHHHHHHhccc-hhhh--ccchH-HHHHHHHHHHHH
Q psy11743 439 YIISALRKDMP-SVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 439 ~~~~~l~~~~~-~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
.....+....| .+++ ++|.+ +.|...|.+...
T Consensus 321 ~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 321 EILAELERGSPNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred hhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 12233333333 4455 88889 999999888664
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=80.71 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=37.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCC--cccccCCCcccc---eEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFP--GIHIGPEPTTDR---FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~--~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~ 364 (551)
+|+++|.+|+|||||+|.|.+.... +. ......+|. ...+.+++..+.+.||||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGL-PPSKITPTVGLNIGTIEVGNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCC-cccccCCccccceEEEEECCEEEEEEECCCCh
Confidence 4789999999999999999875321 11 111222231 23355567888899999975
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.5e-07 Score=92.70 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=28.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC-----CCCCCCCCCCccce
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD-----FPGIHIGPEPTTDR 94 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~-----~~~~~~~~~~tt~~ 94 (551)
...++++|.+|||||||||+|++.. ...++..|++|++.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~ 203 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK 203 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee
Confidence 3579999999999999999999753 22244556655554
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.7e-07 Score=81.03 Aligned_cols=56 Identities=18% Similarity=0.071 Sum_probs=38.2
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|.|.+.......+.+..+.+. .....++..+.+.||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~-~~~~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV-ESFEKGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce-EEEEECCEEEEEEECCCCH
Confidence 4789999999999999999987532222333333322 2233456678899999965
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-06 Score=86.75 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
+..-+++++|.|+||||||+|.|.|.+ +.++..+=||. .....+.+-++.++|+||+..-..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~---seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas 125 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTK---SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS 125 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCC---ccccccCceecccccceEeecCceEEEEcCcccccCcc
Confidence 445699999999999999999999998 78888887774 444778999999999999987553
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=78.91 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=35.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCcee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi 363 (551)
-.+++++|.+|+||||+++++.+..+... .....++.. ...+..++ ..+.+.||||-
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 35899999999999999999987764211 111111111 12233444 35678899994
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-06 Score=79.23 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=36.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
.+++++|.+||||||++|.+.+..+.. ....|+. ...+..++. .+.+.||||...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE----KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 579999999999999999999876421 1222221 222334443 345789999653
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=90.74 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=55.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecC-----------------CCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDE-----------------REGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~-----------------~~~~l~dt~gi~~~ 366 (551)
++++++|.|||||||+.|+|.+.. +.++..|+||+.. .+.+.+ .++.++|+||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~---~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG---AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 589999999999999999999988 7899999999522 223332 24789999999864
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCcc
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVL 394 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (551)
... -+.+++ ++...++++|++
T Consensus 80 a~~---g~glg~----~fL~~i~~aD~l 100 (364)
T PRK09601 80 ASK---GEGLGN----QFLANIREVDAI 100 (364)
T ss_pred CCh---HHHHHH----HHHHHHHhCCEE
Confidence 321 233444 444556666654
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-06 Score=78.87 Aligned_cols=138 Identities=15% Similarity=0.124 Sum_probs=71.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEec--CCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYD--EREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~--~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
+++++|.+|+||||++|.+....+.. ....++. ......+ ...+.++||||..... .....++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE----DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------AIRDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc----ccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------HHHHHHhh
Confidence 68999999999999999999876421 2222221 1222333 2357788999954321 11111111
Q ss_pred hhhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhcc
Q psy11743 383 RFQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDM 448 (551)
Q Consensus 383 ~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 448 (551)
.....+.-.|+.. -......+++.++|+||+|++... ... ......+.+.+ ..
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~----------~~~-~~~~~~~~~~~--~~ 137 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR----------QVS-SEEAANLARQW--GV 137 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc----------ccC-HHHHHHHHHHh--CC
Confidence 1111111111110 001113568889999999983210 000 00111222222 24
Q ss_pred chhhh--ccchH-HHHHHHHHHHH
Q psy11743 449 PSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 449 ~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
|.+.+ ++|.+ ++++..+.+.+
T Consensus 138 ~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 138 PYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 55555 78888 88888876533
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.7e-07 Score=81.51 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=36.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEec--CCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
++++++|.+|+||||++|.|.+..+. ....+... ........ ...+.+.||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP---TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 47899999999999999999998752 11112111 11112222 33467899999664
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=78.40 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=40.2
Q ss_pred EEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEE--EEec-CCCccccCCceeecCC
Q psy11743 311 LVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYD-EREGSVPGNALVVDPK 367 (551)
Q Consensus 311 ~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~--~~~~-~~~~~l~dt~gi~~~~ 367 (551)
++|.+|+||||++|.|.+... ..++..+++|. ... .... ...+.++||||.....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV--AIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc--cccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc
Confidence 579999999999999999863 33566666664 222 2223 6788999999988755
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-06 Score=77.80 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=38.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecC--CCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~--~~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||++|+|.+..+. ....+.++.+.. ..+.+++ ..+.+.||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFD-PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-cccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 37899999999999999999988742 223333443322 2233333 356788999953
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-06 Score=85.05 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=55.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c-e-EEEEecCC-CccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R-F-IAVMYDER-EGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r-~-~~~~~~~~-~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
...++++|.||+|||||+|+|.+.+ ..|+.++=|| + + ..+++++. ++.+.|-||++.-.....+ .|..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK---pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG---lG~~-- 267 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK---PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG---LGYK-- 267 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC---CcccccceeeeccccceeeccccceeEeccCccccccccccCc---ccHH--
Confidence 3468999999999999999999998 5888888777 4 2 23566554 4899999999975433222 2333
Q ss_pred hhhhhhccccCc
Q psy11743 382 NRFQCSLVNSPV 393 (551)
Q Consensus 382 ~~~~~~~~~~~~ 393 (551)
+.+.|++++.
T Consensus 268 --FLrHiER~~~ 277 (366)
T KOG1489|consen 268 --FLRHIERCKG 277 (366)
T ss_pred --HHHHHHhhce
Confidence 4455666653
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-06 Score=78.00 Aligned_cols=54 Identities=15% Similarity=0.076 Sum_probs=36.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||++|.+++..+ +.....++. ......++. .+.+.||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 5899999999999999999998763 223333332 111233433 46679999964
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=8e-07 Score=88.69 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=53.9
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCC-----------------CccccCCceeecCCC
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDER-----------------EGSVPGNALVVDPKK 368 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~-----------------~~~l~dt~gi~~~~~ 368 (551)
++++|.|||||||+.|+|.+.. ..++..|+||+. ..+.+.+. ++.++|+||+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~---~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~ 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG---AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC---CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc
Confidence 5799999999999999999998 588999999952 22333332 488999999995432
Q ss_pred CCchhhhhhhHHHhhhhhhccccCcc
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPVL 394 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (551)
. -+.+++.|+ ..++++|++
T Consensus 78 ~---~~glg~~fL----~~i~~~D~l 96 (274)
T cd01900 78 K---GEGLGNKFL----SHIREVDAI 96 (274)
T ss_pred h---hhHHHHHHH----HHHHhCCEE
Confidence 2 234555454 455666643
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-06 Score=78.60 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=34.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi 363 (551)
+++++|.+|+||||++|.|.+..+.. ......+.+- ...+...+. .+.+.||||.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ 59 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence 78999999999999999999886421 1111112111 112334333 3457899995
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.5e-06 Score=77.48 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCC--ccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
.+++++|.+|+||||+++.++...+. ...+.|+. ...+..++.. +.+.||||...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV----EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 61 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC----cccCCcchheEEEEEEECCEEEEEEEEECCCccc
Confidence 47999999999999999999976532 22223332 2233444433 45789999743
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=80.04 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=69.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
+.+.-+|+||+.+ |.+.+..-..+-|..|+|+.+.+ +..++.++.+-..++.+.+ +++-+||+|+++
T Consensus 117 RhYaH~DCPGHAD-----------YIKNMItGaaqMDGaILVVaatD-G~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 117 RHYAHTDCPGHAD-----------YIKNMITGAAQMDGAILVVAATD-GPMPQTREHLLLARQVGVKHIVVFINKVDLVD 184 (449)
T ss_pred cccccCCCCchHH-----------HHHHhhcCccccCceEEEEEcCC-CCCcchHHHHHHHHHcCCceEEEEEecccccC
Confidence 6788899999976 55555555678899999999997 8888888888777877766 666779999997
Q ss_pred HHHHHHHHHHHHHHcccccC--CCCceEEEecccC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFW 248 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~ 248 (551)
+.+..+..+-++..+-...+ -...|++.-||+.
T Consensus 185 d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 185 DPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALC 219 (449)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhh
Confidence 66654444333332211112 2245777777753
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=93.92 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
++|.|+++|.+|+|||||+|+|.+..+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v 29 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV 29 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 578999999999999999999998863
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.8e-06 Score=88.82 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=84.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE-ecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS-LVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~-~~~~ 133 (551)
....+.++.+...|||||..+|+-.+--+.+.-. .+-|| ..+.+++ ...|.. -+...+ .+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rla--gkirf--ld~rede-q~rgit------------mkss~is~~~~ 70 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLA--GKIRF--LDTREDE-QTRGIT------------MKSSAISLLHK 70 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhc--cceee--ccccchh-hhhcee------------eeccccccccC
Confidence 4467999999999999999999976631111111 11111 1111111 001100 000001 1123
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
++ .+++||+||+.+ |...+..+..-+|..++++|+-. +...+...+++.....+..+++|+||+|.
T Consensus 71 ~~--~~nlidspghvd-----------f~sevssas~l~d~alvlvdvve-gv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 71 DY--LINLIDSPGHVD-----------FSSEVSSASRLSDGALVLVDVVE-GVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred ce--EEEEecCCCccc-----------hhhhhhhhhhhcCCcEEEEeecc-ccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 33 389999999987 77788888899999999999997 99999988888766667889999999994
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.6e-06 Score=79.76 Aligned_cols=53 Identities=26% Similarity=0.226 Sum_probs=35.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCC-Cccc---ceEEEEecC--CCccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE-PTTD---RFIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~-~~~t---r~~~~~~~~--~~~~l~dt~gi 363 (551)
+++++|.+|+||||+++.+.+..+. .+.. +.+. ....+..++ ..+.+.||||.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFL---NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 6899999999999999999988742 2122 2221 122233443 34667899994
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-06 Score=85.59 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=23.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
...++++|++|||||||+|+|++...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhh
Confidence 45899999999999999999999754
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=78.13 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=35.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||+++.++...+.... .+... . ...+..++. .+.+.||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY---DPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 47999999999999999999987653211 12111 1 122333443 35679999953
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.9e-06 Score=79.08 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=39.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhC--CCCcc-ccc----------CCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER--DFPGI-HIG----------PEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~--~~~~~-~v~----------~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
-+|+++|.+|+||||++|.|++. .+... .+. ...++|. ...+.+++..+.++||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence 37999999999999999999973 22111 011 1133332 233455677888999999753
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-06 Score=85.68 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=65.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
..+.|||.||+|||||+|+|++.....+..-|.+|.+....+..-++ ..++.+..+-+ ......
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d------~r~d~L~~~~~----------~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSD------PRLDLLAIYIK----------PEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEech------hHHHHHHHHhC----------CcCcCC
Confidence 57899999999999999999998742334445555555544433221 11111111100 000001
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
..+.++|.||+..+.... ..........++++|++++|+|+..
T Consensus 67 a~i~~~DiaGlv~gAs~g----~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKG----EGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcc----cCcchHHHHHHHhCCEEEEEEeCCC
Confidence 347899999998754322 2234455667799999999999863
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.2e-06 Score=77.13 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||++|.|.+..+..... +..+.+. ...+..++ ..+.+.||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV-STVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 479999999999999999999987532111 1112111 11222232 356788999964
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=77.40 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=37.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+++++|.+|+||||++|++.+... ....+..+.+ ...+.+.+..+.+.||||..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~~t~~~~-~~~~~~~~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTIPTIGFN-VETVEYKNVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcCcc-eEEEEECCEEEEEEECCCCh
Confidence 478999999999999999998873 1222222222 22244566778899999954
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.2e-06 Score=76.60 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecC--CCccccCCcee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~--~~~~l~dt~gi 363 (551)
.+|+++|.+|+||||++|.+.+..+ .....+..+ +...+..++ ..+.+.||||.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF---SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 3789999999999999999998874 222222222 122233443 35678899994
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.7e-06 Score=78.94 Aligned_cols=53 Identities=21% Similarity=0.107 Sum_probs=35.1
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCCC--ccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~~--~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|.+.+..+.. ..+.|+ . ...+..++.. +.+.||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE----TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc----cCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 47899999999999999999776522 122222 1 2223344443 6679999953
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.9e-06 Score=76.80 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=35.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
+++++|.+|+||||++|.|.+..+. ....+..+... ...+..++ ..+.+.||||..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFK-EDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 6899999999999999999988642 11122222221 22233333 345688999953
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.1e-06 Score=81.93 Aligned_cols=181 Identities=17% Similarity=0.207 Sum_probs=101.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCC--------ccccCCCCcccccccccccccc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--------EGSVPFSPLDKFGKFGNSFLNR 125 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~--------~~~i~g~~~~~~~~~g~~~~~~ 125 (551)
++-..|.-+|..-.||||++.++.|-.. +.-..+-.+.-.+-.-|... ...-| ..+..||++.-++
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~T--vrFK~ELERNITIKLGYANAKIYkc~~~kCprP----~cy~s~gS~k~d~ 109 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHT--VRFKNELERNITIKLGYANAKIYKCDDPKCPRP----GCYRSFGSSKEDR 109 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceE--EEehhhhhcceeEEeccccceEEecCCCCCCCc----chhhccCCCCCCC
Confidence 3457889999999999999999988431 11111112211111111111 11111 1233466655555
Q ss_pred eeE--EecCC--CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-CC
Q psy11743 126 FQC--SLVNS--PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-GH 200 (551)
Q Consensus 126 ~~~--~~~~~--~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~~ 200 (551)
+.| +.+++ .+.+++.+||+||++- .+..+..-..--|++++++.+...-..++..+.+..+. -.
T Consensus 110 ~~c~~~g~~~~~klvRHVSfVDCPGHDi-----------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~ 178 (466)
T KOG0466|consen 110 PPCDRPGCEGKMKLVRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK 178 (466)
T ss_pred CCcccCCCCCceEEEEEEEeccCCchHH-----------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh
Confidence 444 33332 3458999999999863 34444444455688888888774222233322222222 11
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
-+.++++-||+|++.+.+..+.+++...-+ .-......|++++||.-+.++
T Consensus 179 LkhiiilQNKiDli~e~~A~eq~e~I~kFi-~~t~ae~aPiiPisAQlkyNI 229 (466)
T KOG0466|consen 179 LKHIIILQNKIDLIKESQALEQHEQIQKFI-QGTVAEGAPIIPISAQLKYNI 229 (466)
T ss_pred hceEEEEechhhhhhHHHHHHHHHHHHHHH-hccccCCCceeeehhhhccCh
Confidence 367899999999998766544443322111 111334668999999877776
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-06 Score=79.87 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=35.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEec--CCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~--~~~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||++|.+.+..+. ....|.+.. ......+ +..+.++||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV---ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc---cccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence 37999999999999999999987642 222222211 1122233 2345789999964
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=84.79 Aligned_cols=107 Identities=23% Similarity=0.234 Sum_probs=69.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccc-ccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG-KFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~-~~g~~~~~~~~~~~~~~ 133 (551)
..+++.|||-||||||||+|+|+..... ...-|..|-+.. .....++...|+.+. .||..- .+|
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn------~a~V~v~d~Rfd~l~~~Y~~~~-------~vp- 83 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPN------EARVEVPDSRFDLLCPIYGPKS-------KVP- 83 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccc------cceeecCchHHHHHHHhcCCcc-------eee-
Confidence 4579999999999999999999988753 344444443332 223445555555432 344311 111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-.+++.|.+|+..+..+....+ .....-++.+|.++.|+++..
T Consensus 84 ---a~l~v~DIAGLvkGAs~G~GLG----N~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 84 ---AFLTVYDIAGLVKGASAGEGLG----NKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ---eeEEEEeecccccCcccCcCch----HHHHHhhhhccceeEEEEecC
Confidence 3489999999998765443333 333445688999999999873
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-06 Score=77.04 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=37.5
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceee
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~ 364 (551)
|+++|.+|+||||++|.|.+..+.. ...|.+.. ...+..++..+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE---DTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc---CccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 7899999999999999999987531 22232222 23345566678899999953
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-06 Score=76.10 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=34.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi 363 (551)
+++++|.+|+||||++|.|.+..+.. ...+.++. .......+. .+.+.||||-
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE---KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---CcCCccceeEEEEEEEECCEEEEEEEEECCch
Confidence 68999999999999999999887421 12222221 122333333 4668899994
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=79.74 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=39.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+++++|.+||||||++|.|++..+. ...+..+.+.. ..+..++ ..+.+.||||...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 3568999999999999999999988742 23333333222 2233333 3567899999643
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=76.54 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=35.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEec--CCCccccCCcee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYD--EREGSVPGNALV 363 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~--~~~~~l~dt~gi 363 (551)
.+++++|.+|+||||++|.+.+..+... ..+..+.+.. ..+... ...+.+.||||.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 5899999999999999999998864211 1111222221 222233 235678899994
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.7e-05 Score=76.39 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+++|++|+||||++..|.+.-
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999998753
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=77.56 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=36.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
.+++++|.+|+||||+++.+.+..+... ..+.........+..++.. +.+.||||-..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 3689999999999999999998875311 1111111112223344433 45789999654
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.7e-06 Score=77.19 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.+.+..+.. ...+..+.+. ...+..++. .+.+.||||..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 379999999999999999999887521 1122222222 222334443 34678999953
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.8e-06 Score=76.92 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP 90 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~ 90 (551)
..+++++|.+|+|||||+|+|.+.....+...++.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~ 135 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGY 135 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe
Confidence 46899999999999999999998765433334443
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=77.12 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=34.4
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec----CCCccccCCcee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD----EREGSVPGNALV 363 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~----~~~~~l~dt~gi 363 (551)
+++++|.+|+||||++|.+.+..+.. ...+..+... ...+... ...+.+.||||.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 68999999999999999999876421 1111111111 1122222 234678899994
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.7e-06 Score=79.95 Aligned_cols=91 Identities=25% Similarity=0.304 Sum_probs=60.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|.++|-|++||||++..|+|...+ +.....+|-.++ +| ..+|..
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~-vasyefttl~~v------------pG-----~~~y~g-------------- 105 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSE-VAAYEFTTLTTV------------PG-----VIRYKG-------------- 105 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCc-cccccceeEEEe------------cc-----eEeccc--------------
Confidence 3458999999999999999999997632 333332222222 11 111111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-.+.+.|.||+.++.++.-.++. ++...++.|.++++|+|+-.
T Consensus 106 --aKiqlldlpgiiegakdgkgrg~----qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 106 --AKIQLLDLPGIIEGAKDGKGRGK----QVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred --cceeeecCcchhcccccCCCCcc----EEEEEeecccEEEEEeeccC
Confidence 45899999999998776555543 33345578999999999864
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-06 Score=91.35 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=61.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC------CC-------CcccccCCCcccce---EEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER------DF-------PGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~------~~-------~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
..+.|+++|.+++|||||+++|.+. .. ...+-....|+|.. .....++.++.|+||||..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 4568999999999999999999743 11 11122233566642 22334667899999999752
Q ss_pred CCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------cccee-EEEecccCC
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVAR-VYIGSFWDQ 415 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~-v~~~~~wd~ 415 (551)
|+......+..+|+ ..|...|+ ..++. |+++||||+
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 33333334444553 34544444 34564 567999998
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-06 Score=78.84 Aligned_cols=56 Identities=20% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~ 364 (551)
+..+++++|.+|+||||+++.|....+. ...|++.. ...+...+..+.+.||||..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~----~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc----cccCCcccceEEEEECCEEEEEEECCCCH
Confidence 3578999999999999999999876542 12233222 22334456678889999974
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-06 Score=77.52 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=40.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+..+++++|.+|+||||++|.|.+..+. ...+..+.+. ..+...+..+.++||||..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~--~~~~t~g~~~-~~i~~~~~~~~~~D~~G~~ 69 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS--HITPTQGFNI-KTVQSDGFKLNVWDIGGQR 69 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc--ccCCCCCcce-EEEEECCEEEEEEECCCCH
Confidence 4689999999999999999999988642 2222233221 2344556778889999954
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.3e-06 Score=74.39 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=36.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEe--cCCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMY--DEREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~--~~~~~~l~dt~gi~ 364 (551)
++++++|.+|+||||++|.|.+..+... .....+.+. ...... ....+.+.|+||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 4789999999999999999998874211 111222222 222232 23556788999963
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-06 Score=93.32 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCC----------------c------------ccccCCCcccce---EEEEecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFP----------------G------------IHIGPEPTTDRF---IAVMYDER 353 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~----------------~------------~~v~~~~~~tr~---~~~~~~~~ 353 (551)
..++|+++|.+++|||||+|+|+...-. | .+-...+|+|+. ..+.+++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4568999999999999999999965310 0 011125777762 23455788
Q ss_pred CccccCCceee
Q psy11743 354 EGSVPGNALVV 364 (551)
Q Consensus 354 ~~~l~dt~gi~ 364 (551)
.+.++||||..
T Consensus 85 ~i~liDtpG~~ 95 (425)
T PRK12317 85 YFTIVDCPGHR 95 (425)
T ss_pred EEEEEECCCcc
Confidence 89999999953
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.4e-06 Score=84.91 Aligned_cols=61 Identities=7% Similarity=0.108 Sum_probs=46.7
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-e--EEEEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~--~~~~~~~~~~~l~dt~gi~~~ 366 (551)
....+|+++|.+||||||++|+|+|+.. ..++....++. . .....++..+.++||||+.+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v--~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERI--ATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 3568999999999999999999999973 34555554442 1 223457888999999999875
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.7e-06 Score=79.08 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=35.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEec-CC--CccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYD-ER--EGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~-~~--~~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|.+.+..+.. ...|... . ...+..+ +. .+.+.||||..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~---~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ---HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence 68999999999999999999876421 1122221 1 1223333 33 45678999963
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.1e-06 Score=75.27 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=35.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCC--ccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~--~~l~dt~gi~ 364 (551)
-.+++++|.+|+||||+++.+.+..+. ....++.+. ...+.+.+.. +.+.||||..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 368999999999999999999976532 111222221 1123344433 5667999853
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=83.76 Aligned_cols=70 Identities=23% Similarity=0.214 Sum_probs=44.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||....... ....+... ...+|.+++|+|+.. +- .....++...+.-.+.-+|+||.|..
T Consensus 183 ~DvViIDTaGr~~~d~~-------lm~El~~i~~~~~p~e~lLVlda~~-Gq--~a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDS-------LFEEMLQVAEAIQPDNIIFVMDGSI-GQ--AAEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCEEEEECCCCCcchHH-------HHHHHHHHhhhcCCcEEEEEecccc-Ch--hHHHHHHHHHhccCCcEEEEECccCC
Confidence 46899999997653221 23333332 246789999999873 32 22345555554445678899999986
Q ss_pred CH
Q psy11743 215 DH 216 (551)
Q Consensus 215 ~~ 216 (551)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 53
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.8e-06 Score=76.00 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=37.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCC--ccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~--~~l~dt~gi~ 364 (551)
...+++++|.+|+||||+++.+.+..+.... .+..+..- ...+..++.. +.+.||||..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL-FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc-CCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 3478999999999999999999987653211 11112111 2223344443 4567999954
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-06 Score=77.60 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=37.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCC--CccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~--~~~l~dt~gi~ 364 (551)
..+|+++|.+||||||+++.+.+..+.. ...+..+.. ....+..++. .+.+.||||..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 4689999999999999999999886531 111111211 1122333332 46688999953
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.8e-06 Score=92.18 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=78.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
.|+++|.+|+||||++|+|.+......+-...+|.|. +..+..++..+.++||||.. +|.. ..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe----------~f~~----~~ 67 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE----------KFIS----NA 67 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH----------HHHH----HH
Confidence 5899999999999999999986522223233445553 22344566778899999942 2322 22
Q ss_pred hhhccccC-------cccccc---------cccccce-eEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH--
Q psy11743 385 QCSLVNSP-------VLKGKV---------LQTPEVA-RVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR-- 445 (551)
Q Consensus 385 ~~~~~~~~-------~~~~~~---------~~~~~~~-~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-- 445 (551)
......+| +..|.. .....++ .++|+||+|+.- ++ .++...+++.+.+.
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~----------~~--~~~~~~~ei~~~l~~~ 135 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN----------EE--EIKRTEMFMKQILNSY 135 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC----------HH--HHHHHHHHHHHHHHHh
Confidence 22223333 222221 2224567 788899999831 11 11112222333222
Q ss_pred ---hccchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 446 ---KDMPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 446 ---~~~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
..+|++.+ ++|.+ +++.+.+....+.
T Consensus 136 ~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 136 IFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 13566655 77888 8888777665543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.6e-06 Score=77.97 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=35.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEec-CC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYD-ER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~-~~--~~~l~dt~gi~ 364 (551)
++|+++|.+|+||||++|.+.+..+... ..|.... ...+... +. .+.+.||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~---~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE---YVPTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC---CCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 4799999999999999999998875321 1122111 1122232 22 35678999953
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.7e-06 Score=94.46 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CCcc-ccc------------CCCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FPGI-HIG------------PEPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~~~-~v~------------~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
+...|+++|.+|+|||||+|.|+... .... .+. ...++|. .....+.+.++.++||||..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 34589999999999999999998532 0000 011 2345553 344667899999999999653
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCC
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
|......++..+| +..|...|+ ..++.++++||||.+
T Consensus 88 -------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 88 -------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred -------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 2233444555554 345655555 346779999999984
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.9e-05 Score=76.85 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=41.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHH---HHh-----ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEW---FAE-----RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~---~~~-----~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVl 208 (551)
..+++|||||....... ....+.. .+. .+|.+++|+|+.. + ...........+.-...-+|+
T Consensus 155 ~D~ViIDT~G~~~~d~~-------~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~-~--~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVN-------LMDELKKIKRVIKKVDKDAPDEVLLVLDATT-G--QNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHH-------HHHHHHHHHHHHhcccCCCCceEEEEEECCC-C--HHHHHHHHHHHhhCCCCEEEE
Confidence 46899999998763221 1222222 222 3899999999973 2 222222333222223567899
Q ss_pred cCCCCCCH
Q psy11743 209 NKADMVDH 216 (551)
Q Consensus 209 NK~Dl~~~ 216 (551)
||+|....
T Consensus 225 TKlDe~~~ 232 (272)
T TIGR00064 225 TKLDGTAK 232 (272)
T ss_pred EccCCCCC
Confidence 99998754
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.9e-06 Score=75.61 Aligned_cols=54 Identities=20% Similarity=0.078 Sum_probs=35.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~ 364 (551)
+++++|.+||||||++|++++..+..- ..|.... ...+..++ ..+.+.||||..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKN---YKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 689999999999999999999875321 1122211 12233333 346788999964
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-06 Score=89.04 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=32.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
..+|.+||.|||||||+||+|.|.+.-.|+.+||-|..-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF 352 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF 352 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee
Confidence 578999999999999999999999986666666665433
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.3e-06 Score=76.99 Aligned_cols=53 Identities=25% Similarity=0.199 Sum_probs=34.7
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCC--CccccCCceee
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~--~~~l~dt~gi~ 364 (551)
++++|.+||||||+++.+.+..+.. ...+... ....+..++. .+.+.||||..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE---DYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC---CCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence 5799999999999999999987532 1122221 1222334444 36678999964
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.5e-06 Score=78.51 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=35.4
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c--eEEEEecC---CCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R--FIAVMYDE---REGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r--~~~~~~~~---~~~~l~dt~gi~ 364 (551)
+++++|.+||||||++|.|.+..+.. ...|..+ . ...+..++ ..+.+.||||..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~---~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~ 61 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK---SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS 61 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC---CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH
Confidence 68999999999999999999886521 2222222 1 12233322 345688999953
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-06 Score=77.54 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=36.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+|+||||+++.+.+..+.... .+..+......+..++. .+.+.||||..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccccceEEEEEECCEEEEEEEEeCCCch
Confidence 47999999999999999999988753211 11111111222334433 45688999964
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.2e-06 Score=82.58 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=58.6
Q ss_pred EEEEEeecCCChhHHHHHHHhCCC--Cc-------c------cccCCCcccc---eEEEEecCCCccccCCceeecCCCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDF--PG-------I------HIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~--~~-------~------~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
.|+++|.+|+|||||+|+|+...- .. . +.....++|. .....+++.++.++||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 379999999999999999985420 00 0 1111234442 234667889999999999764
Q ss_pred CchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCC
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
|.....+++..+| ...|...++ ..++.++++||||.+
T Consensus 77 ----------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 77 ----------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred ----------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 1122333333333 333433222 456779999999983
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.2e-06 Score=75.17 Aligned_cols=55 Identities=20% Similarity=0.103 Sum_probs=36.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEec--CCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
++|+++|.+||||||++|+|.+..+.. ...|..+ . ...+..+ ...+.+.||||..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS---KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 379999999999999999999987532 2222222 1 1122333 3456688999963
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.5e-06 Score=75.77 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=35.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCC--CccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+++++|.+|+||||++++++...+. +..+.++ . ...+..++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI----GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc----cccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 4789999999999999999876542 2222222 1 222334444 366899999764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-06 Score=76.99 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=36.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~~~l~dt~gi~ 364 (551)
+++++|.+|+||||++|.|....+.. ..|... ....+...+..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC----cCCccCcCeEEEEECCEEEEEEECCCCH
Confidence 47899999999999999998766421 122221 122344456678899999975
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=74.65 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=35.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc----eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR----FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr----~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+||||||+++.+.+..+. ...+.|.. ...+..++. .+.+.||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM----ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 47999999999999999999988652 11222221 112333333 45678999953
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=76.99 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=35.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-e--EEEEe-cCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMY-DER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~--~~~~~-~~~--~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.+.+..+... ..|..+. . ..+.. ++. .+.+.||||..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~---~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV---SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 5799999999999999999998875321 1122221 1 11222 232 46688999953
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.3e-06 Score=76.77 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=37.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEe---cCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMY---DEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~---~~~~~~l~dt~gi~ 364 (551)
.+.+++++|.+||||||++|++.+..+.. ..|..+ ....+.. .+..+.+.||||..
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN----TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCC----cCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 35789999999999999999999876431 123221 1222332 23457789999953
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 551 | ||||
| 2qpt_A | 550 | Crystal Structure Of An Ehd Atpase Involved In Memb | 1e-116 | ||
| 2qpt_A | 550 | Crystal Structure Of An Ehd Atpase Involved In Memb | 5e-35 | ||
| 2qpt_A | 550 | Crystal Structure Of An Ehd Atpase Involved In Memb | 2e-25 |
| >pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane Remodelling Length = 550 | Back alignment and structure |
|
| >pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane Remodelling Length = 550 | Back alignment and structure |
|
| >pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane Remodelling Length = 550 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 551 | |||
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 1e-128 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 3e-42 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 1e-18 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 3e-09 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 6e-05 |
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 | Back alignment and structure |
|---|
Score = 386 bits (991), Expect = e-128
Identities = 213/394 (54%), Positives = 255/394 (64%), Gaps = 19/394 (4%)
Query: 1 MFSWMSKN--EDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPT 58
MFSW+ K PE TV LK++Y+ KLLPLE+ Y F FHSP EDADFD KP
Sbjct: 8 MFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPM 67
Query: 59 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSV--------PFS 110
V++ GQYSTGKT+FI+YLLE++ PG +GPEPTTD F+AVM+ E EG+V P
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEK 127
Query: 111 PLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE 170
P K FGN+FLNRF C+ + + VL+ ISI+DTPGILSG KQRV RGYDF VL WFAE
Sbjct: 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAE 187
Query: 171 RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230
RVD IILLFDAHKL+ISDEF +I ALRGH+DKIR+VLNKADMV+ QQLMRVYGALMW+L
Sbjct: 188 RVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWAL 247
Query: 231 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290
GKV+ TPEV RVYIGSFW QPL+ NRRLFE EEQDLF+D+Q LPR+AALRKLNDL+KR
Sbjct: 248 GKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKR 307
Query: 291 ARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY 350
ARL + + K + G+ + K L P I
Sbjct: 308 ARLVRVHAYIISYLKKEMPTVFGKENKKKQ------LILKLPVIF---AKIQLEHHISPG 358
Query: 351 DEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384
D + L+ +F L L+
Sbjct: 359 DFPDCQKMQELLMAHDFTKFHSLKPKLLEALDDM 392
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 3e-42
Identities = 71/150 (47%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 250 QPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTV 309
L R + + + L+ L R L L + + EDADFD KP V
Sbjct: 10 SWLKKGGARGQRPEAIRTVTSSLKELYRTK-LLPLEEHYRFGSFHSPALEDADFDGKPMV 68
Query: 310 MLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369
++ GQYSTGKT+FI+YLLE++ PG +GPEPTTD F+AVM+ E EG+VPGNALVVDP+K
Sbjct: 69 LVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKP 128
Query: 370 FRPLDKFGNSFLNRFQCSLVNSPVLKGKVL 399
FR L+ FGN+FLNRF C+ + + VL+ +
Sbjct: 129 FRKLNPFGNTFLNRFMCAQLPNQVLESISI 158
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 | Back alignment and structure |
|---|
Score = 87.9 bits (217), Expect = 1e-18
Identities = 74/158 (46%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
Query: 396 GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFGKE 455
GKV+ TPEV RVYIGSFW QPL+ NRRLFE + I R
Sbjct: 248 GKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEE---QDLFRDIQGLPRHAALRKLNDL 304
Query: 456 GKKKELIKKLDEIYKQIQREYQISPVFGKK---KELIKKLDEIYKQIQREYQISPGDFPK 512
K+ L++ I +++E VFGK+ K+LI KL I+ +IQ E+ ISPGDFP
Sbjct: 305 VKRARLVRVHAYIISYLKKEMP--TVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPD 362
Query: 513 VEKMQELLQHHDFTKFQTLRPRLIEVADKMLAEDIAHL 550
+KMQELL HDFTKF +L+P+L+E D MLA+DIA L
Sbjct: 363 CQKMQELLMAHDFTKFHSLKPKLLEALDDMLAQDIAKL 400
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 4e-11
Identities = 60/427 (14%), Positives = 125/427 (29%), Gaps = 117/427 (27%)
Query: 149 SGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208
+GE Q Y + +L F D + FD D+ D + +L
Sbjct: 11 TGEHQ-----YQYKDILSVF---EDAFVDNFDCK--DVQDMPKS--------------IL 46
Query: 209 NKADMVDH-----QQLMRVYGALMWSLGKVLQTPEVARVYIGSF------W------DQP 251
+K + +DH + L W+L + + E+ + ++ + +
Sbjct: 47 SKEE-IDHIIMSKDAVSGTL-RLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 252 LVHDVNRRLFEDEEQDLFKDLQSL-----PRNAALRKLNDLIKRARLAKAPYEDADFDAK 306
+ R++ ++ L+ D Q R KL + R A
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--PAKN-------- 152
Query: 307 PTVMLVGQYSTGKTTFI-----RYLLERDFPG----IHIGPEPTTDRFIAVMYDEREGSV 357
V++ G +GKT Y ++ +++ + + + ++
Sbjct: 153 --VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 358 PGNALVVDPKKQFRPLDKFGNSFLNRF-------QCSLV-----NSPVLKG-----KVLQ 400
P D + + L R C LV N+ K+L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 401 T---PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP-------- 449
T +V + + + L D S+ + +D+P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNP 327
Query: 450 ---SVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKK-LDEIYKQIQREYQI 505
S+ + ++ + D +K + + K +I+ L+ + R+
Sbjct: 328 RRLSIIAES--IRDGLATWDN-WKHVNCD--------KLTTIIESSLNVLEPAEYRKMFD 376
Query: 506 SPGDFPK 512
FP
Sbjct: 377 RLSVFPP 383
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 78/520 (15%), Positives = 152/520 (29%), Gaps = 165/520 (31%)
Query: 4 WMSKNEDSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVG 63
W++ +SPE TVLE L+K+ ++ + HS +
Sbjct: 186 WLNLKNCNSPE---TVLEMLQKLLYQ----IDPNWTSRSDHSSNIKL------------- 225
Query: 64 QYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFL 123
+ + + R L + + + V+ + + + F
Sbjct: 226 RIHSIQAELRRLLKSKPYE-----------NCLLVLLNVQNAKA----WNAFN------- 263
Query: 124 NRFQC-SLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182
C L+ + + + D LS + L E L
Sbjct: 264 --LSCKILLTT---RFKQVTD---FLSAATTTHISLDHHSMTLT-PDEVKS----LL-LK 309
Query: 183 KLDIS-DEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVAR 241
LD + R E L + ++ I+ A+ + G W K + ++
Sbjct: 310 YLDCRPQDLPR--EVLTTNPRRLSII---AESIRD-------GLATWDNWKHVNCDKLTT 357
Query: 242 VYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNA-----ALRKL------------ 284
+ I S + L E + +F L P +A L +
Sbjct: 358 I-IESSLNV---------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 285 -NDLIKRARLAKAPYE------DADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIG 337
N L K + + K P E + K + +Y+ ++ Y + + F +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 338 PEPTTDRFIA--VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN-RF-------QCS 387
P P D++ + + + + + F FL+ RF +
Sbjct: 466 P-PYLDQYFYSHIGHH------------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 388 LVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFED-------------RSSTSN 434
N+ G +L T + + Y D RL S ++
Sbjct: 513 AWNAS---GSILNTLQQLKFYKPYICDN---DPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 435 SVQAYIISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQR 474
++ AL + ++F +E +KQ+QR
Sbjct: 567 LLR----IALMAEDEAIF-------------EEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 3e-08
Identities = 87/564 (15%), Positives = 166/564 (29%), Gaps = 147/564 (26%)
Query: 35 EQAYHFHDFHSPPYEDA---DFDAKPTV-MLVGQYSTGKTTFIRYLLERDFPGIHIGPEP 90
E Y + D +EDA +FD K M S + I ++ +D
Sbjct: 13 EHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKD-------AVS 62
Query: 91 TTDRFIAVMYDEREGSVP-F--SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGI 147
T R + ++E V F L KF ++ + + P + ++
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIK-TEQRQPSMMTRMYIEQRDR 118
Query: 148 LSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIV 207
L + Q + V R+ KL R+++ LR + ++
Sbjct: 119 LYNDNQVFAKYN------------VSRLQPY---LKL------RQALLELRPAKN---VL 154
Query: 208 LN------KADMV-----DHQQLMRVYGALMW-SLGKVLQTPE-----VARVY--IGSFW 248
++ K + ++ ++ + W +L +PE + ++ I W
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNW 213
Query: 249 DQPLVHDVNRRLFEDEEQDLFKDLQSLPRNA-ALRKLNDLIKRARLAKAPYEDADFDAKP 307
H N +L Q + L L L + ++ A+ A F+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNA------FNLSC 266
Query: 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGP---EPTTDRFIAVMYDEREGSVPGNALVV 364
++L ++ T F+ H + D R +P L
Sbjct: 267 KILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 365 DPKKQFRPLDKFGNS---FLNRFQ------CSLVNSPVLKG--KVLQTPEVARVY----- 408
+P R L S L + C + + +++ VL+ E +++
Sbjct: 326 NP----RRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSV 380
Query: 409 -----------IGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVFGKEGK 457
+ W + DV + + S + K KE
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQ-----PKEST 425
Query: 458 KK------ELIKKLDEIY---KQIQREYQISPVFGKKKELIKKLDE-IYKQIQREYQISP 507
EL KL+ Y + I Y I F + LD+ Y I +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HH--- 480
Query: 508 GDFPKVEKMQELLQHHDFTKFQTL 531
++ + T F+ +
Sbjct: 481 --------LKNIEHPERMTLFRMV 496
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 3e-09
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 38/193 (19%)
Query: 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSP- 111
++++G GK+TF+ L+ + P P T + Y +
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLP---SDVNPCTAVLTVLRYGPEKKVTIHFND 123
Query: 112 -------------------------LDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPG 146
L++ K ++ + + KGI IVD+PG
Sbjct: 124 GKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPG 183
Query: 147 ILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRI 206
+ E + + + I+ + A + E R ++G +
Sbjct: 184 LNDTEAR--------NELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFF 235
Query: 207 VLNKADMVDHQQL 219
++N D V +
Sbjct: 236 LVNAWDQVRESLI 248
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 55/241 (22%)
Query: 39 HFHDFHSPPYEDADFDAKP----------TVMLVGQYSTGKTTFIRYLLERDFPGIHIGP 88
H H HS E+ F P ++LVG+ GK+ +L R
Sbjct: 2 HHHHHHSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA 61
Query: 89 EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGIL 148
+ T + +E + +VDTPGI
Sbjct: 62 KSITKKCEKRSSSWKETE--------------------------------LVVVDTPGIF 89
Query: 149 SGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRGHD--DKIR 205
E + + + + ++L+ + + I + G +
Sbjct: 90 DTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMI 149
Query: 206 IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEE 265
++ + D + L + + PE + + F D+ + E E
Sbjct: 150 LIFTRKDDLGDTNLHD----------YLREAPEDIQDLMDIFGDRYCALNNKATGAEQEA 199
Query: 266 Q 266
Q
Sbjct: 200 Q 200
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 551 | |||
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 100.0 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 100.0 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 100.0 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 100.0 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.9 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.89 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.86 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.79 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.78 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.78 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.77 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.76 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.75 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.72 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.7 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.69 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.69 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.69 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.68 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.68 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.68 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.68 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.68 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.67 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.67 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.67 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.67 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.67 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.67 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.66 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.66 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.66 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.66 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.66 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.66 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.66 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.66 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.66 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.65 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.65 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.65 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.65 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.65 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.65 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.65 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.65 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.65 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.65 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.64 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.64 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.64 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.64 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.64 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.64 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.64 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.64 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.64 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.64 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.64 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.64 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.64 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.64 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.64 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.63 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.63 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.63 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.63 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.63 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.63 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.63 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.63 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.63 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.63 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.63 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.63 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.63 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.63 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.62 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.62 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.62 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.62 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.62 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.62 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.62 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.62 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.61 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.61 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.61 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.61 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.61 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.61 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.61 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.61 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.61 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.61 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.6 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.6 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.6 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.6 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.6 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.6 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.6 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.6 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.6 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.6 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.59 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.59 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.59 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.59 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.58 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.58 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.58 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.58 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.58 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.58 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.58 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.58 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.57 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.57 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.57 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.57 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.57 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.57 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.57 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.57 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.57 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.57 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.56 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.56 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.56 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.56 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.56 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.56 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.56 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.56 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.56 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.56 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.54 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.54 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.54 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.54 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.53 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.53 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.53 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.52 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.52 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.52 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.52 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.51 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.51 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.26 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.51 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.5 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.5 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.5 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.49 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.49 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.49 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.48 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.48 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.48 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.48 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.47 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.47 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.47 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.47 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.46 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.46 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.46 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.46 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.46 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.46 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.44 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.44 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.44 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.43 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.42 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.41 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.41 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.41 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.38 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.38 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.37 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.34 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.33 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.33 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.32 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.32 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.32 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.3 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.3 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.28 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.27 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.27 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.26 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.26 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.25 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.24 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.23 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.23 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.23 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.23 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.18 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.16 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.13 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.12 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.09 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.09 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.08 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.08 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.08 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.08 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.08 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.08 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.06 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.06 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.05 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.04 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.04 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.02 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.01 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.01 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 98.98 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.97 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 98.97 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.96 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 98.95 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 98.94 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 98.93 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 98.85 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 98.84 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 98.82 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.81 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 98.8 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.8 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 98.79 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.77 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 98.77 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 98.75 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 98.75 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 98.74 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 98.74 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 98.74 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 98.74 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 98.74 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 98.74 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.71 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 98.7 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 98.7 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 98.7 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 98.69 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 98.69 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 98.68 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.67 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 98.67 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 98.67 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 98.65 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 98.65 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 98.64 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 98.64 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 98.63 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 98.63 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.63 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 98.61 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 98.61 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 98.61 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 98.61 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 98.6 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 98.6 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 98.59 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 98.59 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 98.59 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 98.58 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 98.58 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.58 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 98.58 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.58 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 98.57 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 98.57 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 98.57 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 98.57 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.57 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 98.57 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 98.56 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 98.56 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 98.56 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 98.55 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 98.55 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 98.55 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 98.55 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 98.54 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 98.54 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 98.54 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 98.54 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 98.54 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 98.54 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 98.54 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 98.54 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 98.54 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 98.53 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 98.53 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 98.53 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 98.53 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 98.52 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 98.52 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 98.52 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 98.52 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 98.52 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 98.51 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.5 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 98.5 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 98.5 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 98.5 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 98.5 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 98.49 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 98.48 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 98.48 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 98.48 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 98.47 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.47 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 98.47 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 98.47 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 98.47 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 98.46 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.46 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 98.45 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 98.45 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 98.45 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 98.44 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 98.44 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 98.43 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 98.42 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.42 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 98.42 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 98.42 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 98.42 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.41 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 98.41 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 98.4 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 98.4 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 98.4 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 98.37 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 98.37 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 98.36 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 98.36 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 98.36 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 98.35 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 98.35 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 98.34 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.33 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 98.33 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 98.31 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.31 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 98.3 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 98.3 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 98.3 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 98.3 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 98.28 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 98.28 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 98.28 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.28 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 98.28 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 98.28 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 98.26 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 98.24 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 98.22 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.22 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 98.22 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 97.53 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 98.19 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 98.17 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 98.15 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 98.14 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.14 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 98.13 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 98.11 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 98.09 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 98.05 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.04 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.01 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.0 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 98.0 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.99 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.97 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 97.97 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 97.94 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 97.91 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.91 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 97.89 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 97.89 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.88 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 97.88 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.88 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.87 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 97.85 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 97.84 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 97.84 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 97.83 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 97.81 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 97.8 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 97.79 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 97.76 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.75 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 97.75 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.75 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.74 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 97.73 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 97.7 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 97.69 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 97.69 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 97.64 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.59 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 97.56 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.55 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 97.53 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 97.52 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.5 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.47 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 97.41 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 97.38 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 97.34 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.34 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.29 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.29 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 97.29 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.28 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 97.28 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 97.22 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.17 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 97.14 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.13 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 97.12 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.1 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 97.05 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.04 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.87 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 96.86 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.84 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.82 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 96.77 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 96.7 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.66 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.48 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 96.44 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.42 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.39 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.09 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 96.0 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 95.93 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 95.89 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.86 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 95.86 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 95.75 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 95.62 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 95.58 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 95.45 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.4 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.38 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 95.37 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 95.37 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 95.31 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 95.29 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 95.27 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 95.23 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 95.13 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.12 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 95.12 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.11 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.1 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.03 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 94.99 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 94.99 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 94.97 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 94.97 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 94.96 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 94.95 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 94.94 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 94.94 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 94.94 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 94.94 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 94.93 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 94.93 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 94.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 94.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 94.89 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 94.89 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 94.87 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 94.85 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 94.84 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 94.79 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 94.75 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.72 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 94.71 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 94.7 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 94.68 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 94.68 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 94.64 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 94.59 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 94.59 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 94.58 |
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=340.38 Aligned_cols=251 Identities=68% Similarity=1.155 Sum_probs=184.2
Q ss_pred CccccCCCC--CCChhHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccCCCCEEEEEeccCCChHHHHHHHHh
Q psy11743 1 MFSWMSKNE--DSSPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
|+||+.+.. .+..+.++++++.|+++|++++.++++.+.|..|+++.+.+......++|+|+|.+|+|||||+|+|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~y~~~i~~le~~~~~~~~~~~~l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg 87 (550)
T 2qpt_A 8 MFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLE 87 (550)
T ss_dssp ------------------CCHHHHHHHHHHHHTHHHHHHTTGGGTTCCCCCSTTTSSCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhcccccccCCcEEEEECCCCCCHHHHHHHHhC
Confidence 789999652 355699999999999999999999999999999999988888888899999999999999999999999
Q ss_pred cCCCCCCCCCCCccceEEEEEeCCCccccCC--------CCcccccccccccccceeEEecCCCCccCeEEEeCCCCCCC
Q psy11743 79 RDFPGIHIGPEPTTDRFIAVMYDEREGSVPF--------SPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSG 150 (551)
Q Consensus 79 ~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g--------~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~ 150 (551)
.++.+..+++.|+|+++..+.+++.....+| .++..+..+|..+.++|.|++++++++.+++||||||+.++
T Consensus 88 ~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~ 167 (550)
T 2qpt_A 88 QEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSG 167 (550)
T ss_dssp SCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-
T ss_pred CccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCc
Confidence 9976556788888888888888765333333 35566778899999999999999998889999999999875
Q ss_pred cccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHc
Q psy11743 151 EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSL 230 (551)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l 230 (551)
..+.+.+.+.+...+..++.++|++|+|+|+.+.+....+..+++.+...+.|+++|+||+|+++.+++.+.+....|++
T Consensus 168 ~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~~s~ 247 (550)
T 2qpt_A 168 AKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWAL 247 (550)
T ss_dssp ------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhhcch
Confidence 55555666667788889999999999999998766788888888888888899999999999999888877777777776
Q ss_pred ccccCCCCceEEEecccCCCC
Q psy11743 231 GKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 231 ~~l~~~~~~~~v~iSa~~g~~ 251 (551)
..+...+....++.+..+..+
T Consensus 248 ~~i~~vs~l~~~~~~~~~~~~ 268 (550)
T 2qpt_A 248 GKVVGTPEVLRVYIGSFWSQP 268 (550)
T ss_dssp HHHHCCSSCCCEEESCCSSSC
T ss_pred hheeechHhhhhccccCCCCc
Confidence 665454444445566655443
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=326.01 Aligned_cols=328 Identities=19% Similarity=0.217 Sum_probs=210.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|++|||||||+|+|+|...+.+...|+.|+++..... .+.+
T Consensus 2 ~~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~----------------------~~~~--------- 50 (436)
T 2hjg_A 2 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA----------------------EWLN--------- 50 (436)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC----------------------TTCS---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE----------------------EECC---------
Confidence 358999999999999999999999988777888888888764321 1112
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+...... + ...+..++..+++.||++|+|+|++. +.+..+..+.+.+++.++|+++|+||+|+.
T Consensus 51 --~~~~l~DT~G~~~~~~~-~--~~~~~~~~~~~~~~ad~il~vvD~~~-~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 51 --YDFNLIDTGGIDIGDEP-F--LAQIRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp --SCCEEEC---------C-H--HHHHHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred --ceEEEEECCCCCCcchh-H--HHHHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 46999999999743211 1 12356677888999999999999996 788888888888888899999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhh
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLA 294 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~ 294 (551)
+.... ...+++++. .+.+.+||.+|.|+ ++|++.+...-..
T Consensus 125 ~~~~~----~~~~~~lg~------~~~~~iSA~~g~gv-------------~~L~~~i~~~l~~---------------- 165 (436)
T 2hjg_A 125 EMRAN----IYDFYSLGF------GEPYPISGTHGLGL-------------GDLLDAVAEHFKN---------------- 165 (436)
T ss_dssp ----C----CCSSGGGSS------CCCEECBTTTTBTH-------------HHHHHHHHHTGGG----------------
T ss_pred cchhh----HHHHHHcCC------CCeEEEeCcCCCCh-------------HHHHHHHHHhcCc----------------
Confidence 54210 112233332 24578999998887 5566555221000
Q ss_pred cCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCc
Q psy11743 295 KAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFR 371 (551)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~ 371 (551)
.+ .......+++++++|.|||||||++|+|++.. ...++..++||+. ..+.+++..+.++||||+.+......
T Consensus 166 -~~-~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~--~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 241 (436)
T 2hjg_A 166 -IP-ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE 241 (436)
T ss_dssp -CC-SSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--TEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCC
T ss_pred -cc-cccccccCcEEEEEcCCCCCHHHHHHHHhCCC--ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccc
Confidence 00 01122356899999999999999999999998 4678999999973 34666788899999999998877777
Q ss_pred hhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhh
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNS 435 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~ 435 (551)
.+++|+. .++..++..+| +..+.+.++ ..++.|+|+||||+.- +....+++
T Consensus 242 ~~e~~~~---~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~----------~~~~~~~~ 308 (436)
T 2hjg_A 242 TTEKYSV---LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD----------KDESTMKE 308 (436)
T ss_dssp CCSHHHH---HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSC----------CCTTHHHH
T ss_pred hHHHHHH---HHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCC----------cchHHHHH
Confidence 7888875 33334444444 334555444 4567799999999832 11111223
Q ss_pred HHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhh
Q psy11743 436 VQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQRE 475 (551)
Q Consensus 436 ~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~ 475 (551)
..+.+.+.+. .++|++++ ++|.+ +++++.+.+.+.++.++
T Consensus 309 ~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~ 353 (436)
T 2hjg_A 309 FEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 353 (436)
T ss_dssp HHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcC
Confidence 4445555553 46788777 89999 99999999988776654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=317.23 Aligned_cols=332 Identities=19% Similarity=0.254 Sum_probs=206.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
|+|+|+|++|||||||+|+|++...+.+...|+.|+++..... .+.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~----------------------~~~~----------- 48 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV----------------------EWYG----------- 48 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEE----------------------EETT-----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEE----------------------EECC-----------
Confidence 7899999999999999999999987777888888888764321 1111
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.......+. ..+..++..+++.||++|+|+|++. +.+..+..+..++++.++|+++|+||+|+...
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~--~~~~~~~~~~~~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIIS--QKMKEVTLNMIREADLVLFVVDGKR-GITKEDESLADFLRKSTVDTILVANKAENLRE 125 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCC--HHHHHHHHHHHTTCSEEEEEEETTT-CCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH
T ss_pred eEEEEEECCCccccccchHH--HHHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 45899999999853222221 2356778888999999999999996 78888878888888778999999999998532
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKA 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~ 296 (551)
. .......++.++. .+.+.+||.+|.|+ ++|++.+... +... ..
T Consensus 126 ~--~~~~~~~~~~lg~------~~~~~iSA~~g~gv-------------~~L~~~i~~~------------l~~~---~~ 169 (439)
T 1mky_A 126 F--EREVKPELYSLGF------GEPIPVSAEHNINL-------------DTMLETIIKK------------LEEK---GL 169 (439)
T ss_dssp H--HHHTHHHHGGGSS------CSCEECBTTTTBSH-------------HHHHHHHHHH------------HHHT---TC
T ss_pred c--HHHHHHHHHhcCC------CCEEEEeccCCCCH-------------HHHHHHHHHh------------cccc---cc
Confidence 1 1111133444432 13578999999887 5565555211 1100 00
Q ss_pred C-CCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCC-c
Q psy11743 297 P-YEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQF-R 371 (551)
Q Consensus 297 ~-~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~-~ 371 (551)
. ........+++++++|+|||||||++|.|++.. ...+++.|+||+ ...+.+++..+.++||||+....... .
T Consensus 170 ~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~--~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~ 247 (439)
T 1mky_A 170 DLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPR 247 (439)
T ss_dssp CSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST--TEEECCCC------CCEEEEETTEEEEESSCSCC---------
T ss_pred cchhccccccCceEEEECCCCCCHHHHHHHHhCCc--ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchh
Confidence 0 000012356899999999999999999999997 367999999996 34466788889999999987544322 3
Q ss_pred hhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhh
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNS 435 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~ 435 (551)
.++.|+. .++...+..+| +..+.+.++ ...+.|+|+||||+. ++....++.
T Consensus 248 ~~e~~~~---~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~----------~~~~~~~~~ 314 (439)
T 1mky_A 248 TVEKYSN---YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV----------VHREKRYDE 314 (439)
T ss_dssp --CCSCC---HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS----------TTGGGCHHH
T ss_pred hHHHHHH---HHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC----------CchhhHHHH
Confidence 4455543 22222333333 233333332 456779999999983 122222333
Q ss_pred HHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhh
Q psy11743 436 VQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQRE 475 (551)
Q Consensus 436 ~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~ 475 (551)
+.+.+...+. .++|++++ ++|.+ +++++.+.+++.++.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 359 (439)
T 1mky_A 315 FTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTK 359 (439)
T ss_dssp HHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 4444545443 46787777 89999 99999999998877654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=320.31 Aligned_cols=331 Identities=19% Similarity=0.210 Sum_probs=215.3
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..+..|+|+|+|++|||||||+|+|+|...+.+...|+.|+++..... .+.+
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~----------------------~~~~------ 70 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA----------------------EWLN------ 70 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC----------------------TTCS------
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE----------------------EECC------
Confidence 346679999999999999999999999988777778888877764321 1111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+..... .+ ...+..++..+++.+|++|+|+|++. +++..+.++.+.+++.++|+++|+||+
T Consensus 71 -----~~~~liDT~G~~~~~~-~~--~~~~~~~~~~~~~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~~~pvilV~NK~ 141 (456)
T 4dcu_A 71 -----YDFNLIDTGGIDIGDE-PF--LAQIRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLAVNKL 141 (456)
T ss_dssp -----SCCEEECCCC-------CC--HHHHHHHHHHHHHHCSEEEEEEESSS-CSCHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred -----ceEEEEECCCCCCcch-HH--HHHHHHHHHhhHhhCCEEEEEEeCCC-CCChHHHHHHHHHHHcCCCEEEEEECc
Confidence 5699999999874221 11 22366777888999999999999986 889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
|+..... ....+|.++. ...+.+||.+|.|+ .+|++.+......
T Consensus 142 D~~~~~~----~~~e~~~lg~------~~~~~iSA~~g~gv-------------~~L~~~i~~~l~~------------- 185 (456)
T 4dcu_A 142 DNTEMRA----NIYDFYSLGF------GEPYPISGTHGLGL-------------GDLLDAVAEHFKN------------- 185 (456)
T ss_dssp -------------CCSGGGSS------SSEEECCTTTCTTH-------------HHHHHHHHTTGGG-------------
T ss_pred cchhhhh----hHHHHHHcCC------CceEEeecccccch-------------HHHHHHHHhhccc-------------
Confidence 9875321 1122344433 13468999988887 5565555321100
Q ss_pred hhhcCCCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCC
Q psy11743 292 RLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
. .........++++++|.+|+||||++|.|++.. ...++..++||+ ...+.+++..+.++||||+.+..+
T Consensus 186 ----~-~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~ 258 (456)
T 4dcu_A 186 ----I-PETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGK 258 (456)
T ss_dssp ----S-CSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTT
T ss_pred ----c-cccccccccceeEEecCCCCCHHHHHHHHhCCC--ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcc
Confidence 0 001123457899999999999999999999987 478899999996 355677888999999999998887
Q ss_pred CCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccC
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSST 432 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~ 432 (551)
.....++|+. .++...+..+|+ ..+.+.++ ..++.|+|+||||+.- +....
T Consensus 259 ~~~~~e~~~~---~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~----------~~~~~ 325 (456)
T 4dcu_A 259 VYETTEKYSV---LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD----------KDEST 325 (456)
T ss_dssp BCCCCSHHHH---HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSC----------CCSSH
T ss_pred cchHHHHHHH---HHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCC----------CchHH
Confidence 7777888876 344444445543 33444443 4567799999999832 22222
Q ss_pred hhhHHHHHHHHHH--hccchhhh--ccchH-HHHHHHHHHHHHHHhhh
Q psy11743 433 SNSVQAYIISALR--KDMPSVFG--KEGKK-KELIKKLDEIYKQIQRE 475 (551)
Q Consensus 433 ~~~~~~~~~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~ 475 (551)
++...+.+.+.+. .++|++++ ++|.+ +++++.+.+++.++.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 326 MKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp HHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 3334455555543 46788877 89999 99999999988777654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=224.20 Aligned_cols=239 Identities=17% Similarity=0.194 Sum_probs=163.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|++|||||||+|+|++.+...+...+++|++....... ++ +
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~-----------------~~-----~--------- 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT-----------------YN-----Q--------- 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEE-----------------ET-----T---------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEE-----------------EC-----C---------
Confidence 4579999999999999999999998864344445555444321110 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHH--HHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVL--EWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~--~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.+|||||+.+..+ .....+....+ ..+++.+|++++|+|+.+ +.+.++..++..+...++|+++|+||+|
T Consensus 223 --~~~~l~DT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~~~~iiiv~NK~D 297 (436)
T 2hjg_A 223 --QEFVIVDTAGMRKKGK--VYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVVIVVNKWD 297 (436)
T ss_dssp --EEEEETTHHHHTCBTT--BCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred --eEEEEEECCCcCcCcc--ccchHHHHHHHHHHHHHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 3489999999865322 11222223332 347889999999999997 7888888888888888999999999999
Q ss_pred CCCHHH--HHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHH
Q psy11743 213 MVDHQQ--LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290 (551)
Q Consensus 213 l~~~~~--~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~ 290 (551)
+.+..+ ..+........+. ...+.+++++||++|.|+ ..++. .+.+.+.....+.++..+|+++..
T Consensus 298 l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~SA~tg~~v-----~~l~~----~i~~~~~~~~~~~~t~~ln~~l~~ 365 (436)
T 2hjg_A 298 AVDKDESTMKEFEENIRDHFQ---FLDYAPILFMSALTKKRI-----HTLMP----AIIKASENHSLRVQTNVLNDVIMD 365 (436)
T ss_dssp GSCCCTTHHHHHHHHHHHHCG---GGTTSCEEECCTTTCTTG-----GGHHH----HHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhcc---cCCCCCEEEEecccCCCH-----HHHHH----HHHHHHHHhhcCCCHHHHHHHHHH
Confidence 986422 1111111112222 234568899999999998 44442 244444555566788889999999
Q ss_pred HhhhcCCCC-----------ccccCCCcEEEEEeecC-CChhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 291 ARLAKAPYE-----------DADFDAKPTVMLVGQYS-TGKTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 291 ~~~~~~~~~-----------~~~~~~~~~~~~~g~~~-~gKss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
+...++||. .|....||+|+++++.. .-+.+|.+||.++ +|.|+|+....+
T Consensus 366 ~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~ 433 (436)
T 2hjg_A 366 AVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFAR 433 (436)
T ss_dssp HHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEE
T ss_pred HHHhCCCCccCCcceeEEeEecCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCceeEEEEEe
Confidence 888887764 26778999999999754 4499999999987 677888776554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=220.04 Aligned_cols=241 Identities=17% Similarity=0.205 Sum_probs=164.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|+|||||+|+|++.+...+...+++|.+....... + .+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~-----------------~-----~~-------- 242 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT-----------------Y-----NQ-------- 242 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEE-----------------E-----TT--------
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEE-----------------E-----CC--------
Confidence 34689999999999999999999998754444445444443211100 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHH--HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGV--LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~--~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+.+..+ .....+.... ...++..+|++|+|+|+.. +++.++..++..+...++|+++|+||+
T Consensus 243 ---~~~~l~DT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~~~~~ilv~NK~ 316 (456)
T 4dcu_A 243 ---QEFVIVDTAGMRKKGK--VYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVVIVVNKW 316 (456)
T ss_dssp ---EEEEETTGGGTTTBTT--BCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ---ceEEEEECCCCCcCcc--cchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEEEEECh
Confidence 3589999999876322 2222222222 2347799999999999997 888999999999888899999999999
Q ss_pred CCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHH
Q psy11743 212 DMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKR 290 (551)
Q Consensus 212 Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~ 290 (551)
|+.+..+ ..+......... +....+.+++++||++|.|+ ..++. .+.+.+.....+..+..+|+++..
T Consensus 317 Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~SA~~g~gv-----~~l~~----~i~~~~~~~~~~~~t~~ln~~l~~ 385 (456)
T 4dcu_A 317 DAVDKDESTMKEFEENIRDH--FQFLDYAPILFMSALTKKRI-----HTLMP----AIIKASENHSLRVQTNVLNDVIMD 385 (456)
T ss_dssp GGSCCCSSHHHHHHHHHHHH--CGGGTTSCEEECCTTTCTTG-----GGHHH----HHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHh--cccCCCCCEEEEcCCCCcCH-----HHHHH----HHHHHHHHhcccCCHHHHHHHHHH
Confidence 9985321 111112222111 11234568999999999998 44442 244445555667788889999998
Q ss_pred HhhhcCCCC-----------ccccCCCcEEEEEeec-CCChhHHHHHHHhC-----CCCcccccCCCc
Q psy11743 291 ARLAKAPYE-----------DADFDAKPTVMLVGQY-STGKTTFIRYLLER-----DFPGIHIGPEPT 341 (551)
Q Consensus 291 ~~~~~~~~~-----------~~~~~~~~~~~~~g~~-~~gKss~~n~l~~~-----~~~~~~v~~~~~ 341 (551)
+...++|+. .|...+||+|+++|+. .-=+.+|.+||.++ +|.|+|+...++
T Consensus 386 ~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~ 453 (456)
T 4dcu_A 386 AVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFAR 453 (456)
T ss_dssp HHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEE
T ss_pred HHHhCCCCCCCCceeeEEEEecCCCCCCEEEEEecCcccCCHHHHHHHHHHHHHhCCCCceeEEEEEe
Confidence 888777764 3678999999999974 44499999999887 677888776554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=206.75 Aligned_cols=240 Identities=16% Similarity=0.142 Sum_probs=154.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|++|||||||+|+|+|.....+...+++|++...... .+.+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i----------------------~~~g--------- 227 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV----------------------FIDG--------- 227 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEE----------------------EETT---------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEE----------------------EECC---------
Confidence 457999999999999999999999876545556665655432111 0111
Q ss_pred CccCeEEEeCCCCCCCcccccccccch-HHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDF-TGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~-~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.............+ ......++..+|++++|+|+.. +.+.++..+...+...++|+++|+||+|+
T Consensus 228 --~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 228 --RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ-GITRQDQRMAGLMERRGRASVVVFNKWDL 304 (439)
T ss_dssp --EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred --EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECccC
Confidence 3488999999854221100000111 1123457789999999999986 77777777777787889999999999999
Q ss_pred CCHHH--HHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHH
Q psy11743 214 VDHQQ--LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRA 291 (551)
Q Consensus 214 ~~~~~--~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~ 291 (551)
.+... ..+........+.. ..+.+++++||++|.|+ .++++. +.+.+..+..+.++..+|+++..+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~g~gv-----~~l~~~----i~~~~~~~~~~i~t~~ln~~l~~~ 372 (439)
T 1mky_A 305 VVHREKRYDEFTKLFREKLYF---IDYSPLIFTSADKGWNI-----DRMIDA----MNLAYASYTTKVPSSAINSALQKV 372 (439)
T ss_dssp STTGGGCHHHHHHHHHHHCGG---GTTSCEEECBTTTTBSH-----HHHHHH----HHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHhcc---CCCCcEEEEECCCCCCH-----HHHHHH----HHHHHHhhcccCCHHHHHHHHHHH
Confidence 86432 11111111122222 33557899999999988 344322 334444555667889999999999
Q ss_pred hhhcCCCC-------ccccCCCcEEEEEeecCCC-hhHHHHHHHhC------CCCcccccCCC
Q psy11743 292 RLAKAPYE-------DADFDAKPTVMLVGQYSTG-KTTFIRYLLER------DFPGIHIGPEP 340 (551)
Q Consensus 292 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~g-Kss~~n~l~~~------~~~~~~v~~~~ 340 (551)
...++||. .|....||+|+++++-.-. +.+|.+||.++ +|.|+|+....
T Consensus 373 ~~~~~~~~~~ki~y~~q~~~~p~~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~ 435 (439)
T 1mky_A 373 LAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKF 435 (439)
T ss_dssp HTTCCCSTTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEE
T ss_pred HHcCCCCCCcEEEEEEecCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 88877763 2667899999999986544 77778888765 34456655443
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=178.02 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=117.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+++|.+|||||||+|+|+|.++..+...+++|+++...+..... +
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~---------------------~--------- 58 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN---------------------E--------- 58 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT---------------------T---------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC---------------------C---------
Confidence 3468999999999999999999999988777888888777655443210 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHH-HHHHhCCCCcEEEEEcCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRS-IEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~-l~~l~~~~~~vilVlNK~Dl 213 (551)
.++.+|||||+.+.... -..+..+...+..++..+|++++|+|+.+ +.+..+..+ +..+...+.|+++|+||+|+
T Consensus 59 --~~i~lvDTPG~~~~~~~-~~l~~~~~~~~~~~l~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl 134 (308)
T 3iev_A 59 --AQIIFLDTPGIYEPKKS-DVLGHSMVEIAKQSLEEADVILFMIDATE-GWRPRDEEIYQNFIKPLNKPVIVVINKIDK 134 (308)
T ss_dssp --EEEEEEECCCCCCCCTT-CHHHHHHHHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHTGGGCCCEEEEEECGGG
T ss_pred --CeEEEEECcCCCccccc-hhHHHHHHHHHHHHhhcCCEEEEEEeCCC-CCCchhHHHHHHHHHhcCCCEEEEEECccC
Confidence 45899999999864311 11123356677788999999999999996 677777666 78888788999999999999
Q ss_pred C-CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 V-DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~-~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. +..............++ +..+++.+||++|.|+
T Consensus 135 ~~~~~~~~~~~~~l~~~~~-----~~~~i~~vSA~~g~gv 169 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHP-----ELTEIVPISALKGANL 169 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCT-----TCCCEEECBTTTTBSH
T ss_pred CCCHHHHHHHHHHHHHhcc-----CCCeEEEEeCCCCCCH
Confidence 8 54443333333322222 2457889999999887
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=165.28 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=110.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC-CCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD-FPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~-~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|+|||||+|+|++.. ...+...++.|.+....- ... ..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~--------------------~~~------- 78 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFS-VGP--------------------AAE------- 78 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEE-ESC--------------------TTS-------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEE-ecC--------------------CCC-------
Confidence 456899999999999999999999987 344555555554432211 100 001
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhc---cCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~---aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.||||||+....... .....+...+..++.. +|++++|+|+.+ +++..+..++..+...+.|+++|+|
T Consensus 79 ----~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~~~p~i~v~n 152 (223)
T 4dhe_A 79 ----PVAHLVDLPGYGYAEVPG-AAKAHWEQLLSSYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPTGKPIHSLLT 152 (223)
T ss_dssp ----CSEEEEECCCCCSSCCCS-THHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGGCCCEEEEEE
T ss_pred ----CcEEEEcCCCCCcccCCh-hhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEEe
Confidence 469999999987642211 1112234445555544 888999999996 7788888888999888899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccc---cCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKV---LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l---~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+...........+... ......+++.+||++|.|+
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 153 KCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred ccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCH
Confidence 999998765433322222112111 0124568899999999887
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=176.00 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=111.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+|+|++|||||||+|+|+|.++..+...|++|+++...+.... +
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~----------------------~---------- 54 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG----------------------R---------- 54 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET----------------------T----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC----------------------C----------
Confidence 35799999999999999999999998766677777777654432211 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC--CCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH--DDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~~vilVlNK~Dl 213 (551)
.++.+|||||+.+... .+. ..+......++..+|++++|+|+++ +.+..+..+++.+.+. +.|+++|+||+|+
T Consensus 55 -~~l~l~DTpG~~~~~~-~l~--~~~~~~~~~~l~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 55 -RQIVFVDTPGLHKPMD-ALG--EFMDQEVYEALADVNAVVWVVDLRH-PPTPEDELVARALKPLVGKVPILLVGNKLDA 129 (301)
T ss_dssp -EEEEEEECCCCCCCCS-HHH--HHHHHHHHHHTSSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred -cEEEEecCccccchhh-HHH--HHHHHHHHHHHhcCCEEEEEEECCC-CCChHHHHHHHHHHhhcCCCCEEEEEECccc
Confidence 4589999999986422 111 1255667778899999999999986 6777777777788776 8999999999999
Q ss_pred CCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..... +.+... .+ .+..+++++||++|.++
T Consensus 130 ~~~~~~~~~~~~----~~-----~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 130 AKYPEEAMKAYH----EL-----LPEAEPRMLSALDERQV 160 (301)
T ss_dssp CSSHHHHHHHHH----HT-----STTSEEEECCTTCHHHH
T ss_pred CCchHHHHHHHH----Hh-----cCcCcEEEEeCCCCCCH
Confidence 86544 322211 11 23446889999887766
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=172.94 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=107.9
Q ss_pred EeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHH
Q psy11743 142 VDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMR 221 (551)
Q Consensus 142 IDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~ 221 (551)
=+-||+.. ...+++...+.++|+|++|+|++. +.+.....+.+++ .++|.++|+||+|+.+.... +
T Consensus 4 ~w~PGhm~----------ka~~~~~~~l~~aDvVl~VvDAr~-p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~-~ 69 (282)
T 1puj_A 4 QWFPGHMA----------KARREVTEKLKLIDIVYELVDARI-PMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVT-Q 69 (282)
T ss_dssp -----CTT----------HHHHHHHHHGGGCSEEEEEEETTS-TTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHH-H
T ss_pred cCCchHHH----------HHHHHHHHHHhhCCEEEEEEeCCC-CCccCCHHHHHHH--CCCCEEEEEECcccCCHHHH-H
Confidence 35788864 156788899999999999999997 4554433444444 47999999999999986443 2
Q ss_pred HHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCcc
Q psy11743 222 VYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDA 301 (551)
Q Consensus 222 ~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 301 (551)
.+...+... ..+++++||.++.++ .+|++.+..+.. +...+... . .
T Consensus 70 ~~~~~~~~~-------g~~~i~iSA~~~~gi-------------~~L~~~i~~~l~--------~~~~~~~~-~-----~ 115 (282)
T 1puj_A 70 QWKEHFENQ-------GIRSLSINSVNGQGL-------------NQIVPASKEILQ--------EKFDRMRA-K-----G 115 (282)
T ss_dssp HHHHHHHTT-------TCCEEECCTTTCTTG-------------GGHHHHHHHHHH--------HHHHHHHH-T-----T
T ss_pred HHHHHHHhc-------CCcEEEEECCCcccH-------------HHHHHHHHHHHH--------HHHHHHHh-c-----C
Confidence 233333211 236788999988887 334444422211 00100000 0 0
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
....+++++++|.|||||||++|+|.+.. .+.++..|++|+..+....+..+.++||||+..+..
T Consensus 116 ~~~~~~~v~~vG~~nvGKSsliN~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 116 VKPRAIRALIIGIPNVGKSTLINRLAKKN--IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKF 180 (282)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSC--CC------------CCEEETTTEEEEECCCCCCSCC
T ss_pred CCCCCceEEEEecCCCchHHHHHHHhcCc--eeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCCC
Confidence 12356899999999999999999999987 478999999998655444466889999999998764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=154.38 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=105.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|+|||||+|+|++.........++.|.+...... +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~-------------- 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-------------------N-------------- 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-------------------T--------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE-------------------C--------------
Confidence 4568999999999999999999999885444444444433321100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhcc---CEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV---DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~a---D~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
..+.+|||||+....... .....+......++..+ |++++|+|+.. .....+..+..++...+.|+++|+||
T Consensus 68 ---~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK 142 (195)
T 3pqc_A 68 ---SKYYFVDLPGYGYAKVSK-KERMLWKRLVEDYFKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSLNIPFTIVLTK 142 (195)
T ss_dssp ---TTEEEEECCCBSSSCCCH-HHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---CcEEEEECCCCccccCCh-hhHHHHHHHHHHHHhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 348899999976532111 11122344444555544 99999999986 67777778888888889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..+............. .....+++.+||++|.|+
T Consensus 143 ~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 143 MDKVKMSERAKKLEEHRKVFS---KYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHH---SSCCSCEEECCTTTCTTH
T ss_pred hhcCChHHHHHHHHHHHHHHh---hcCCCceEEEecCCCCCH
Confidence 999865433222221111111 123357889999999887
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=156.27 Aligned_cols=158 Identities=17% Similarity=0.211 Sum_probs=101.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+ ......++.|.+..... .+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------------------~~------------- 68 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-------------------IN------------- 68 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE-------------------ET-------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE-------------------EC-------------
Confidence 3568999999999999999999999873 22233333333222110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhcc---CEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERV---DRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~a---D~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
..+.+|||||+...... ......+......++..+ |++++|+|+.+ +.+..+..++.++...+.|+++|+|
T Consensus 69 ----~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p~i~v~n 142 (195)
T 1svi_A 69 ----DELHFVDVPGYGFAKVS-KSEREAWGRMIETYITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYYGIPVIVIAT 142 (195)
T ss_dssp ----TTEEEEECCCBCCCSSC-HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ----CcEEEEECCCCCccccC-HHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 35899999998653221 111122445555666666 99999999986 6777777778888878899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++..........+.. ....+++.+||++|.|+
T Consensus 143 K~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gv 182 (195)
T 1svi_A 143 KADKIPKGKWDKHAKVVRQTLNI---DPEDELILFSSETKKGK 182 (195)
T ss_dssp CGGGSCGGGHHHHHHHHHHHHTC---CTTSEEEECCTTTCTTH
T ss_pred CcccCChHHHHHHHHHHHHHHcc---cCCCceEEEEccCCCCH
Confidence 99998765443322222211222 23457889999999887
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=155.67 Aligned_cols=147 Identities=15% Similarity=0.175 Sum_probs=90.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +.... . .
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~-----------------~----~-------- 63 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDG-----------------N----K-------- 63 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETT-----------------E----E--------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECC-----------------e----E--------
Confidence 45799999999999999999999987531 1122111121111 11100 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 64 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 129 (195)
T 1x3s_A 64 ---AKLAIWDTAGQER-----------FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129 (195)
T ss_dssp ---EEEEEEEECSSGG-----------GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred ---EEEEEEeCCCchh-----------hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Confidence 3489999999653 333456678999999999999852212222345555543 3688999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+......... ..+++.+||+++.|+
T Consensus 130 K~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 130 KIDKENREVDRNEGLKFARKH-------SMLFIEASAKTCDGV 165 (195)
T ss_dssp CTTSSSCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred CCcCcccccCHHHHHHHHHHc-------CCEEEEecCCCCCCH
Confidence 999954211111111111111 236788999999887
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=164.48 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=105.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+|+|++|||||||+|+|+|..+..+...+++|+++...+.... .
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~----------------------~---------- 55 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG----------------------A---------- 55 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET----------------------T----------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC----------------------C----------
Confidence 35899999999999999999999987555556666666554432211 0
Q ss_pred ccCeEEEeCCCCC-CCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGIL-SGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~-~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
.++.++||||+. ... ..+. ..+...+..++..+|++++|+|+.. ++..+..+++.+...+.|+++|+||+|+.
T Consensus 56 -~~i~~iDTpG~~~~~~-~~l~--~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 56 -YQAIYVDTPGLHMEEK-RAIN--RLMNKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp -EEEEEESSSSCCHHHH-HHHH--HHHTCCTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred -eeEEEEECcCCCccch-hhHH--HHHHHHHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 358999999997 211 1010 0122233445689999999999974 77777778888887889999999999998
Q ss_pred C-HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 D-HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~-~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. .....+...... . ......++.+||+++.++
T Consensus 130 ~~~~~~~~~l~~l~-~-----~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 130 QEKADLLPHLQFLA-S-----QMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCHHHHHHHHHHHH-T-----TSCCSEEEECCTTTTTTH
T ss_pred ccHHHHHHHHHHHH-H-----hcCcCceEEEECCCCCCH
Confidence 7 444333332221 1 112346789999998887
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=168.88 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=109.6
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH----HHHHHHHHHHHHcccccCC
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ----QLMRVYGALMWSLGKVLQT 236 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~----~~~~~~~~~~~~l~~l~~~ 236 (551)
|.+.+..+.++++++++|+|++++. .....++.+.+ .++|+++|+||+|+++.+ ...+.....+...+ .
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~-~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g----~ 133 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFN-GSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG----L 133 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSG-GGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT----C
T ss_pred HHHHHHHhhccCcEEEEEEECCCCC-CchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC----C
Confidence 7778888889999999999999632 22222333333 268999999999998752 22222222222222 2
Q ss_pred CCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecC
Q psy11743 237 PEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYS 316 (551)
Q Consensus 237 ~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (551)
...+++++||++|.|+ ++|++.+..+ . ...+++++|.+|
T Consensus 134 ~~~~v~~iSA~~g~gi-------------~~L~~~I~~~------------~----------------~~~~i~~vG~~n 172 (369)
T 3ec1_A 134 CPVDVCLVSAAKGIGM-------------AKVMEAINRY------------R----------------EGGDVYVVGCTN 172 (369)
T ss_dssp CCSEEEECBTTTTBTH-------------HHHHHHHHHH------------H----------------TTSCEEEECCTT
T ss_pred CcccEEEEECCCCCCH-------------HHHHHHHHhh------------c----------------ccCcEEEEcCCC
Confidence 2246789999998887 4555544211 0 134799999999
Q ss_pred CChhHHHHHHHhC-----CCCcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 317 TGKTTFIRYLLER-----DFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 317 ~gKss~~n~l~~~-----~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
+||||++|+|++. . .+.++..|+||+......-+..+.++||||+.++.
T Consensus 173 vGKStliN~L~~~~~~~~~--~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 173 VGKSTFINRIIEEATGKGN--VITTSYFPGTTLDMIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp SSHHHHHHHHHHHHHHTTC--CCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCS
T ss_pred CchHHHHHHHHhhccCCcc--ceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHH
Confidence 9999999999998 3 37789999999865544445568999999998765
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-17 Score=162.10 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=98.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|+|... .+...|+.|.+....... ++ +
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~-----------------~~-----~----------- 47 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFL-----------------LG-----E----------- 47 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEE-----------------ET-----T-----------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEE-----------------EC-----C-----------
Confidence 6899999999999999999999863 234445555554433211 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.+....... ..........++ .++|++++|+|+++ ......+..++.+.+.|+++|+||+|+.
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~-~~~~e~i~~~~~~~~~~d~vi~VvDas~---~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEG-ISQDEQIAAQSVIDLEYDCIINVIDACH---LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEEECCCCSSCC-------CHHHHHHHHHHHHSCCSEEEEEEEGGG---HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred eEEEEEeCCCcccccccccC-CCHHHHHHHHHHhhCCCCEEEEEeeCCC---chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 35899999999763221000 001123444555 89999999999985 2455567778888899999999999986
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...............++ .+++.+||++|.|+
T Consensus 124 ~~~~~~~~~~~l~~~lg-------~~vi~~SA~~g~gi 154 (256)
T 3iby_A 124 EHRGISIDTEKLESLLG-------CSVIPIQAHKNIGI 154 (256)
T ss_dssp HHTTCEECHHHHHHHHC-------SCEEECBGGGTBSH
T ss_pred CcCCcHHHHHHHHHHcC-------CCEEEEECCCCCCH
Confidence 44321111111222222 37899999999887
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=143.25 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=96.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|+|||||+|+|++.........+..|.+....... + .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-----~~----------- 48 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVE-----------------T-----DR----------- 48 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEE-----------------E-----TT-----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEE-----------------e-----CC-----------
Confidence 68999999999999999999998754333333333332221110 0 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.++||||...... . ...+......++..+|++++|+|+++ ..+.....+...+...+.|+++|+||+|+.+.
T Consensus 49 ~~~~l~Dt~G~~~~~~--~--~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 49 GRFLLVDTGGLWSGDK--W--EKKIQEKVDRALEDAEVVLFAVDGRA-ELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp EEEEEEECGGGCSSSS--C--CHHHHHHHHHHTTTCSEEEEEEESSS-CCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred ceEEEEECCCCCCccc--h--HHHHHHHHHHHHHhCCEEEEEEECCC-cccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 3488999999876321 1 11245556677899999999999996 67777667777777778999999999999865
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++. . ..+. .....+.+.+||++|.|+
T Consensus 124 ~~~---~-~~~~------~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 124 ELY---L-GPLY------GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp GGG---C-GGGG------GGSSCSCEECBTTTTBSH
T ss_pred hHh---H-HHHH------hCCCCCeEEEecccCCCh
Confidence 211 0 1111 112225788999998887
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-17 Score=148.31 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=95.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+++|.+|||||||+|+|++..+.. ...+..+.+... .+.. .+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------~~------- 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTV-----------------------ND------- 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEE-----------------------TT-------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEe-----------------------CC-------
Confidence 356899999999999999999999987531 112222211110 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.+|||||...-.. .....+..+|++++|+|+.+ +......+.+..+...+.|+++|+||+|
T Consensus 55 ----~~~~l~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~~~~p~ilv~nK~D 118 (178)
T 2lkc_A 55 ----KKITFLDTPGHEAFTT-----------MRARGAQVTDIVILVVAADD-GVMPQTVEAINHAKAANVPIIVAINKMD 118 (178)
T ss_dssp ----EEEEESCCCSSSSSSC-----------SCCSSCCCCCEEEEEEETTC-CCCHHHHHHHHHHGGGSCCEEEEEETTT
T ss_pred ----ceEEEEECCCCHHHHH-----------HHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHhCCCCEEEEEECcc
Confidence 3478999999865211 11233578999999999986 5666666777777777899999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCC--CceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTP--EVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~--~~~~v~iSa~~g~~~ 252 (551)
+.+... .+ ....+.....+.... ..+++.+||++|.|+
T Consensus 119 l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 119 KPEANP-DR-VMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp SSCSCH-HH-HHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred CCcCCH-HH-HHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 986311 11 111222222221111 257899999988877
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=150.79 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=93.0
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....++|+|+|.+|||||||+|+|++..+..+ ...+|.......... ..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~--~~~~t~~~~~~~~~~----------------------~~------- 62 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK--HITATVGYNVETFEK----------------------GR------- 62 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC------CCCCCSSEEEEEEEE----------------------TT-------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc--ccccccceeEEEEEe----------------------CC-------
Confidence 34568999999999999999999999886422 223343321111000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----------C
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-----------D 201 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----------~ 201 (551)
..+.+|||||... +......++..+|++|+|+|+.+.........++..+... +
T Consensus 63 ----~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (199)
T 4bas_A 63 ----VAFTVFDMGGAKK-----------FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR 127 (199)
T ss_dssp ----EEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCB
T ss_pred ----EEEEEEECCCCHh-----------HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCC
Confidence 3589999999854 3334445678999999999998622222333444444433 7
Q ss_pred CcEEEEEcCCCCCCH---HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 202 DKIRIVLNKADMVDH---QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~---~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.|+++|+||+|+... +++.+.+. +.........+++.+||++|.|+
T Consensus 128 ~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~g~gv 176 (199)
T 4bas_A 128 VPFLFFANKMDAAGAKTAAELVEILD-----LTTLMGDHPFVIFASNGLKGTGV 176 (199)
T ss_dssp CCEEEEEECTTSTTCCCHHHHHHHHT-----HHHHHTTSCEEEEECBTTTTBTH
T ss_pred CCEEEEEECcCCCCCCCHHHHHHHhc-----chhhccCCeeEEEEeeCCCccCH
Confidence 899999999999865 33322221 11111223457889999999887
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-17 Score=148.68 Aligned_cols=146 Identities=15% Similarity=0.085 Sum_probs=77.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++.........++.+... .+.... ..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~-----------------~~-------------- 48 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR--SIVVDG-----------------EE-------------- 48 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE--EEEETT-----------------EE--------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE--EEEECC-----------------EE--------------
Confidence 468999999999999999999987754333333333221 111110 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+||+
T Consensus 49 -~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 49 -ASLMVYDIWEQDG-----------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp -EEEEEEECC--------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred -EEEEEEECCCCcc-----------chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 3488999999764 334455667899999999999852211222344444432 368999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..+........+. .. ...+.+.+||++|.|+
T Consensus 117 Dl~~~~~~~~~~~~~~~-~~-----~~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 117 DLVRSREVSVDEGRACA-VV-----FDCKFIETSAALHHNV 151 (166)
T ss_dssp TCCSSCCSCHHHHHHHH-HH-----TTCEEEECBGGGTBSH
T ss_pred ccccccccCHHHHHHHH-HH-----hCCcEEEeccCCCCCH
Confidence 99754221111111111 11 1247889999999887
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-17 Score=159.72 Aligned_cols=149 Identities=17% Similarity=0.093 Sum_probs=99.1
Q ss_pred hHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCce
Q psy11743 161 FTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVA 240 (551)
Q Consensus 161 ~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (551)
..++++..+.++|+|++|+|++. +.+.....+. .+ ++|.++|+||+|+++..... .+...+...+ .+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~-P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~-~~~~~~~~~g-------~~ 77 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARA-PFATSAYGVD-FS---RKETIILLNKVDIADEKTTK-KWVEFFKKQG-------KR 77 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTS-TTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHH-HHHHHHHHTT-------CC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCC-CCcCcChHHH-hc---CCCcEEEEECccCCCHHHHH-HHHHHHHHcC-------Ce
Confidence 35678888999999999999996 4443322222 22 79999999999999865432 2333332222 24
Q ss_pred EEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChh
Q psy11743 241 RVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKT 320 (551)
Q Consensus 241 ~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKs 320 (551)
+ ++||.++.|+ ++|++.+... -.+++++|.||||||
T Consensus 78 v-~iSa~~~~gi-------------~~L~~~l~~~------------------------------~~~v~~vG~~~vGKS 113 (262)
T 3cnl_A 78 V-ITTHKGEPRK-------------VLLKKLSFDR------------------------------LARVLIVGVPNTGKS 113 (262)
T ss_dssp E-EECCTTSCHH-------------HHHHHHCCCT------------------------------TCEEEEEESTTSSHH
T ss_pred E-EEECCCCcCH-------------HHHHHHHHHh------------------------------hhheEEeCCCCCCHH
Confidence 5 8999887765 4455544211 058999999999999
Q ss_pred HHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 321 TFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 321 s~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
|++|.|.+... +.++..||+|+.......+..+.++||||+..+..
T Consensus 114 slin~l~~~~~--~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 114 TIINKLKGKRA--SSVGAQPGITKGIQWFSLENGVKILDTPGILYKNI 159 (262)
T ss_dssp HHHHHHHTTCC------------CCSCEEECTTSCEEESSCEECCCCC
T ss_pred HHHHHHhcccc--cccCCCCCCccceEEEEeCCCEEEEECCCcccCcC
Confidence 99999999873 57888999998555444466889999999998763
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-17 Score=163.46 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=97.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|+|... .+...|+.|.+.....+... +
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~----------------------~--------- 49 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTT----------------------D--------- 49 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECS----------------------S---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeC----------------------C---------
Confidence 468999999999999999999999873 34455666655543322110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchH-HHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFT-GVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~-~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||+.+... ........ .....+ ...+|++++|+|+++ ......+...+.+.+.|+++|+||+
T Consensus 50 --~~~~liDtpG~~~~~~--~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~~~p~ivv~NK~ 122 (274)
T 3i8s_A 50 --HQVTLVDLPGTYSLTT--ISSQTSLDEQIACHYILSGDADLLINVVDASN---LERNLYLTLQLLELGIPCIVALNML 122 (274)
T ss_dssp --CEEEEEECCCCSCSCC------CCHHHHHHHHHHHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHHTCCEEEEEECH
T ss_pred --CceEEEECcCCCcccc--ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC---hHHHHHHHHHHHhcCCCEEEEEECc
Confidence 3589999999986331 11001122 222333 379999999999985 2444566667777789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..............++ .+++.+||++|.|+
T Consensus 123 Dl~~~~~~~~~~~~l~~~lg-------~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 123 DIAEKQNIRIEIDALSARLG-------CPVIPLVSTRGRGI 156 (274)
T ss_dssp HHHHHTTEEECHHHHHHHHT-------SCEEECCCGGGHHH
T ss_pred cchhhhhHHHHHHHHHHhcC-------CCEEEEEcCCCCCH
Confidence 98643221111111112222 36889999988776
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=142.44 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=89.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|+|||||+|+|++..+. .....++.+.......-. +. .
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~----------------~~----~---------- 50 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVID----------------GE----T---------- 50 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEET----------------TE----E----------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEEC----------------CE----E----------
Confidence 468999999999999999999998753 222222222221110000 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 51 -~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 51 -CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp -EEEEEEECCCCSS-----------CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred -EEEEEEECCCchh-----------hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEch
Confidence 2478999999764 34455667889999999999985211122233443333 2378999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.........+ .+++.+||++|.|+
T Consensus 119 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 119 DLAARTVESRQAQDLARSYG-------IPYIETSAKTRQGV 152 (166)
T ss_dssp TCSCCCSCHHHHHHHHHHHT-------CCEEEECTTTCTTH
T ss_pred hhhhcccCHHHHHHHHHHcC-------CeEEEecCCCCCCH
Confidence 98763211111122221222 36788999998887
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=144.89 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++..+. ...+.++.+.......-+ +..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~----------------~~~-------------- 51 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVID----------------GET-------------- 51 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEET----------------TEE--------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEEC----------------CcE--------------
Confidence 468999999999999999999998752 222223333222111100 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 52 -~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 119 (189)
T 4dsu_A 52 -CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 119 (189)
T ss_dssp -EEEEEEECCCC--------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECT
T ss_pred -EEEEEEECCCcHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECc
Confidence 2378899999764 33345567789999999999985211112233333332 3478999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.........+ .+++.+||++|.|+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 120 DLPSRTVDTKQAQDLARSYG-------IPFIETSAKTRQGV 153 (189)
T ss_dssp TSSSCSSCHHHHHHHHHHHT-------CCEEECCTTTCTTH
T ss_pred cCcccccCHHHHHHHHHHcC-------CeEEEEeCCCCCCH
Confidence 99753211111122221122 36788999999987
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=143.93 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=89.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++..+. ....+|+......... +.+ .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~-----~~~----------~--------------- 49 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQVE-----VDC----------Q--------------- 49 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC---CSCCCCSEEEEEEEEE-----SSS----------C---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCCccceEEEEEE-----ECC----------E---------------
Confidence 468999999999999999999997652 2222332221110000 000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 50 ~~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 50 QCMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEEEECSSCS-----------STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEEEECCChHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence 03488999999764 33455667889999999999985211111123333332 3478999999999
Q ss_pred CCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.... .+........ .+..+++.+||++|.|+
T Consensus 119 Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 119 DLEDERVVGKEQGQNLARQ------WCNCAFLESSAKSKINV 154 (167)
T ss_dssp TCGGGCCSCHHHHHHHHHH------TTSCEEEECBTTTTBSH
T ss_pred cccccccCCHHHHHHHHHH------ccCCcEEEecCCCCCCH
Confidence 99753211 1111111111 12347889999999887
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=160.85 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=89.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCC-----------ccc---cCCCCcc---cccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER-----------EGS---VPFSPLD---KFGK 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~-----------~~~---i~g~~~~---~~~~ 117 (551)
..|+|+|+|.+|+|||||+|+|+|..+. +.+.+.+|.....+..... ... .++..+. .+..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~l--p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFL--PRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCC--CC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcC--CCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 4689999999999999999999999862 3333333333221111100 000 0111111 0000
Q ss_pred c---------c--cccccceeEEecCCCCccCeEEEeCCCCCCCcccc--cccccchHHHHHHHHhccCEEEEEEeCCCC
Q psy11743 118 F---------G--NSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQR--VDRGYDFTGVLEWFAERVDRIILLFDAHKL 184 (551)
Q Consensus 118 ~---------g--~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~--~~~~~~~~~~~~~~~~~aD~il~VvDa~~~ 184 (551)
+ | ..+......+.+..+-..++.+|||||+....... ......+...+..++..+|++++|+|+...
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 0 0 01111112222222223579999999997522110 111123566778889999999999997433
Q ss_pred CCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 185 DISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 185 ~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
+....+ ..+++.+...+.|+++|+||+|+.+..
T Consensus 181 ~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp CSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred chhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 554333 477888888889999999999998643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=141.75 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=92.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|+|||||+|+|++..+. . ..||...... +.+. .
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~~~-----------------------~-------- 50 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV--T--TIPTIGFNVETVTYK-----------------------N-------- 50 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC--C--CCCCSSEEEEEEEET-----------------------T--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCccceEEEEEC-----------------------C--------
Confidence 4589999999999999999999998753 1 2233322111 1110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-hC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-RG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+ .. .+.|+++|+|
T Consensus 51 ---~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 116 (171)
T 1upt_A 51 ---LKFQVWDLGGLTS-----------IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 116 (171)
T ss_dssp ---EEEEEEEECCCGG-----------GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCChh-----------hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEE
Confidence 4589999999854 2333445568999999999998632222233344333 32 5789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+. .... ..... .....+++.+||++|.|+
T Consensus 117 K~Dl~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 117 KQDMEQAMTSSEM-ANSL-GLPAL-KDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp CTTSTTCCCHHHH-HHHH-TGGGC-TTSCEEEEECCTTTCTTH
T ss_pred CCCCcCCCCHHHH-HHHh-Cchhc-cCCceEEEECcCCCCcCH
Confidence 9999864221111 1111 11111 223347889999999887
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=149.93 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=91.0
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
..+...+|+|+|.+|||||||+|+|++..+... ..+..+.+.... +.... . .
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~----~----- 70 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTVYRHD-----------------K----R----- 70 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCCCCCEEEEEEEEETT-----------------E----E-----
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCC-cCCceeEEEEEEEEEECC-----------------e----E-----
Confidence 344568999999999999999999999875321 112111111111 11000 0 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
..+.+|||||...- ......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 71 ------~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 133 (189)
T 2gf9_A 71 ------IKLQIWDTAGQERY-----------RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133 (189)
T ss_dssp ------EEEEEEECCSCCSS-----------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred ------EEEEEEeCCCcHHH-----------hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 34899999997642 22234456899999999999852211222345554443 47899999
Q ss_pred EcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+...+ .+.........+ .+++.+||++|.|+
T Consensus 134 ~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 134 GNKCDLEDERVVPAEDGRRLADDLG-------FEFFEASAKENINV 172 (189)
T ss_dssp EECTTCGGGCCSCHHHHHHHHHHHT-------CEEEECBTTTTBSH
T ss_pred EECcccccccCCCHHHHHHHHHHcC-------CeEEEEECCCCCCH
Confidence 999999753211 011111221222 36789999999887
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-17 Score=148.92 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=84.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|||||||+|+|++..+. ...+.++.+........+ +.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~----------------~~--------------- 52 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVN----------------GQ--------------- 52 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEET----------------TE---------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEEC----------------CE---------------
Confidence 578999999999999999999987742 222222222221111100 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK~ 211 (551)
...+.+|||||...-. .....++..+|++++|+|+.+.........++..+ ...+.|+++|+||+
T Consensus 53 ~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 121 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYS-----------IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121 (181)
T ss_dssp EEEEEEEECCCCCTTC-----------CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECT
T ss_pred EEEEEEEeCCCchhhh-----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 0247899999987521 12223457899999999998522111222333333 23478999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...+. +......... ..+.+.+||++|.|+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 122 DLHMERVISYEEGKALAESW-------NAAFLESSAKENQTA 156 (181)
T ss_dssp TCTTTCCSCHHHHHHHHHHT-------TCEEEECCTTSHHHH
T ss_pred cchhcceecHHHHHHHHHHh-------CCcEEEEecCCCCCH
Confidence 996432211 1111222112 236788999887776
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=158.64 Aligned_cols=191 Identities=17% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE--EEEeCCC-ccc---cCCCCcccccc-----------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI--AVMYDER-EGS---VPFSPLDKFGK----------- 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~--~i~~~~~-~~~---i~g~~~~~~~~----------- 117 (551)
..|+|+|+|.+|||||||+|+|+|.++.. ...+.++.... .+.+... ... ..|..|.....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~--~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLP--RGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSC--CCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCC--CCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999998642 12112221111 1111110 000 01111111100
Q ss_pred c-c--cccccceeEEecCCCCccCeEEEeCCCCCCCccccccc--ccchHHHHHHHHhccCEEE-EEEeCCCCCCChHHH
Q psy11743 118 F-G--NSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDR--GYDFTGVLEWFAERVDRII-LLFDAHKLDISDEFR 191 (551)
Q Consensus 118 ~-g--~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~--~~~~~~~~~~~~~~aD~il-~VvDa~~~~~~~~~~ 191 (551)
. | ..+......+.+..+-...+.+|||||+.......... ...+...+..++..++.++ +|+|+.. +.+..+.
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS-CGGGCHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc-chhhhHH
Confidence 0 0 11111111122222222579999999997532100000 0125666777888888666 7999986 5555553
Q ss_pred -HHHHHHhCCCCcEEEEEcCCCCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 192 -RSIEALRGHDDKIRIVLNKADMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 192 -~~l~~l~~~~~~vilVlNK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+++.+...+.|+++|+||+|+.+... ..+... .........+.+++.+||++|.|+
T Consensus 182 ~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 182 LKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLE----NKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp HHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHT----TCSSCCTTCEEECCCCCCBCTTSC
T ss_pred HHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHh----CCcCcCCCCcEEEECCChhhcccc
Confidence 577777777899999999999986432 111111 100101123457788999999988
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=172.53 Aligned_cols=193 Identities=17% Similarity=0.143 Sum_probs=121.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccc------cCCCCcc---cc---------
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGS------VPFSPLD---KF--------- 115 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~------i~g~~~~---~~--------- 115 (551)
...|+|+|+|.+|+|||||+|+|+|.++ ++.+.+++|.+.+.+........ ..+..+. .+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~--LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~ 126 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 126 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCC--SCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCc--cCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence 3569999999999999999999999886 45666677776555433221111 1111111 11
Q ss_pred --cccccccccceeEEecCCCCccCeEEEeCCCCCCCccc--ccccccchHHHHHHHH-hccCEEEEEEeCCCCCCChHH
Q psy11743 116 --GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQ--RVDRGYDFTGVLEWFA-ERVDRIILLFDAHKLDISDEF 190 (551)
Q Consensus 116 --~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~--~~~~~~~~~~~~~~~~-~~aD~il~VvDa~~~~~~~~~ 190 (551)
...+..+......+.+..+...+++||||||+...... ..+....+...+..++ ..+|++|+|+|++. +....+
T Consensus 127 ~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~-~~~~~d 205 (772)
T 3zvr_A 127 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANSD 205 (772)
T ss_dssp HHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS-CSSSCH
T ss_pred hhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC-CcchhH
Confidence 01112233333444555555578999999999873211 1000112445555555 58899999999996 666666
Q ss_pred H-HHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 191 R-RSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 191 ~-~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. .++..+...++|+++|+||+|+++.......+ ...........+.+++++||++|.|+
T Consensus 206 ~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~i---l~~~~~~l~lg~~~VV~iSA~~G~Gv 265 (772)
T 3zvr_A 206 ALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGK 265 (772)
T ss_dssp HHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHH---HTTCSSCCSSCEEECCCCCCEESSSS
T ss_pred HHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHH---HHHHhhhhhccCCceEEecccccccc
Confidence 5 78888888899999999999998754321111 11000001234567889999999987
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=144.79 Aligned_cols=149 Identities=15% Similarity=0.070 Sum_probs=84.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++..+......++.+...... .... .
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------~-------------- 50 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTL-TVDG-----------------E-------------- 50 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEE-EETT-----------------E--------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEE-EECC-----------------E--------------
Confidence 3578999999999999999999998764333333222211111 1110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
...+.++||||.... ++......++..+|++++|+|+.+.........+...+.. .+.|+++|+||
T Consensus 51 -~~~~~~~D~~g~~~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK 120 (175)
T 2nzj_A 51 -DTTLVVVDTWEAEKL---------DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120 (175)
T ss_dssp -EEEEEEECCC----------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred -EEEEEEEecCCCCcc---------chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence 024889999998641 1223344566889999999999852211222344444443 27899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++. +......... ..+.+.+||++|.|+
T Consensus 121 ~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 121 ADLARCREVSVEEGRACAVVF-------DCKFIETSATLQHNV 156 (175)
T ss_dssp TTCTTTCCSCHHHHHHHHHHH-------TSEEEECBTTTTBSH
T ss_pred hhhccccccCHHHHHHHHHHc-------CCeEEEEecCCCCCH
Confidence 9997542211 1111111111 236788999999887
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=9.6e-16 Score=139.31 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=91.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|++..+. . ..||......... + ..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~-----------------~-----~~----------- 43 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVE-----------------Y-----KN----------- 43 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--C--CCCCSSCCEEEEE-----------------C-----SS-----------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--c--ccCcCceeEEEEE-----------------E-----CC-----------
Confidence 37999999999999999999988753 1 2334332111000 0 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~D 212 (551)
..+.+|||||... +......++.++|++++|+|+++.........++..+.. .+.|+++|+||+|
T Consensus 44 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 44 ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp CEEEEEECCCCGG-----------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEEEEcCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcC
Confidence 3589999999853 455667788999999999999852212222334444332 3789999999999
Q ss_pred CCCHHHHHHHHHHHHHHccc-ccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGK-VLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~-l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.....+ +... ++. .......+++.+||++|.|+
T Consensus 113 l~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi 149 (164)
T 1r8s_A 113 LPNAMNAAE-ITDK---LGLHSLRHRNWYIQATCATSGDGL 149 (164)
T ss_dssp STTCCCHHH-HHHH---TTGGGCSSCCEEEEECBTTTTBTH
T ss_pred CcCCCCHHH-HHHH---hCcccccCccEEEEEcccCCCcCH
Confidence 976422111 1111 221 11223346889999998887
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=145.44 Aligned_cols=149 Identities=18% Similarity=0.153 Sum_probs=86.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|+|||||+|+|++..+... ...+|+........-. +. +.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~t~~~~~~~~~~~----~~----------~~-------------- 58 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAG--TFISTVGIDFRNKVLD----VD----------GV-------------- 58 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCC--CCCCCCSCEEEEEEEE----ET----------TE--------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCC--CcCCceeeEEEEEEEE----EC----------CE--------------
Confidence 457999999999999999999999886322 2223322211100000 00 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 59 -~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 126 (180)
T 2g6b_A 59 -KVKLQMWDTAGQER-----------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126 (180)
T ss_dssp -EEEEEEEECCCC-------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred -EEEEEEEeCCCcHH-----------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 02489999999754 34445566789999999999985211112234444443 3578999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...+. +......... ..+.+.+||+++.|+
T Consensus 127 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 127 DSAHERVVKREDGEKLAKEY-------GLPFMETSAKTGLNV 161 (180)
T ss_dssp STTSCCCSCHHHHHHHHHHH-------TCCEEECCTTTCTTH
T ss_pred ccCcccccCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 998532110 1111111111 136788999999887
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=142.29 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=88.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+. ...+.++.+.... +.... . .
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-----------------~----~-------- 51 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDG-----------------E----E-------- 51 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETT-----------------E----E--------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECC-----------------E----E--------
Confidence 3578999999999999999999998752 2222222222211 11100 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 52 ---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 117 (168)
T 1u8z_A 52 ---VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117 (168)
T ss_dssp ---EEEEEEECCC--------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred ---EEEEEEECCCcch-----------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 2488999999754 45566778899999999999985221122223333332 24789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+. .+......... ..+++.+||++|.|+
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 154 (168)
T 1u8z_A 118 KSDLEDKRQVSVEEAKNRADQW-------NVNYVETSAKTRANV 154 (168)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHH-------TCEEEECCTTTCTTH
T ss_pred CccccccCccCHHHHHHHHHHc-------CCeEEEeCCCCCCCH
Confidence 9999653211 01111111111 236788999999887
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=143.94 Aligned_cols=147 Identities=12% Similarity=0.200 Sum_probs=91.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+.... .+..+.+... .+.... .
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~------------- 59 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVND-----------------A------------- 59 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETT-----------------E-------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECC-----------------E-------------
Confidence 4478999999999999999999998763221 1111111111 111110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 60 --~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK 126 (181)
T 2efe_B 60 --TVKFEIWDTAGQER-----------YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNK 126 (181)
T ss_dssp --EEEEEEEECCCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred --EEEEEEEeCCCChh-----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 03489999999643 344456678899999999999852211233445554443 36889999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++ .+......... ..+++.+||++|.|+
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 127 SDLLDARKVTAEDAQTYAQEN-------GLFFMETSAKTATNV 162 (181)
T ss_dssp TTCTTTCCSCHHHHHHHHHHT-------TCEEEECCSSSCTTH
T ss_pred CcccccccCCHHHHHHHHHHc-------CCEEEEEECCCCCCH
Confidence 999753221 11111121111 236788999999887
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=166.19 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=103.6
Q ss_pred chHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCCCHH----HHHHHHHHHHHHcccc
Q psy11743 160 DFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMVDHQ----QLMRVYGALMWSLGKV 233 (551)
Q Consensus 160 ~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~~~~----~~~~~~~~~~~~l~~l 233 (551)
.|.+.+..+.+.+|++++|+|++++ ...+...+.+ .++|+++|+||+|+.+.+ ...+.........+
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~-----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g-- 130 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDF-----NGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG-- 130 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSH-----HHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhccCcEEEEEEECCCC-----cccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC--
Confidence 3777888888899999999999852 1222222221 378999999999998643 22222222222222
Q ss_pred cCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEe
Q psy11743 234 LQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVG 313 (551)
Q Consensus 234 ~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 313 (551)
....+++++||++|.|+ ++|++.+..+ . ...+++++|
T Consensus 131 --~~~~~v~~iSA~~g~gi-------------~~L~~~l~~~------------~----------------~~~~i~~vG 167 (368)
T 3h2y_A 131 --LKPEDVFLISAAKGQGI-------------AELADAIEYY------------R----------------GGKDVYVVG 167 (368)
T ss_dssp --CCCSEEEECCTTTCTTH-------------HHHHHHHHHH------------H----------------TTSCEEEEE
T ss_pred --CCcccEEEEeCCCCcCH-------------HHHHhhhhhh------------c----------------ccceEEEec
Confidence 22236789999999987 4555554211 0 135799999
Q ss_pred ecCCChhHHHHHHHhCCC----CcccccCCCcccceEEEEecCCCccccCCceeecCC
Q psy11743 314 QYSTGKTTFIRYLLERDF----PGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 314 ~~~~gKss~~n~l~~~~~----~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
.+|+||||++|+|++... ....++..|+||+......-+..+.++||||+.++.
T Consensus 168 ~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 168 CTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp BTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTT
T ss_pred CCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHH
Confidence 999999999999999731 125689999999855544334458999999998865
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=142.61 Aligned_cols=147 Identities=21% Similarity=0.284 Sum_probs=91.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+.. ...+.+..+... .+.... .
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~------------- 53 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQN-----------------E------------- 53 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETT-----------------E-------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECC-----------------e-------------
Confidence 45789999999999999999999987532 112211111111 111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK 210 (551)
...+.+|||||+.. +......++..+|++++|+|+.+.........++..+. ....|+++|+||
T Consensus 54 --~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK 120 (170)
T 1z0j_A 54 --LHKFLIWDTAGLER-----------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120 (170)
T ss_dssp --EEEEEEEEECCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred --EEEEEEEcCCCchh-----------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 03489999999853 34455667899999999999985222222234555444 346789999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..+.. +......... ..+++.+||++|.|+
T Consensus 121 ~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 121 CDLTDVREVMERDAKDYADSI-------HAIFVETSAKNAINI 156 (170)
T ss_dssp TTCGGGCCSCHHHHHHHHHHT-------TCEEEECBTTTTBSH
T ss_pred CccccccccCHHHHHHHHHHc-------CCEEEEEeCCCCcCH
Confidence 9997532211 1111111111 246788999998887
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-16 Score=143.24 Aligned_cols=148 Identities=12% Similarity=0.142 Sum_probs=91.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+... ..+..+.+.... +.... . .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~----~------- 63 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD-CPHTIGVEFGTRIIEVSG-----------------Q----K------- 63 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-CTTSCCCCEEEEEEEETT-----------------E----E-------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECC-----------------e----E-------
Confidence 3458999999999999999999999875311 111111111111 11100 0 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 64 ----~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 128 (179)
T 1z0f_A 64 ----IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128 (179)
T ss_dssp ----EEEEEEECTTGGG-----------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ----EEEEEEECCCChH-----------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3489999999643 45566778899999999999985211122233443333 35789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+. .+......... ..+++.+||++|.|+
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 129 KADLEAQRDVTYEEAKQFAEEN-------GLLFLEASAKTGENV 165 (179)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred CcccccccccCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 9999643211 11111222111 236789999999887
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-17 Score=157.58 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=88.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++..+.. ...+.............. ..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------------------------------~~ 58 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEK-NYNATVGAVNHPVTFLDD------------------------------QG 58 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTC-EEETTTTEEEEEEEEEBT------------------------------TS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeeEEEEEEeC------------------------------CC
Confidence 45799999999999999999999877531 111111111111111100 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHh---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~---~~~~~vilVlNK 210 (551)
....+.+|||||... +......++..+|++++|+|+.+ ..+.. ...++..+. ..+.|+++|+||
T Consensus 59 ~~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK 126 (218)
T 4djt_A 59 NVIKFNVWDTAGQEK-----------KAVLKDVYYIGASGAILFFDVTS-RITCQNLARWVKEFQAVVGNEAPIVVCANK 126 (218)
T ss_dssp CEEEEEEEEECSGGG-----------TSCCCHHHHTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred cEEEEEEEecCCchh-----------hchHHHHHhhcCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 002389999999754 12223456788999999999985 22222 223333333 446899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++.......+ . .....+++.+||++|.|+
T Consensus 127 ~Dl~~~~~~~~~~~~~~---~---~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEV---L---KGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp TTCC----CCHHHHHHH---T---TTCCCEEEEEBTTTTBTT
T ss_pred CCCccccccCHHHHHHH---H---HHcCCcEEEEecCCCCCH
Confidence 99986533222111111 1 223457899999999998
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-16 Score=148.75 Aligned_cols=156 Identities=16% Similarity=0.220 Sum_probs=93.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|.+|||||||+|+|++..+. ....+..|.+....... + ..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~-----~~--------- 75 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFD-----------------H-----KL--------- 75 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEE-----------------E-----TT---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeee-----------------c-----CC---------
Confidence 4689999999999999999999998752 12222222222111000 0 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC---hHHHHHHHHHhCC--CCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS---DEFRRSIEALRGH--DDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~---~~~~~~l~~l~~~--~~~vilVlN 209 (551)
..+.+|||||+.+.... ++.......+..+...+|++++|+|+++ ..+ .....++..+... +.|+++|+|
T Consensus 76 --~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~l~~~~~~~piilv~n 150 (228)
T 2qu8_A 76 --NKYQIIDTPGLLDRAFE--NRNTIEMTTITALAHINGVILFIIDISE-QCGLTIKEQINLFYSIKSVFSNKSIVIGFN 150 (228)
T ss_dssp --EEEEEEECTTTTTSCGG--GCCHHHHHHHHHHHTSSEEEEEEEETTC-TTSSCHHHHHHHHHHHHTCC-CCCEEEEEE
T ss_pred --CeEEEEECCCCcCcccc--hhhhHHHHHHHHhhccccEEEEEEeccc-ccCcchHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 34899999999653211 1100002233445688999999999986 322 2234566667665 799999999
Q ss_pred CCCCCCHHHHHH----HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++.. .........+ +..+++.+||++|.|+
T Consensus 151 K~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~gi 192 (228)
T 2qu8_A 151 KIDKCNMDSLSIDNKLLIKQILDNVK-----NPIKFSSFSTLTGVGV 192 (228)
T ss_dssp CGGGCC--CCCHHHHHHHHHHHHHCC-----SCEEEEECCTTTCTTH
T ss_pred CcccCCchhhHHHHHHHHHHHHHhcC-----CCceEEEEecccCCCH
Confidence 999986533211 1111111111 2257889999999988
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=146.89 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=84.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+++|.+|||||||+|+|++..+. .....++.+.... +... +..
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-----------------~~~----------- 68 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVID-----------------GET----------- 68 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEET-----------------TEE-----------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEEC-----------------CEE-----------
Confidence 44579999999999999999999998753 2222222222211 1100 000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+
T Consensus 69 ----~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~ 133 (190)
T 3con_A 69 ----CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133 (190)
T ss_dssp ----EEEEEEECCC----------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred ----EEEEEEECCChHH-----------HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 2388999999754 34455567889999999999985211112233333333 2478999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.....+.........+ .+++.+||+++.|+
T Consensus 134 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 170 (190)
T 3con_A 134 NKCDLPTRTVDTKQAHELAKSYG-------IPFIETSAKTRQGV 170 (190)
T ss_dssp ECTTCSCCCSCHHHHHHHHHHHT-------CCEEECCTTTCTTH
T ss_pred ECCcCCcccCCHHHHHHHHHHcC-------CeEEEEeCCCCCCH
Confidence 99998752111111112221122 26788999999887
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=142.77 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=89.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+.. ....++.+.... +.... .
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-----------------~------------- 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDS-----------------S------------- 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETT-----------------E-------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECC-----------------E-------------
Confidence 34789999999999999999999987532 111122222111 11000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........+...+ ...+.|+++|+|
T Consensus 50 --~~~~~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1kao_A 50 --PSVLEILDTAGTEQ-----------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116 (167)
T ss_dssp --EEEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred --EEEEEEEECCCchh-----------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 02488999999764 4556667789999999999998521111222333222 235789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+.. .......... ..+++.+||++|.|+
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 117 KVDLESEREVSSSEGRALAEEW-------GCPFMETSAKSKTMV 153 (167)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHH-------TSCEEEECTTCHHHH
T ss_pred CCcccccccCCHHHHHHHHHHh-------CCCEEEecCCCCcCH
Confidence 99986532211 1111111111 136788999888776
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-16 Score=144.07 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=93.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++..+. ....+|.......... ..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~----------------------~~--------- 66 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN---EDMIPTVGFNMRKITK----------------------GN--------- 66 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEE----------------------TT---------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC---CccCCCCceeEEEEEe----------------------CC---------
Confidence 3578999999999999999999998753 2222333221110000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-C---CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-G---HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~~~vilVlNK 210 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. . .+.|+++|+||
T Consensus 67 --~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (188)
T 1zd9_A 67 --VTIKLWDIGGQPR-----------FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 133 (188)
T ss_dssp --EEEEEEEECCSHH-----------HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred --EEEEEEECCCCHh-----------HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEEC
Confidence 3589999999753 44556677899999999999985222222233444333 2 57899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+. .... .+.. ......+++.+||++|.|+
T Consensus 134 ~Dl~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 134 RDLPGALDEKEL-IEKM-NLSA-IQDREICCYSISCKEKDNI 172 (188)
T ss_dssp TTSTTCCCHHHH-HHHT-TGGG-CCSSCEEEEECCTTTCTTH
T ss_pred CCCccCCCHHHH-HHHh-Chhh-hccCCeeEEEEECCCCCCH
Confidence 999753211111 1111 1111 1223457889999999887
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-16 Score=142.55 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=89.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++..+. ...+.++.+.+.....-+ +.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~----------------~~-------------- 55 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVD----------------GI-------------- 55 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEET----------------TE--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEEC----------------CE--------------
Confidence 4579999999999999999999998642 222222222222111000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+ ...+.|+++|+||
T Consensus 56 -~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (181)
T 2fn4_A 56 -PARLDILDTAGQEE-----------FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123 (181)
T ss_dssp -EEEEEEEECCCTTT-----------TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEEC
T ss_pred -EEEEEEEECCCchh-----------hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 02488999999764 2233456678999999999998521112222333332 3457899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++. ......... ...+++.+||++|.|+
T Consensus 124 ~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 124 ADLESQRQVPRSEASAFGAS-------HHVAYFEASAKLRLNV 159 (181)
T ss_dssp GGGGGGCCSCHHHHHHHHHH-------TTCEEEECBTTTTBSH
T ss_pred cccccccccCHHHHHHHHHH-------cCCeEEEecCCCCCCH
Confidence 9997532211 111111111 1346788999998887
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-16 Score=142.65 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=93.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+|+|.+|||||||+|+|++...+.+...+++|++....... ++ +
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~-----------------~~-----~---------- 51 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH-----------------ID-----G---------- 51 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEE-----------------ET-----T----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEE-----------------EC-----C----------
Confidence 468999999999999999999998754444455555444322111 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK~D 212 (551)
..+.++||||+...... .. .. .......++..+|++++|+|+++ ..+.....++..+.+ .+.|+++|+||+|
T Consensus 52 -~~~~l~Dt~G~~~~~~~-~~-~~-~~~~~~~~~~~ad~~i~v~D~~~-~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 52 -MPLHIIDTAGLREASDE-VE-RI-GIERAWQEIEQADRVLFMVDGTT-TDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp -EEEEEEECCCCSCCSSH-HH-HH-HHHHHHHHHHTCSEEEEEEETTT-CCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred -eEEEEEECCCcccchhH-HH-HH-HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 34789999999752210 10 00 01123356789999999999986 333334455554442 3689999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.... .. .......+++.+||++|.|+
T Consensus 127 l~~~~------------~~-~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 127 ITGET------------LG-MSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HHCCC------------CE-EEEETTEEEEECCTTTCTTH
T ss_pred CCcch------------hh-hhhccCCceEEEeCCCCCCH
Confidence 85321 00 00112357889999999987
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=144.78 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=93.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE----EEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF----IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~----~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
+..++|+|+|.+|||||||+|+|++..+. ....+|.... ..+....... + ... .+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~---~----~~~-~~~--------- 68 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN---SKFITTVGIDFREKRVVYRANGPD---G----AVG-RGQ--------- 68 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEEEECTTSCC---C----SSC-CCE---------
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC---cCcccccceeeeeEEEEEecCCcc---c----ccc-cCc---------
Confidence 44589999999999999999999998753 2222332211 1111111000 0 000 000
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIR 205 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vi 205 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|++
T Consensus 69 ------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 131 (195)
T 3bc1_A 69 ------RIHLQLWDTAGLER-----------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131 (195)
T ss_dssp ------EEEEEEEEECCSGG-----------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE
T ss_pred ------EEEEEEEeCCCcHH-----------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 03589999999843 566677788999999999999852211222344444432 578999
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.+.... .+.........+ .+++.+||+++.|+
T Consensus 132 lv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v 172 (195)
T 3bc1_A 132 LCGNKSDLEDQRAVKEEEARELAEKYG-------IPYFETSAANGTNI 172 (195)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHHT-------CCEEECCTTTCTTH
T ss_pred EEEECcccccccccCHHHHHHHHHHcC-------CCEEEEECCCCCCH
Confidence 99999999753211 111111221122 36788999999887
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.2e-16 Score=145.75 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=91.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+|+|.+|||||||+|+|++..+... ..+..+.+.. ..+.... . .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~----~-------- 56 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTIYRND-----------------K----R-------- 56 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEEEEETT-----------------E----E--------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEEECC-----------------e----E--------
Confidence 457899999999999999999999875321 1111111111 1111000 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 57 ---~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (203)
T 1zbd_A 57 ---IKLQIWDTAGLER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122 (203)
T ss_dssp ---EEEEEEEECCSGG-----------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEEC
T ss_pred ---EEEEEEECCCchh-----------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 3489999999753 455667778999999999999852211222344444443 47899999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .+........++ .+++.+||++|.|+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 123 CDMEDERVVSSERGRQLADHLG-------FEFFEASAKDNINV 158 (203)
T ss_dssp TTCTTSCCSCHHHHHHHHHHHT-------CEEEECBTTTTBSS
T ss_pred cccCcccccCHHHHHHHHHHCC-------CeEEEEECCCCCCH
Confidence 999753211 011111111122 36788999999988
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-16 Score=144.73 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=86.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|+|||||+|+|++..+.. ...+..+.+.......- . +.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~------~----------~~--------------- 50 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDI------N----------GK--------------- 50 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEES------S----------SC---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEE------C----------CE---------------
Confidence 4689999999999999999999987531 11111111111110000 0 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~D 212 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+|
T Consensus 51 ~~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 119 (170)
T 1g16_A 51 KVKLQIWDTAGQER-----------FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119 (170)
T ss_dssp EEEEEEECCTTGGG-----------TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCChh-----------hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 02488999999653 22234556789999999999985211112234444443 24789999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+.........+ .+++.+||++|.|+
T Consensus 120 l~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 120 METRVVTADQGEALAKELG-------IPFIESSAKNDDNV 152 (170)
T ss_dssp CTTCCSCHHHHHHHHHHHT-------CCEEECBTTTTBSH
T ss_pred CCcCccCHHHHHHHHHHcC-------CeEEEEECCCCCCH
Confidence 9532111111111111122 26788999998887
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-16 Score=147.53 Aligned_cols=148 Identities=15% Similarity=0.188 Sum_probs=92.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +.... ..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~----------- 64 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDG-----------------KT----------- 64 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETT-----------------EE-----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECC-----------------EE-----------
Confidence 345799999999999999999999987532 2222222222211 11110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 65 ----~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n 129 (196)
T 3tkl_A 65 ----IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129 (196)
T ss_dssp ----EEEEEEEECCSGG-----------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ----EEEEEEECCCcHh-----------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2489999999643 34456677899999999999985221122234444443 34789999999
Q ss_pred CCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...... ......... ..+++.+||++|.|+
T Consensus 130 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 130 KCDLTTKKVVDYTTAKEFADSL-------GIPFLETSAKNATNV 166 (196)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHT-------TCCEEEECTTTCTTH
T ss_pred CcccccccccCHHHHHHHHHHc-------CCcEEEEeCCCCCCH
Confidence 999976432111 111111112 236788999999887
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=147.29 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=91.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEE--EEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+..++|+|+|.+|||||||+|+|++..+... ..+|.. .+. .+..+. . .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~-----------------~----~----- 73 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD---SRTTIGVEFSTRTVMLGT-----------------A----A----- 73 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS---CCCCSSEEEEEEEEEETT-----------------E----E-----
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEEEECC-----------------E----E-----
Confidence 3457999999999999999999999876422 112211 111 111100 0 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
..+.+|||||+.. +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 74 ------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv 136 (193)
T 2oil_A 74 ------VKAQIWDTAGLER-----------YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136 (193)
T ss_dssp ------EEEEEEEESCCCT-----------TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEE
T ss_pred ------EEEEEEeCCCchh-----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3489999999864 233456678999999999999852111222345555543 36889999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+....... ......... ...+++.+||++|.|+
T Consensus 137 ~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 137 GNKSDLSQAREVPTEEARMFAEN-------NGLLFLETSALDSTNV 175 (193)
T ss_dssp EECGGGGGGCCSCHHHHHHHHHH-------TTCEEEEECTTTCTTH
T ss_pred EECCCcccccccCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 9999997532111 111111111 1246788999999887
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=143.80 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=88.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|+|||||+|+|++..+.. ...+|..... ...... +.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~----------------~~-------------- 49 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE---SYIPTVEDTYRQVISCD----------------KS-------------- 49 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS---SCCCCSCEEEEEEEEET----------------TE--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCCccccEEEEEEEC----------------CE--------------
Confidence 4689999999999999999999977531 1222221111 100000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.+ .+.|+++|+|
T Consensus 50 -~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 50 -ICTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp -EEEEEEEECCSCSS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred -EEEEEEEECCCchh-----------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 02489999999764 455666778899999999999852111222334433332 3689999999
Q ss_pred CCCCCCHHHHHHH-HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRV-YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~-~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++... ........ ..+.+.+||++|.|+
T Consensus 118 K~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 154 (172)
T 2erx_A 118 KCDESPSREVQSSEAEALARTW-------KCAFMETSAKLNHNV 154 (172)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHH-------TCEEEECBTTTTBSH
T ss_pred ccccccccccCHHHHHHHHHHh-------CCeEEEecCCCCcCH
Confidence 9998754221111 11111111 236788999999887
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=146.41 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=92.1
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
..+...+|+|+|.+|+|||||+|+|++..+.. ...+.+..+.... +.... .
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~---------- 70 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTIGASFMTKTVPCGN-----------------E---------- 70 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCSSEEEEEEEEECSS-----------------S----------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCcceeEEEEEEEeCC-----------------E----------
Confidence 34456899999999999999999999987531 1222222111111 11000 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 71 -----~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv 134 (192)
T 2fg5_A 71 -----LHKFLIWDTAGQER-----------FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134 (192)
T ss_dssp -----EEEEEEEEECCSGG-----------GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred -----EEEEEEEcCCCchh-----------hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 03589999999653 344456678999999999999862222222344444443 37899999
Q ss_pred EcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+..+. .+........ ...+++.+||+++.|+
T Consensus 135 ~NK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 135 GNKCDLSDIREVPLKDAKEYAES-------IGAIVVETSAKNAINI 173 (192)
T ss_dssp EECGGGGGGCCSCHHHHHHHHHT-------TTCEEEECBTTTTBSH
T ss_pred EECcccccccccCHHHHHHHHHH-------cCCEEEEEeCCCCcCH
Confidence 999999742211 1111222211 1247889999998887
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=144.59 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=92.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEE-EeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAV-MYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i-~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+. ...+.++.+.+... ..+. ..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-----------------~~----------- 61 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDG-----------------EE----------- 61 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETT-----------------EE-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECC-----------------EE-----------
Confidence 34589999999999999999999998752 22222222222111 1100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+
T Consensus 62 ----~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 126 (206)
T 2bov_A 62 ----VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126 (206)
T ss_dssp ----EEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEE
T ss_pred ----EEEEEEcCCChhh-----------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 2488999999764 45566778899999999999985221112233333333 2478999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..++ .+......... ..+++.+||++|.|+
T Consensus 127 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 127 NKSDLEDKRQVSVEEAKNRAEQW-------NVNYVETSAKTRANV 164 (206)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHH-------TCEEEEECTTTCTTH
T ss_pred eccCccccccccHHHHHHHHHHh-------CCeEEEEeCCCCCCH
Confidence 99999753211 11111111111 236788999999987
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=143.63 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=91.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEE--EEeCCCccccCC------CCcccccccccccccc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPF------SPLDKFGKFGNSFLNR 125 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~--i~~~~~~~~i~g------~~~~~~~~~g~~~~~~ 125 (551)
..++|+|+|.+|||||||+|+|++..+. ....+|... +.. +...... .... ..+..+...+......
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH---ENTNTTIGASFCTYVVNLNDIN-IKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC---CCcCccccceeEEEEEEecCcc-cccccccccccccccccccccccccc
Confidence 4579999999999999999999998753 222233322 111 1111100 0000 0000000000000000
Q ss_pred eeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-CCCcE
Q psy11743 126 FQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-HDDKI 204 (551)
Q Consensus 126 ~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~~~~v 204 (551)
......+......+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pi 150 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQER-----------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYII 150 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGG-----------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred ccccccCccceeEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 011111111124689999999643 344566778999999999999862111222344444442 46899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|+||+|........+........ ...+++.+||++|.|+
T Consensus 151 ilv~NK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i 191 (208)
T 3clv_A 151 ILVANKIDKNKFQVDILEVQKYAQD-------NNLLFIQTSAKTGTNI 191 (208)
T ss_dssp EEEEECTTCC-CCSCHHHHHHHHHH-------TTCEEEEECTTTCTTH
T ss_pred EEEEECCCcccccCCHHHHHHHHHH-------cCCcEEEEecCCCCCH
Confidence 9999999932111111111222211 1237889999999887
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-16 Score=154.81 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=96.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|||||||+|+|+|.... +...|+.|.+......... +
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~----------------------~---------- 51 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYK----------------------G---------- 51 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEET----------------------T----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEEC----------------------C----------
Confidence 478999999999999999999997742 3344555544433221110 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+...... -......++ ..+|++++|+|+++ . .....+...+.+.+.|+++|+||+|+
T Consensus 52 -~~~~l~DtpG~~~~~~~~~-----~e~v~~~~~~~~~~d~ii~V~D~t~--~-~~~~~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 52 -YTINLIDLPGTYSLGYSSI-----DEKIARDYLLKGDADLVILVADSVN--P-EQSLYLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp -EEEEEEECCCCSSCCSSSH-----HHHHHHHHHHHSCCSEEEEEEETTS--C-HHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred -eEEEEEECCCcCccCCCCH-----HHHHHHHHHhhcCCCEEEEEeCCCc--h-hhHHHHHHHHHhcCCCEEEEEECcCC
Confidence 3589999999976322110 112334444 58999999999985 2 34445667777789999999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
................++ .+++.+||++|.|+
T Consensus 123 ~~~~~i~~~~~~l~~~lg-------~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 123 AKKTGMKIDRYELQKHLG-------IPVVFTSSVTGEGL 154 (258)
T ss_dssp HHHTTCCBCHHHHHHHHC-------SCEEECCTTTCTTH
T ss_pred CCccchHHHHHHHHHHcC-------CCEEEEEeeCCcCH
Confidence 543211100111122222 37889999999987
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-16 Score=142.74 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=91.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+|+|.+|+|||||+|+|++..+. ...+.++.+.... +.... .
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-----------------~------------ 64 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDG-----------------E------------ 64 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETT-----------------E------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECC-----------------E------------
Confidence 34579999999999999999999998752 2222222222211 11100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+
T Consensus 65 ---~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 130 (187)
T 2a9k_A 65 ---EVQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130 (187)
T ss_dssp ---EEEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred ---EEEEEEEECCCCcc-----------cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 02488999999764 45566778899999999999985211112223333332 3478999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..+. .+......... ..+++.+||+++.|+
T Consensus 131 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 131 NKSDLEDKRQVSVEEAKNRAEQW-------NVNYVETSAKTRANV 168 (187)
T ss_dssp ECGGGGGGCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred ECccccccCccCHHHHHHHHHHc-------CCeEEEeCCCCCCCH
Confidence 99998653211 11111111111 236788999999887
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=141.70 Aligned_cols=146 Identities=15% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. .. .||.... ..+. ++ +
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~--~~t~~~~~~~~~------------------~~-----~-------- 59 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HT--SPTIGSNVEEIV------------------IN-----N-------- 59 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EE--ECCSCSSCEEEE------------------ET-----T--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cC--cCCCccceEEEE------------------EC-----C--------
Confidence 3578999999999999999999987652 11 1221100 0000 00 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.|+++|+|
T Consensus 60 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (187)
T 1zj6_A 60 ---TRFLMWDIGGQES-----------LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 125 (187)
T ss_dssp ---EEEEEEECCC---------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEE
Confidence 4589999999864 233345667899999999999863222333444444433 5789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ ....+ .+..+ .....+++.+||++|.|+
T Consensus 126 K~Dl~~~~~~~~-i~~~~-~~~~~-~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 126 KQDVKECMTVAE-ISQFL-KLTSI-KDHQWHIQACCALTGEGL 165 (187)
T ss_dssp CTTSTTCCCHHH-HHHHH-TGGGC-CSSCEEEEECBTTTTBTH
T ss_pred CCCCcCCCCHHH-HHHHh-Chhhh-cCCCcEEEEccCCCCcCH
Confidence 999976321111 11111 11111 223347889999999887
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-16 Score=141.25 Aligned_cols=147 Identities=13% Similarity=0.180 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|+|||||+|+|++..+.... .+..+.+.. ..+.... . .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~----~-------- 54 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDD-----------------T----T-------- 54 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETT-----------------E----E--------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECC-----------------E----E--------
Confidence 3578999999999999999999998753211 111111111 1111100 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||
T Consensus 55 ---~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK 120 (170)
T 1r2q_A 55 ---VKFEIWDTAGQER-----------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120 (170)
T ss_dssp ---EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ---EEEEEEeCCCcHH-----------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3489999999653 34456677899999999999985211122234444443 236789999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..... +........ ...+.+.+||++|.|+
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 121 ADLANKRAVDFQEAQSYADD-------NSLLFMETSAKTSMNV 156 (170)
T ss_dssp GGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTCTTH
T ss_pred ccCccccccCHHHHHHHHHH-------cCCeEEEEeCCCCCCH
Confidence 9986432110 111111111 1246788999999887
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=141.33 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=90.6
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....++|+++|.+|||||||+|+|++........+...++.....-..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 64 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS-------------------------------- 64 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEEC--------------------------------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeecc--------------------------------
Confidence 346789999999999999999999886432111111112111111000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHH---HHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVL---EWFAERVDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKI 204 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~---~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~v 204 (551)
..-...+.+|||||... +.... ..++..+|++++|+|+++ ........+..++. ..+.|+
T Consensus 65 ~~~~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~l~~~~~~~~~~pi 132 (196)
T 3llu_A 65 NSSFVNFQIWDFPGQMD-----------FFDPTFDYEMIFRGTGALIYVIDAQD-DYMEALTRLHITVSKAYKVNPDMNF 132 (196)
T ss_dssp CTTSCCEEEEECCSSCC-----------TTCTTCCHHHHHHTCSEEEEEEETTS-CCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CCCeeEEEEEECCCCHH-----------HHhhhhhcccccccCCEEEEEEECCC-chHHHHHHHHHHHHHHHhcCCCCcE
Confidence 00004589999999764 22222 566789999999999996 43344444444443 347899
Q ss_pred EEEEcCCCCCCHHHHH-------HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQLM-------RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~~-------~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|+||+|+.+.+... ......+..... .....+.+.+||++ .|+
T Consensus 133 ilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~e~Sa~~-~~v 184 (196)
T 3llu_A 133 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL--EKLHLSFYLTSIYD-HSI 184 (196)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC--TTSCEEEEEECTTS-THH
T ss_pred EEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh--hcCCcceEEEEech-hhH
Confidence 9999999998753221 111111111110 12345778899988 776
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-16 Score=147.87 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=88.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +..+ |.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~------------ 67 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDIN-----------------GK------------ 67 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEET-----------------TE------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEEC-----------------CE------------
Confidence 456899999999999999999999987531 2222222222111 1110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 68 ---~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 133 (213)
T 3cph_A 68 ---KVKLQLWDTAGQER-----------FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133 (213)
T ss_dssp ---EEEEEEECCTTGGG-----------GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred ---EEEEEEEeCCCcHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 02489999999653 23334567789999999999985211112234444443 23689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+.........+ .+++.+||++|.|+
T Consensus 134 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 134 KSDMETRVVTADQGEALAKELG-------IPFIESSAKNDDNV 169 (213)
T ss_dssp CTTCSSCCSCHHHHHHHHHHHT-------CCEEECBTTTTBSS
T ss_pred CCCCcccccCHHHHHHHHHHcC-------CEEEEEeCCCCCCH
Confidence 9999532111111111111122 26788999999988
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-16 Score=143.63 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=89.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|.+|||||||+|+|++..+.......+.+.. .+.. .+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~---~~~~-----------------------~~-------- 64 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE---EIVI-----------------------NN-------- 64 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE---EEEE-----------------------TT--------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE---EEEE-----------------------CC--------
Confidence 4568999999999999999999999875211111111110 0000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.|+++|+|
T Consensus 65 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 130 (181)
T 2h17_A 65 ---TRFLMWDIGGQES-----------LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 130 (181)
T ss_dssp ---EEEEEEEESSSGG-----------GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEE
Confidence 3589999999854 222334556899999999999863222233344444332 5789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+ +.... .+... .....+++.+||++|.|+
T Consensus 131 K~Dl~~~~~~~~-i~~~~-~~~~~-~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 131 KQDVKECMTVAE-ISQFL-KLTSI-KDHQWHIQACCALTGEGL 170 (181)
T ss_dssp CTTSTTCCCHHH-HHHHT-TGGGC-CSSCEEEEECBTTTTBTH
T ss_pred CCCcccCCCHHH-HHHHh-Ccccc-cCCceEEEEccCCCCcCH
Confidence 999976311111 11111 11111 222347889999999887
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-15 Score=154.49 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=102.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCC-Cccc-cCCCCcccccccccccccceeEEec
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE-REGS-VPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~-~~~~-i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
+..++|+++|.+|+|||||+|+|++...... .+...... ...... .... ......... ..+..
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~---------- 70 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK---LGYAETNI-GVCESCKKPEAYVTEPSCKSC-GSDDE---------- 70 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS---SEEEEEEE-EECTTSCTTTTEESSSCCGGG-TCCSC----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc---cCccccce-eeccccccccceecccccccc-ccccc----------
Confidence 3568999999999999999999998653210 00000000 000000 0000 000000000 00000
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCC-CcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHD-DKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~-~~vilVlN 209 (551)
......+.+|||||+.+ +...+...+..+|++++|+|+.+ +. ..+..+++..+...+ +|+++|+|
T Consensus 71 -~~~~~~~~iiDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~-~~~~~qt~~~~~~~~~~~~~~iivviN 137 (403)
T 3sjy_A 71 -PKFLRRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANE-PFPQPQTREHFVALGIIGVKNLIIVQN 137 (403)
T ss_dssp -CEEEEEEEEEECCCCGG-----------GHHHHHHHHTTCSEEEEEEETTS-CSSCHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred -ccccceEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCCcHHHHHHHHHHHHcCCCCEEEEEE
Confidence 00014689999999753 67778888899999999999997 54 667677776666544 58999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.++..+.+......+.. ......+++++||++|.|+
T Consensus 138 K~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~~ii~vSA~~g~gi 179 (403)
T 3sjy_A 138 KVDVVSKEEALSQYRQIKQFTKG-TWAENVPIIPVSALHKINI 179 (403)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTT-STTTTCCEEECBTTTTBSH
T ss_pred CccccchHHHHHHHHHHHHHHHh-hCCCCCEEEEEECCCCcCh
Confidence 99999876544333322211211 1233568999999999887
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-16 Score=142.18 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=89.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc--ceEEE-EEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT--DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt--~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|.+|||||||+|+|++..+. ....+|. +.... +..+. .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~----------- 52 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT---KDYKKTIGVDFLERQIQVND-----------------E----------- 52 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC---CCSSCCCSSSEEEEEEEETT-----------------E-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCceEEEEEEEEEEECC-----------------E-----------
Confidence 3578999999999999999999998753 2222232 21111 10000 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 53 ----~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~n 117 (168)
T 1z2a_A 53 ----DVRLMLWDTAGQEE-----------FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQN 117 (168)
T ss_dssp ----EEEEEEECCTTGGG-----------TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEE
T ss_pred ----EEEEEEEcCCCcHh-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 03489999999653 223345667899999999999852211222334443332 4789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+. .+......... ..+.+.+||+++.|+
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 118 KIDLLDDSCIKNEEAEGLAKRL-------KLRFYRTSVKEDLNV 154 (168)
T ss_dssp CGGGGGGCSSCHHHHHHHHHHH-------TCEEEECBTTTTBSS
T ss_pred CcccCcccccCHHHHHHHHHHc-------CCeEEEEecCCCCCH
Confidence 9998753211 11111121112 236788999999888
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-16 Score=143.70 Aligned_cols=146 Identities=21% Similarity=0.255 Sum_probs=89.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+|+|.+|+|||||+|+|++..+.. ...+|.. .......-+ +.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~----------------~~------------ 61 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN---TYQATIGIDFLSKTMYLE----------------DR------------ 61 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS---SCCCCCSEEEEEEEEEET----------------TE------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeeEEEEEEEEEC----------------Ce------------
Confidence 44789999999999999999999887532 2222322 211111000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 62 ---~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 127 (179)
T 2y8e_A 62 ---TVRLQLWDTAGQER-----------FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGN 127 (179)
T ss_dssp ---EEEEEEEEECCSGG-----------GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ---EEEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 02489999999653 34445567789999999999985211122233443333 34789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+.. +......... ..+++.+||++|.|+
T Consensus 128 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 128 KTDLSDKRQVSTEEGERKAKEL-------NVMFIETSAKAGYNV 164 (179)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHH-------TCEEEEEBTTTTBSH
T ss_pred CCcccccCcCCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 99997532211 1111111111 236788999998887
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-16 Score=147.91 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=88.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +..+ +.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~-----------------~~------------ 73 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELR-----------------GK------------ 73 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEET-----------------TE------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEEC-----------------Ce------------
Confidence 445789999999999999999999887531 1122122222111 1100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 74 ---~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~N 139 (192)
T 2il1_A 74 ---KIRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139 (192)
T ss_dssp ---EEEEEEEEECCSGG-----------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ---EEEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 02489999999643 55667778899999999999985211111233334333 34789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++.......+.. .....+.+.+||++|.|+
T Consensus 140 K~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 140 KLDCETDREITRQQGEKFAQ-----QITGMRFCEASAKDNFNV 177 (192)
T ss_dssp CGGGGGGCCSCHHHHHHHHH-----TSTTCEEEECBTTTTBSH
T ss_pred CcccccccccCHHHHHHHHH-----hcCCCeEEEEeCCCCCCH
Confidence 99997532211111111111 112347788999999887
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-16 Score=141.39 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=89.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|+|||||+|+|++..+.. ...+.++.+.... +..+. . .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~----~--------- 51 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINE-----------------H----T--------- 51 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETT-----------------E----E---------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECC-----------------E----E---------
Confidence 3689999999999999999999987532 1222222222111 11100 0 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+||+
T Consensus 52 --~~~~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 118 (170)
T 1ek0_A 52 --VKFEIWDTAGQER-----------FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKI 118 (170)
T ss_dssp --EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred --EEEEEEECCCChh-----------hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 3489999999653 34456677899999999999985211222234444443 2478999999999
Q ss_pred CCCCH---HHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDH---QQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~---~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+. .++. +......... ..+++.+||++|.|+
T Consensus 119 Dl~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 119 DXLQEGGERKVAREEGEKLAEEK-------GLLFFETSAKTGENV 156 (170)
T ss_dssp GGGGSSCCCCSCHHHHHHHHHHH-------TCEEEECCTTTCTTH
T ss_pred CccccccccCCCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 99743 1111 1111111111 236788999999887
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-16 Score=144.06 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=91.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|||||||+|+|++...... ...+|......... ++ +
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~t~~~~~~~~~-----------------~~-----~-------- 66 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ--NILPTIGFSIEKFK-----------------SS-----S-------- 66 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS--SCCCCSSEEEEEEE-----------------CS-----S--------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC--CcCCccceeEEEEE-----------------EC-----C--------
Confidence 4568999999999999999999998873212 23334432211100 00 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH-HhC-----CCCcEEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA-LRG-----HDDKIRIV 207 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~-l~~-----~~~~vilV 207 (551)
..+.+|||||... +......++.++|++++|+|+++.........++.. +.. .+.|+++|
T Consensus 67 ---~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv 132 (190)
T 2h57_A 67 ---LSFTVFDMSGQGR-----------YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132 (190)
T ss_dssp ---CEEEEEEECCSTT-----------TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEE
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEE
Confidence 3589999999765 223334567899999999999852111222233333 333 47899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.......+ ..... .+..+ .....+++.+||++|.|+
T Consensus 133 ~nK~Dl~~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 133 ANKMDLRDAVTSVK-VSQLL-CLENI-KDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EECTTSTTCCCHHH-HHHHH-TGGGC-CSSCEEEEECBTTTTBTH
T ss_pred EeCcCcccCCCHHH-HHHHh-Chhhc-cCCceEEEEccCCCCcCH
Confidence 99999975422111 11111 11111 123457889999999887
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-16 Score=171.52 Aligned_cols=152 Identities=19% Similarity=0.272 Sum_probs=104.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcccc----CCCC-----cccc---------
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSV----PFSP-----LDKF--------- 115 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i----~g~~-----~~~~--------- 115 (551)
...++|+|+|.+|+|||||+|+|+|.++. ++++.|+|..++.+.+++..... .|.. +..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~--~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLL--PSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCS--CCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 35689999999999999999999999864 55667788777777776532110 1100 0000
Q ss_pred -----ccccc--ccccceeEEecCCCCc-cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC
Q psy11743 116 -----GKFGN--SFLNRFQCSLVNSPVL-KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS 187 (551)
Q Consensus 116 -----~~~g~--~~~~~~~~~~~~~~~l-~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~ 187 (551)
...+. ...-....++.|.+++ ..+.||||||+.+.. .....+..++..+|++|+|+|+.+ +.+
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--------~~~~~~~~~i~~aD~vL~Vvda~~-~~s 215 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--------ARNELSLGYVNNCHAILFVMRASQ-PCT 215 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--------TCHHHHTHHHHSSSEEEEEEETTS-TTC
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--------hHHHHHHHHHHhCCEEEEEEeCCC-ccc
Confidence 00000 0011245567777777 589999999987521 134567778899999999999986 677
Q ss_pred hHHHHHHH-HHhCCCCcEEEEEcCCCCCCH
Q psy11743 188 DEFRRSIE-ALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 188 ~~~~~~l~-~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+...+. .+...+.|+++|+||+|+...
T Consensus 216 ~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 216 LGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 76665553 556668899999999999754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-16 Score=147.25 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=87.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+. ....+..+.+.... +.... .
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~------------ 56 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEING-----------------E------------ 56 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETT-----------------E------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECC-----------------E------------
Confidence 34589999999999999999999998753 12222222222111 11110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 57 ---~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK 122 (181)
T 3tw8_B 57 ---KVKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNK 122 (181)
T ss_dssp ---EEEEEEEEETTGGG-----------CSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEEC
T ss_pred ---EEEEEEEcCCCchh-----------hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 02489999999653 122233456899999999999862111122334444432 35899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..... .......... ..+++.+||++|.|+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 123 NDDPERKVVETEDAYKFAGQM-------GIQLFETSAKENVNV 158 (181)
T ss_dssp TTCGGGCCSCHHHHHHHHHHH-------TCCEEECBTTTTBSH
T ss_pred CCCchhcccCHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 9986532111 1111111111 236788999999887
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-15 Score=156.70 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=72.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC-------hHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-------DEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~-------~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+.+ +.. .+..+.+..+...+.| +++|+
T Consensus 95 ~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~-g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvvi 162 (439)
T 3j2k_7 95 KHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARK-GEFETGFEKGGQTREHAMLAKTAGVKHLIVLI 162 (439)
T ss_pred eEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CccccccCCCchHHHHHHHHHHcCCCeEEEEe
Confidence 4699999999864 67777788899999999999996 443 4666777777777888 99999
Q ss_pred cCCCCCCH---H----HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDH---Q----QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~---~----~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+... + +..+.+...+..++.- .....+++++||++|.|+
T Consensus 163 NK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~-~~~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 163 NKMDDPTVNWSNERYEECKEKLVPFLKKVGFN-PKKDIHFMPCSGLTGANL 212 (439)
T ss_pred ecCCCcccchHHHHHHHHHHHHHHHHHHhccc-ccCCeeEEEeeccCCccc
Confidence 99999642 1 1112222223233321 012457899999999998
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=149.20 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=88.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC------CCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP------EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~------~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
.++|+|+|.+|+|||||+|+|++.+...... + .+|+........ +...|
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~--------------~~~~~---------- 62 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVL--------------IKEGG---------- 62 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEE--------------ECC------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC-CCcccccCCceEEEEEEEE--------------EecCC----------
Confidence 4789999999999999999999988643221 1 122211110000 00000
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHH-------HHHHhc-------------cCEEEEEEeCCCCCCChH
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVL-------EWFAER-------------VDRIILLFDAHKLDISDE 189 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~-------~~~~~~-------------aD~il~VvDa~~~~~~~~ 189 (551)
....+.+|||||+.+.... ...+.... ..++.. +|++++++++...++...
T Consensus 63 -----~~~~l~liDTpG~~d~~~~----~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~ 133 (274)
T 3t5d_A 63 -----VQLLLTIVDTPGFGDAVDN----SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 133 (274)
T ss_dssp -----CCEEEEEEECCCCSCCSCC----TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHH
T ss_pred -----eEEEEEEEECCCccccccc----hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHH
Confidence 0025899999999653221 11122222 334433 789999998775578888
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 190 FRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 190 ~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+..+++.+.. ++|+++|+||+|+....+...........+.. ...+++.+||.++.++
T Consensus 134 d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~----~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 134 DIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQE----HKIKIYEFPETDDEEE 191 (274)
T ss_dssp HHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHH----TTCCCCCC--------
T ss_pred HHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHH----cCCeEEcCCCCCChhH
Confidence 8888988887 89999999999999876554322221111111 1224555788877766
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=143.61 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=88.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+|+|++..+.. ...+|..... ...... +.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~----------------~~------------- 54 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD---TYIPTIEDTYRQVISCD----------------KS------------- 54 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC---TTSCCCCEEEEEEEEET----------------TE-------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC---cccCccccceeEEEEEC----------------CE-------------
Confidence 45799999999999999999999977532 1222222111 100000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hC--CCCcEEEEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RG--HDDKIRIVL 208 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~--~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+ .. .+.|+++|+
T Consensus 55 --~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~ 121 (199)
T 2gf0_A 55 --VCTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121 (199)
T ss_dssp --EEEEEEEECCGGGS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEE
T ss_pred --EEEEEEEeCCChHH-----------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 03489999999654 4556667789999999999998521111112233323 22 367999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.....+......... ..+++.+||++|.|+
T Consensus 122 nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 122 NKCDETQREVDTREAQAVAQEW-------KCAFMETSAKMNYNV 158 (199)
T ss_dssp ECTTCSSCSSCHHHHHHHHHHH-------TCEEEECBTTTTBSH
T ss_pred ECccCCccccCHHHHHHHHHHh-------CCeEEEEecCCCCCH
Confidence 9999975321111111111111 136788999999887
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-16 Score=140.97 Aligned_cols=148 Identities=19% Similarity=0.184 Sum_probs=87.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|++|||||||+|+|++.... ....|+.|.+....... ++ +
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~~-----~---------- 49 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFE-----------------YN-----G---------- 49 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEE-----------------ET-----T----------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEE-----------------EC-----C----------
Confidence 468999999999999999999987642 22222223222211100 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+..-.... ........++ ..+|++++|+|+.+ . .....++..+.+.+.|+++|+||+|+
T Consensus 50 -~~l~i~Dt~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~v~D~~~--~-~~~~~~~~~~~~~~~p~ilv~nK~Dl 120 (165)
T 2wji_A 50 -EKFKVVDLPGVYSLTANS-----IDEIIARDYIINEKPDLVVNIVDATA--L-ERNLYLTLQLMEMGANLLLALNKMDL 120 (165)
T ss_dssp -EEEEEEECCCCSCSSSSS-----HHHHHHHHHHHHHCCSEEEEEEETTC--H-HHHHHHHHHHHHTTCCEEEEEECHHH
T ss_pred -cEEEEEECCCcccCCCcc-----hhHHHHHHHHhcCCCCEEEEEecCCc--h-hHhHHHHHHHHhcCCCEEEEEEchHh
Confidence 348999999987522110 0122333344 48999999999974 1 23345566666678999999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
................++ .+.+.+||++|.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~-------~~~~~~SA~~~~~v 152 (165)
T 2wji_A 121 AKSLGIEIDVDKLEKILG-------VKVVPLSAAKKMGI 152 (165)
T ss_dssp HHHTTCCCCHHHHHHHHT-------SCEEECBGGGTBSH
T ss_pred ccccChhhHHHHHHHHhC-------CCEEEEEcCCCCCH
Confidence 532111000111111122 35788999999887
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-16 Score=142.63 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=91.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++... . ...||..... .+..+ +
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~--~~~~t~~~~~~~~~~~-----------------------~-------- 61 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--D--TISPTLGFNIKTLEHR-----------------------G-------- 61 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--S--SCCCCSSEEEEEEEET-----------------------T--------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--C--cccccCccceEEEEEC-----------------------C--------
Confidence 468999999999999999999998772 1 2223333111 11110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 62 ---~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (186)
T 1ksh_A 62 ---FKLNIWDVGGQKS-----------LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127 (186)
T ss_dssp ---EEEEEEEECCSHH-----------HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHh-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEe
Confidence 4589999999853 233344567899999999999862222222334443332 4789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+. ...+ .+... .....+.+.+||++|.|+
T Consensus 128 K~Dl~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 128 KQDLPGALSCNAI-QEAL-ELDSI-RSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp CTTSTTCCCHHHH-HHHT-TGGGC-CSSCEEEEECCTTTCTTH
T ss_pred CccCCCCCCHHHH-HHHh-Chhhc-cCCceEEEEeeCCCCCCH
Confidence 9999764222111 1111 11111 223457889999999887
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-16 Score=154.25 Aligned_cols=147 Identities=23% Similarity=0.246 Sum_probs=94.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|||||||+|+|+|... .+...|+.|.+....... + +
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~-----------------~------~---------- 48 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVK-----------------K------N---------- 48 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECT-----------------T------C----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEe-----------------c------C----------
Confidence 46899999999999999999999763 244445555554332110 0 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHh--ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+-.... ........++. .+|++++|+|+++. .....+...+.+.+.|+++|+||+|+
T Consensus 49 -~~l~l~DtpG~~~~~~~~-----~~e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~~~~~~l~~~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 49 -KDLEIQDLPGIYSMSPYS-----PEAKVARDYLLSQRADSILNVVDATNL---ERNLYLTTQLIETGIPVTIALNMIDV 119 (272)
T ss_dssp -TTEEEEECCCCSCSSCSS-----HHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTCSCEEEEEECHHH
T ss_pred -CeEEEEECCCcCccCCCC-----hHHHHHHHHHhcCCCCEEEEEecCCch---HhHHHHHHHHHhcCCCEEEEEEChhh
Confidence 459999999987632110 01223344443 69999999999851 33445556666678999999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
............+...++ .+++.+||++|.|+
T Consensus 120 ~~~~~~~~~~~~l~~~lg-------~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 120 LDGQGKKINVDKLSYHLG-------VPVVATSALKQTGV 151 (272)
T ss_dssp HHHTTCCCCHHHHHHHHT-------SCEEECBTTTTBSH
T ss_pred CCcCCcHHHHHHHHHHcC-------CCEEEEEccCCCCH
Confidence 543211000111111222 36889999999887
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=141.21 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=74.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++..+. ...+ +++.....+..+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~-~~~~~~~~~~~~~~------------------------------- 51 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQT-SITDSSAIYKVNNN------------------------------- 51 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCC-CCSCEEEEEECSST-------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccC-CcceeeEEEEecCC-------------------------------
Confidence 4589999999999999999999998753 2222 23322222222110
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHH-HHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH----Hh-----CCCCcE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTG-VLEWFAERVDRIILLFDAHKLDISDEFRRSIEA----LR-----GHDDKI 204 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~----l~-----~~~~~v 204 (551)
-...+.+|||||... +.. ....++..+|++++|+|+.+ ........... +. ..+.|+
T Consensus 52 ~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pi 118 (214)
T 2fh5_B 52 RGNSLTLIDLPGHES-----------LRFQLLDRFKSSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSL 118 (214)
T ss_dssp TCCEEEEEECCCCHH-----------HHHHHHHHHGGGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEE
T ss_pred CccEEEEEECCCChh-----------HHHHHHHHHHhhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCE
Confidence 003489999999853 444 45667899999999999974 22222222222 21 346899
Q ss_pred EEEEcCCCCCCH
Q psy11743 205 RIVLNKADMVDH 216 (551)
Q Consensus 205 ilVlNK~Dl~~~ 216 (551)
++|+||+|+...
T Consensus 119 ilv~nK~Dl~~~ 130 (214)
T 2fh5_B 119 LIACNKQDIAMA 130 (214)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECCCCCCc
Confidence 999999999754
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=162.05 Aligned_cols=149 Identities=23% Similarity=0.275 Sum_probs=102.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+|+|.+|||||||+|+|++.+.+.+...|++|++.......- + +
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-----------------~-----g---------- 290 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-----------------R-----G---------- 290 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-----------------T-----T----------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-----------------C-----C----------
Confidence 3789999999999999999999998766777777776654321110 0 0
Q ss_pred ccCeEEEeCCCCC-CCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 136 LKGISIVDTPGIL-SGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 136 l~~~~lIDTPGi~-~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+. ... +.++ .. -.+....++..+|++|+|+|+++ +.+.++.++++.+ .++|+++|+||+|+.
T Consensus 291 -~~~~l~DTaG~~~~~~-~~ve-~~-gi~~~~~~~~~aD~vl~VvD~s~-~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 291 -ILFRIVDTAGVRSETN-DLVE-RL-GIERTLQEIEKADIVLFVLDASS-PLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp -EEEEEEESSCCCSSCC-TTCC-CC-CHHHHHHHHHHCSEEEEEEETTS-CCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred -eEEEEEECCCccccch-hhHH-HH-HHHHHHHHhhcccEEEEEecCCC-CCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 348999999997 432 1111 11 12345667899999999999986 5666666776666 378999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.....+ +... .+ ...+++.+||++|.|+
T Consensus 364 ~~~~~~~-~~~~---~~-----~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 364 EKINEEE-IKNK---LG-----TDRHMVKISALKGEGL 392 (482)
T ss_dssp CCCCHHH-HHHH---HT-----CSTTEEEEEGGGTCCH
T ss_pred cccCHHH-HHHH---hc-----CCCcEEEEECCCCCCH
Confidence 5311111 1111 11 1246789999999988
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=140.28 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=91.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+|+|++..+... .||..... .+.. + +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~----~~t~g~~~~~~~~------------------~-----~-------- 59 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHI----TPTQGFNIKSVQS------------------Q-----G-------- 59 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEE----EEETTEEEEEEEE------------------T-----T--------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcc----cCcCCeEEEEEEE------------------C-----C--------
Confidence 458999999999999999999998764211 11111000 0000 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 60 ---~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (181)
T 1fzq_A 60 ---FKLNVWDIGGQRK-----------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125 (181)
T ss_dssp ---EEEEEEECSSCGG-----------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred ---EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 3589999999753 45566778899999999999985222222233443332 24789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+ ....+ .+... .....+.+.+||++|.|+
T Consensus 126 K~Dl~~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 126 KQDLLTAAPASE-IAEGL-NLHTI-RDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp CTTSTTCCCHHH-HHHHT-TGGGC-CSSCEEEEECCTTTCTTH
T ss_pred CcCcccCCCHHH-HHHHh-Cchhc-cCCceEEEEccCCCCCCH
Confidence 999976422211 11111 11111 222346789999999987
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=138.46 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=90.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|++..+. ....|+.|.+.... ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~-~~------------------------------------ 43 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEI-EW------------------------------------ 43 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEE-EE------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEE-ec------------------------------------
Confidence 57999999999999999999998742 23333333222211 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH----HhccCEEEEEEeCCCC----------CCChHHHHHHHHHhCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF----AERVDRIILLFDAHKL----------DISDEFRRSIEALRGHDD 202 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~----~~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~~~~ 202 (551)
..+.++||||+.............+......+ ...+++++.|+|+... +....+.++...+...+.
T Consensus 44 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 44 KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 14899999997542211111111233333333 4456788888887631 111122234455556689
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 203 KIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 203 ~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+++|+||+|+..... +........++........+++.+||++|.|+
T Consensus 124 piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 171 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNVQ--EVINFLAEKFEVPLSEIDKVFIPISAKFGDNI 171 (190)
T ss_dssp CEEEEEECGGGCSCHH--HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTH
T ss_pred ceEEEeehHhccCcHH--HHHHHHHHHhhhhhhccCCcEEEEecCCCCCH
Confidence 9999999999987531 11222222233200000235788999999987
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-16 Score=144.68 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=88.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+|+|.+|||||||+|+|++..+.... .+..+.+... .+..+. .
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~-----------------~------------ 68 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVNIDG-----------------K------------ 68 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETT-----------------E------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECC-----------------E------------
Confidence 44579999999999999999999998753211 1111111111 111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 69 ---~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n 134 (191)
T 2a5j_A 69 ---QIKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134 (191)
T ss_dssp ---EEEEEEECCTTGGG-----------TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ---EEEEEEEECCCchh-----------hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 02489999999653 22334566789999999999985221122234444443 24789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...+ .+......... ..+++.+||+++.|+
T Consensus 135 K~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 135 KSDLESRRDVKREEGEAFAREH-------GLIFMETSAKTACNV 171 (191)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHH-------TCEEEEECTTTCTTH
T ss_pred CcccCCccccCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 9999643211 01111111111 236788999999887
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-16 Score=146.47 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=93.4
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
+.+..++|+|+|.+|||||||+|+|++..+... ..+..+.+......... +.
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~----------------~~----------- 70 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-FVSTVGIDFKVKTVYRH----------------EK----------- 70 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCC-EEEEETTTEEEEEEEET----------------TT-----------
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-cCCCeeeEEEEEEEEEC----------------CE-----------
Confidence 345668999999999999999999999875321 11111111111110000 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+
T Consensus 71 ----~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 135 (191)
T 3dz8_A 71 ----RVKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135 (191)
T ss_dssp ----TEEEEEECHHHHHH-----------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ----EEEEEEEeCCChHH-----------HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 03489999999532 566677888999999999999852222223445555543 578999999
Q ss_pred cCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+....... +......... ..+.+.+||++|.|+
T Consensus 136 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 136 NKCDMEEERVVPTEKGQLLAEQL-------GFDFFEASAKENISV 173 (191)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHH-------TCEEEECBTTTTBSH
T ss_pred ECCCCccccccCHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 999986432111 1111111112 236788999999887
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=154.02 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhhcccchhhhccCCccCCCCCCcc-------ccCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC
Q psy11743 17 ETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDA-------DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE 89 (551)
Q Consensus 17 ~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~-------~~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~ 89 (551)
+........+|...+..+.+...+....++..... .....++|+|+|.+|||||||+|+|++..+. . ..
T Consensus 119 ~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~--~~ 194 (329)
T 3o47_A 119 EKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV--T--TI 194 (329)
T ss_dssp HHHHSHHHHHHHHHHHHHHTTCCCCSCC-----CCCCC------CCSEEEEEEESTTSSHHHHHHHTCSSCCE--E--EE
T ss_pred ccccchHHHHHhhhccccccCCccccccccccccCCCCcccccccCcceEEEECCCCccHHHHHHHHhCCCCC--C--cc
Confidence 45556677788888777776666555444432211 0123458999999999999999999987742 1 12
Q ss_pred CccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH
Q psy11743 90 PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA 169 (551)
Q Consensus 90 ~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~ 169 (551)
||.+........ .+ ..+.||||||... +......++
T Consensus 195 pT~~~~~~~~~~----------------------~~-----------~~l~i~Dt~G~~~-----------~~~~~~~~~ 230 (329)
T 3o47_A 195 PTIGFNVETVEY----------------------KN-----------ISFTVWDVGGQDK-----------IRPLWRHYF 230 (329)
T ss_dssp EETTEEEEEEEE----------------------TT-----------EEEEEEECC----------------CCSHHHHH
T ss_pred cccceEEEEEec----------------------Cc-----------EEEEEEECCCCHh-----------HHHHHHHHh
Confidence 343332211110 00 3489999999653 334456678
Q ss_pred hccCEEEEEEeCCCCCCChHHH-HHHHHHhC---CCCcEEEEEcCCCCCCHHHHHHHHHHHHHHccc-ccCCCCceEEEe
Q psy11743 170 ERVDRIILLFDAHKLDISDEFR-RSIEALRG---HDDKIRIVLNKADMVDHQQLMRVYGALMWSLGK-VLQTPEVARVYI 244 (551)
Q Consensus 170 ~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~---~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~-l~~~~~~~~v~i 244 (551)
..+|++|+|+|+.+........ .+...+.. .+.|+++|+||+|+.+.....+. ... ++. .......+++.+
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i-~~~---~~~~~~~~~~~~~~~v 306 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEI-TDK---LGLHSLRHRNWYIQAT 306 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHH-HHH---HTCTTCCSSCEEEEEC
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHH-HHH---hchhhhhcCCCEEEEE
Confidence 8999999999998522222222 33334433 37899999999999864322221 111 222 112345578999
Q ss_pred cccCCCCC
Q psy11743 245 GSFWDQPL 252 (551)
Q Consensus 245 Sa~~g~~~ 252 (551)
||++|.|+
T Consensus 307 SAk~g~gi 314 (329)
T 3o47_A 307 CATSGDGL 314 (329)
T ss_dssp BTTTTBTH
T ss_pred ECCCCcCH
Confidence 99999887
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=142.26 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=86.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+.. ...+.+..+.. ..+... +. .
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~-----------------~~----~------- 76 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVD-----------------GE----R------- 76 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEET-----------------TE----E-------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEEC-----------------CE----E-------
Confidence 456899999999999999999999987521 11111111111 011000 00 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 77 ----~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~N 141 (199)
T 2p5s_A 77 ----TVLQLWDTAGQER-----------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141 (199)
T ss_dssp ----EEEEEEECTTCTT-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEE
T ss_pred ----EEEEEEECCCCcc-----------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2489999999754 45567778899999999999985221122234444443 24789999999
Q ss_pred CCCCCCHHH------H-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQ------L-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~------~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+..... + .+......... ..+++.+||++|.|+
T Consensus 142 K~Dl~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 142 KADIRDTAATEGQKCVPGHFGEKLAMTY-------GALFCETSAKDGSNI 184 (199)
T ss_dssp CGGGHHHHHHTTCCCCCHHHHHHHHHHH-------TCEEEECCTTTCTTH
T ss_pred CcccccccccccccccCHHHHHHHHHHc-------CCeEEEeeCCCCCCH
Confidence 999863211 0 01111111111 236788999999887
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=139.62 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=88.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++..+. ....+|......... +. ++..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~-~~~~------------- 54 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLNKD--------------LE-VDGH------------- 54 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC---C----CCSEEEEEEE--------------EE-ETTE-------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEEE--------------EE-ECCE-------------
Confidence 3578999999999999999999998752 122222221110000 00 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---C----CCCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---G----HDDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~----~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. . .+.|+++|
T Consensus 55 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v 122 (177)
T 1wms_A 55 -FVTMQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122 (177)
T ss_dssp -EEEEEEEECCCCGG-----------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEE
T ss_pred -EEEEEEEeCCCchh-----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEE
Confidence 02489999999643 45556667889999999999985211111123333332 1 56899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+...+...+........ ....+++.+||++|.|+
T Consensus 123 ~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 123 GNKIDISERQVSTEEAQAWCRD------NGDYPYFETSAKDATNV 161 (177)
T ss_dssp EECTTCSSCSSCHHHHHHHHHH------TTCCCEEECCTTTCTTH
T ss_pred EECCcccccccCHHHHHHHHHh------cCCceEEEEeCCCCCCH
Confidence 9999997321111111111111 12346788999999887
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-16 Score=140.95 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=85.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-E-EEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-A-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|.+|+|||||+|+|++..+. ....+|... +. . +..+. .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~----------- 53 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFN---DKHITTLGASFLTKKLNIGG-----------------K----------- 53 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCC---SSCCCCCSCEEEEEEEESSS-----------------C-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC---cCCCCccceEEEEEEEEECC-----------------E-----------
Confidence 3578999999999999999999998753 122222221 11 1 11000 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+
T Consensus 54 ----~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 118 (170)
T 1z08_A 54 ----RVNLAIWDTAGQER-----------FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118 (170)
T ss_dssp ----EEEEEEEECCCC------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEE
T ss_pred ----EEEEEEEECCCcHh-----------hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 02488999999754 22233345679999999999985221122233444433 2468999999
Q ss_pred cCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+...+. +......... ..+.+.+||++|.|+
T Consensus 119 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 119 NKIDLEKERHVSIQEAESYAESV-------GAKHYHTSAKQNKGI 156 (170)
T ss_dssp ECGGGGGGCCSCHHHHHHHHHHT-------TCEEEEEBTTTTBSH
T ss_pred ECcccccccccCHHHHHHHHHHc-------CCeEEEecCCCCCCH
Confidence 999997532110 1111112111 236788999999887
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=139.05 Aligned_cols=146 Identities=13% Similarity=0.189 Sum_probs=88.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+|+|.+|||||||+|+|++..+. ....+|+ +........+ +..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~----------------~~~------------ 65 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV---DDYDPTIEDSYLKHTEID----------------NQW------------ 65 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC---SCCCTTCCEEEEEEEEET----------------TEE------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCCccceeEEEEEeC----------------CcE------------
Confidence 4579999999999999999999988652 2222232 2221111100 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+ ...+.|+++|+|
T Consensus 66 ---~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 131 (183)
T 3kkq_A 66 ---AILDVLDTAGQEE-----------FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131 (183)
T ss_dssp ---EEEEEEECCSCGG-----------GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred ---EEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 2367899999653 3334556778999999999998521111122333332 346789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEeccc-CCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSF-WDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~-~g~~~ 252 (551)
|+|+.+...+. +.........+ .+.+.+||+ ++.|+
T Consensus 132 K~Dl~~~~~v~~~~~~~~~~~~~-------~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 132 KVDLMHLRKVTRDQGKEMATKYN-------IPYIETSAKDPPLNV 169 (183)
T ss_dssp CTTCSTTCCSCHHHHHHHHHHHT-------CCEEEEBCSSSCBSH
T ss_pred CCCchhccCcCHHHHHHHHHHhC-------CeEEEeccCCCCCCH
Confidence 99987532111 11111111111 357889999 88887
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-16 Score=148.79 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=88.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++..+. ....+|+. .+.....-. +. .
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~----------------~~----~------- 71 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS---EGYDPTVENTYSKIVTLG----------------KD----E------- 71 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC---SCCCCCSEEEEEEEEC------------------------C-------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEEC----------------CE----E-------
Confidence 34579999999999999999999998863 22222322 221111100 00 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVl 208 (551)
..+.+|||||.... ......++..+|++++|+|+.+.........++..+.. .+.|+++|+
T Consensus 72 ----~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 136 (201)
T 3oes_A 72 ----FHLHLVDTAGQDEY-----------SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136 (201)
T ss_dssp ----EEEEEEEECCCCTT-----------CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEE
T ss_pred ----EEEEEEECCCccch-----------HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 34789999997652 12233456789999999999852222223445555543 368999999
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+...+.. ......... ..+++.+||++|.|+
T Consensus 137 nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 137 NKADLSPEREVQAVEGKKLAESW-------GATFMESSARENQLT 174 (201)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHH-------TCEEEECCTTCHHHH
T ss_pred ECccCccccccCHHHHHHHHHHh-------CCeEEEEeCCCCCCH
Confidence 9999875322111 111111111 236788999988776
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-16 Score=152.00 Aligned_cols=127 Identities=15% Similarity=0.191 Sum_probs=84.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC-CccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE-PTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~-~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++.........+. .|.+....... +.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~----------------------~~~------- 70 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS----------------------WGN------- 70 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE----------------------ETT-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE----------------------eCC-------
Confidence 346899999999999999999999988655445554 33333322111 111
Q ss_pred CCCccCeEEEeCCCCCCCccccccc-ccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDR-GYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRI 206 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~-~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vil 206 (551)
..+.||||||+.+.... ... ...+.+.+..++..+|++|+|+|+.. +......+...+.+. ..|+++
T Consensus 71 ----~~i~iiDTpG~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~ 143 (260)
T 2xtp_A 71 ----REIVIIDTPDMFSWKDH-CEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMGHTIV 143 (260)
T ss_dssp ----EEEEEEECCGGGGSSCC-CHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred ----CEEEEEECcCCCCCCCC-HHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhccEEE
Confidence 45899999998763221 110 01123444556789999999999984 666666666666543 568888
Q ss_pred EEc-CCCCCCH
Q psy11743 207 VLN-KADMVDH 216 (551)
Q Consensus 207 VlN-K~Dl~~~ 216 (551)
|+| |+|+...
T Consensus 144 vv~nK~Dl~~~ 154 (260)
T 2xtp_A 144 LFTHKEDLNGG 154 (260)
T ss_dssp EEECGGGGTTC
T ss_pred EEEcccccCCc
Confidence 888 9999853
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=140.49 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=88.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|||||||+|+|++..+.......+++. ..+..+ +
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~---~~~~~~-----------------------~--------- 66 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS---EELAIG-----------------------N--------- 66 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE---EEEEET-----------------------T---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe---EEEEEC-----------------------C---------
Confidence 35799999999999999999999987642221221111 111110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
..+.++||||.... ......++..+|++++|+|+++.........++..+.+ .+.|+++|+||
T Consensus 67 --~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (190)
T 1m2o_B 67 --IKFTTFDLGGHIQA-----------RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK 133 (190)
T ss_dssp --EEEEEEECCCSGGG-----------TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred --EEEEEEECCCCHHH-----------HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEEC
Confidence 34899999998641 12223446799999999999862222222344444332 57899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccc--------cCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKV--------LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ .... ++.. ......+.+.+||++|.|+
T Consensus 134 ~Dl~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 134 IDAPNAVSEAE-LRSA---LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp TTSTTCCCHHH-HHHH---TTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred CCCcCCCCHHH-HHHH---hCCccccccccccccceEEEEEeECCcCCCH
Confidence 99975211111 1111 2211 1223457889999999887
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-16 Score=141.68 Aligned_cols=150 Identities=13% Similarity=0.167 Sum_probs=83.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++..+.. ...+..+.+....... +++.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~------------------------------~~~~ 55 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVT------------------------------VDGD 55 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEEC------------------------------CSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEE------------------------------EcCC
Confidence 45789999999999999999999987531 1122111122111000 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-------CCCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-------HDDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-------~~~~vilV 207 (551)
-...+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 56 ~~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 124 (182)
T 1ky3_A 56 KVATMQVWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124 (182)
T ss_dssp CCEEEEEECCC---------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEE
T ss_pred cEEEEEEEECCCChH-----------hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEE
Confidence 013489999999654 333444566899999999999852211122333333321 57899999
Q ss_pred EcCCCCCCHHH-H-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQ-L-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~-~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+..... . .+...... . .....+++.+||++|.|+
T Consensus 125 ~nK~Dl~~~~~~v~~~~~~~~~-~-----~~~~~~~~~~Sa~~~~gi 165 (182)
T 1ky3_A 125 GNKIDAEESKKIVSEKSAQELA-K-----SLGDIPLFLTSAKNAINV 165 (182)
T ss_dssp EECTTSCGGGCCSCHHHHHHHH-H-----HTTSCCEEEEBTTTTBSH
T ss_pred EECCccccccccCCHHHHHHHH-H-----hcCCCeEEEEecCCCCCH
Confidence 99999964321 0 11111111 1 012346788999999887
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=142.38 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=87.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+... ..+..+.+... .+..+. .
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~------------ 67 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR-TEATIGVDFRERAVDIDG-----------------E------------ 67 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS-CCCCCSCCEEEEEEEETT-----------------E------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCcceEEEEEEEEECC-----------------E------------
Confidence 4557999999999999999999999875321 12211212111 111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchH-HHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFT-GVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIV 207 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~-~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilV 207 (551)
...+.+|||||... +. .....++..+|++++|+|+.+.........++..+. ..+.|+++|
T Consensus 68 ---~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 133 (189)
T 1z06_A 68 ---RIKIQLWDTAGQER-----------FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133 (189)
T ss_dssp ---EEEEEEEECCCSHH-----------HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEE
T ss_pred ---EEEEEEEECCCchh-----------hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 02489999999643 33 455677899999999999985211112223333332 457899999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
+||+|+.+..++. +......... ..+++.+||+++
T Consensus 134 ~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~ 169 (189)
T 1z06_A 134 GNKCDLRSAIQVPTDLAQKFADTH-------SMPLFETSAKNP 169 (189)
T ss_dssp EECTTCGGGCCSCHHHHHHHHHHT-------TCCEEECCSSSG
T ss_pred EECccccccceeCHHHHHHHHHHc-------CCEEEEEeCCcC
Confidence 9999996532211 1111111111 236788999988
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-16 Score=164.19 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+|+|.+|||||||+|+|++.+...+...+++|++.......- .+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~----------------------~g--------- 280 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH----------------------DK--------- 280 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE----------------------TT---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE----------------------CC---------
Confidence 34689999999999999999999998665666666665553221110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCCh----HHHHHHHHHhCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD----EFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~----~~~~~l~~l~~~~~~vilVlNK 210 (551)
..+.+|||||+.+... .++. . ..+....++..+|++++|+|+++ +.+. ....++..+. ++|+++|+||
T Consensus 281 --~~l~liDT~G~~~~~~-~ve~-~-gi~~~~~~~~~aD~vl~VvD~s~-~~s~~~~~~~~~~l~~l~--~~piIvV~NK 352 (476)
T 3gee_A 281 --TMFRLTDTAGLREAGE-EIEH-E-GIRRSRMKMAEADLILYLLDLGT-ERLDDELTEIRELKAAHP--AAKFLTVANK 352 (476)
T ss_dssp --EEEEEEC-----------------------CCCSSCSEEEEEEETTT-CSSGGGHHHHHHHHHHCT--TSEEEEEEEC
T ss_pred --eEEEEEECCCCCcchh-HHHH-H-HHHHHHhhcccCCEEEEEEECCC-CcchhhhHHHHHHHHhcC--CCCEEEEEEC
Confidence 3489999999976221 1110 0 01233446789999999999996 5554 4455555554 6899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+...... ..+...+ ..+++.+||++|.|+
T Consensus 353 ~Dl~~~~~~~~---~~l~~~~------~~~~i~vSAktg~GI 385 (476)
T 3gee_A 353 LDRAANADALI---RAIADGT------GTEVIGISALNGDGI 385 (476)
T ss_dssp TTSCTTTHHHH---HHHHHHH------TSCEEECBTTTTBSH
T ss_pred cCCCCccchhH---HHHHhcC------CCceEEEEECCCCCH
Confidence 99987544321 1121111 146789999999987
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-16 Score=142.56 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=91.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+|.. .... +..+. .
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-----------------~---------- 57 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD---DSNHTIGVEFGSKIINVGG-----------------K---------- 57 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT---TCCCCSEEEEEEEEEEETT-----------------E----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCccceEEEEEEEEECC-----------------E----------
Confidence 345899999999999999999999987532 2222222 1111 10000 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|
T Consensus 58 -----~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 121 (186)
T 2bme_A 58 -----YVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 121 (186)
T ss_dssp -----EEEEEEEEECCSGG-----------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred -----EEEEEEEeCCCcHH-----------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 02489999999653 45566677899999999999985211111233443332 457899999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+..... ......... ...+.+.+||++|.|+
T Consensus 122 ~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 122 GNKKDLDADREVTFLEASRFAQE-------NELMFLETSALTGENV 160 (186)
T ss_dssp EECGGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTCTTH
T ss_pred EECcccccccccCHHHHHHHHHH-------cCCEEEEecCCCCCCH
Confidence 9999996432111 111111111 1247788999999887
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=162.12 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCC------CCCCCCccceEEEEEeCCCccccCCCCccccccccccccccee
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGI------HIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQ 127 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~------~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~ 127 (551)
+..++|+++|..|+|||||+|+|++.+.... ...++.|.+.. +..+. ..+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~----------------~~~~~------~~~-- 72 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIG----------------FSAFK------LEN-- 72 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------C----------------CCEEE------ETT--
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecc----------------eEEEE------ECC--
Confidence 4457999999999999999999998762100 01111111110 00000 011
Q ss_pred EEecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEE
Q psy11743 128 CSLVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIV 207 (551)
Q Consensus 128 ~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilV 207 (551)
..+.+|||||+.+ +...+...+..+|++++|+|+.+ +...+..+.+..+...+.|.++|
T Consensus 73 ---------~~i~iiDtPGh~~-----------~~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~ip~Ivv 131 (482)
T 1wb1_A 73 ---------YRITLVDAPGHAD-----------LIRAVVSAADIIDLALIVVDAKE-GPKTQTGEHMLILDHFNIPIIVV 131 (482)
T ss_dssp ---------EEEEECCCSSHHH-----------HHHHHHHHTTSCCEEEEEEETTT-CSCHHHHHHHHHHHHTTCCBCEE
T ss_pred ---------EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEecCC-CccHHHHHHHHHHHHcCCCEEEE
Confidence 4599999999743 67777888899999999999996 77788888888888888999999
Q ss_pred EcCCCCCCHHHHHHHH---HHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVY---GALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~---~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+.+...... ...+... .+....+++++||++|.|+
T Consensus 132 iNK~Dl~~~~~~~~~~~~l~~~l~~~---~~~~~~~ii~vSA~~g~gI 176 (482)
T 1wb1_A 132 ITKSDNAGTEEIKRTEMIMKSILQST---HNLKNSSIIPISAKTGFGV 176 (482)
T ss_dssp EECTTSSCHHHHHHHHHHHHHHHHHS---SSGGGCCEEECCTTTCTTH
T ss_pred EECCCcccchhHHHHHHHHHHHHhhh---cccccceEEEEECcCCCCH
Confidence 9999999754332222 2222111 0112457899999999887
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-16 Score=140.57 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=80.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|++....... .+.++.+.......-+ +. .
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~---------------~ 50 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAH-EMENSEDTYERRIMVD----------------KE---------------E 50 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEET----------------TE---------------E
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccc-cCCCcCCeeeEEEEEC----------------Ce---------------E
Confidence 58999999999999999999976643211 1112222211110000 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHH-HHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTG-VLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~ 211 (551)
..+.++||||.... .. ....++..+|++++|+|+.+.........++..+.. .+.|+++|+||+
T Consensus 51 ~~~~i~D~~g~~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 51 VTLIVYDIWEQGDA-----------GGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEECCCCC-------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEECCCcccc-----------chhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 34789999998651 11 223456789999999999852111122333333332 378999999999
Q ss_pred CCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+...... ......... ..+.+.+||++|.|+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 120 DLARSREVSLEEGRHLAGTL-------SCKHIETSAALHHNT 154 (169)
T ss_dssp TCGGGCCSCHHHHHHHHHHT-------TCEEEECBTTTTBSH
T ss_pred chhhcccCCHHHHHHHHHHc-------CCcEEEecCccCCCH
Confidence 9874322111 111111111 236789999999887
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.3e-16 Score=145.42 Aligned_cols=148 Identities=15% Similarity=0.152 Sum_probs=89.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+..+.+... .+..+. ..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~-----------------~~----------- 56 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDG-----------------KT----------- 56 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETT-----------------EE-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECC-----------------EE-----------
Confidence 345799999999999999999999987532 112222222111 111100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
..+.+|||||...- ......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 57 ----~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 121 (206)
T 2bcg_Y 57 ----VKLQIWDTAGQERF-----------RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121 (206)
T ss_dssp ----EEEEEECCTTTTTT-----------TCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ----EEEEEEeCCChHHH-----------HHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 24899999997642 2223345689999999999985221122234444443 34689999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...+. +......... ..+++.+||++|.|+
T Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 122 KCDLKDKRVVEYDVAKEFADAN-------KMPFLETSALDSTNV 158 (206)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHT-------TCCEEECCTTTCTTH
T ss_pred CCCCccccccCHHHHHHHHHHc-------CCeEEEEeCCCCCCH
Confidence 99997632111 1111111111 236788999999887
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=141.58 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=88.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|.+|||||||+|+|++..+. . ..||......... + ..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~--~~~t~~~~~~~~~-----------------~-----~~-------- 72 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVE-----------------Y-----KN-------- 72 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE--E--EEEETTEEEEEEE-----------------E-----TT--------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc--c--cCCcCceeEEEEE-----------------E-----CC--------
Confidence 34689999999999999999999987642 1 1233331111000 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+|
T Consensus 73 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 138 (192)
T 2b6h_A 73 ---ICFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138 (192)
T ss_dssp ---EEEEEEECC----------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEE
Confidence 3589999999864 233455677899999999999862222222344444332 3789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHccc-ccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGK-VLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~-l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+ +... ++. .......+++.+||++|.|+
T Consensus 139 K~Dl~~~~~~~~-i~~~---~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 139 KQDMPNAMPVSE-LTDK---LGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp CTTSTTCCCHHH-HHHH---TTGGGCSSCCEEEEECBTTTTBTH
T ss_pred CCCCCCCCCHHH-HHHH---hCcccccCCceEEEECcCCCcCCH
Confidence 999976422111 1111 221 11223456889999998887
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=151.63 Aligned_cols=149 Identities=23% Similarity=0.191 Sum_probs=93.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|+|... .+...++.|.+....... +.+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~----------------------~~~--------- 49 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIME----------------------YRE--------- 49 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEE----------------------ETT---------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEE----------------------ECC---------
Confidence 457899999999999999999999864 233344444443322111 001
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~ 211 (551)
..+.+|||||+.+-..... -......++ .++|++++|+|+++. .....+...+.+.+ .|+++|+||+
T Consensus 50 --~~~~l~DtpG~~~~~~~~~-----~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~~~p~ilv~NK~ 119 (271)
T 3k53_A 50 --KEFLVVDLPGIYSLTAHSI-----DELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEMEVKNIILVLNKF 119 (271)
T ss_dssp --EEEEEEECCCCSCCCSSCH-----HHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTTCCSEEEEEECH
T ss_pred --ceEEEEeCCCccccccCCH-----HHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhcCCCCEEEEEECh
Confidence 3489999999976322110 112333444 789999999999862 33444555555566 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..............++ .+++.+||++|.|+
T Consensus 120 Dl~~~~~~~~~~~~l~~~lg-------~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 120 DLLKKKGAKIDIKKMRKELG-------VPVIPTNAKKGEGV 153 (271)
T ss_dssp HHHHHHTCCCCHHHHHHHHS-------SCEEECBGGGTBTH
T ss_pred hcCcccccHHHHHHHHHHcC-------CcEEEEEeCCCCCH
Confidence 98643321111111222222 36889999998887
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=142.23 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=88.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+|+|++..+. . ..||..... .+... .
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~--~~~t~~~~~~~~~~~-----------------------~-------- 65 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV--T--TVPTVGVNLETLQYK-----------------------N-------- 65 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE--E--ECSSTTCCEEEEEET-----------------------T--------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC--C--cCCCCceEEEEEEEC-----------------------C--------
Confidence 4589999999999999999999877642 1 122322111 01000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-hC---CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-RG---HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~---~~~~vilVlN 209 (551)
..+.++||||...-.. ....++..+|++++|+|+++.........++..+ .. .+.|+++|+|
T Consensus 66 ---~~~~~~Dt~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 131 (189)
T 2x77_A 66 ---ISFEVWDLGGQTGVRP-----------YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFAN 131 (189)
T ss_dssp ---EEEEEEEECCSSSSCC-----------CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEE
T ss_pred ---EEEEEEECCCCHhHHH-----------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEE
Confidence 4589999999865211 1223457899999999998632222223334333 32 3789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+. .... ..... .....+++.+||+++.|+
T Consensus 132 K~Dl~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 132 KQDLPDAASEAEI-AEQL-GVSSI-MNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp CTTSTTCCCHHHH-HHHT-TGGGC-CSSCEEEEECCTTTCTTH
T ss_pred CCCCcCCCCHHHH-HHHh-Chhhc-cCCceEEEEccCCCccCH
Confidence 9999864221111 1111 11111 222347889999999887
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-16 Score=145.62 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=90.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|.+|||||||+|+|++..+. .....++.+.......-+ +.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~----------------~~------------- 76 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVD----------------GK------------- 76 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-----------------C-------------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEEC----------------CE-------------
Confidence 34689999999999999999999987752 112222222221111000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhCC--CCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRGH--DDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~~--~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+ ..+... ..++..+... +.|+++|+|
T Consensus 77 --~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~n 142 (204)
T 4gzl_A 77 --PVNLGLWDTAGLED-----------YDRLRPLSYPQTDVFLICFSLVS-PASFENVRAKWYPEVRHHCPNTPIILVGT 142 (204)
T ss_dssp --EEEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCSSCCEEEEEE
T ss_pred --EEEEEEEECCCchh-----------hHHHHHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 02367999999853 23333446789999999999985 222222 1345555443 789999999
Q ss_pred CCCCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+.... ....+.. .....+++.+||++|.|+
T Consensus 143 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~SA~~g~gi 192 (204)
T 4gzl_A 143 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQRGL 192 (204)
T ss_dssp CHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred chhhccchhhhhhhhccccccccHHHHHHHHH--hcCCcEEEEeeCCCCCCH
Confidence 9999765432221110 0000000 122346889999999987
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=141.56 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=84.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|||||||+|+|++..+.......+++... +..+ +
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~---~~~~-----------------------~--------- 68 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE---LTIA-----------------------G--------- 68 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE---EEET-----------------------T---------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEE---EEEC-----------------------C---------
Confidence 3578999999999999999999987753222122222111 1010 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK 210 (551)
..+.++||||...- ......++..+|++++|+|+.+.........++..+.+ .+.|+++|+||
T Consensus 69 --~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 135 (198)
T 1f6b_A 69 --MTFTTFDLGGHIQA-----------RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNK 135 (198)
T ss_dssp --EEEEEEEECC---------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEEC
T ss_pred --EEEEEEECCCcHhh-----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEEC
Confidence 34899999997641 12233456799999999999852222222344444332 47899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHccc--------cc--CCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGK--------VL--QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~--------l~--~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.......+ ....+..... +. .....+++.+||++|.|+
T Consensus 136 ~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 186 (198)
T 1f6b_A 136 IDRPEAISEER-LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186 (198)
T ss_dssp TTSTTCCCHHH-HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSH
T ss_pred CCccccCCHHH-HHHHhCcccccccccccccccccCceEEEEEEECCCCCCH
Confidence 99974211111 1111110000 00 113457889999999887
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=139.92 Aligned_cols=146 Identities=13% Similarity=0.199 Sum_probs=88.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc--ceEEE-EEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT--DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt--~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|.+|||||||+|+|++..+. ....||. +.... +...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~------------------------------ 51 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG---KQYKQTIGLDFFLRRITLP------------------------------ 51 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT---HHHHHTTTSSEEEEEEEET------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC---CCCCCceeEEEEEEEEEeC------------------------------
Confidence 4578999999999999999999998752 1111222 11111 1110
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCc-EE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDK-IR 205 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~-vi 205 (551)
......+.++||||... +......++..+|++++|+|+++.........++..+.. ...| ++
T Consensus 52 -~~~~~~~~~~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~ii 119 (178)
T 2hxs_A 52 -GNLNVTLQIWDIGGQTI-----------GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA 119 (178)
T ss_dssp -TTEEEEEEEEECTTCCT-----------TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEE
T ss_pred -CCCEEEEEEEECCCCcc-----------ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEE
Confidence 00003489999999764 233455678999999999999852211122344444433 2456 78
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.+...+ .+.........+ .+.+.+||++|.|+
T Consensus 120 lv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 120 LVGNKIDLEHMRTIKPEKHLRFCQENG-------FSSHFVSAKTGDSV 160 (178)
T ss_dssp EEEECGGGGGGCSSCHHHHHHHHHHHT-------CEEEEECTTTCTTH
T ss_pred EEEEccccccccccCHHHHHHHHHHcC-------CcEEEEeCCCCCCH
Confidence 99999999653211 011111111121 36788999999887
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=141.55 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ... +|... ...+.+. +
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~-----------------------~-------- 61 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVV--TTK--PTIGFNVETLSYK-----------------------N-------- 61 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE--EEC--SSTTCCEEEEEET-----------------------T--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcC--ccC--CcCccceEEEEEC-----------------------C--------
Confidence 4589999999999999999999976641 111 12111 0010000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++||||...- ......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 62 ---~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (183)
T 1moz_A 62 ---LKLNVWDLGGQTSI-----------RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 127 (183)
T ss_dssp ---EEEEEEEEC----C-----------CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEE
T ss_pred ---EEEEEEECCCCHhH-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEE
Confidence 45899999998652 1122345679999999999986322233334444443 25789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccc-cCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKV-LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l-~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+ +... ++.. ......+++.+||++|.|+
T Consensus 128 K~Dl~~~~~~~~-i~~~---~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 128 KQDQPGALSASE-VSKE---LNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp CTTSTTCCCHHH-HHHH---TTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred CCCCCCCCCHHH-HHHH---hCcccccCCceEEEEccCCCCcCH
Confidence 999976321111 1111 2211 1223347889999999887
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=144.12 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=91.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+..++|+|+|.+|||||||+|+|++..+. ....+|.. .... +..+. .
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~---------- 73 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEING-----------------E---------- 73 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEEEEEETT-----------------E----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEEECC-----------------E----------
Confidence 34579999999999999999999998753 22333322 2111 11100 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilV 207 (551)
...+.++||||... +......++..+|++++|+|+++.........++..+. ..+.|+++|
T Consensus 74 -----~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv 137 (201)
T 2ew1_A 74 -----KVKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV 137 (201)
T ss_dssp -----EEEEEEEEECCSGG-----------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred -----EEEEEEEECCCcHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 02489999999643 45566677899999999999985211111234444443 346889999
Q ss_pred EcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+..++. +......... ..+++.+||++|.|+
T Consensus 138 ~NK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 138 GNKIDLAERREVSQQRAEEFSEAQ-------DMYYLETSAKESDNV 176 (201)
T ss_dssp EECGGGGGGCSSCHHHHHHHHHHH-------TCCEEECCTTTCTTH
T ss_pred EECCCCccccccCHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 9999997432110 1111111111 236788999999987
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=144.39 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++..+.. ...+..+.+.......-+ +.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----------------~~-------------- 55 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVD----------------DR-------------- 55 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESS----------------SC--------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEEC----------------CE--------------
Confidence 45789999999999999999999987531 112211222211111000 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-------CCCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-------HDDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-------~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 56 -~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv 123 (207)
T 1vg8_A 56 -LVTMQIWDTAGQER-----------FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123 (207)
T ss_dssp -EEEEEEEEECSSGG-----------GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEE
T ss_pred -EEEEEEEeCCCcHH-----------HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 02489999999653 111223456789999999999852111112233333321 36899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+.....+........ ....+++.+||++|.|+
T Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 124 GNKIDLENRQVATKRAQAWCYS------KNNIPYFETSAKEAINV 162 (207)
T ss_dssp EECTTSSCCCSCHHHHHHHHHH------TTSCCEEECBTTTTBSH
T ss_pred EECCCCcccccCHHHHHHHHHh------cCCceEEEEeCCCCCCH
Confidence 9999997432111111111110 12346789999999887
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=140.58 Aligned_cols=147 Identities=15% Similarity=0.171 Sum_probs=89.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+ +.+.....-. +.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~----------------~~------------- 64 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP---EEYVPTVFDHYAVSVTVG----------------GK------------- 64 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---CSCCCSSCCCEEEEEESS----------------SC-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEEEEEEC----------------CE-------------
Confidence 3469999999999999999999998652 2222232 2221111000 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHhCC--CCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+........ .++..+... +.|+++|+||
T Consensus 65 --~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 131 (194)
T 2atx_A 65 --QYLLGLYDTAGQED-----------YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131 (194)
T ss_dssp --EEEEEEECCCCSSS-----------STTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEEC
T ss_pred --EEEEEEEECCCCcc-----------hhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 02488999999865 2222334568899999999998521111222 455555543 7899999999
Q ss_pred CCCCCHHHHHH-------------HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-------------VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-------------~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.....+ ......... ...+.+.+||++|.|+
T Consensus 132 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~Sa~~g~gi 180 (194)
T 2atx_A 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI------GACCYVECSALTQKGL 180 (194)
T ss_dssp TTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH------TCSCEEECCTTTCTTH
T ss_pred hhhcccccchhhcccccCcccCHHHHHHHHHHc------CCcEEEEeeCCCCCCH
Confidence 99986432111 011111111 1126788999999887
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=141.89 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=89.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEE-EEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
+...+|+|+|.+|||||||+|+|++..+. ....+|.. .... +..+. .
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~---------- 76 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS---ERQGSTIGVDFTMKTLEIQG-----------------K---------- 76 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETT-----------------E----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC---CCCCCCcceEEEEEEEEECC-----------------E----------
Confidence 34579999999999999999999998752 22223321 1111 10000 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIV 207 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilV 207 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 77 -----~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv 140 (201)
T 2hup_A 77 -----RVKLQIWDTAGQER-----------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140 (201)
T ss_dssp -----EEEEEEECCTTCGG-----------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred -----EEEEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 02489999999753 566677888999999999999852211222344444442 56899999
Q ss_pred EcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.....+ .+......... ...+++.+||++|.|+
T Consensus 141 ~NK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 141 GNKSDLSELREVSLAEAQSLAEHY------DILCAIETSAKDSSNV 180 (201)
T ss_dssp EECTTCGGGCCSCHHHHHHHHHHT------TCSEEEECBTTTTBSH
T ss_pred EECCccccccccCHHHHHHHHHHc------CCCEEEEEeCCCCCCH
Confidence 999999753111 01111111111 1226789999999887
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=160.37 Aligned_cols=152 Identities=17% Similarity=0.177 Sum_probs=98.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+|+|.+|+|||||+|+|++.++..+...+++|++.....+.-. +.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~----------------~~------------- 82 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH----------------PI------------- 82 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET----------------TT-------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC----------------CC-------------
Confidence 4568999999999999999999999887555555655655433221100 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||+.+... + +....+.+..++..+|++|+|+|+ +.......++..+.+.+.|+++|+||+|+
T Consensus 83 ---~~l~liDTpG~~d~~~--l--~~~~~~~~~~~l~~aD~vllVvD~---~~~~~~~~~l~~l~~~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 83 ---GPVTLVDTPGLDDVGE--L--GRLRVEKARRVFYRADCGILVTDS---APTPYEDDVVNLFKEMEIPFVVVVNKIDV 152 (423)
T ss_dssp ---EEEEEEECSSTTCCCT--T--CCCCHHHHHHHHTSCSEEEEECSS---SCCHHHHHHHHHHHHTTCCEEEECCCCTT
T ss_pred ---CeEEEEECcCCCcccc--h--hHHHHHHHHHHHhcCCEEEEEEeC---CChHHHHHHHHHHHhcCCCEEEEEeCcCC
Confidence 2489999999986321 1 111244567788999999999998 45677788899998889999999999999
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...... + ....+.. ....+++.+||++|.|+
T Consensus 153 ~~~~~~-~----~~~~l~~---~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 153 LGEKAE-E----LKGLYES---RYEAKVLLVSALQKKGF 183 (423)
T ss_dssp TTCCCT-H----HHHHSSC---CTTCCCCCCSSCCTTST
T ss_pred CCccHH-H----HHHHHHH---HcCCCEEEEECCCCCCH
Confidence 865432 1 1111221 22346788999999988
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=141.36 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=88.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+. .... +... +.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------~~------------ 51 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTVFDNYSANVMVD-----------------GK------------ 51 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC---SSCCCCSCCEEEEEEEET-----------------TE------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC---CCcCCcccceeEEEEEEC-----------------CE------------
Confidence 3478999999999999999999987752 11122222 2111 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhCC--CCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRGH--DDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~~--~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+ ..+... . .++..+... +.|+++|+
T Consensus 52 ---~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~ 116 (186)
T 1mh1_A 52 ---PVNLGLWDTAGQED-----------YDRLRPLSYPQTDVSLICFSLVS-PASFENVRAKWYPEVRHHCPNTPIILVG 116 (186)
T ss_dssp ---EEEEEEECCCCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHSTTSCEEEEE
T ss_pred ---EEEEEEEECCCCHh-----------HHHHHHHhccCCcEEEEEEECCC-hhhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 02478999999854 22223345689999999999985 222222 1 355555432 78999999
Q ss_pred cCCCCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.....+.+.. ....+.. .....+++.+||++|.|+
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~Sa~~g~gi 167 (186)
T 1mh1_A 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQRGL 167 (186)
T ss_dssp ECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred EcccccccchhhhhhcccccccCCHHHHHHHHH--hcCCcEEEEecCCCccCH
Confidence 99999764322111110 0000000 111237889999999887
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=143.29 Aligned_cols=146 Identities=20% Similarity=0.180 Sum_probs=88.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+.. +.....- . +..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~---~~~~~t~~~~~~~~~~~------~----------~~~------------ 70 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP---TAYVPTVFENFSHVMKY------K----------NEE------------ 70 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEEE------T----------TEE------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC---CccCCeeeeeeEEEEEE------C----------CEE------------
Confidence 4579999999999999999999998752 222233222 1111000 0 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlN 209 (551)
..+.++||||... +......++..+|++++|+|+.+ ..+... ..++..+.. .+.|+++|+|
T Consensus 71 ---~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~n 135 (194)
T 3reg_A 71 ---FILHLWDTAGQEE-----------YDRLRPLSYADSDVVLLCFAVNN-RTSFDNISTKWEPEIKHYIDTAKTVLVGL 135 (194)
T ss_dssp ---EEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTSEEEEEEE
T ss_pred ---EEEEEEECCCcHH-----------HHHHhHhhccCCcEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 2378999999653 33334456789999999999985 222211 234444443 3689999999
Q ss_pred CCCCCCHH--HH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQ--QL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~--~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.. .. .+.........+. .+.+.+||++|.|+
T Consensus 136 K~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 136 KVDLRKDGSDDVTKQEGDDLCQKLGC------VAYIEASSVAKIGL 175 (194)
T ss_dssp CGGGCCTTTTCCCHHHHHHHHHHHTC------SCEEECBTTTTBSH
T ss_pred ChhhccCCCCcccHHHHHHHHHhcCC------CEEEEeecCCCCCH
Confidence 99997421 10 1111122222221 23788999999887
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=155.34 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=73.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHHHHHHHHHhCCC-CcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEFRRSIEALRGHD-DKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~-~~vilVl 208 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+++ + ...+..+.+..+...+ .|+++|+
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~-g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCST-NAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCC-CccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 4689999999954 67788888999999999999986 3 4466667777666666 4599999
Q ss_pred cCCCCCC--HHH---HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVD--HQQ---LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~--~~~---~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+ ... ..+.+...+..++. .....+++++||++|.|+
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~--~~~~~~~i~iSA~~g~gi 225 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGF--FEDNINWVPISGFSGEGV 225 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTC--CGGGEEEEECCSSSCTTS
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcCC--CcccceEEEEeeecCCCc
Confidence 9999986 222 12222333333343 223467899999999998
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-15 Score=134.78 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=84.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+++|.+|||||||+|+|++..+.. . .||... .. .+..+. .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~--~~t~~~~~~~~~~~~~-----------------~------------ 52 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--L--EKTESEQYKKEMLVDG-----------------Q------------ 52 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--C--SSCSSSEEEEEEEETT-----------------E------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--c--CCCcceeEEEEEEECC-----------------E------------
Confidence 45789999999999999999999988642 1 223221 11 111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH---HhC---CCCcEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA---LRG---HDDKIRI 206 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~---l~~---~~~~vil 206 (551)
...+.++||||... ..++..+|++++|+|+.+.........++.+ +.. .+.|+++
T Consensus 53 ---~~~l~i~Dt~G~~~----------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 113 (178)
T 2iwr_A 53 ---THLVLIREEAGAPD----------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113 (178)
T ss_dssp ---EEEEEEEECSSSCC----------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEE
T ss_pred ---EEEEEEEECCCCch----------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 02478999999753 2345789999999999852211222333223 332 3689999
Q ss_pred EEcCCCCC-------CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 207 VLNKADMV-------DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~-------~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+||+|+. ..++.. ...... ...+.+.+||++|.|+
T Consensus 114 v~nK~Dl~~~~~~~v~~~~~~----~~~~~~------~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 114 VGTQDRISASSPRVVGDARAR----ALXADM------KRCSYYETXATYGLNV 156 (178)
T ss_dssp EEECTTCBTTBCCCSCHHHHH----HHHHHH------SSEEEEEEBTTTTBTH
T ss_pred EEECccccccccCcCCHHHHH----HHHHhh------cCCeEEEEeccccCCH
Confidence 99999983 122211 111111 1246788999999887
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=143.47 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=85.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+... ..+..+.+.... +..+. .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~------------ 72 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGG-----------------K------------ 72 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETT-----------------E------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECC-----------------e------------
Confidence 3457999999999999999999998875321 111111111111 11100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+. ..+.|+++|+|
T Consensus 73 ---~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 138 (200)
T 2o52_A 73 ---TVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGN 138 (200)
T ss_dssp ---EEEEEEECCTTHHH-----------HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred ---eeEEEEEcCCCcHh-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 02489999999642 22334566789999999999985211112233444333 34789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.....+. ......... ...+.+.+||++|.|+
T Consensus 139 K~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 139 KKDLDPEREVTFLEASRFAQE-------NELMFLETSALTGENV 175 (200)
T ss_dssp CGGGGGGCCSCHHHHHHHHHH-------TTCEEEEECTTTCTTH
T ss_pred CCCcccccccCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 99996432110 111111111 1246788999999887
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=148.30 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=77.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC-CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~-~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|+|.........+ ..|.+....... +.+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~----------------------~~~------- 77 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS----------------------WKE------- 77 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE----------------------ETT-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE----------------------eCC-------
Confidence 34589999999999999999999998863221111 222222211110 011
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKIRIV 207 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~vilV 207 (551)
..+.+|||||+.+......+...++...+..+...+|++|+|+|+.. ++..+..++..+. ...+|+++|
T Consensus 78 ----~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~--~~~~~~~~l~~~~~~~~~~~~~~~iiv 151 (239)
T 3lxx_A 78 ----TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR--YTEEEHKATEKILKMFGERARSFMILI 151 (239)
T ss_dssp ----EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC--CSSHHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred ----ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC--CCHHHHHHHHHHHHHhhhhccceEEEE
Confidence 45899999999864322111112244444455577899999999974 4455555555543 234689999
Q ss_pred EcCCCCCCHHHH
Q psy11743 208 LNKADMVDHQQL 219 (551)
Q Consensus 208 lNK~Dl~~~~~~ 219 (551)
+||+|+.....+
T Consensus 152 ~nK~D~~~~~~~ 163 (239)
T 3lxx_A 152 FTRKDDLGDTNL 163 (239)
T ss_dssp EECGGGC-----
T ss_pred EeCCccCCcccH
Confidence 999999876544
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=160.76 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=94.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+|+|.+|||||||+|+|++.+...+...+++|++....... +++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~----------------------~~g--------- 271 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV----------------------VGG--------- 271 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE----------------------ETT---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEE----------------------ECC---------
Confidence 3468999999999999999999998876666666666554211000 001
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||+.+.... ++. . ..+.....+..+|++++|+|+.+ +.+.....++..+.. +|+++|+||+|+.
T Consensus 272 --~~v~liDT~G~~~~~~~-ve~-~-gi~~~~~~~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~--~piivV~NK~Dl~ 343 (462)
T 3geh_A 272 --IPVQVLDTAGIRETSDQ-VEK-I-GVERSRQAANTADLVLLTIDAAT-GWTTGDQEIYEQVKH--RPLILVMNKIDLV 343 (462)
T ss_dssp --EEEEECC-----------------------CCCCSCSEEEEEEETTT-CSCHHHHHHHHHHTT--SCEEEEEECTTSS
T ss_pred --EEEEEEECCccccchhH-HHH-H-HHHHHhhhhhcCCEEEEEeccCC-CCCHHHHHHHHhccC--CcEEEEEECCCCC
Confidence 34899999999653211 110 0 01223445688999999999996 777887778777764 7999999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+..... .+..+ ....+++.+||++|.|+
T Consensus 344 ~~~~~~--------~~~~~--~~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 344 EKQLIT--------SLEYP--ENITQIVHTAAAQKQGI 371 (462)
T ss_dssp CGGGST--------TCCCC--TTCCCEEEEBTTTTBSH
T ss_pred cchhhH--------HHHHh--ccCCcEEEEECCCCCCH
Confidence 754321 11111 13457889999999887
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=142.74 Aligned_cols=150 Identities=16% Similarity=0.242 Sum_probs=87.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..++|+++|.+|||||||+|+|++..+.. ...+|+ +.+.. +... +.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~------------ 71 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE---VYVPTVFENYVADIEVD-----------------GK------------ 71 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEET-----------------TE------------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC---cCCCcccceEEEEEEEC-----------------CE------------
Confidence 34789999999999999999999987531 112222 22111 1100 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC--CCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~~vilVlN 209 (551)
...+.+|||||...- ......++..+|++++|+|+.+....... ..++..+.. .+.|+++|+|
T Consensus 72 ---~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 137 (207)
T 2fv8_A 72 ---QVELALWDTAGQEDY-----------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVAN 137 (207)
T ss_dssp ---EEEEEEEECTTCTTC-----------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEE
T ss_pred ---EEEEEEEECCCcHHH-----------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 024889999997652 22233456889999999999852111111 344555543 3789999999
Q ss_pred CCCCCCHHHHHHHHHHH---------HHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGAL---------MWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~---------~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+.+... ...+.. .....+++.+||++|.|+
T Consensus 138 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~SA~~g~gi 187 (207)
T 2fv8_A 138 KKDLRSDEHVRTELARMKQEPVRTDDGRAMAV--RIQAYDYLECSAKTKEGV 187 (207)
T ss_dssp CGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred chhhhccccchhhhhhcccCCCCHHHHHHHHH--hcCCCEEEEeeCCCCCCH
Confidence 99998654332211110 000000 111226788999999887
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-15 Score=140.16 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=89.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
+..++|+|+|.+|||||||++++++..+. ....||.. ......... +
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~---~~~~~Tig~d~~~k~~~~~------~---------------------- 59 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD---NTYQATIGIDFLSKTMYLE------D---------------------- 59 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-------------CEEEEEECS------S----------------------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCC---CCcCCccceEEEEEEEEec------c----------------------
Confidence 35679999999999999999999988753 22223321 111100000 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVl 208 (551)
..-.+.||||+|... +......++..+|++++|+|..+.........++..+. ..+.|++||.
T Consensus 60 ---~~v~l~iwDtaGqe~-----------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVg 125 (216)
T 4dkx_A 60 ---RTIRLQLWDTAGLER-----------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG 125 (216)
T ss_dssp ---CEEEEEEECCSCTTT-----------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEE
T ss_pred ---eEEEEEEEECCCchh-----------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 002478999999865 45566778899999999999985222222234444443 3568999999
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.+.+.. .........+ .+.+.+||++|.|+
T Consensus 126 NK~Dl~~~r~V~~~e~~~~a~~~~-------~~~~e~SAktg~nV 163 (216)
T 4dkx_A 126 NKTDLADKRQVSIEEGERKAKELN-------VMFIETSAKAGYNV 163 (216)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHHT-------CEEEEEBTTTTBSH
T ss_pred eccchHhcCcccHHHHhhHHHHhC-------CeeEEEeCCCCcCH
Confidence 9999965322111 1111111122 35678999999998
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-15 Score=140.17 Aligned_cols=150 Identities=15% Similarity=0.201 Sum_probs=89.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eE-EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+++|.+|||||||+|+|++..+.. ...+|+. .+ ..+.... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~------------ 71 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVFENYIADIEVDG-----------------K------------ 71 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS---SCCCSSCCCCEEEEEETT-----------------E------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc---ccCCcccceEEEEEEECC-----------------E------------
Confidence 34689999999999999999999987532 1222221 11 1111100 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCC--CCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRGH--DDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+....... ..++..+... +.|+++|+|
T Consensus 72 ---~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n 137 (201)
T 2gco_A 72 ---QVELALWDTAGQED-----------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN 137 (201)
T ss_dssp ---EEEEEEECCCCSGG-----------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEE
T ss_pred ---EEEEEEEECCCchh-----------HHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 02488999999753 222233456899999999999852111111 3445555433 789999999
Q ss_pred CCCCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+.+.. ....+.. .....+.+.+||++|.|+
T Consensus 138 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~SA~~g~gi 187 (201)
T 2gco_A 138 KKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN--RISAFGYLECSAKTKEGV 187 (201)
T ss_dssp CGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred cHHhhcCccchhhhcccccCcCCHHHHHHHHH--hCCCcEEEEeeCCCCCCH
Confidence 9999875432211100 0000000 112236788999999887
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.1e-15 Score=138.20 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=88.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...++|+|+|.+|||||||+|+|++.... ....+..+.+.... +..+. .
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~------------ 70 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDK-----------------E------------ 70 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETT-----------------E------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECC-----------------E------------
Confidence 45589999999999999999999876532 12222222222211 11110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHH-HHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTG-VLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIV 207 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilV 207 (551)
...+.++||||... +.. ....++..+|++++|+|+.+.........++..+.. .+.|+++|
T Consensus 71 ---~~~l~i~Dt~g~~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 136 (195)
T 3cbq_A 71 ---EVTLVVYDIWEQGD-----------AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136 (195)
T ss_dssp ---EEEEEEECCCCCSG-----------GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEE
T ss_pred ---EEEEEEEecCCCcc-----------chhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 02478999999864 121 344567899999999999852111222344444432 37899999
Q ss_pred EcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+.+...+ .+......... ..+.+.+||++|.++
T Consensus 137 ~nK~Dl~~~~~v~~~~~~~~a~~~-------~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 137 GNKSDLARSREVSLEEGRHLAGTL-------SCKHIETSAALHHNT 175 (195)
T ss_dssp EECTTCTTTCCSCHHHHHHHHHHT-------TCEEEEEBTTTTBSH
T ss_pred eechhccccCCcCHHHHHHHHHHh-------CCEEEEEcCCCCCCH
Confidence 999999753211 11111111111 236788999999887
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-15 Score=141.31 Aligned_cols=147 Identities=21% Similarity=0.228 Sum_probs=89.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+ +.+.....- . +.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~---~~~~~t~~~~~~~~~~~------~----------~~------------- 55 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSANVAV------D----------GQ------------- 55 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCSSCCCEEEEEEC------S----------SC-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---ccCCCccceeEEEEEEE------C----------CE-------------
Confidence 3478999999999999999999988752 1222232 222110000 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCC--CCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+....... ..++..+... +.|+++|+||
T Consensus 56 --~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 122 (212)
T 2j0v_A 56 --IVNLGLWDTAGQED-----------YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTK 122 (212)
T ss_dssp --EEEEEEECCCCCCC-----------CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEEC
T ss_pred --EEEEEEEECCCcHH-----------HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 02489999999865 222333457899999999999852111111 1455555432 7899999999
Q ss_pred CCCCCHHHH---------HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL---------MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~---------~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .+........++ ..+.+.+||++|.|+
T Consensus 123 ~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~Sa~~g~gi 167 (212)
T 2j0v_A 123 LDLRDDKGYLADHTNVITSTQGEELRKQIG------AAAYIECSSKTQQNV 167 (212)
T ss_dssp HHHHTCHHHHHTCSSCCCHHHHHHHHHHHT------CSEEEECCTTTCTTH
T ss_pred HHhhhCccccccccCCCCHHHHHHHHHHcC------CceEEEccCCCCCCH
Confidence 999764331 111112221122 236788999999987
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=133.12 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=88.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+|+|.+|||||||+|+|++..+. ....+|.+.+.. +..+ +..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~---~~~~~t~~~~~~~~~~~-----------------~~~----------- 66 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV---QEESPEGGRFKKEIVVD-----------------GQS----------- 66 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC---CCCCTTCEEEEEEEEET-----------------TEE-----------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCCcceEEEEEEEC-----------------CEE-----------
Confidence 45579999999999999999999998763 222334332211 1110 000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhC----CCCcEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRG----HDDKIRIV 207 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~----~~~~vilV 207 (551)
..+.+|||||... +. ++..+|++++|+|+.+ ..+.+. ..++..+.. .+.|+++|
T Consensus 67 ----~~l~i~Dt~G~~~-----------~~-----~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv 125 (184)
T 3ihw_A 67 ----YLLLIRDEGGPPE-----------LQ-----FAAWVDAVVFVFSLED-EISFQTVYNYFLRLCSFRNASEVPMVLV 125 (184)
T ss_dssp ----EEEEEEECSSSCC-----------HH-----HHHHCSEEEEEEETTC-HHHHHHHHHHHHHHHTTSCGGGSCEEEE
T ss_pred ----EEEEEEECCCChh-----------hh-----eecCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 2378899999864 22 5678999999999986 222222 456666654 36799999
Q ss_pred EcCCCCCCH--HHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDH--QQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~--~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+... ..+ .+.........+ ..+.+.+||++|.|+
T Consensus 126 ~nK~Dl~~~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 126 GTQDAISAANPRVIDDSRARKLSTDLK------RCTYYETCATYGLNV 167 (184)
T ss_dssp EECTTCBTTBCCCSCHHHHHHHHHHTT------TCEEEEEBTTTTBTH
T ss_pred EECcccccccccccCHHHHHHHHHHcC------CCeEEEecCCCCCCH
Confidence 999998421 100 011111221121 246788999999887
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=142.62 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=62.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc--CCCCCCCCCCCccc--eEE-EEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER--DFPGIHIGPEPTTD--RFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~--~~~~~~~~~~~tt~--~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
...+|+|+|.+|||||||+|+|++. .+. ....+|+. ... .+..+. ..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~~-------- 70 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL---KDYAMTSGVEVVVAPVTIPD-----------------TT-------- 70 (208)
T ss_dssp EEEEEEEC-------------------------------------CEEEECTT-----------------SS--------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc---CCCCCccceEEEEEEEEECC-----------------cc--------
Confidence 3479999999999999999999988 431 12222322 110 111100 00
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCc
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDK 203 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~ 203 (551)
....+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|
T Consensus 71 -----~~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 134 (208)
T 2yc2_C 71 -----VSVELFLLDTAGSDL-----------YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134 (208)
T ss_dssp -----EEEEEEEEETTTTHH-----------HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE
T ss_pred -----cEEEEEEEECCCcHH-----------HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 003489999999853 455566677899999999999852211233445555543 4789
Q ss_pred EEEEEcCCCCCC-HHHH-HHHHHHHHHHcccccCCCCceEEEecccC-CCCC
Q psy11743 204 IRIVLNKADMVD-HQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFW-DQPL 252 (551)
Q Consensus 204 vilVlNK~Dl~~-~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~-g~~~ 252 (551)
+++|+||+|+.+ ...+ .+........++ .+++.+||++ +.|+
T Consensus 135 iilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-------~~~~~~Sa~~~~~gi 179 (208)
T 2yc2_C 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNT-------LDFFDVSANPPGKDA 179 (208)
T ss_dssp EEEEEECC-------CCCHHHHHHHHHHTT-------CEEEECCC-------
T ss_pred EEEEEECcccchhhccCCHHHHHHHHHHcC-------CEEEEeccCCCCcCH
Confidence 999999999976 3221 111122222222 4788999999 9888
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=134.03 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=89.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCC----CccceEEEEEeCCCcc-ccCCCCcccccccccccccceeEE
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE----PTTDRFIAVMYDEREG-SVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~----~tt~~~~~i~~~~~~~-~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
...+|+|+|.+|||||||+|+|.+..... ..... +.........+..... .+.+ .
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~----- 72 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEG-RKGEMVSLATEDERTLFFDFLPLDIGEVKG--------------F----- 72 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGG-GBCCCEEEECSSCEEEEEEECCSSCCCSSS--------------C-----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcccc-ccccccccccccccceeeeecccccccccC--------------C-----
Confidence 45799999999999999999888764311 00000 0011111111111000 0000 0
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH----HHHHHHHhC-----C
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF----RRSIEALRG-----H 200 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~----~~~l~~l~~-----~ 200 (551)
...+.++||||... +......++..+|++++|+|+.+ +...+. ..+..++.. .
T Consensus 73 ------~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~-~~~~~~~~s~~~l~~~l~~~~~~~~ 134 (198)
T 3t1o_A 73 ------KTRFHLYTVPGQVF-----------YNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLD 134 (198)
T ss_dssp ------EEEEEEEECCSCCS-----------CSHHHHHHTTTCCEEEEEEECCG-GGHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred ------ceEEEEEeCCChHH-----------HHHHHHHHHhcCCEEEEEEECCc-chhhHhHHHHHHHHHHHHhhccccC
Confidence 03489999999864 45566678899999999999984 322222 223333332 4
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 201 DDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.|+++|+||+|+.+.....+ ..... . .....+.+.+||++|.|+
T Consensus 135 ~~piilv~NK~Dl~~~~~~~~-~~~~~---~---~~~~~~~~~~Sa~~~~gv 179 (198)
T 3t1o_A 135 DVPIVIQVNKRDLPDALPVEM-VRAVV---D---PEGKFPVLEAVATEGKGV 179 (198)
T ss_dssp SSCEEEEEECTTSTTCCCHHH-HHHHH---C---TTCCSCEEECBGGGTBTH
T ss_pred CCCEEEEEEchhcccccCHHH-HHHHH---H---hcCCceEEEEecCCCcCH
Confidence 789999999999975321111 11111 1 112227789999999887
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=137.06 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=88.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+++|.+|||||||+|+|++..+.. ...+|.. .... +.... . .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~----~------- 75 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW---EYDPTLESTYRHQATIDD-----------------E----V------- 75 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS---CCCTTCCEEEEEEEEETT-----------------E----E-------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc---ccCCCCCceEEEEEEECC-----------------E----E-------
Confidence 45799999999999999999999987532 1222222 1111 11100 0 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
..+.+|||||... ......++..+|++++|+|+++.........++..+. ..+.|+++|+
T Consensus 76 ----~~~~l~Dt~G~~~------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 139 (196)
T 2atv_A 76 ----VSMEILDTAGQED------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139 (196)
T ss_dssp ----EEEEEEECCCCCC------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred ----EEEEEEECCCCCc------------ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEE
Confidence 3488999999875 1234566789999999999985221112223333332 3578999999
Q ss_pred cCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCC-CC
Q psy11743 209 NKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQ-PL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~-~~ 252 (551)
||+|+.+..++. +......... ..+.+.+||++|. |+
T Consensus 140 NK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 140 NKADLDHSRQVSTEEGEKLATEL-------ACAFYECSACTGEGNI 178 (196)
T ss_dssp ECGGGGGGCCSCHHHHHHHHHHH-------TSEEEECCTTTCTTCH
T ss_pred ECcccccccccCHHHHHHHHHHh-------CCeEEEECCCcCCcCH
Confidence 999997532110 1111111111 2367889999998 77
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=159.13 Aligned_cols=103 Identities=20% Similarity=0.235 Sum_probs=73.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.||||||+.. |...+...+..+|++|+|+|++. + ...+..+.+..+...+.+ +++|+
T Consensus 245 ~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~-g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVv 312 (611)
T 3izq_1 245 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCST-NAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 312 (611)
T ss_dssp CEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSH-HHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCC-CcccccchhhhHHHHHHHHHHHcCCCeEEEEE
Confidence 4689999999865 66677777899999999999985 2 345666777777766655 99999
Q ss_pred cCCCCCCH--HH---HHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMVDH--QQ---LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~~~--~~---~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|+.+. .. ....+...+..++. .....+++++||++|.|+.
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~--~~~~~~~i~vSA~tG~gI~ 360 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGF--FEDNINWVPISGFSGEGVY 360 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTC--CGGGCEEEECCTTTCTTTS
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcc--cccCccEEeeecccCCCcc
Confidence 99999862 21 22223333434443 2234688999999999983
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-16 Score=143.97 Aligned_cols=145 Identities=20% Similarity=0.185 Sum_probs=65.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|.+|||||||+|+|++..+. ....||..... .+..+. .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~-----------------~----------- 55 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN---STFISTIGIDFKIRTIELDG-----------------K----------- 55 (183)
T ss_dssp EEEEEEEECCCCC-------------------CHHHHHCEEEEEEEEEETT-----------------E-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCcccceeEEEEEEECC-----------------E-----------
Confidence 4578999999999999999999987642 12222222111 010000 0
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+.........++..+.. .+.|+++|+
T Consensus 56 ----~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (183)
T 2fu5_C 56 ----RIKLQIWDTAGQER-----------FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120 (183)
T ss_dssp ----EEEEEEEEC--------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ----EEEEEEEcCCCChh-----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 03489999999764 223334456899999999999852111222344444443 468999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+...+ .+.........+ .+++.+||++|.|+
T Consensus 121 nK~Dl~~~~~v~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 121 NKCDVNDKRQVSKERGEKLALDYG-------IKFMETSAKANINV 158 (183)
T ss_dssp EC--CCSCCCSCHHHHHHHHHHHT-------CEEEECCC---CCH
T ss_pred ECccCCccCcCCHHHHHHHHHHcC-------CeEEEEeCCCCCCH
Confidence 99999753211 011111111121 36788999999887
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-15 Score=146.28 Aligned_cols=147 Identities=11% Similarity=0.147 Sum_probs=84.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+|+|.+|||||||+|+|++..+... ..+..+.+... .+..+. .
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-----------------~------------- 60 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-SKSTIGVEFATRTLEIEG-----------------K------------- 60 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETT-----------------E-------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECC-----------------E-------------
Confidence 447899999999999999999999876321 11111111111 111100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC---CCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG---HDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++|+|+|+.+.........++..+.. .+.|+++|+||
T Consensus 61 --~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK 127 (223)
T 3cpj_B 61 --RIKAQIWDTAGQER-----------YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNK 127 (223)
T ss_dssp --EEEEEEECCTTTTT-----------TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_pred --EEEEEEEECCCccc-----------hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 02489999999764 122233456899999999999852211222344444442 36899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++. +........ ...+++.+||+++.|+
T Consensus 128 ~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 128 SDLAHLRAVPTEESKTFAQE-------NQLLFTETSALNSENV 163 (223)
T ss_dssp GGGGGGCCSCHHHHHHHHHH-------TTCEEEECCCC-CCCH
T ss_pred cccccccccCHHHHHHHHHH-------cCCEEEEEeCCCCCCH
Confidence 9997532111 111111111 1236788999999988
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-15 Score=140.76 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=78.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+.. ...+|+ +.+..... +. +..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~------~~----------~~~------------ 81 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE---SYTPTVFERYMVNLQ------VK----------GKP------------ 81 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEE------ET----------TEE------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCccceeEEEEEE------EC----------CEE------------
Confidence 34789999999999999999999877521 112222 22111000 00 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlN 209 (551)
..+.+|||||... +......++..+|++++|+|+.+ ..+... ..++..+.. .+.|+++|+|
T Consensus 82 ---~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~n 146 (214)
T 2j1l_A 82 ---VHLHIWDTAGQDD-----------YDRLRPLFYPDASVLLLCFDVTS-PNSFDNIFNRWYPEVNHFCKKVPIIVVGC 146 (214)
T ss_dssp ---EEEEEEEC--------------------------CEEEEEEEEETTC-HHHHHHHHHTHHHHHHHHCSSCCEEEEEE
T ss_pred ---EEEEEEECCCchh-----------hhHHHHHHhccCCEEEEEEECcC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 2488999999754 34445567789999999999985 221111 134444442 3689999999
Q ss_pred CCCCCCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+.+. .....+.. .....+.+.+||++|.|+
T Consensus 147 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~SA~~g~gi 196 (214)
T 2j1l_A 147 KTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR--SVGAVAYLECSARLHDNV 196 (214)
T ss_dssp CGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECBTTTTBSH
T ss_pred ChhhhccchhhhhhcccccCcccHHHHHHHHH--hcCCCEEEEecCCCCCCH
Confidence 999987543322110 00000111 112237789999999887
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-15 Score=137.94 Aligned_cols=150 Identities=19% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..++|+++|.+|||||||+|+|++.... ....|+.|.+....... + .+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------------~-----~~-------- 53 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFE-----------------Y-----NG-------- 53 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEE-----------------E-----TT--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEE-----------------e-----CC--------
Confidence 34579999999999999999999987531 22233333332211110 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.+|||||........ ........++ ..+|++++|+|+.+ ......++..+...+.|+++|+||+
T Consensus 54 ---~~~~l~Dt~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~piilv~nK~ 122 (188)
T 2wjg_A 54 ---EKFKVVDLPGVYSLTANS-----IDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANLLLALNKM 122 (188)
T ss_dssp ---EEEEEEECCCCSCCSSSS-----HHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTTTCCEEEEEECH
T ss_pred ---cEEEEEECCCcCcccccc-----HHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhcCCCEEEEEEhh
Confidence 348999999987532110 0112233333 35999999999974 2344566666777789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.....+..........++ .+.+.+||+++.++
T Consensus 123 Dl~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 123 DLAKSLGIEIDVDKLEKILG-------VKVVPLSAAKKMGI 156 (188)
T ss_dssp HHHHHTTCCCCHHHHHHHHT-------SCEEECBGGGTBSH
T ss_pred hccccccchHHHHHHHHHhC-------CCeEEEEecCCCCH
Confidence 98543211111111111122 36788999988887
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-15 Score=144.48 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=90.8
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE---EEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~---~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
.+...+|+|+|.+|||||||+|+|++..+. ....+|..... .+.+... ... + +.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~-~~~-~---------~~--------- 78 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFN---PKFITTVGIDFREKRVVYNAQ-GPN-G---------SS--------- 78 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCC---CEEEEEEEEEEEEEEEEEEC---------------------------
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCC---cCCCCceeEEEEEEEEEECCc-ccc-c---------cc---------
Confidence 345589999999999999999999987752 11222221100 0111000 000 0 00
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIR 205 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vi 205 (551)
.......+.||||||... +......++..+|++++|+|+.+.........++..+.. .+.|++
T Consensus 79 --~~~~~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pii 145 (217)
T 2f7s_A 79 --GKAFKVHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145 (217)
T ss_dssp --CCEEEEEEEEEEEESHHH-----------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEE
T ss_pred --cCceeEEEEEEECCCcHh-----------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 000013589999999542 566677888999999999999852111111233333332 468999
Q ss_pred EEEcCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.+...+ .+......... ..+++.+||+++.++
T Consensus 146 lV~NK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi 186 (217)
T 2f7s_A 146 LIGNKADLPDQREVNERQARELADKY-------GIPYFETSAATGQNV 186 (217)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHT-------TCCEEEEBTTTTBTH
T ss_pred EEEECCccccccccCHHHHHHHHHHC-------CCcEEEEECCCCCCH
Confidence 99999999753221 11111111111 236788999998887
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=139.31 Aligned_cols=147 Identities=22% Similarity=0.178 Sum_probs=84.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|+|||||+|+|++..+. ....+|+... +.. ...+ .+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~---~~~~~t~~~~----~~~-~~~~----------~~~-------------- 54 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP---TDYVPTVFDN----FSA-NVVV----------NGA-------------- 54 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------------CBC-CCC----------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCeeeee----EEE-EEEE----------CCE--------------
Confidence 4589999999999999999999988742 1112222110 000 0000 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~--~~~~vilVlNK 210 (551)
...+.++||||... +......++..+|++++|+|+.+ ..+... . .++..+.. .+.|+++|+||
T Consensus 55 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK 121 (182)
T 3bwd_D 55 -TVNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLIS-KASYENVSKKWIPELKHYAPGVPIVLVGTK 121 (182)
T ss_dssp ----CEEECCCC-CT-----------TTTTGGGGGTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTCCEEEEEEC
T ss_pred -EEEEEEEECCCChh-----------hhhhHHhhccCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 03477999999764 22233445688999999999985 222221 1 35555543 37899999999
Q ss_pred CCCCCHHHH-----------HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-----------MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-----------~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .+.........+ ..+.+.+||++|.|+
T Consensus 122 ~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi 168 (182)
T 3bwd_D 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIG------APAYIECSSKSQENV 168 (182)
T ss_dssp HHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT------CSEEEECCTTTCTTH
T ss_pred hhhhcCcccccccccCCCCCHHHHHHHHHHcC------CCEEEEEECCCCCCH
Confidence 999764432 111111111111 236788999999887
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=147.00 Aligned_cols=154 Identities=17% Similarity=0.116 Sum_probs=94.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++.........+++|.+.......-. + .
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~----------------~-----~---------- 51 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL----------------G-----N---------- 51 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEET----------------T-----T----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeC----------------C-----c----------
Confidence 46899999999999999999999854434456777766543311100 0 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHH---h--CCCCcEEEEEc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEAL---R--GHDDKIRIVLN 209 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l---~--~~~~~vilVlN 209 (551)
..+.+|||||...-.. . .+......++.++|++++|+|+.+ ..+... ..+..++ . ..+.|+++|+|
T Consensus 52 -~~l~i~Dt~G~~~~~~-----~-~~~~~~~~~~~~ad~vi~V~D~t~-~~s~~~l~~~~~~l~~l~~~~~~~piilv~N 123 (307)
T 3r7w_A 52 -MTLNLWDCGGQDVFME-----N-YFTKQKDHIFQMVQVLIHVFDVES-TEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123 (307)
T ss_dssp -EEEEEEEECCSHHHHH-----H-HHTTTHHHHHTTCSEEEEEEETTC-SCHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred -eEEEEEECCCcHHHhh-----h-hhhhHHHHHhccCCEEEEEEECCC-hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 3589999999753100 0 002345667789999999999986 332222 2333333 2 23789999999
Q ss_pred CCCCCCHHHHH---HHHHHHHHHcccccCCCCceEEEecccC
Q psy11743 210 KADMVDHQQLM---RVYGALMWSLGKVLQTPEVARVYIGSFW 248 (551)
Q Consensus 210 K~Dl~~~~~~~---~~~~~~~~~l~~l~~~~~~~~v~iSa~~ 248 (551)
|+|+.+.+... .........+....+.+..+.+.+||++
T Consensus 124 K~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 99999743221 0111111112221133346788999976
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=146.40 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=93.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|||||||+|+|++... .+...+.+|.+....... .+ +
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~-----------------~~-----~--------- 213 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFE-----------------DG-----Y--------- 213 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEE-----------------ET-----T---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEE-----------------ec-----C---------
Confidence 457999999999999999999999763 122233334333211100 00 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChH-HHHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDE-FRRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~-~~~~l~~l~~--~~~~vilVlNK 210 (551)
..+.++||||+.+......+.. ....+......+|++++|+|++... ++.. ...++..+.. .++|+++|+||
T Consensus 214 --~~~~l~Dt~G~~~~~~~~~~~~--~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 214 --FRYQIIDTPGLLDRPISERNEI--EKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp --EEEEEEECTTTSSSCSTTSCHH--HHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred --ceEEEEeCCCccccchhhhhHH--HHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3489999999976321111110 0122223345799999999987422 2322 2455555543 27999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+....++.+. ...... ...+++++||++|.|+
T Consensus 290 ~Dl~~~~~~~~~-~~~~~~-------~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 290 IDVADEENIKRL-EKFVKE-------KGLNPIKISALKGTGI 323 (357)
T ss_dssp TTTCCHHHHHHH-HHHHHH-------TTCCCEECBTTTTBTH
T ss_pred cccCChHHHHHH-HHHHHh-------cCCCeEEEeCCCCcCH
Confidence 999986554222 111111 2246789999999988
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-14 Score=149.06 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=72.9
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-cEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-KIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ |...+...+..+|++|+|+|+.+ +...+..+++..+...+. ++++|+||+|+.+
T Consensus 104 ~~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 104 RKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARY-GVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred ceEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 4589999999754 56667778899999999999996 677777777777666665 5899999999986
Q ss_pred --HHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 --HQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 --~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.. .+.+......++. .....+++++||++|.|+
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~--~~~~~~~i~vSA~~g~gi 211 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAF--KPTTMAFVPMSALKGDNV 211 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTC--CCSEEEEEECCTTTCTTT
T ss_pred ccHHHHHHHHHHHHHHHHHhCC--CccCceEEEEeccCCCCc
Confidence 2222 1222222222221 123467899999999998
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.7e-15 Score=138.02 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=84.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+++|.+|||||||+|+|++..+. ....+|+ +.+.....-+ +.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~----------------~~------------ 66 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP---TEYIPTAFDNFSAVVSVD----------------GR------------ 66 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEET----------------TE------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCcccceeEEEEEEC----------------CE------------
Confidence 45689999999999999999999987742 1222333 2221111000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-H-HHHHHHhC--CCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-R-RSIEALRG--HDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~-~~l~~l~~--~~~~vilVl 208 (551)
...+.+|||||...- ......++.++|++++|+|+.+ ..+... . .++..+.. .+.|+++|+
T Consensus 67 ---~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~ 131 (201)
T 2q3h_A 67 ---PVRLQLCDTAGQDEF-----------DKLRPLCYTNTDIFLLCFSVVS-PSSFQNVSEKWVPEIRCHCPKAPIILVG 131 (201)
T ss_dssp ---EEEEEEEECCCSTTC-----------SSSGGGGGTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCSSSCEEEEE
T ss_pred ---EEEEEEEECCCCHHH-----------HHHhHhhcCCCcEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 023779999998652 1122345689999999999985 222222 1 34444443 378999999
Q ss_pred cCCCCCCHHHHH-------------HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLM-------------RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~-------------~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..... +........+ ...+.+.+||++|.|+
T Consensus 132 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~Sa~~g~gi 182 (201)
T 2q3h_A 132 TQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI------KAASYIECSALTQKNL 182 (201)
T ss_dssp ECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH------TCSEEEECCTTTCTTH
T ss_pred ECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc------CCcEEEEEecCCCCCH
Confidence 999997532110 0011111111 1236788999999887
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-15 Score=140.01 Aligned_cols=114 Identities=18% Similarity=0.344 Sum_probs=74.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|+|||||+|+|++..+........+++... + ..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~----------------------~-----~~-------- 54 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----------------------Y-----DG-------- 54 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT----------------------G-----GG--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE----------------------e-----eC--------
Confidence 356899999999999999999999987532211222221100 1 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhc----cCEEEEEEeCC-CCCCChHHHHHHHHH-h------CCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAER----VDRIILLFDAH-KLDISDEFRRSIEAL-R------GHD 201 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~----aD~il~VvDa~-~~~~~~~~~~~l~~l-~------~~~ 201 (551)
..+.++||||+.. +......++.. +|++++|+|+. ..........++..+ . ..+
T Consensus 55 ---~~~~l~Dt~G~~~-----------~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (218)
T 1nrj_B 55 ---SGVTLVDFPGHVK-----------LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120 (218)
T ss_dssp ---SSCEEEECCCCGG-----------GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred ---ceEEEEECCCcHH-----------HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC
Confidence 4589999999864 23334444444 99999999998 423333333333332 2 257
Q ss_pred CcEEEEEcCCCCCCH
Q psy11743 202 DKIRIVLNKADMVDH 216 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~ 216 (551)
.|+++|+||+|+.+.
T Consensus 121 ~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 121 IDILIACNKSELFTA 135 (218)
T ss_dssp CCEEEEEECTTSTTC
T ss_pred CCEEEEEEchHhccc
Confidence 899999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-15 Score=151.67 Aligned_cols=186 Identities=18% Similarity=0.136 Sum_probs=117.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEec-CCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYD-EREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~-~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
+..|+++|.||||||||+|+|++..+ ..++..++||+.. ....+ +.++.++||||+.++.. .. ..+..+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~---~l~~~~~ 83 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SD---VLGHSMV 83 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TC---HHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-ch---hHHHHHH
Confidence 45899999999999999999999984 5688999999732 24456 88899999999987652 22 2333344
Q ss_pred hhhhhhccccCcc-------ccc----------ccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 382 NRFQCSLVNSPVL-------KGK----------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~----------~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
..+...+..+|++ .+. .+....++.++|+||+|+.-. ........+.+.+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~-----------~~~~~~~~~~l~~~~ 152 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGP-----------AKNVLPLIDEIHKKH 152 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSS-----------GGGGHHHHHHHHHHC
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCC-----------HHHHHHHHHHHHHhc
Confidence 4444555555542 121 122245778999999998211 111111233333333
Q ss_pred Hhccchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhc
Q psy11743 445 RKDMPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQ 521 (551)
Q Consensus 445 ~~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (551)
..+.+++.+ ++|.+ +++++.+.+ ..++.+ .+++.+.+
T Consensus 153 ~~~~~i~~vSA~~g~gv~~L~~~l~~-------------------------------~l~~~~----~~~~~~~~----- 192 (308)
T 3iev_A 153 PELTEIVPISALKGANLDELVKTILK-------------------------------YLPEGE----PLFPEDMI----- 192 (308)
T ss_dssp TTCCCEEECBTTTTBSHHHHHHHHHH-------------------------------HSCBCC----CSSCTTCC-----
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHH-------------------------------hCccCC----CCCCcccc-----
Confidence 222333333 44555 555444433 112221 34455555
Q ss_pred cCCCCCCCccchHHHHHHHHHhHhhhhh
Q psy11743 522 HHDFTKFQTLRPRLIEVADKMLAEDIAH 549 (551)
Q Consensus 522 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (551)
+|.+.++.+.+.++|++.+.+.+|||.
T Consensus 193 -td~~~~~~~~e~irek~~~~~~~eiP~ 219 (308)
T 3iev_A 193 -TDLPLRLLAAEIVREKAMMLTREEVPT 219 (308)
T ss_dssp -BCCCHHHHHHHHHHHHHHHTCCTTHHH
T ss_pred -cCCCHHHHHHHHHHHHHHhhhhhhcCC
Confidence 888888889999999999999999996
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-15 Score=150.46 Aligned_cols=152 Identities=22% Similarity=0.238 Sum_probs=94.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+.|+|+|.+|||||||+|+|++.+.. +...+.+|.+....+.. ++..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~------------------------------~~~~- 205 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVE------------------------------TDDG- 205 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEE------------------------------CSSS-
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEE------------------------------eCCC-
Confidence 467999999999999999999987632 23334444333322111 0100
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC---CCChHHHHHHHHHhC-----CCCcEEEE
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL---DISDEFRRSIEALRG-----HDDKIRIV 207 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~---~~~~~~~~~l~~l~~-----~~~~vilV 207 (551)
..+.++||||+.+.... ...+.......++++|++|+|+|+++. ........+...+.. ..+|+++|
T Consensus 206 -~~~~l~DtPG~i~~a~~----~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV 280 (342)
T 1lnz_A 206 -RSFVMADLPGLIEGAHQ----GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 280 (342)
T ss_dssp -CEEEEEEHHHHHHHTTC----TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBE
T ss_pred -ceEEEecCCCCcccccc----cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEE
Confidence 34899999997542111 111333444556889999999999741 222233445555553 47899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+||+|+....+..+.+ ...+.. ..+++.+||+++.++
T Consensus 281 ~NK~Dl~~~~e~~~~l---~~~l~~-----~~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 281 ANKMDMPEAAENLEAF---KEKLTD-----DYPVFPISAVTREGL 317 (342)
T ss_dssp EECTTSTTHHHHHHHH---HHHCCS-----CCCBCCCSSCCSSTT
T ss_pred EECccCCCCHHHHHHH---HHHhhc-----CCCEEEEECCCCcCH
Confidence 9999998754322221 112221 135678999999988
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=136.40 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=85.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+|+|.+|||||||+|+|++..+. ....+|+.. +.. +... +.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~-----------------~~------------ 67 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI---SEYDPNLEDTYSSEETVD-----------------HQ------------ 67 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC---SCCCTTCCEEEEEEEEET-----------------TE------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC---cccCCCccceeeEEEEEC-----------------CE------------
Confidence 4579999999999999999999998752 222233222 111 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC------CCCcEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG------HDDKIRI 206 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------~~~~vil 206 (551)
...+.+|||||.... .. +..++..+|++++|+|+.+.........++..+.. .+.|+++
T Consensus 68 ---~~~l~i~Dt~G~~~~-----------~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 132 (187)
T 3c5c_A 68 ---PVHLRVMDTADLDTP-----------RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL 132 (187)
T ss_dssp ---EEEEEEEECCC---C-----------CC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ---EEEEEEEECCCCCcc-----------hh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 024889999997641 11 13467899999999999852211222334444432 4789999
Q ss_pred EEcCCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecc-cCCCCC
Q psy11743 207 VLNKADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGS-FWDQPL 252 (551)
Q Consensus 207 VlNK~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa-~~g~~~ 252 (551)
|+||+|+.....+. +........++ .+.+.+|| ++|.|+
T Consensus 133 v~nK~Dl~~~~~v~~~~~~~~~~~~~-------~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 133 LGNKLDMAQYRQVTKAEGVALAGRFG-------CLFFEVSACLDFEHV 173 (187)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHHT-------CEEEECCSSSCSHHH
T ss_pred EEECcchhhcCccCHHHHHHHHHHcC-------CcEEEEeecCccccH
Confidence 99999996432110 11111111122 36788999 788877
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=138.16 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=74.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+...+|+|+|.+|||||||+|+|++..+. ....+|... +.....- .+ .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~---~~~~~t~~~~~~~~~~~------~~----------~------------ 73 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP---ETYVPTVFENYTACLET------EE----------Q------------ 73 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEEC------------------C------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC---CCcCCeeeeeEEEEEEE------CC----------E------------
Confidence 45689999999999999999999998753 222223222 1110000 00 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH--HHHHHHHHhC--CCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE--FRRSIEALRG--HDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~--~~~~l~~l~~--~~~~vilVl 208 (551)
...+.+|||||... +......++..+|++++|+|+.+ ..+.. ...++..+.. .+.|+++|+
T Consensus 74 ---~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~ 138 (214)
T 3q3j_B 74 ---RVELSLWDTSGSPY-----------YDNVRPLCYSDSDAVLLCFDISR-PETVDSALKKWRTEILDYCPSTRVLLIG 138 (214)
T ss_dssp ---EEEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-THHHHHHHTHHHHHHHHHCTTSEEEEEE
T ss_pred ---EEEEEEEECCCCHh-----------HHHHHHHHcCCCeEEEEEEECcC-HHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 03488999999753 23333445689999999999986 22222 2345555543 378999999
Q ss_pred cCCCCCC
Q psy11743 209 NKADMVD 215 (551)
Q Consensus 209 NK~Dl~~ 215 (551)
||+|+.+
T Consensus 139 nK~Dl~~ 145 (214)
T 3q3j_B 139 CKTDLRT 145 (214)
T ss_dssp ECGGGGG
T ss_pred EChhhcc
Confidence 9999964
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=150.60 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=102.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE--EEeCCC-ccc---cCCCCccccc-----------c
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA--VMYDER-EGS---VPFSPLDKFG-----------K 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~--i~~~~~-~~~---i~g~~~~~~~-----------~ 117 (551)
..|+|+|+|.+|||||||+|+|+|.++. +.+.+.+|..... ...... ... ..+..|.... .
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~--p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL--PRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS--CCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC--CCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999998863 2222222222221 111110 000 0111111111 0
Q ss_pred c---ccccccceeEEecCCCCccCeEEEeCCCCCCCccccccc--ccchHHHHHHHHhcc-CEEEEEEeCCCCCCChHHH
Q psy11743 118 F---GNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDR--GYDFTGVLEWFAERV-DRIILLFDAHKLDISDEFR 191 (551)
Q Consensus 118 ~---g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~--~~~~~~~~~~~~~~a-D~il~VvDa~~~~~~~~~~ 191 (551)
. +..+......+.+.++-...++||||||+.......... ...+...+..++..+ +++++|+|+.. ++...+.
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~~~ 186 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANSDA 186 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-CGGGCHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-ccchhHH
Confidence 0 011111111222222222579999999997532110010 012455666666544 56666778764 5555554
Q ss_pred -HHHHHHhCCCCcEEEEEcCCCCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 192 -RSIEALRGHDDKIRIVLNKADMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 192 -~~l~~l~~~~~~vilVlNK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+++.+...+.|+++|+||+|+.+... .... ...........+.+++.+||+++.++
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~----~~~~~~~l~~~~~~v~~~SA~~~~~i 245 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDV----LENKLLPLRRGYIGVVNRSQKDIDGK 245 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHH----HTTCSSCCTTCEEECCCCCHHHHHTT
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHH----HhCCcccccCCceEEEeCCccccccc
Confidence 477777778899999999999986432 1111 11111111223456788999988877
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-14 Score=144.61 Aligned_cols=138 Identities=13% Similarity=0.042 Sum_probs=94.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|.+|+|||||+|+|+.+ +.|.+....... +.+ .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~---------giTi~~~~~~~~----------------------~~~-----------~ 60 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK---------GTSSDITMYNND----------------------KEG-----------R 60 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE---------EEESSSEEEEEC----------------------SSS-----------S
T ss_pred EEEEECCCCCCHHHHHHHHHhC---------CEEEEeeEEEEe----------------------cCC-----------e
Confidence 8999999999999999999822 112222111000 001 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcE-EEEEc-CCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKI-RIVLN-KADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~v-ilVlN-K~Dl~~ 215 (551)
.+.+|||||+.+ |...+...+..+|++++|+| .. +...+..+++..+...+.|. ++|+| |+|+ +
T Consensus 61 ~i~iiDtPGh~~-----------f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 61 NMVFVDAHSYPK-----------TLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLLGFKHGIIALTRSDST-H 126 (370)
T ss_dssp EEEEEECTTTTT-----------CHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C
T ss_pred EEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C
Confidence 599999999865 56667778899999999999 64 78888888888887778887 99999 9999 6
Q ss_pred HHHHHHHHHHHHHHcccccCCCCceEEE--ecccC---CCCC
Q psy11743 216 HQQLMRVYGALMWSLGKVLQTPEVARVY--IGSFW---DQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~--iSa~~---g~~~ 252 (551)
.+...+........+... +....++++ +||++ +.|+
T Consensus 127 ~~~~~~~~~~i~~~l~~~-~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 127 MHAIDELKAKLKVITSGT-VLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp HHHHHHHHHHHHHHTTTS-TTTTCEEEECCCCTTSSSTTTTH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCceEEEecccccccCcCCCCH
Confidence 543322211111112111 223468899 99998 7776
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.3e-16 Score=165.43 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=99.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|+|+++|++|+|||||+|+|++.++... ..++.|.+.... . +..+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~----------------------~--------v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAF----------------------L--------VSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSC----------------------C--------BCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEE----------------------E--------EEeCCC
Confidence 468999999999999999999998775321 222222221100 0 000000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||+.. |.......+..+|++++|+|+.+ +...+..+.+..+...+.|+++|+||+|+.
T Consensus 52 --~~i~~iDTPGhe~-----------f~~~~~~~~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 52 --EKITFLDTPGHAA-----------FSAMRARGTQVTDIVILVVAADD-GVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp --SCCBCEECSSSCC-----------TTTSBBSSSBSBSSCEEECBSSS-CCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred --CEEEEEECCChHH-----------HHHHHHHHHccCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4589999999865 22222334578999999999997 888888888888888899999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccC--CCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQ--TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~--~~~~~~v~iSa~~g~~~ 252 (551)
+.... . ........+.... ....+++++||++|.|+
T Consensus 118 ~~~~~-~-v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 118 EADPE-K-VKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp TTSCC-S-SSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred ccchH-H-HHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 42110 0 0011112222111 12357889999999998
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-15 Score=143.65 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=87.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....+|+++|.+|||||||+|+|+...+ ......++.+....... ... + .
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~----------------~-----~------- 63 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNR----------------G-----P------- 63 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE-ETT----------------E-----E-------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE-ECC----------------E-----E-------
Confidence 4568999999999999999999665432 11122222222221110 000 0 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK 210 (551)
..+.+|||||... +......++.++|++++|+|+.+.........++..+.. .+.|+++|+||
T Consensus 64 ----~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK 128 (221)
T 3gj0_A 64 ----IKFNVWDTAGQEK-----------FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNK 128 (221)
T ss_dssp ----EEEEEEEECSGGG-----------TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred ----EEEEEEeCCChHH-----------HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 3489999999643 222344567899999999999852111122344444432 37899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.....+ ...... ....+.+.+||++|.|+
T Consensus 129 ~Dl~~~~~~~~-~~~~~~-------~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 129 VDIKDRKVKAK-SIVFHR-------KKNLQYYDISAKSNYNF 162 (221)
T ss_dssp TTSSSCSSCGG-GCCHHH-------HHTCEEEECBGGGTBTT
T ss_pred CccccccccHH-HHHHHH-------HcCCEEEEEeCCCCCCH
Confidence 99975321110 001111 11236788999999988
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=145.44 Aligned_cols=161 Identities=19% Similarity=0.295 Sum_probs=97.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcc------cc---CCCCcccccc--------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREG------SV---PFSPLDKFGK-------- 117 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~------~i---~g~~~~~~~~-------- 117 (551)
..|.|+|+|.+|||||||+|+|+|.++. +.+.+++|.+.+.+....... .+ ++..|..+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~l--p~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFL--PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCS--CCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcC--CCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 5689999999999999999999998863 445555554444333221100 00 1111111100
Q ss_pred ------cccccccceeEEecCCCCccCeEEEeCCCCCCCccc--ccccccchHHHHHHHHhccCEEEEEEeCCCCCCC-h
Q psy11743 118 ------FGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQ--RVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-D 188 (551)
Q Consensus 118 ------~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~--~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~-~ 188 (551)
.+..+......+.+.++....+++|||||+...... .-.....+...+..++.++|++++|+|+.+.+.. .
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~ 190 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS 190 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH
Confidence 012222233333344444467999999999863211 0111123466777889999999999987643332 3
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 189 EFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 189 ~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
....++..+...+.|+++|+||+|+.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 33566666667788999999999998643
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=154.66 Aligned_cols=143 Identities=19% Similarity=0.192 Sum_probs=96.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+.+ |...+..++..+|++|+|+|+.+ +...+....+..+...+.|+++|+||+|+...
T Consensus 71 ~~l~liDTPGh~d-----------F~~ev~~~l~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 71 YQLNFIDTPGHVD-----------FSYEVSRSLAACEGALLVVDAGQ-GVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp EEEEEEECCCCGG-----------GHHHHHHHHHHCSEEEEEEETTT-CCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEeeeccCcccc
Confidence 3589999999864 66677888999999999999996 67777766666666678999999999999763
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKA 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~ 296 (551)
. ..+........++ .+..+++++||++|.|+ ++|++.+... -+
T Consensus 139 ~-~~~v~~ei~~~lg----~~~~~vi~vSAktg~GI-------------~~Ll~~I~~~-------------------lp 181 (599)
T 3cb4_D 139 D-PERVAEEIEDIVG----IDATDAVRCSAKTGVGV-------------QDVLERLVRD-------------------IP 181 (599)
T ss_dssp C-HHHHHHHHHHHTC----CCCTTCEEECTTTCTTH-------------HHHHHHHHHH-------------------SC
T ss_pred c-HHHHHHHHHHHhC----CCcceEEEeecccCCCc-------------hhHHHHHhhc-------------------CC
Confidence 2 1111112111222 22335789999999887 4555544111 01
Q ss_pred CCCccccCCCcEEEEEee---cCCChhHHHHHHHhC
Q psy11743 297 PYEDADFDAKPTVMLVGQ---YSTGKTTFIRYLLER 329 (551)
Q Consensus 297 ~~~~~~~~~~~~~~~~g~---~~~gKss~~n~l~~~ 329 (551)
++. .....|.+..++.. +++|+.++++-+-|.
T Consensus 182 ~p~-~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 182 PPE-GDPEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp CCC-CCTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred Ccc-ccccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 111 12345666666654 889998888777776
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-15 Score=144.54 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=89.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|+. .+..... +. +.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~------~~----------~~------------- 76 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTVFDNYSANVM------VD----------GK------------- 76 (204)
Confidence 4578999999999999999999987642 11112221 1100000 00 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCC--CCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALRGH--DDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~~vilVlNK 210 (551)
...+.+|||||... +......++.++|++++|+|+.+....... ..++..+... +.|+++|+||
T Consensus 77 --~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK 143 (204)
T 3th5_A 77 --PVNLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143 (204)
Confidence 02467999999764 344555677899999999999852222222 2455555544 7899999999
Q ss_pred CCCCCHHHHHHHHHHH------HHHcccccCCCC-ceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGAL------MWSLGKVLQTPE-VARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~------~~~l~~l~~~~~-~~~v~iSa~~g~~~ 252 (551)
+|+.+.....+..... ......+..... .+++.+||++|.|+
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi 192 (204)
T 3th5_A 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192 (204)
Confidence 9998643211110000 000000111112 26778999999988
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=151.71 Aligned_cols=67 Identities=27% Similarity=0.291 Sum_probs=58.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.||||||+.+ |...+..++..+|++|+|+|+.+ +...+...++..+...+.|+++|+||+|+..
T Consensus 82 ~~i~liDTPG~~d-----------f~~~~~~~l~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 82 YLINLLDTPGHAD-----------FTEDTYRTLTAVDSALMVIDAAK-GVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred EEEEEEECCCchh-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 4589999999875 55567778899999999999997 7888888888888888999999999999974
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-14 Score=148.37 Aligned_cols=102 Identities=24% Similarity=0.212 Sum_probs=74.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ |...+...+..+|++|+|+|+.+ +...+..+++..+...+.| +++|+||+|+..
T Consensus 75 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 75 RHYSHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CEEEEEECCCSGG-----------GHHHHHHHHTTCSSEEEEEETTT-CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred eEEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 4589999999864 66777788899999999999996 7778888888888778888 889999999985
Q ss_pred HHHHHH----HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++..+ .....+..++. .....+++++||++|.++
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 143 DPELLDLVEMEVRDLLNQYEF--PGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS--CTTTSCEEECCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcc--cccCCCEEEccHHHhhhh
Confidence 332211 22233333332 112357899999887653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=128.80 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=90.9
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
.....+|+++|++|+|||||+|+|+|..+ ..+...++.+...... . ++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~-~------------------~~------------ 71 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF-E------------------VA------------ 71 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE-E------------------EE------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE-E------------------ec------------
Confidence 34567899999999999999999998762 2122222222211100 0 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH---hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA---ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVl 208 (551)
..+.++||||+..... .......+...+..++ ..+|.+++++|+.. +.+..+.++..++...+.|+++|.
T Consensus 72 -----~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 72 -----DGKRLVDLPGYGYAEV-PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp -----TTEEEEECCCCC-------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred -----CCEEEEECcCCccccc-CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEE
Confidence 2378999999864210 0000011233333344 57899999999985 556655566677777789999999
Q ss_pred cCCCCCCHHHHHH---HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMR---VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~---~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..+..+ .....+ .. .....+..++||+.+.++
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~---~~--~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAV---LA--FNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHH---GG--GCSCEEEEECBTTTTBSH
T ss_pred ecccCCCchhHHHHHHHHHHHH---Hh--cCCCCceEEEeecCCCCH
Confidence 9999998643322 111221 11 011346678999888776
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-14 Score=136.44 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=85.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+|+|.+|||||||+|+|++.........+.++.+.... +..+. ..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~-----------------~~------------ 86 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG-----------------ES------------ 86 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT-----------------EE------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECC-----------------ee------------
Confidence 4478999999999999999999986543222222222222111 11110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.++||+|.... +......+...+|++++|+|..+.........+...+.+ .+.|+++|+|
T Consensus 87 ---~~l~~~Dt~g~~~~----------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgN 153 (211)
T 2g3y_A 87 ---ATIILLDMWENKGE----------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153 (211)
T ss_dssp ---EEEEEECCTTTTHH----------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred ---eEEEEeecCCCcch----------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 23678999996430 111223345779999999999852111222334444443 3689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.....+..... ..+.... ..+.+.+||++|.|+
T Consensus 154 K~DL~~~r~v~~~e~-~~~a~~~-----~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 154 KSDLVRCREVSVSEG-RACAVVF-----DCKFIETSAAVQHNV 190 (211)
T ss_dssp CTTCGGGCCSCHHHH-HHHHHHH-----TCEEEECBTTTTBSH
T ss_pred ChHHhcCceEeHHHH-HHHHHHc-----CCEEEEEeCCCCCCH
Confidence 999964321111011 1111111 136788999999988
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-15 Score=163.16 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=60.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC----CC--ChHHHHHHHHHhCCCCc-EEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL----DI--SDEFRRSIEALRGHDDK-IRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~----~~--~~~~~~~l~~l~~~~~~-vilVlN 209 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+... ++ ..+..+.+..+...+.| +|+|+|
T Consensus 255 ~~i~iiDTPGh~~-----------f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviN 323 (592)
T 3mca_A 255 KIYEIGDAPGHRD-----------FISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVN 323 (592)
T ss_dssp ----CCEEESSSE-----------EEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEE
T ss_pred eEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEe
Confidence 4689999999875 222223345789999999999852 23 56666777777777776 999999
Q ss_pred CCCCCC--HHHHHHHH---HHHH-HHcccccCCCCceEEEecccCCCCCc
Q psy11743 210 KADMVD--HQQLMRVY---GALM-WSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 210 K~Dl~~--~~~~~~~~---~~~~-~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
|+|+.+ ........ ...+ ..++. .....+++++||++|.|+.
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~--~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGF--KTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCC--CGGGEEEEEECSSSCSSSC
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCC--CccceEEEEEecccCcccc
Confidence 999975 33222221 1111 11222 2224578999999999984
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=135.59 Aligned_cols=124 Identities=14% Similarity=0.235 Sum_probs=82.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|+|||||+|+|++..+..+...++.|.+........ .+
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------------~~---------- 86 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR----------------------AG---------- 86 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE----------------------TT----------
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee----------------------CC----------
Confidence 4789999999999999999999988654444444443332221110 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCC-C----CcEEEEE
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGH-D----DKIRIVL 208 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-~----~~vilVl 208 (551)
..+.+|||||+.+... .. ..+.+.+..++ ..+|++|+|+|+....++..+..++..+... + .|+++|+
T Consensus 87 -~~l~iiDTpG~~~~~~--~~--~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~ 161 (270)
T 1h65_A 87 -FTLNIIDTPGLIEGGY--IN--DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 161 (270)
T ss_dssp -EEEEEEECCCSEETTE--EC--HHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred -eEEEEEECCCCCCCcc--ch--HHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEE
Confidence 3589999999975321 11 11233333332 4799999998886435666666777766532 2 6899999
Q ss_pred cCCCCCCH
Q psy11743 209 NKADMVDH 216 (551)
Q Consensus 209 NK~Dl~~~ 216 (551)
||+|+.++
T Consensus 162 nK~Dl~~~ 169 (270)
T 1h65_A 162 THAQFSPP 169 (270)
T ss_dssp ECCSCCCG
T ss_pred ECcccCCc
Confidence 99999864
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-16 Score=149.28 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=81.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
+..++|+|+|.+|||||||+|+|++..+.. ...+..+.+.... +..+. .
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~------------ 80 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDG-----------------K------------ 80 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETT-----------------E------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECC-----------------E------------
Confidence 345799999999999999999999876531 1111112222111 11110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC---CCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH---DDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~~vilVlN 209 (551)
...+.+|||||...- ......++..+|++++|+|+.+.........++..+... +.|+++|+|
T Consensus 81 ---~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n 146 (199)
T 3l0i_B 81 ---TIKLQIWDTAGQERF-----------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146 (199)
T ss_dssp ---EEEEEEECCTTCTTC-----------CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-C
T ss_pred ---EEEEEEEECCCcHhH-----------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 024899999997642 112233568899999999998622222334555555543 689999999
Q ss_pred CCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+...... ......... ..+++.+||++|.|+
T Consensus 147 K~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 147 KCDLTTKKVVDYTTAKEFADSL-------GIPFLETSAKNATNV 183 (199)
T ss_dssp CSSCC--CCCCSCC-CHHHHTT-------TCCBCCCCC---HHH
T ss_pred CccCCccccCCHHHHHHHHHHc-------CCeEEEEECCCCCCH
Confidence 999975422100 011111111 235677999888776
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-14 Score=131.92 Aligned_cols=120 Identities=18% Similarity=0.319 Sum_probs=72.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...++|+++|.+|||||||+|+|++..+........+++... + ..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~----------------------~-----~~-------- 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----------------------Y-----DG-------- 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C----------------------C-----CC--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee----------------------e-----cC--------
Confidence 356899999999999999999999987532111111221100 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC-CCCCChHHHHHHHHH-h------CCCCcEE
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFRRSIEAL-R------GHDDKIR 205 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~-~~~~~~~~~~~l~~l-~------~~~~~vi 205 (551)
..+.+|||||...... .+...+...+..+|++++|+|+. ..........++..+ . ..+.|++
T Consensus 91 ---~~~~l~Dt~G~~~~~~-------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 160 (193)
T 2ged_A 91 ---SGVTLVDFPGHVKLRY-------KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 160 (193)
T ss_dssp ---TTCSEEEETTCCBSSC-------CHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEE
T ss_pred ---CeEEEEECCCCchHHH-------HHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEE
Confidence 4589999999875221 13444445556799999999997 311111111222222 1 2478999
Q ss_pred EEEcCCCCCCHHH
Q psy11743 206 IVLNKADMVDHQQ 218 (551)
Q Consensus 206 lVlNK~Dl~~~~~ 218 (551)
+|+||+|+.+...
T Consensus 161 lv~nK~Dl~~~~~ 173 (193)
T 2ged_A 161 IACNKSELFTARP 173 (193)
T ss_dssp EEEECTTSTTCCC
T ss_pred EEEEchHhcCCCC
Confidence 9999999986443
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=133.98 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..++|+++|.+|+|||||+|+|++.+...+...++.|.......... .+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------------~~--------- 83 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM----------------------GG--------- 83 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE----------------------TT---------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE----------------------CC---------
Confidence 45789999999999999999999988644444444443332221110 01
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRIV 207 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vilV 207 (551)
..+.+|||||+.+.... ...+.+.++.++ .++|++++|+|+....++..+..+++.+... .+|+++|
T Consensus 84 --~~l~liDTpG~~~~~~~----~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 157 (262)
T 3def_A 84 --FTINIIDTPGLVEAGYV----NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLV 157 (262)
T ss_dssp --EEEEEEECCCSEETTEE----CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred --eeEEEEECCCCCCcccc----hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEE
Confidence 35899999999763211 112333343333 3899999998887545666666777766542 2489999
Q ss_pred EcCCCCCC
Q psy11743 208 LNKADMVD 215 (551)
Q Consensus 208 lNK~Dl~~ 215 (551)
+||+|+.+
T Consensus 158 ~nK~Dl~~ 165 (262)
T 3def_A 158 LTHAQFSP 165 (262)
T ss_dssp EECTTCCC
T ss_pred EeCcccCC
Confidence 99999963
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-14 Score=132.43 Aligned_cols=116 Identities=19% Similarity=0.268 Sum_probs=73.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|||||||+|+|++..+. ....||.......... +. +.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~-----~~----------~~-------------- 53 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTASFE-----ID----------TQ-------------- 53 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEE-----CS----------SC--------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEE-----EC----------CE--------------
Confidence 4578999999999999999999998753 2222332221110000 00 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlNK 210 (551)
...+.+|||||... +......++..+|++++|+|+.+ ..+... ..++..+.. .+.|+++|+||
T Consensus 54 -~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK 120 (184)
T 1m7b_A 54 -RIELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISR-PETLDSVLKKWKGEIQEFCPNTKMLLVGCK 120 (184)
T ss_dssp -EEEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTCEEEEEEEC
T ss_pred -EEEEEEEECCCChh-----------hhhhHHhhcCCCcEEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEc
Confidence 03489999999753 22223345689999999999985 222121 234444443 47899999999
Q ss_pred CCCCC
Q psy11743 211 ADMVD 215 (551)
Q Consensus 211 ~Dl~~ 215 (551)
+|+.+
T Consensus 121 ~Dl~~ 125 (184)
T 1m7b_A 121 SDLRT 125 (184)
T ss_dssp GGGGG
T ss_pred chhhc
Confidence 99974
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=143.67 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=97.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|..++|||||+|+|+|........ .++.|.+.-.. ....... ..+ .|.... .++
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~-~~~--------~y~~~~-------~~~ 73 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCP-NCG--------RYSTSP-------VCP 73 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECT-TTC--------CEESSS-------BCT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeeccccc-ccc--------cccccc-------ccc
Confidence 4689999999999999999999764321111 12223222110 0000000 000 000000 000
Q ss_pred ---CCC--ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCC-CcEE
Q psy11743 133 ---SPV--LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHD-DKIR 205 (551)
Q Consensus 133 ---~~~--l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~-~~vi 205 (551)
..+ ...+.+|||||+.+ |...+...+..+|++++|+|+.+ +. ..+..+.+..+...+ .|++
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~qt~e~l~~~~~~~~~~ii 141 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANE-PCPRPQTREHLMALQIIGQKNII 141 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTS-CSSCHHHHHHHHHHHHHTCCCEE
T ss_pred ccCcccccccEEEEEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCC-CCCChhHHHHHHHHHHcCCCcEE
Confidence 000 14589999999753 56666777789999999999996 54 566666655555434 5799
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 206 IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 206 lVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+||+|+.+.+.....+......+... .....+++++||++|.|+
T Consensus 142 vviNK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi 187 (410)
T 1kk1_A 142 IAQNKIELVDKEKALENYRQIKEFIEGT-VAENAPIIPISALHGANI 187 (410)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSH
T ss_pred EEEECccCCCHHHHHHHHHHHHHHHHhc-CcCCCeEEEeeCCCCCCH
Confidence 9999999998654322222211111110 123468899999998887
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=139.02 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=104.0
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
.+.++|| ... +......++.++|++++|+|++++..+.. ...++..++..+.|+++|+||+|+.+.
T Consensus 64 ~~~iwD~--qer-----------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~ 130 (301)
T 1u0l_A 64 SGVIENV--LHR-----------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE 130 (301)
T ss_dssp SEEEEEE--CCC-----------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred eEEEEEE--ccc-----------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc
Confidence 5889999 222 12223346789999999999997443433 345666666678999999999999876
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKA 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~ 296 (551)
..+.+ .......... . .+++.+||++|.|+ ++++..+
T Consensus 131 ~~v~~-~~~~~~~~~~---~--~~~~~~SAktg~gv-------------~~lf~~l------------------------ 167 (301)
T 1u0l_A 131 DDLRK-VRELEEIYSG---L--YPIVKTSAKTGMGI-------------EELKEYL------------------------ 167 (301)
T ss_dssp HHHHH-HHHHHHHHTT---T--SCEEECCTTTCTTH-------------HHHHHHH------------------------
T ss_pred hhHHH-HHHHHHHHhh---h--CcEEEEECCCCcCH-------------HHHHHHh------------------------
Confidence 54311 1111111111 1 46788999999887 4444433
Q ss_pred CCCccccCCCcEEEEEeecCCChhHHHHHHHhCCCC--c-cccc--CCCcccceEEEEecCCCccccCCceeecCCCC
Q psy11743 297 PYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFP--G-IHIG--PEPTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 297 ~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~--~-~~v~--~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
..-.++++|++|+||||++|.|.+...+ | +.+. ....+|+......-.....++||||+...+..
T Consensus 168 --------~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~ 237 (301)
T 1u0l_A 168 --------KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEIN 237 (301)
T ss_dssp --------SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCC
T ss_pred --------cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCC
Confidence 1347899999999999999999987421 1 1110 12223432111111345678899998876643
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-14 Score=150.90 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=70.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCCh-------HHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISD-------EFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~-------~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+.+ +... +..+.+..+...+.| +++|+
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~~sf~~~~qt~~~~~~~~~~~v~~iivvi 152 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGV-GEFEAGISKDGQTREHALLAFTLGVRQLIVAV 152 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSH-HHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCc-CccccccCcchhHHHHHHHHHHcCCCeEEEEE
Confidence 4599999999864 67777788899999999999985 3222 455555556666776 89999
Q ss_pred cCCCCCC--HHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMVD--HQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~~--~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|+.+ .+.. .+.+...+..++. .....+++++||++|.++.
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~--~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGY--NPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTC--CGGGCCEEECCTTTCBTTT
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCC--CccCceEEEeecccCcCcc
Confidence 9999983 3322 1222223333332 1113578999999999883
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-14 Score=134.22 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+++|.+|||||||+|+|++..+. ....+|.......... +.+ .
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~-----~~~----------~------------- 74 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTASFE-----IDT----------Q------------- 74 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEE-----SSS----------S-------------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCccceeEEEEEE-----ECC----------E-------------
Confidence 34579999999999999999999998753 2222332221110000 000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH--HHHHHHHhC--CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF--RRSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~--~~~l~~l~~--~~~~vilVlN 209 (551)
...+.+|||||... +......++..+|++++|+|+.+ ..+... ..++..+.. .+.|+++|+|
T Consensus 75 --~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~D~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~n 140 (205)
T 1gwn_A 75 --RIELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISR-PETLDSVLKKWKGEIQEFCPNTKMLLVGC 140 (205)
T ss_dssp --EEEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTCEEEEEEE
T ss_pred --EEEEEEEeCCCcHh-----------hhHHHHhhccCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEEe
Confidence 03489999999753 22223345689999999999985 222111 234444443 4789999999
Q ss_pred CCCCCC
Q psy11743 210 KADMVD 215 (551)
Q Consensus 210 K~Dl~~ 215 (551)
|+|+.+
T Consensus 141 K~Dl~~ 146 (205)
T 1gwn_A 141 KSDLRT 146 (205)
T ss_dssp CGGGGG
T ss_pred chhhcc
Confidence 999974
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-14 Score=145.91 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=72.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
..+.+|||||+.+ |...+...+..+|++++|+|+.+ +...+..+.+..+...+.| +++|+||+|+.+
T Consensus 66 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 66 RHYAHTDCPGHAD-----------YVKNMITGTAPLDGCILVVAAND-GPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CEEEEEECSSHHH-----------HHHHHHHTSSCCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred eEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 4589999999854 66677777899999999999996 7777777777777777888 689999999985
Q ss_pred HHHHH----HHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 216 HQQLM----RVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 216 ~~~~~----~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
.++.. +.....+...+. .....+++++||++|.+
T Consensus 134 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 134 DSEMVELVELEIRELLTEFGY--KGEETPIIVGSALCALE 171 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS--CTTTSCEEECCHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCC--CcccCcEEEeehhhccc
Confidence 32221 122233333332 11235789999988765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=128.27 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=83.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+|+|.+|||||||+|+|++.... ......+|.........-. +.+ ..+ .
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~-~~~~~~~t~g~~~~~~~~~----~~~-------~~~-------------~-- 54 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKS-DLGMQSATVGIDVKDWPIQ----IRD-------KRK-------------R-- 54 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC----------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCc-cCCCcceeccEEeEEeeec----ccc-------CCC-------------C--
Confidence 368999999999999999999985311 1111222322111000000 000 000 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC--hHHHHHHHHHhC--CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS--DEFRRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~--~~~~~~l~~l~~--~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|.++ +.. .....++..+.. .+.|+++|.||+
T Consensus 55 ~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~~s~~~~~~~~~~~~~~~~~~piilv~nK~ 122 (184)
T 2zej_A 55 DLVLNVWDFAGREE-----------FYSTHPHFMTQRALYLAVYDLSK-GQAEVDAMKPWLFNIKARASSSPVILVGTHL 122 (184)
T ss_dssp -CEEEEEEECSHHH-----------HHTTSHHHHHHSEEEEEEEEGGG-CHHHHHTHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred ceEEEEEecCCCHH-----------HHHhhHHHccCCcEEEEEEeCCc-chhHHHHHHHHHHHHHhhCCCCcEEEEEECC
Confidence 03488999999743 23333456788999999999985 211 122344444332 368999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCC-CceEEEecccCCC-CC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTP-EVARVYIGSFWDQ-PL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~-~~~~v~iSa~~g~-~~ 252 (551)
|+.+..............+..-.+.+ ..+.+.+||+++. ++
T Consensus 123 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 165 (184)
T 2zej_A 123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDAL 165 (184)
T ss_dssp GGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHH
T ss_pred CcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhH
Confidence 99876543221111111222111211 1136889998875 44
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=140.71 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=86.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+.|+|+|.+|+|||||+|+|+|... .+...+.+|.+....-.. +++
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~------------------------------~~g-- 225 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIP------------------------------INN-- 225 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEE------------------------------ETT--
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEE------------------------------ECC--
Confidence 45699999999999999999999874 334445555444221110 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC--CChHH---HHHHHHHhCCCCcEEEEEcC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD--ISDEF---RRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~--~~~~~---~~~l~~l~~~~~~vilVlNK 210 (551)
..+.++||||+........- +....+...+..+|++++|+|+++.. ..... .+++..+...+.|+++|+||
T Consensus 226 -~~v~l~DT~G~i~~lp~~lv---e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK 301 (364)
T 2qtf_A 226 -RKIMLVDTVGFIRGIPPQIV---DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK 301 (364)
T ss_dssp -EEEEEEECCCBCSSCCGGGH---HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC
T ss_pred -EEEEEEeCCCchhcCCHHHH---HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC
Confidence 34789999997542111110 11223445678999999999998521 11111 12333333357899999999
Q ss_pred CCCCCHH--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQ--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.. +...........+. .+.++++++||+++.|+
T Consensus 302 ~Dl~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 302 IDKINGDLYKKLDLVEKLSKELY----SPIFDVIPISALKRTNL 341 (364)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHC----SCEEEEEECBTTTTBSH
T ss_pred CCCCCchHHHHHHHHHHHHHHhc----CCCCcEEEEECCCCcCH
Confidence 9998642 11111111111120 12335688999998887
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=143.78 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=72.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHHHHHHHHHhCCCC-cEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEFRRSIEALRGHDD-KIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~-~vilVl 208 (551)
..+.+|||||+.+ |...+..++..+|++++|+|+.+ + ...+..+.+..+...+. ++++|+
T Consensus 84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 4599999999875 66677778899999999999996 5 44466666666666665 589999
Q ss_pred cCCCCCC----HHH---HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVD----HQQ---LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~----~~~---~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+ .+. ..+.+...+..++. .....+++++||++|.|+
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF--NTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTC--CCTTCEEEECBTTTTBTT
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCC--CcCCceEEEeecccCccc
Confidence 9999986 221 12223333333332 112367899999999987
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=151.21 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=80.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC-CCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-EPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~-~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..|+|+|+|++|+|||||+|+|++..+. ...+ +.|.+. ...+.+... ....+..... +... ..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~-~~~~~~~~~~---~~v~-~~-------- 68 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVI-EGICGDFLKK---FSIR-ET-------- 68 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHH-HHHSCGGGGG---CGGG-GT--------
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechh-hhhccccccc---cccc-cc--------
Confidence 4689999999999999999999987642 1112 112111 111110000 0000000000 0000 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
...++||||||+.+- .......+..+|++|+|+|+.+ +...+..+.+..+...+.|+++|+||+|
T Consensus 69 ---~~~i~liDTPGhe~F-----------~~~~~r~~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~~vPiIVViNKiD 133 (594)
T 1g7s_A 69 ---LPGLFFIDTPGHEAF-----------TTLRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYRTPFVVAANKID 133 (594)
T ss_dssp ---CCEEEEECCCTTSCC-----------TTSBCSSSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred ---cCCEEEEECCCcHHH-----------HHHHHHHHhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCeEEEEecccc
Confidence 024899999998752 1112234578999999999997 7888888888888888999999999999
Q ss_pred CCC
Q psy11743 213 MVD 215 (551)
Q Consensus 213 l~~ 215 (551)
+.+
T Consensus 134 l~~ 136 (594)
T 1g7s_A 134 RIH 136 (594)
T ss_dssp GST
T ss_pred ccc
Confidence 964
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.9e-14 Score=131.89 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=82.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.++|+++|.+|||||||+|+|++.........+.++.+.... +..+. ..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~------------- 55 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDG-----------------ES------------- 55 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETT-----------------EE-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECC-----------------eE-------------
Confidence 478999999999999999999986542222222122222111 11110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||+|...... + ....+...+|++++|+|..+.........+...+. ..+.|+++|.||
T Consensus 56 --~~l~~~Dt~~~~~~~~--------~--~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK 123 (192)
T 2cjw_A 56 --ATIILLDMWENKGENE--------W--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123 (192)
T ss_dssp --EEEEEECCCCC----C--------T--TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred --EEEEEEEeccCcchhh--------h--HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEec
Confidence 2367899999754110 1 11234567999999999985211112223333332 236899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+... ....+.... ..+.+.+||++|.|+
T Consensus 124 ~Dl~~~r~v~~~-~~~~~a~~~-----~~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 124 SDLVRXREVSVS-EGRAXAVVF-----DXKFIETSAAVQHNV 159 (192)
T ss_dssp TTCGGGCCSCHH-HHHHHHHHT-----TCEEEECBTTTTBSH
T ss_pred hhhhccccccHH-HHHHHHHHh-----CCceEEeccccCCCH
Confidence 998643211110 111111111 235688999999988
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=143.44 Aligned_cols=166 Identities=20% Similarity=0.195 Sum_probs=89.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+++|..++|||||+|+|+|........ .++.|.+.-.. ....... ..+ .|.... .+
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~-~~~--------~y~~~~-------~~ 70 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCP-QCG--------TYTTKP-------RC 70 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECT-TTC--------CEESSS-------BC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccccccc-ccc--------cccccc-------cc
Confidence 45789999999999999999999764321111 12223221110 0000000 000 000000 00
Q ss_pred CC---C--CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCC-CcE
Q psy11743 132 NS---P--VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHD-DKI 204 (551)
Q Consensus 132 ~~---~--~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~-~~v 204 (551)
+. . ....+.+|||||+.+ |...+...+..+|++++|+|+.+ +. ..+..+.+..+...+ .|+
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~qt~e~l~~~~~l~~~~i 138 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHET-----------LMATMLSGASLMDGAILVIAANE-PCPQPQTKEHLMALEILGIDKI 138 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTS-CSSCHHHHHHHHHHHHTTCCCE
T ss_pred cccCcccccccEEEEEECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCC-CCCCchhHHHHHHHHHcCCCeE
Confidence 00 0 014599999999743 55556666678899999999996 54 566666666655444 479
Q ss_pred EEEEcCCCCCCHHHH---HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQL---MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~---~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|+||+|+.+.+.. .+.+...+. +. .....+++++||++|.|+
T Consensus 139 ivv~NK~Dl~~~~~~~~~~~~i~~~l~--~~--~~~~~~~i~vSA~~g~gi 185 (408)
T 1s0u_A 139 IIVQNKIDLVDEKQAEENYEQIKEFVK--GT--IAENAPIIPISAHHEANI 185 (408)
T ss_dssp EEEEECTTSSCTTTTTTHHHHHHHHHT--TS--TTTTCCEEEC------CH
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHh--hc--CCCCCeEEEeeCCCCCCH
Confidence 999999999864321 111222211 11 123457899999998887
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=132.09 Aligned_cols=146 Identities=13% Similarity=0.140 Sum_probs=96.3
Q ss_pred HHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHH--HHHHHHHHHHcccccCCCCceEEE
Q psy11743 167 WFAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQL--MRVYGALMWSLGKVLQTPEVARVY 243 (551)
Q Consensus 167 ~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~--~~~~~~~~~~l~~l~~~~~~~~v~ 243 (551)
.++.++|++++|+|++++..+... ..++..+...++|+++|+||+|+.++.++ .+.+...+..++ .++++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g-------~~~~~ 147 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG-------YDVLK 147 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT-------CEEEE
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC-------CeEEE
Confidence 467999999999999974445443 45666666778999999999999976531 122222222222 36889
Q ss_pred ecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHH
Q psy11743 244 IGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFI 323 (551)
Q Consensus 244 iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~ 323 (551)
+||++|.|+ ++|+..+ ..-.++++|++|+||||++
T Consensus 148 ~SA~~g~gi-------------~~L~~~l--------------------------------~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 148 VSAKTGEGI-------------DELVDYL--------------------------------EGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp CCTTTCTTH-------------HHHHHHT--------------------------------TTCEEEEECSTTSSHHHHH
T ss_pred EECCCCCCH-------------HHHHhhc--------------------------------cCcEEEEECCCCCCHHHHH
Confidence 999999887 4454443 2347899999999999999
Q ss_pred HHHHhCCCCcccccCC-------CcccceEEEEecCCCccccCCceeecCC
Q psy11743 324 RYLLERDFPGIHIGPE-------PTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 324 n~l~~~~~~~~~v~~~-------~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
|.|. ..- ...+.. ..+|+......-.....++||||+....
T Consensus 183 n~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~ 230 (302)
T 2yv5_A 183 SRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVE 230 (302)
T ss_dssp HHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCC
T ss_pred HHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCc
Confidence 9999 631 122222 2244433222223456788999987544
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-14 Score=155.64 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=94.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.|+|+++|++++|||||+++|++..+. ....++.|.+.... . + .+.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~-------------~---v------~~~~--------- 50 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAY-------------H---V------ETEN--------- 50 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCC-------------C---C------CTTS---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEE-------------E---E------EECC---------
Confidence 4689999999999999999999986542 11112222211000 0 0 0011
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||+.+- .......+..+|++++|+|+.+ +...+..+.+..+...+.|+++|+||+|+.
T Consensus 51 --~~i~~iDTPGhe~f-----------~~~~~~~~~~aD~aILVVda~~-g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 51 --GMITFLDTPGHAAF-----------TSMRARGAQATDIVVLVVAADD-GVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp --SCCCEECCCTTTCC-----------TTSBCSSSBSCSSEEEEEETTT-BSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred --EEEEEEECCCcHHH-----------HHHHHHHHhhCCEEEEEeeccc-CccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 45899999998652 2122234578999999999986 666666677777777889999999999997
Q ss_pred CHHHHHHHHHHHHHHcccccCC--CCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQT--PEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~--~~~~~v~iSa~~g~~~ 252 (551)
.... .+ ....+...+.+... ...+++++||++|.|+
T Consensus 117 ~~~~-~~-v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 117 EADP-DR-VKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp TTCC-CC-TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred ccCH-HH-HHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 5210 00 00000001111111 1258899999999998
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=145.87 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=61.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+.+ +. ..+..+.+..+...+.| +++|+
T Consensus 121 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~e~sf~~~~qt~e~l~~~~~~~vp~iivvi 188 (467)
T 1r5b_A 121 RRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARR-GEFEAGFERGGQTREHAVLARTQGINHLVVVI 188 (467)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECST-THHHHTTSTTCCHHHHHHHHHHTTCSSEEEEE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCc-CccccccCCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 4689999999865 55566677899999999999986 42 13445555666667787 99999
Q ss_pred cCCCCCC----HHHHH---HHHHHHHHHc-ccccC-CCCceEEEecccCCCCC
Q psy11743 209 NKADMVD----HQQLM---RVYGALMWSL-GKVLQ-TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~----~~~~~---~~~~~~~~~l-~~l~~-~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.. .+... ..+...+..+ +. . ....+++++||++|.|+
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~--~~~~~~~~i~vSA~~g~~i 239 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGY--NSKTDVKYMPVSAYTGQNV 239 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCC--CHHHHEEEEECBTTTTBTT
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCC--CccCCceEEeccccccccc
Confidence 9999964 22211 1222222222 22 1 01457899999999998
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-13 Score=144.81 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=72.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+.+ |...+..++..+|++|+|+|+.+ +...+....+..+...+.|+++|+||+|+...
T Consensus 73 ~~inliDTPGh~d-----------F~~ev~r~l~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 73 YKLHLIDTPGHVD-----------FSYEVSRALAACEGALLLIDASQ-GIEAQTVANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp EEEEEECCCCSGG-----------GHHHHHHHHHTCSEEEEEEETTT-BCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCcHh-----------HHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHCCCCEEEEEeccCcccc
Confidence 3588999999965 66677788899999999999996 77777766666666778999999999999753
Q ss_pred HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. ..+........+ +....+++++||++|.|+
T Consensus 141 ~-~~~v~~el~~~l----g~~~~~vi~vSAktg~GI 171 (600)
T 2ywe_A 141 D-VDRVKKQIEEVL----GLDPEEAILASAKEGIGI 171 (600)
T ss_dssp C-HHHHHHHHHHTS----CCCGGGCEECBTTTTBSH
T ss_pred C-HHHHHHHHHHhh----CCCcccEEEEEeecCCCc
Confidence 2 112222221112 223335789999999887
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-13 Score=136.04 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=91.2
Q ss_pred HHHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHH---HHHHHHHHHHHcccccCCCCceEE
Q psy11743 167 WFAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQ---LMRVYGALMWSLGKVLQTPEVARV 242 (551)
Q Consensus 167 ~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~---~~~~~~~~~~~l~~l~~~~~~~~v 242 (551)
..+.++|.+++|+|++.+.++... .+++..+...++|+++|+||+|+.++.+ ..+.+...+..+|. +++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~-------~v~ 154 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY-------DVY 154 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC-------CEE
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC-------eEE
Confidence 468999999999999964554432 2333344567899999999999998643 12333333333332 678
Q ss_pred EecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHH
Q psy11743 243 YIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTF 322 (551)
Q Consensus 243 ~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~ 322 (551)
++||.++.++ ++|+... ...+++++|++|+||||+
T Consensus 155 ~~sa~~~~g~-------------~~L~~~~--------------------------------~G~~~~lvG~sG~GKSTL 189 (307)
T 1t9h_A 155 LTSSKDQDSL-------------ADIIPHF--------------------------------QDKTTVFAGQSGVGKSSL 189 (307)
T ss_dssp ECCHHHHTTC-------------TTTGGGG--------------------------------TTSEEEEEESHHHHHHHH
T ss_pred EEecCCCCCH-------------HHHHhhc--------------------------------CCCEEEEECCCCCCHHHH
Confidence 8999877776 2233222 134799999999999999
Q ss_pred HHHHHhCCCCcccccCC-------CcccceEEEEecCCCccccCCceeecCC
Q psy11743 323 IRYLLERDFPGIHIGPE-------PTTDRFIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 323 ~n~l~~~~~~~~~v~~~-------~~~tr~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
+|.|.+... ..++.. .++|+......-. ...++||||+....
T Consensus 190 ln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 190 LNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLE 238 (307)
T ss_dssp HHHHCC---------------------CCCCCEEEET-TEEEESSCSCSSCC
T ss_pred HHHhccccc--ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccccc
Confidence 999998742 222222 2344422211111 46789999998754
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-13 Score=139.49 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=88.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|+|||||+|+|++..+. .. ..+|+. .+.....- . +.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~-~~~t~~~~~~~~~~~------~----------~~------------- 201 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GE-YIPTVFDNYSANVMV------D----------GK------------- 201 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CS-CCCCSEEEEEEEEEE------T----------TE-------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cc-cCCcccceeEEEEEE------C----------CE-------------
Confidence 4578999999999999999999987752 12 222322 22111000 0 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH--HHHHHHhC--CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR--RSIEALRG--HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~--~~l~~l~~--~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|+.+ ..+.... .++..+.. .+.|+++|+|
T Consensus 202 --~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~n 267 (332)
T 2wkq_A 202 --PVNLGLWDTAGLED-----------YDRLRPLSYPQTDVFLICFSLVS-PASFHHVRAKWYPEVRHHCPNTPIILVGT 267 (332)
T ss_dssp --EEEEEEEEECCCGG-----------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCTTSCEEEEEE
T ss_pred --EEEEEEEeCCCchh-----------hhHHHHHhccCCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 02367999999754 22233345689999999999985 2222221 34444443 2789999999
Q ss_pred CCCCCCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....+.+.. ....+.. .....+++.+||++|.|+
T Consensus 268 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi 317 (332)
T 2wkq_A 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQRGL 317 (332)
T ss_dssp CHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred chhcccccchhhhccccccccccHHHHHHHHH--HcCCcEEEEecCCCCcCH
Confidence 9999754321111100 0000000 111237889999999887
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-13 Score=142.68 Aligned_cols=111 Identities=22% Similarity=0.214 Sum_probs=47.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccc--ccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG--KFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~--~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+|+|.+|||||||+|+|++.. ..+...|++|++....+.+-.. .++...++.+. .++. .+...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~--~~~~~~l~~~~~p~~~~---------~~~~~ 68 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAIT--DHPCKELGCSPNPQNYE---------YRNGL 68 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEE--ECSCSSSCCSCCCSSSC---------EETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeecc--CCchHHhhhhccccccc---------ccCCc
Confidence 369999999999999999999987 4455666667666554322100 00000000000 0000 00000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-...+.+|||||+..+... +..+.......++.+|++++|+|+.+
T Consensus 69 ~~~~i~lvDtpG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 69 ALIPVKMVDVAGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEEEECC-------------------CCCSSTTCSEEEEEEETTC
T ss_pred ceEEEEEEECCCcccchhh----hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 0024899999999753211 01111122234689999999999985
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=137.39 Aligned_cols=185 Identities=19% Similarity=0.171 Sum_probs=110.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
...|+++|.||||||||+|+|++..+ ..++..|+||+.. ....++.++.++||||+.++. . .+...|..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~--~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~---~l~~~~~~ 78 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---D---ALGEFMDQ 78 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---S---HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCce--eeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---h---HHHHHHHH
Confidence 45799999999999999999999984 5678899999632 244567889999999998754 2 33333445
Q ss_pred hhhhhccccCccc-------cc---------ccccc--cceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 383 RFQCSLVNSPVLK-------GK---------VLQTP--EVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 383 ~~~~~~~~~~~~~-------~~---------~~~~~--~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
.+..++..+|+.. +. ..... .++.++|+||+|+.-. . . .+.+.+
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~----------~------~--~~~~~~ 140 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY----------P------E--EAMKAY 140 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS----------H------H--HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc----------h------H--HHHHHH
Confidence 5556666666421 11 11112 5677888888887210 0 0 011111
Q ss_pred HhccchhhhccchHHHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCC
Q psy11743 445 RKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHD 524 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 524 (551)
.+ +..+.+..+++++.+.+.+.|.+.+....++ ....||+ + .+ .+|
T Consensus 141 ---------------------~~----~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~---~~~~y~~-~----~~-~td 186 (301)
T 1wf3_A 141 ---------------------HE----LLPEAEPRMLSALDERQVAELKADLLALMPE---GPFFYPE-D----YA-KSD 186 (301)
T ss_dssp ---------------------HH----TSTTSEEEECCTTCHHHHHHHHHHHHTTCCB---CCCSSCT-T----CC-SBS
T ss_pred ---------------------HH----hcCcCcEEEEeCCCCCCHHHHHHHHHHhccc---CCCCCCc-c----cc-cCC
Confidence 00 0111223445555555554433332221111 1223332 2 11 256
Q ss_pred CCCCCccchHHHHHHHHHhHhhhhhc
Q psy11743 525 FTKFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
.|..+...+.+++++.+.+.+++|.-
T Consensus 187 ~~~~~~~~e~~Re~~~~~l~~eiP~~ 212 (301)
T 1wf3_A 187 QTFGEWVAEILREEAMKRLWHEVPYA 212 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCce
Confidence 77767788999999999999999964
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=150.07 Aligned_cols=100 Identities=23% Similarity=0.197 Sum_probs=72.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
..+.||||||+.+ |...+...+..+|++|+|+|+.+ +...+..+++..+...+.| +++|+||+|+.+
T Consensus 359 ~kI~IIDTPGHed-----------F~~~mi~gas~AD~aILVVDAtd-Gv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 359 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLGRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp CEEEEEECCCHHH-----------HHHHHHHTSCCCSEEEEEEETTT-CSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC
T ss_pred EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEcCCc-cCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Confidence 4689999999864 66677778899999999999996 6677777777777767888 789999999986
Q ss_pred HHHHH----HHHHHHHHHcccccCCCCceEEEecccCCC
Q psy11743 216 HQQLM----RVYGALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 216 ~~~~~----~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
.++.. +.....+...+. .....+++++||++|.
T Consensus 427 d~e~le~i~eEi~elLk~~G~--~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDF--PGDDTPIVRGSALKAL 463 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS--CTTTCCEEECCSTTTT
T ss_pred chhhHHHHHHHHHHHHHhccc--cccceeEEEEEeccCC
Confidence 33321 222233333332 1124588999999884
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-13 Score=144.92 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=83.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC-
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS- 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~- 133 (551)
...+|+++|.+|||||||+|+|++..+. ....+|.............+.+ .++.
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~---~~~~~t~g~~~~~~~~~~~~~v----------------------~~~~~ 94 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFD---PKESQTHGLNVVTKQAPNIKGL----------------------ENDDE 94 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGG----------------------TTCST
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceEEEEeccccccce----------------------eecCC
Confidence 4589999999999999999999998752 2222222111110000000000 0000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~ 211 (551)
.-...+.++||||... +......++..+|++++|+|+++. .....++..+.. .+.|+++|+||+
T Consensus 95 ~~~~~~~i~Dt~G~e~-----------~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~ 160 (535)
T 3dpu_A 95 LKECLFHFWDFGGQEI-----------MHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKI 160 (535)
T ss_dssp TTTCEEEEECCCSCCT-----------TTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCT
T ss_pred CceEEEEEEECCcHHH-----------HHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECC
Confidence 0014589999999654 222334567889999999999852 444566666664 358999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..++. +.....+ . ....+++.+||++|.|+
T Consensus 161 Dl~~~~~v~~~~~~~~~---~----~~~~~~~~vSA~~g~gi 195 (535)
T 3dpu_A 161 DENPSYNIEQKKINERF---P----AIENRFHRISCKNGDGV 195 (535)
T ss_dssp TTCTTCCCCHHHHHHHC---G----GGTTCEEECCC-----C
T ss_pred CcccccccCHHHHHHHH---H----hcCCceEEEecCcccCH
Confidence 997543211 1111111 1 11236889999999998
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-13 Score=135.73 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=84.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.-.+|+|||.||||||||+|+|++.+ +.+...|.+|++....+..-. .
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~-----------------~-------------- 118 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYK-----------------G-------------- 118 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEET-----------------T--------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeC-----------------C--------------
Confidence 34689999999999999999999987 456777888888876544311 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
.++.++||||+..+... +..........+++||++++|+|+.+ +.. ....+...|.. ..+|.++++|
T Consensus 119 --~~i~l~D~pGl~~~a~~----~~~~g~~~l~~i~~ad~il~vvD~~~-p~~-~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 119 --AKIQMLDLPGIIDGAKD----GRGRGKQVIAVARTCNLLFIILDVNK-PLH-HKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp --EEEEEEECGGGCCC---------CHHHHHHHHHHHCSEEEEEEETTS-HHH-HHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred --cEEEEEeCCCccCCchh----hhHHHHHHHHHHHhcCccccccccCc-cHH-HHHHHHHHHHHhhHhhccCChhhhhh
Confidence 45899999999875332 22244566677899999999999985 322 22223233332 3578899999
Q ss_pred CCCC
Q psy11743 210 KADM 213 (551)
Q Consensus 210 K~Dl 213 (551)
|+|.
T Consensus 191 K~d~ 194 (376)
T 4a9a_A 191 KKEK 194 (376)
T ss_dssp ECSS
T ss_pred Hhhh
Confidence 9996
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-12 Score=136.54 Aligned_cols=136 Identities=20% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc--eEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~--~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+|+|.+|+|||||+|+|++..-..-..+.....+ +.+...+.+. ....|..+. .....+..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~-E~~rGiTi~----------~~~~~~~~- 79 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEM-EKQRGISIT----------TSVMQFPY- 79 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CC----------TTEEEEEE-
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchh-cccCCccee----------eeEEEEEE-
Confidence 457899999999999999999997532110000000000 0000000000 000111110 00000000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
.. ..+.||||||+.+ |...+..++..+|++|+|+|+.+ +...+...++..+...+.|+++|+||+|
T Consensus 80 ~~--~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 80 HD--CLVNLLDTPGHED-----------FSEDTYRTLTAVDCCLMVIDAAK-GVEDRTRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TT--EEEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CC--eEEEEEECCCChh-----------HHHHHHHHHHHCCEEEEEEeCCc-cchHHHHHHHHHHHHcCCCEEEEEcCcC
Confidence 00 4589999999965 45566778899999999999996 7788888888888888999999999999
Q ss_pred CCCH
Q psy11743 213 MVDH 216 (551)
Q Consensus 213 l~~~ 216 (551)
+...
T Consensus 146 l~~~ 149 (529)
T 2h5e_A 146 RDIR 149 (529)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 9754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=122.17 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=84.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.++|+|+|++|||||||+|+|+|..+... ..|..+.+.... +..+ |..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~-----------------g~~------------- 53 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVD-----------------GKT------------- 53 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEET-----------------TEE-------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEEC-----------------CEE-------------
Confidence 47899999999999999999999875321 112111111111 1110 100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHh---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~---~~~~~vilVlNK 210 (551)
..+.++||||... +......+...+|++++|+|... ..+.. ...++..+. ..+.|+++|+||
T Consensus 54 --~~~~i~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK 119 (199)
T 2f9l_A 54 --IKAQIWDTAGQER-----------YRRITSAYYRGAVGALLVYDIAK-HLTYENVERWLKELRDHADSNIVIMLVGNK 119 (199)
T ss_dssp --EEEEEEECSSGGG-----------TTCCCHHHHTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred --EEEEEEECCCchh-----------hhhhhHHHHhcCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 2367899999653 12223345578999999999875 22211 123443333 246889999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .....+.. ..+..+.+.+||+++.++
T Consensus 120 ~Dl~~~~~~~~~~a~~l~-------~~~~~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 120 SDLRHLRAVPTDEARAFA-------EKNNLSFIETSALDSTNV 155 (199)
T ss_dssp TTCGGGCCSCHHHHHHHH-------HHTTCEEEECCTTTCTTH
T ss_pred cccccccCcCHHHHHHHH-------HHcCCeEEEEeCCCCCCH
Confidence 999642111 01111111 122345677999988877
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-13 Score=137.68 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=47.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE---EEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI---AVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~---~~~~~~~~~~l~dt~gi~ 364 (551)
+...|+++|+||+|||||+|+|++..+ ..++..|++|+.. .+..++.++.++||||+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~--~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI--SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE--EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 345799999999999999999999973 5678889988632 244567889999999986
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=137.38 Aligned_cols=133 Identities=18% Similarity=0.127 Sum_probs=84.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|++|+|||||+++|++........+. .. .+........ ... ..|..+... ...+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~--V~-------~g~~~~d~~~---~e~-~~giti~~~--~~~~~~ 71 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGR--VE-------EGTTTTDYTP---EAK-LHRTTVRTG--VAPLLF 71 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCC--GG-------GTCCSSCCSH---HHH-HTTSCCSCE--EEEEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccce--ec-------CCcccccCCH---HHH-hcCCeEEec--ceEEee
Confidence 34578999999999999999999976532111110 00 0000000000 000 000000000 000000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
. ...+.+|||||+.+ |...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+||+|+
T Consensus 72 ~-~~~~nliDTpG~~~-----------f~~~~~~~l~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 72 R-GHRVFLLDAPGYGD-----------FVGEIRGALEAADAALVAVSAEA-GVQVGTERAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp T-TEEEEEEECCCSGG-----------GHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred C-CEEEEEEeCCCccc-----------hHHHHHHHHhhcCcEEEEEcCCc-ccchhHHHHHHHHHHccCCEEEEecCCch
Confidence 0 13589999999864 56677888899999999999986 78888888888888889999999999998
Q ss_pred C
Q psy11743 214 V 214 (551)
Q Consensus 214 ~ 214 (551)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 7
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=129.96 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=53.9
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||||+.... ....+.+|++++|+|+.. +...+ .+...+ ...|.++|+||+|+.+.
T Consensus 167 ~~~iliDT~Gi~~~~--------------~~l~~~~d~vl~V~d~~~-~~~~~--~i~~~i--l~~~~ivVlNK~Dl~~~ 227 (349)
T 2www_A 167 YDIILIETVGVGQSE--------------FAVADMVDMFVLLLPPAG-GDELQ--GIKRGI--IEMADLVAVTKSDGDLI 227 (349)
T ss_dssp CSEEEEECCCC--CH--------------HHHHTTCSEEEEEECCC-----------------CCSCSEEEECCCSGGGH
T ss_pred CCEEEEECCCcchhh--------------hhHHhhCCEEEEEEcCCc-chhHH--HhHHHH--HhcCCEEEEeeecCCCc
Confidence 468999999986421 123578999999999975 22111 111112 24688999999999864
Q ss_pred HHHHHHHHHHHHHcccccC---CCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVLQ---TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~---~~~~~~v~iSa~~g~~~ 252 (551)
.............+..... ...++++++||++|.|+
T Consensus 228 ~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi 266 (349)
T 2www_A 228 VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI 266 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTH
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCH
Confidence 3322222222111221111 12357899999999987
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=125.88 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=47.4
Q ss_pred ccCEEEEEEeCCCC--CCChHHHHHHHHHh----CCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEe
Q psy11743 171 RVDRIILLFDAHKL--DISDEFRRSIEALR----GHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 171 ~aD~il~VvDa~~~--~~~~~~~~~l~~l~----~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~i 244 (551)
++|++++|+|+++. ........++..+. ..+.|+++|+||+|+.+...+. ....... .....+.+.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~-~~~~~~~------~~~~~~~~e~ 234 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR-DAHTFAL------SKKNLQVVET 234 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH-HHHHHHH------TSSSCCEEEC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHH-HHHHHHH------hcCCCeEEEE
Confidence 69999999999863 22222234444433 2478999999999998765442 1111111 1113467889
Q ss_pred cccCCCCC
Q psy11743 245 GSFWDQPL 252 (551)
Q Consensus 245 Sa~~g~~~ 252 (551)
||++|.|+
T Consensus 235 SAk~g~gv 242 (255)
T 3c5h_A 235 SARSNVNV 242 (255)
T ss_dssp BTTTTBSH
T ss_pred ECCCCCCH
Confidence 99999887
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-12 Score=139.28 Aligned_cols=131 Identities=16% Similarity=0.133 Sum_probs=82.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCC---CCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIH---IGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~---~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+|+|.+|+|||||+|+|++....... +..+.+ ...+...+. -.+ .........+..
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~-----~~D~~~~e~-~~g----------iTi~~~~~~~~~ 72 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGAS-----QMDWMEQEQ-DRG----------ITITSAATTAAW 72 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-----------------------------------------CCSEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCce-----ecccchhhh-hcC----------ceEeeeeEEEEE
Confidence 4578999999999999999999964321110 111111 000000000 000 000000001111
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
. . ..+.||||||+.+ |...+..++..+|++|+|+|+.+ +.+.+...++..+...+.|+++|+||+
T Consensus 73 ~-~--~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~~p~ilviNK~ 137 (693)
T 2xex_A 73 E-G--HRVNIIDTPGHVD-----------FTVEVERSLRVLDGAVTVLDAQS-GVEPQTETVWRQATTYGVPRIVFVNKM 137 (693)
T ss_dssp T-T--EEEEEECCCCCSS-----------CCHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred C-C--eeEEEEECcCCcc-----------hHHHHHHHHHHCCEEEEEECCCC-CCcHHHHHHHHHHHHcCCCEEEEEECC
Confidence 1 1 4589999999975 45566778899999999999996 778888788888888899999999999
Q ss_pred CCCCH
Q psy11743 212 DMVDH 216 (551)
Q Consensus 212 Dl~~~ 216 (551)
|+...
T Consensus 138 Dl~~~ 142 (693)
T 2xex_A 138 DKLGA 142 (693)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 99863
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.2e-13 Score=130.07 Aligned_cols=187 Identities=12% Similarity=0.019 Sum_probs=112.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCC---chhhhhhhHH
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQF---RPLDKFGNSF 380 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~---~~~~~~~~~~ 380 (551)
++|+++|+||+||||++|+|.|.. ..++..|++|. ...+.+++..+.++||||..+..... +.-+.....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~---~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN---QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS---EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 589999999999999999999987 67899999995 33355678889999999997654210 2222233333
Q ss_pred HhhhhhhccccCcc--------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 381 LNRFQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
+.. ..+|+. ....+....++.|+|+||+|+. ++ .......+.+.+.+.
T Consensus 79 ~~~-----~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~----------~~--~~~~~~~~~l~~~lg- 140 (256)
T 3iby_A 79 VID-----LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIA----------EH--RGISIDTEKLESLLG- 140 (256)
T ss_dssp HHH-----SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHH----------HH--TTCEECHHHHHHHHC-
T ss_pred Hhh-----CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcC----------Cc--CCcHHHHHHHHHHcC-
Confidence 311 233321 1223334578899999999982 11 111122344555553
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhcc-CCCCCCChHHHHHHhcc
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQI-SPGDFPKVEKMQELLQH 522 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 522 (551)
.|++.+ ++|.+ +++++.+.++ ++ ....|+. .....+.++...+...... ....++.+|..-++|+.
T Consensus 141 -~~vi~~SA~~g~gi~el~~~i~~~-~~------~~~~y~~--~~e~~i~~i~~~~~~~~~~~~~~~~~~r~~a~~~le~ 210 (256)
T 3iby_A 141 -CSVIPIQAHKNIGIPALQQSLLHC-SQ------KIKPLKL--SLSVAAQQILNDLENQLISKGYKNSFAYYFSRRLAEG 210 (256)
T ss_dssp -SCEEECBGGGTBSHHHHHHHHHTC-CS------CCCCCCC--CCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred -CCEEEEECCCCCCHHHHHHHHHhh-hc------CcccCCH--HHHHHHHHHHHHHhhhcccccccccChhHHHHHHHCC
Confidence 576666 88899 9999999765 11 1113332 2333334444444332200 00136778888788876
Q ss_pred CC
Q psy11743 523 HD 524 (551)
Q Consensus 523 ~d 524 (551)
.+
T Consensus 211 d~ 212 (256)
T 3iby_A 211 DT 212 (256)
T ss_dssp CC
T ss_pred CH
Confidence 43
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-12 Score=119.19 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+|+|++|||||||+|+|++..+.. ...|..+.+.... +... |..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~-----------------g~~------------ 77 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVD-----------------GKT------------ 77 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEET-----------------TEE------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEEC-----------------CEE------------
Confidence 45799999999999999999999987532 1122111111111 1110 100
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK 210 (551)
..+.++||||...- ......+...++.+++|+|............++..+. ....|+++|+||
T Consensus 78 ---~~~~i~Dt~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK 143 (191)
T 1oix_A 78 ---IKAQIWDTAGLERY-----------RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143 (191)
T ss_dssp ---EEEEEEEECSCCSS-----------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ---EEEEEEECCCCcch-----------hhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 12567999998641 1123345578999999999874111111123443333 346789999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.... .....+.. ..+....+.+||+++.++
T Consensus 144 ~Dl~~~~~~~~~~a~~l~-------~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 144 SDLRHLRAVPTDEARAFA-------EKNGLSFIETSALDSTNV 179 (191)
T ss_dssp GGGGGGCCSCHHHHHHHH-------HHTTCEEEECCTTTCTTH
T ss_pred cccccccccCHHHHHHHH-------HHcCCEEEEEeCCCCCCH
Confidence 998642111 01111111 123345677999888876
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-11 Score=132.44 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=85.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|..|+|||||+++|+...-.....+ ...+......+...+. ..|.........+....
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g--~v~~g~~~~D~~~~E~-----------~rgiTi~~~~~~~~~~~ 74 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG--EVHDGAATMDWMEQEQ-----------ERGITITSAATTAFWSG 74 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--ccCCCceeecChhhHH-----------hcCceeeeceEEEEECC
Confidence 4568999999999999999999986431111100 0000000100000000 00000000011111110
Q ss_pred ----CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 134 ----PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 134 ----~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
.-...+.||||||+.+ |...+..++..+|++|+|+|+.. +...+...++..+...+.|+++|+|
T Consensus 75 ~~~~~~~~~i~liDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~~ip~ilviN 142 (704)
T 2rdo_7 75 MAKQYEPHRINIIDTPGHVD-----------FTIEVERSMRVLDGAVMVYCAVG-GVQPQSETVWRQANKYKVPRIAFVN 142 (704)
T ss_pred ccccCCceeEEEEeCCCccc-----------hHHHHHHHHHHCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 0014589999999975 66677788899999999999996 7777777777777778899999999
Q ss_pred CCCCCCH
Q psy11743 210 KADMVDH 216 (551)
Q Consensus 210 K~Dl~~~ 216 (551)
|+|+...
T Consensus 143 KiD~~~~ 149 (704)
T 2rdo_7 143 KMDRMGA 149 (704)
T ss_pred CCCcccc
Confidence 9999753
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-12 Score=129.02 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=58.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+... ....+..+|++++|+|+.. +-..+ .+...+ ...|.++|+||+|+.+.
T Consensus 172 ~~~iiiDTpGi~~~--------------~~~~~~~aD~vl~V~d~~~-~~~~~--~l~~~~--~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQS--------------EVAVANMVDTFVLLTLART-GDQLQ--GIKKGV--LELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSSH--------------HHHHHTTCSEEEEEEESST-TCTTT--TCCTTS--GGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCcH--------------HHHHHHhCCEEEEEECCCC-CccHH--HHHHhH--hhcCCEEEEECCCCcCh
Confidence 46999999997641 1123589999999999874 21111 111111 23689999999999865
Q ss_pred HHHHHHHHHHHHHccccc---CCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVL---QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~---~~~~~~~v~iSa~~g~~~ 252 (551)
.............+..+. .....+++.+||++|.|+
T Consensus 233 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi 271 (355)
T 3p32_A 233 KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGL 271 (355)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSH
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCH
Confidence 443222222211121110 112368899999999987
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=125.79 Aligned_cols=146 Identities=19% Similarity=0.202 Sum_probs=88.4
Q ss_pred HHhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHH--HHHHHHHHHHcccccCCCCceEEEe
Q psy11743 168 FAERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQL--MRVYGALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 168 ~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~--~~~~~~~~~~l~~l~~~~~~~~v~i 244 (551)
.+.++|.+++| |+..+.++... ..++......++++++|+||+|+.+++.. .+.+...++.+|. +++++
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~-------~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGY-------RVLMV 198 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTC-------CEEEC
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCC-------cEEEE
Confidence 46899999977 55554555442 23333334568899999999999987541 2223344444433 58899
Q ss_pred cccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHH
Q psy11743 245 GSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIR 324 (551)
Q Consensus 245 Sa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n 324 (551)
||.++.++ ++|...+ ..-.++++|++|+||||++|
T Consensus 199 Sa~~~~gl-------------~~L~~~~--------------------------------~G~~~~lvG~sG~GKSTLln 233 (358)
T 2rcn_A 199 SSHTQDGL-------------KPLEEAL--------------------------------TGRISIFAGQSGVGKSSLLN 233 (358)
T ss_dssp BTTTTBTH-------------HHHHHHH--------------------------------TTSEEEEECCTTSSHHHHHH
T ss_pred ecCCCcCH-------------HHHHHhc--------------------------------CCCEEEEECCCCccHHHHHH
Confidence 99887765 2222211 13478999999999999999
Q ss_pred HHHhCCC-Cc-ccccCCCc----ccceEEEEecCCCccccCCceeecC
Q psy11743 325 YLLERDF-PG-IHIGPEPT----TDRFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 325 ~l~~~~~-~~-~~v~~~~~----~tr~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
.|.|... .. -.++..+| +|+...+.+-.....++||||+...
T Consensus 234 ~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 234 ALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 9998752 11 11111112 3443333333344568999998864
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=122.27 Aligned_cols=114 Identities=17% Similarity=0.294 Sum_probs=72.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|..|||||||++++.+...+......+||.... +.. +.. .-
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~----------------~~~----------------v~~--~v 46 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS----------------LEH----------------FST--LI 46 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCC----------------CEE----------------ECS--SS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeee----------------eEE----------------Ecc--EE
Confidence 48999999999999999988654321111122231110 000 000 13
Q ss_pred CeEEEeCCCCCCCcccccccccchHH---HHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH---Hh--CCCCcEEEEEc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTG---VLEWFAERVDRIILLFDAHKLDISDEFRRSIEA---LR--GHDDKIRIVLN 209 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~---~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~---l~--~~~~~vilVlN 209 (551)
.+.+|||||... |.. ....+.++++++++|+|+++ .+......+.++ +. ..+.|+++|+|
T Consensus 47 ~LqIWDTAGQEr-----------f~~~~l~~~~yyr~a~~~IlV~Ditd-~~~~~~~~l~~~l~~~~~~~~~ipillvgN 114 (331)
T 3r7w_B 47 DLAVMELPGQLN-----------YFEPSYDSERLFKSVGALVYVIDSQD-EYINAITNLAMIIEYAYKVNPSINIEVLIH 114 (331)
T ss_dssp CEEEEECCSCSS-----------SCCCSHHHHHHHTTCSEEEEECCCSS-CTTHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred EEEEEECCCchh-----------ccchhhhhhhhccCCCEEEEEEECCc-hHHHHHHHHHHHHHHHhhcCCCCcEEEEEE
Confidence 599999999875 211 34567899999999999996 333333333222 22 24689999999
Q ss_pred CCCCCCHH
Q psy11743 210 KADMVDHQ 217 (551)
Q Consensus 210 K~Dl~~~~ 217 (551)
|+|+.+++
T Consensus 115 K~DL~~~~ 122 (331)
T 3r7w_B 115 KVDGLSED 122 (331)
T ss_dssp CCCSSCSH
T ss_pred CcccCchh
Confidence 99998753
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=133.80 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|.+|+|||||+|+|+.........+. ..+......+...+. ..|.........+...
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~--v~~~~~~~d~~~~E~-----------~~giTi~~~~~~~~~~- 75 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE--VHEGAATMDFMEQER-----------ERGITITAAVTTCFWK- 75 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET-
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccce--ecCCceeccCchhhh-----------hcccccccceEEEEEC-
Confidence 34578999999999999999999964311100000 000000000000000 0000000000011110
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
...+.+|||||+.+ |...+..++..+|++|+|+|+.+ +...+....+..+...+.|+++|+||+|+
T Consensus 76 --~~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~~~p~ivviNKiD~ 141 (691)
T 1dar_A 76 --DHRINIIDTPGHVD-----------FTIEVERSMRVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYKVPRIAFANKMDK 141 (691)
T ss_dssp --TEEEEEECCCSSTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECTTS
T ss_pred --CeEEEEEECcCccc-----------hHHHHHHHHHHCCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEECCCc
Confidence 14589999999965 56677888899999999999996 77788777777787889999999999999
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 142 ~~~ 144 (691)
T 1dar_A 142 TGA 144 (691)
T ss_dssp TTC
T ss_pred ccC
Confidence 864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=127.37 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=75.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC------CCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP------EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~------~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
.++|+|+|.+|+|||||+|+|++.........+ .+|... ...... +. .
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~-~~~~~~-------------~~-~----------- 90 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQI-EASTVE-------------IE-E----------- 90 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEE-EEEEEC----------------------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeE-EEEEEE-------------ee-c-----------
Confidence 367999999999999999999987643211110 111111 000000 00 0
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHH----HHHHHHh-------------ccCEEEEEEeCCCCCCChHHHH
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTG----VLEWFAE-------------RVDRIILLFDAHKLDISDEFRR 192 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~----~~~~~~~-------------~aD~il~VvDa~~~~~~~~~~~ 192 (551)
......+++|||||+.+.... .+....+.. +...++. ++|++++++++...++...+..
T Consensus 91 ---~~~~~~l~i~DTpG~gd~~~~-~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~ 166 (361)
T 2qag_A 91 ---RGVKLRLTVVDTPGYGDAINC-RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA 166 (361)
T ss_dssp ----CEEEEEEEEC---------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHH
T ss_pred ---CCcccceEEEEeccccccCcc-HHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHH
Confidence 000024899999999653211 000001111 1113332 2357888888743367777767
Q ss_pred HHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 193 SIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 193 ~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
++..+. .+.|+|+|+||+|+....++..... .....- .....+++.+||+++.+
T Consensus 167 ~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~k~-~i~~~~---~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 167 FMKAIH-NKVNIVPVIAKADTLTLKERERLKK-RILDEI---EEHNIKIYHLPDAESDE 220 (361)
T ss_dssp HHHHTC-S-SCEEEEEECCSSSCHHHHHHHHH-HHHHHT---TCC-CCSCCCC------
T ss_pred HHHHhc-cCCCEEEEEECCCCCCHHHHHHHHH-HHHHHH---HHCCCCEEeCCCcCCCc
Confidence 777664 5789999999999998765543211 221111 12234667789877654
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=139.39 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=56.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.||||||+.+ |...+..++..+|++|+|+|+.+ +.+.+...++..+...+.|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDTIE-GVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCS-----------SCHHHHHHHHTCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchh-----------hHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 4589999999976 55667788899999999999996 777887777666667789999999999986
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-11 Score=123.45 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=88.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
....|+|+|.+|||||||+|+|++... .+...+.+|......+..- +.
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~------------------------------~~- 203 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEV------------------------------SE- 203 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEEC------------------------------SS-
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEe------------------------------cC-
Confidence 346799999999999999999998752 1222222232222211110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEEc
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVLN 209 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVlN 209 (551)
...++++||||+........ .+.......+++++.+++|+|+.. ........+.+.+.. ..+|.++|+|
T Consensus 204 -~~~~~l~DtpGli~~a~~~~----~L~~~fl~~~era~~lL~vvDls~-~~~~~ls~g~~el~~la~aL~~~P~ILVlN 277 (416)
T 1udx_A 204 -EERFTLADIPGIIEGASEGK----GLGLEFLRHIARTRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVALN 277 (416)
T ss_dssp -SCEEEEEECCCCCCCGGGSC----CSCHHHHHHHTSSSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSCEEEEEE
T ss_pred -cceEEEEeccccccchhhhh----hhhHHHHHHHHHHHhhhEEeCCcc-CCHHHHHHHHHHHHHHhHHhhcCCEEEEEE
Confidence 03489999999976322111 121222344678999999999961 221222222222221 2589999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+... ...+.+...+.. ...+++.+||+++.++
T Consensus 278 KlDl~~~-~~~~~l~~~l~~-------~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 278 KVDLLEE-EAVKALADALAR-------EGLAVLPVSALTGAGL 312 (416)
T ss_dssp CCTTSCH-HHHHHHHHHHHT-------TTSCEEECCTTTCTTH
T ss_pred CCChhhH-HHHHHHHHHHHh-------cCCeEEEEECCCccCH
Confidence 9999876 332222222211 1236889999998887
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=131.97 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=61.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..++||||||+.+ |...+.+++.-+|.+|+|+|+.. +...+...+++.+.+.+.|.++++||+|...
T Consensus 100 ~~iNlIDTPGHvD-----------F~~Ev~raL~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 100 RVVNLLDTPGHQD-----------FSEDTYRVLTAVDSALVVIDAAK-GVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEEEECCCCGGG-----------CSHHHHHHHHSCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred EEEEEEeCCCcHH-----------HHHHHHHHHHhcCceEEEeecCC-CcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 4599999999976 78888999999999999999997 9999999999999999999999999999875
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.3e-12 Score=128.11 Aligned_cols=97 Identities=20% Similarity=0.088 Sum_probs=55.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+.+.. . .....+|++++|+|+.. +-. ...+.... .+.|.++|+||+|+...
T Consensus 149 ~~i~liDTpG~~~~~-----------~---~~~~~aD~vl~Vvd~~~-~~~--~~~l~~~~--~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 149 YDVVIVETVGVGQSE-----------T---EVARMVDCFISLQIAGG-GDD--LQGIKKGL--MEVADLIVINKDDGDNH 209 (341)
T ss_dssp CSEEEEEEECCTTHH-----------H---HHHTTCSEEEEEECC---------CCCCHHH--HHHCSEEEECCCCTTCH
T ss_pred CCEEEEeCCCccchH-----------H---HHHHhCCEEEEEEeCCc-cHH--HHHHHHhh--hcccCEEEEECCCCCCh
Confidence 469999999987521 1 13589999999999974 211 00000011 14678999999999875
Q ss_pred HHHHHHHHHHHHHccccc---CCCCceEEEecccCCCCC
Q psy11743 217 QQLMRVYGALMWSLGKVL---QTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~---~~~~~~~v~iSa~~g~~~ 252 (551)
.............++.+. ....++++++||++|.|+
T Consensus 210 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 210 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH
Confidence 443322212111111111 111357889999999887
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-11 Score=117.71 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=111.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
+.++|+++|+||+||||++|+|.+.. ..++..|++|.. ..+..++..+.++||||..+.. +.+.-+.....++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~---~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTK---QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG-YSSIDEKIARDYL 79 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC-SSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC-CCCHHHHHHHHHH
Confidence 35789999999999999999999987 458888998852 2344567788999999987654 2222222333333
Q ss_pred hhhhhhccccCcc--------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 382 NRFQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 382 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
.. ..+|+. .........++.|+|+||+|+ .+..... ...+.+.+.+.
T Consensus 80 ~~-----~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl----------~~~~~i~--~~~~~l~~~lg-- 140 (258)
T 3a1s_A 80 LK-----GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDE----------AKKTGMK--IDRYELQKHLG-- 140 (258)
T ss_dssp HH-----SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHH----------HHHTTCC--BCHHHHHHHHC--
T ss_pred hh-----cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCC----------CCccchH--HHHHHHHHHcC--
Confidence 21 122221 112233357888999999998 1111111 12344555442
Q ss_pred cchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccC
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHH 523 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (551)
.|++.+ ++|.+ +++++.+.+.........+....|+ ......+.++...+...+ ..++.++..-+.|+..
T Consensus 141 ~~vi~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y~--~~~~~~i~~~~~~~~~~~----~~~~~r~~a~~~le~d 213 (258)
T 3a1s_A 141 IPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRMILDYG--EKVESEIKKVENFLRDKK----LRINPRYFALKYLSGD 213 (258)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCCC--HHHHHHHHHHHHHHTTSC----CSSCHHHHHHHHHTTC
T ss_pred CCEEEEEeeCCcCHHHHHHHHHHHhhccccCCCcccCCc--hhHHHHHHHHHHHHhhcc----cccchHHHHHHHHCCC
Confidence 576666 88999 9999999876531110001111243 334444444444442111 1355677776777763
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=119.97 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=61.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCccccc-ccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFG-KFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~-~~g~~~~~~~~~~~~~~~~ 135 (551)
++|+|+|.+|+|||||+|+|++.. +.+...|.+|.+....+..-+ +..++.+. .++... ..|...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~------~~~l~~~~~~~~~~~-------~~~~~~ 67 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLE------DERLYALQRTFAKGE-------RVPPVV 67 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECC------CHHHHHHHHHHCBTT-------BCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecC------hHHHHHHHHHhcccc-------cccccC
Confidence 469999999999999999999976 233444444444433322111 10000000 000000 000000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
-..+.+|||||+..+... +..+.......++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~----~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHK----GEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCS----SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccc----cchHHHHHHHHHHhCCEEEEEEECCC
Confidence 035899999999864322 11233455567899999999999974
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=118.34 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=58.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+|+|.+|||||||+|+|++.. +.+...|.+|.+....... +++..++.+.+. .-|....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~------~~~~r~~~l~~~-----------~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVP------MPDPRLDALAEI-----------VKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEE------CCCHHHHHHHHH-----------HCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEe------cCCcccceeeee-----------eccccee
Confidence 679999999999999999999987 3344445445443221111 111000000000 0000000
Q ss_pred -cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 137 -KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 137 -~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
..+.+|||||+..+..... .+.......++++|++++|+|+.+
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~----gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGE----GLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHG----GGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccc----hHHHHHHHHHHhcCeEEEEEecCC
Confidence 3489999999986432111 122233456789999999999984
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.12 E-value=4e-11 Score=132.91 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=61.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..++||||||+.+ |...+..++.-+|.+|+|+|+.. +...+...+++.+.+.+.|.++++||+|...
T Consensus 67 ~~iNlIDTPGH~D-----------F~~Ev~raL~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 67 TKVNIIDTPGHMD-----------FLAEVYRSLSVLDGAILLISAKD-GVQAQTRILFHALRKMGIPTIFFINKIDQNG 133 (638)
T ss_dssp CBCCCEECCCSSS-----------THHHHHHHHTTCSEEECCEESSC-TTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 4689999999986 88889999999999999999997 9999999999999999999999999999864
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=112.60 Aligned_cols=188 Identities=11% Similarity=0.100 Sum_probs=107.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec-CCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD-EREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~-~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
.++|+++|+|||||||++|.|.+.. ..++..||+|. .....+. +..+.++||||..+-. +.+.-+.....++..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~---~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~-~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN---QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMS-PYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC---CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSS-CSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccC-CCChHHHHHHHHHhc
Confidence 5689999999999999999999986 46788899885 3333333 6678899999987643 122222333333321
Q ss_pred hhhhccccCcc--------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
..+|+. .........++.|+|+||+|+. ++. ........+.+.+ ..|
T Consensus 79 -----~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~----------~~~--~~~~~~~~l~~~l--g~~ 139 (272)
T 3b1v_A 79 -----QRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVL----------DGQ--GKKINVDKLSYHL--GVP 139 (272)
T ss_dssp -----TCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHH----------HHT--TCCCCHHHHHHHH--TSC
T ss_pred -----CCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhC----------CcC--CcHHHHHHHHHHc--CCC
Confidence 122221 1122233578889999999982 111 1111234444444 246
Q ss_pred hhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccC
Q psy11743 450 SVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHH 523 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (551)
++.+ ++|.+ +++++.+.+.+. .....++.........+.|..+...+...++ .++.++..-++|+..
T Consensus 140 vi~~SA~~g~gi~el~~~i~~~~~---~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~----~~~~r~~a~~lle~d 209 (272)
T 3b1v_A 140 VVATSALKQTGVDQVVKKAAHTTT---STVGDLAFPIYDDRLEAAISQILEVLGNSVP----QRSARFYAIKLFEQD 209 (272)
T ss_dssp EEECBTTTTBSHHHHHHHHHHSCT---TTCCSCCCCCCCHHHHHHHHHHHHHHGGGSC----STTHHHHHHHHHTTC
T ss_pred EEEEEccCCCCHHHHHHHHHHHHh---hccCCCccCCCCHHHHHHHHHHHHHHhhccc----ccchHHHHHHHHCCC
Confidence 6655 88888 999999876432 1111111111233444444445444421111 123677766777763
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=109.83 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=70.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE-EE---ecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VM---YDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~-~~---~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..++|+++|.+|+||||++|+|++.... ..++..+++|+... .. .++..+.++||||+..+.......+.|.. +
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 105 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL-AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ-L 105 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS-SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH-H
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc-eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH-H
Confidence 5689999999999999999999998621 46778888887443 22 24678899999998776544333333322 2
Q ss_pred HhhhhhhccccC-------cccc---------cccccccceeEEEecccCC
Q psy11743 381 LNRFQCSLVNSP-------VLKG---------KVLQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 381 ~~~~~~~~~~~~-------~~~~---------~~~~~~~~~~v~~~~~wd~ 415 (551)
+.........+| ...+ ..+....++.++|+||+|+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 222222222222 1111 2222356788999999998
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=118.38 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=83.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCC---CCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIG---PEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~---~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.++|+|++|+|||||+|.|+|..+.+.... ++.+...+..+... ..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-------------------------------~~ 92 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-------------------------------SN 92 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-------------------------------Cc
Confidence 399999999999999999999864332221 11111111111110 00
Q ss_pred CccCeEEEeCCCCCCCcccccccc--c-chHHHHHHHHh-------------c--cC-EEEEEEeCCCCCCChHHHHHHH
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRG--Y-DFTGVLEWFAE-------------R--VD-RIILLFDAHKLDISDEFRRSIE 195 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~--~-~~~~~~~~~~~-------------~--aD-~il~VvDa~~~~~~~~~~~~l~ 195 (551)
+...++++||||+........... . .+......++. . +| ++++|+|+.. +++..+.++++
T Consensus 93 l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~-~l~~~Dieilk 171 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH-SLKSLDLVTMK 171 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC----CHHHHHHHH
T ss_pred cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC-CCCHHHHHHHH
Confidence 113589999999975321100000 0 01112222211 1 23 4667777775 88899888988
Q ss_pred HHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecc
Q psy11743 196 ALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246 (551)
Q Consensus 196 ~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa 246 (551)
.+. .+.++|+|+||+|.+++.++..........+. ..+.+++++|.
T Consensus 172 ~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~----~~gi~I~~is~ 217 (427)
T 2qag_B 172 KLD-SKVNIIPIIAKADAISKSELTKFKIKITSELV----SNGVQIYQFPT 217 (427)
T ss_dssp HTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB----TTBCCCCCCC-
T ss_pred HHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHH----HcCCcEEecCC
Confidence 887 68899999999999988776543332222232 23456677774
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.8e-10 Score=103.65 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=92.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
...++|+++|.+|+||||++|+|++.. ...+++.+++|+.......+..+.++||||+.........-+.+.. +...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK--IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR-LVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC--CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH-HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc--cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH-HHHH
Confidence 356799999999999999999999997 3677788888886666555678899999997654433222233322 1111
Q ss_pred hhhhccccCc-------ccc---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh-
Q psy11743 384 FQCSLVNSPV-------LKG---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK- 446 (551)
Q Consensus 384 ~~~~~~~~~~-------~~~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~- 446 (551)
.......+|+ ..+ .......++.++|+||+|+.-. ...+...+.+.+.+..
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM------------SERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG------------GGHHHHHHHHHHHHHSS
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh------------HHHHHHHHHHHHHHhhc
Confidence 1111111121 111 1222346788999999998311 1112233444444432
Q ss_pred -ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 -DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 -~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..+.+.+ ++|.+ +++++.+.+..
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 2355555 78888 88888887643
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-10 Score=113.16 Aligned_cols=190 Identities=19% Similarity=0.180 Sum_probs=112.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
.++|+++|++|+||||++|.|.|.. ..++..|++|.. ..+.+++..+.++||||..+.. ....-+.....++.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~---~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR---QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT-AHSIDELIARNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC---EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCC-SSCHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccc-cCCHHHHHHHHhhh
Confidence 4689999999999999999999987 478889998852 3355677889999999988643 22222222222221
Q ss_pred hhhhhccccCccc--------------cccccccc-ceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 383 RFQCSLVNSPVLK--------------GKVLQTPE-VARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 383 ~~~~~~~~~~~~~--------------~~~~~~~~-~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
...+|+.. -....... ++.++|+||+|+ .+...... ....+.+.+.
T Consensus 79 -----~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl----------~~~~~~~~--~~~~l~~~lg-- 139 (271)
T 3k53_A 79 -----DGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDL----------LKKKGAKI--DIKKMRKELG-- 139 (271)
T ss_dssp -----TTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHH----------HHHHTCCC--CHHHHHHHHS--
T ss_pred -----ccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhc----------CcccccHH--HHHHHHHHcC--
Confidence 12222210 11112233 888999999998 22211111 2344555553
Q ss_pred cchhhh--ccchH-HHHHHHHHHHHHHHhhhhccCccccchHHHhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhcc
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIYKQIQREYQISPVFGKKKELIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQH 522 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (551)
.|++.+ ++|.+ ++++..+...+.........+.-++ ....+.+.++...+. +.. ....|+..+..-+.|+.
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~--~~~e~~~~~l~~~~~-~~~-~~~~~~~~~~a~~~le~ 213 (271)
T 3k53_A 140 VPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD--EDIEREIKHISELLR-GTP-LAEKYPIRWLALKLLQR 213 (271)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC--HHHHHHHHHHHHHHH-SSS-STTTSCHHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC--HHHHHHHHHHHHHHh-hcc-cccccChhHHHHHHHCC
Confidence 566555 88899 9999999887643222112222233 233333333433332 221 23468888877676665
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-10 Score=117.23 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=25.6
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
...++|+++|.+|+||||++|+|+|..+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 3568999999999999999999999975
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-11 Score=127.56 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=78.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc-----CCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER-----DFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~-----~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
...|+++|.+|+|||||+|+|++. ....+...|++|++..... . +
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~-~------------------~----------- 211 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP-L------------------E----------- 211 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE-C------------------S-----------
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE-e------------------C-----------
Confidence 467999999999999999999997 4444455566555443221 0 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEE
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVl 208 (551)
..+.++||||+.+... ...... .+.+.... .+.|.+++++++.. .+.......++.+...+.|+++++
T Consensus 212 ------~~~~liDtPG~~~~~~--~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~-~~~~g~l~~l~~l~~~~~~~~~v~ 281 (369)
T 3ec1_A 212 ------SGATLYDTPGIINHHQ--MAHFVD-ARDLKIITPKREIHPRVYQLNEGQ-TLFFGGLARLDYIKGGRRSFVCYM 281 (369)
T ss_dssp ------TTCEEEECCSCCCCSS--GGGGSC-TTTHHHHSCSSCCCCEEEEECTTE-EEEETTTEEEEEEESSSEEEEEEE
T ss_pred ------CCeEEEeCCCcCcHHH--HHHHHh-HHHHHHHhcccccCceEEEEcCCc-eEEECCEEEEEEccCCCceEEEEe
Confidence 3489999999986431 111111 11222222 78999999999953 111111122444556678999999
Q ss_pred cCCCCCCHHH
Q psy11743 209 NKADMVDHQQ 218 (551)
Q Consensus 209 NK~Dl~~~~~ 218 (551)
||+|.++..+
T Consensus 282 ~k~d~~~~~~ 291 (369)
T 3ec1_A 282 ANELTVHRTK 291 (369)
T ss_dssp CTTSCEEEEE
T ss_pred cCCccccccc
Confidence 9999986543
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=105.87 Aligned_cols=150 Identities=13% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
..++|+++|.+|+||||++|.|.+..+. ..++..+++|+.......+..+.++||||+..........+.|... ....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~ 99 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRM-IETY 99 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHH-HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHH-HHHH
Confidence 5789999999999999999999998642 5667778888754433335579999999987665433323333321 1111
Q ss_pred hhhcccc-------Ccccc---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH--h
Q psy11743 385 QCSLVNS-------PVLKG---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR--K 446 (551)
Q Consensus 385 ~~~~~~~-------~~~~~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~ 446 (551)
......+ |+..+ .......++.++|+||+|+.-. .......+.+.+.+. .
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK------------GKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG------------GGHHHHHHHHHHHHTCCT
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh------------HHHHHHHHHHHHHHcccC
Confidence 1111111 22111 1222356788999999998311 111112334444443 1
Q ss_pred ccchhhh--ccchH-HHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
..+.+.+ ++|.+ +++++.+.+.
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCHHHHHHHHHHH
Confidence 3344444 77888 8888877653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.5e-10 Score=116.04 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=71.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCC-C----CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIG-P----EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~-~----~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
.+.|+|+|++|+|||||+|.|+|...+....+ . .+|+ ....+.+ .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~-~~~~i~~-----------------------------v 80 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTV-QVEQSKV-----------------------------L 80 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CC-EEEEEEC-----------------------------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccce-eeeeEEE-----------------------------E
Confidence 36789999999999999999999875211110 0 0111 0000000 0
Q ss_pred cC-CCCccCeEEEeCCCCCCCcccccccccchHH-------HHHHH-----------H--hccCEEEEEEeCCCCCCChH
Q psy11743 131 VN-SPVLKGISIVDTPGILSGEKQRVDRGYDFTG-------VLEWF-----------A--ERVDRIILLFDAHKLDISDE 189 (551)
Q Consensus 131 ~~-~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~-------~~~~~-----------~--~~aD~il~VvDa~~~~~~~~ 189 (551)
+. ..+...++++||||+...... ...+.. ....+ + .++|++|++++++..++...
T Consensus 81 ~q~~~~~~~Ltv~Dt~g~~~~~~~----~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~ 156 (418)
T 2qag_C 81 IKEGGVQLLLTIVDTPGFGDAVDN----SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 156 (418)
T ss_dssp ------CEEEEEEECC---------------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHH
T ss_pred EecCCcccceeeeechhhhhhccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHH
Confidence 00 011135899999999753210 000111 11111 1 33556777777752267787
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCCCCHHHHH
Q psy11743 190 FRRSIEALRGHDDKIRIVLNKADMVDHQQLM 220 (551)
Q Consensus 190 ~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~ 220 (551)
+..++..+.. +.++|+|+||+|++...++.
T Consensus 157 d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 157 DIEFMKRLHE-KVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHTT-TSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHhc-cCcEEEEEEcccCccHHHHH
Confidence 7778888865 78999999999999876554
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-11 Score=132.01 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCCCCCCccchHHHHHHHHHhHhhhhhc
Q psy11743 523 HDFTKFQTLRPRLIEVADKMLAEDIAHL 550 (551)
Q Consensus 523 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (551)
+|.+..+.+++.++|+|.+.+.++||.|
T Consensus 289 tDr~g~~~LaEiLrEkL~~hi~~ELP~l 316 (772)
T 3zvr_A 289 ADRMGTPYLQKVLNQQLTNHIRDTLPGL 316 (772)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHhhCccH
Confidence 6788889999999999999999999984
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.7e-11 Score=124.45 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=79.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC------CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEE
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF------PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCS 129 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~------~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~ 129 (551)
...|+++|.+|+|||||+|+|++... ..+...|++|++..... . +
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~-~------------------~---------- 210 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP-L------------------D---------- 210 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE-S------------------S----------
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE-e------------------c----------
Confidence 46899999999999999999999742 22334444444433210 0 0
Q ss_pred ecCCCCccCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEE
Q psy11743 130 LVNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIV 207 (551)
Q Consensus 130 ~~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilV 207 (551)
..+.++||||+.+... +..... .+.+... ....+.+++++|+.. .........++.+...+.|+++|
T Consensus 211 -------~~~~liDtPG~~~~~~--~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~-~~~~g~l~~~d~l~~~~~~~~~v 279 (368)
T 3h2y_A 211 -------EESSLYDTPGIINHHQ--MAHYVG-KQSLKLITPTKEIKPMVFQLNEEQ-TLFFSGLARFDYVSGGRRAFTCH 279 (368)
T ss_dssp -------SSCEEEECCCBCCTTS--GGGGSC-HHHHHHHSCSSCCCCEEEEECTTE-EEEETTTEEEEEEESSSEEEEEE
T ss_pred -------CCeEEEeCCCcCcHHH--HHHHhh-HHHHHHhccccccCceEEEEcCCC-EEEEcceEEEEEecCCCceEEEE
Confidence 2489999999987431 111111 2233332 367899999999852 11111112244455667899999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHcc
Q psy11743 208 LNKADMVDHQQLMRVYGALMWSLG 231 (551)
Q Consensus 208 lNK~Dl~~~~~~~~~~~~~~~~l~ 231 (551)
+||+|.++..+.......+...+|
T Consensus 280 ~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 280 FSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp ECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred ecCccccccccHHHHHHHHHHHhC
Confidence 999999876544443333333344
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.3e-10 Score=110.77 Aligned_cols=72 Identities=11% Similarity=-0.017 Sum_probs=40.2
Q ss_pred cCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHH---HHHHHHHHcccccCCCCceEEEecccC
Q psy11743 172 VDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMR---VYGALMWSLGKVLQTPEVARVYIGSFW 248 (551)
Q Consensus 172 aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~---~~~~~~~~l~~l~~~~~~~~v~iSa~~ 248 (551)
+++++++.++...++...+.+++..+. ...++++|+||+|+....++.. ......... ..+++.+||++
T Consensus 127 a~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~-------~~~~~e~Sa~~ 198 (301)
T 2qnr_A 127 VHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH-------NIKIYHLPDAE 198 (301)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHT-------TCCCCCCC---
T ss_pred hhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHc-------CCeEEecCCcc
Confidence 455777777653247777666666664 3578999999999997654321 111222111 23556789988
Q ss_pred CCCC
Q psy11743 249 DQPL 252 (551)
Q Consensus 249 g~~~ 252 (551)
+ ++
T Consensus 199 ~-~v 201 (301)
T 2qnr_A 199 S-DE 201 (301)
T ss_dssp ----
T ss_pred c-cc
Confidence 8 76
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-10 Score=117.43 Aligned_cols=97 Identities=21% Similarity=0.127 Sum_probs=53.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.||||||+.... . .....+|++++|+|+.. +- ....+...+. ..+.++|+||+|+.+.
T Consensus 148 ~~~iliDT~Gi~~~~----------~----~v~~~~d~vl~v~d~~~-~~--~~~~i~~~i~--~~~~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 148 FDVILVETVGVGQSE----------T----AVADLTDFFLVLMLPGA-GD--ELQGIKKGIF--ELADMIAVNKADDGDG 208 (337)
T ss_dssp CCEEEEEECSSSSCH----------H----HHHTTSSEEEEEECSCC---------CCTTHH--HHCSEEEEECCSTTCC
T ss_pred CCEEEEECCCCCcch----------h----hHHhhCCEEEEEEcCCC-cc--cHHHHHHHHh--ccccEEEEEchhccCc
Confidence 469999999997521 1 12478999999999863 21 1100100011 2356888899998653
Q ss_pred HHHHH-HHHHHHHHcccccC---CCCceEEEecccCCCCC
Q psy11743 217 QQLMR-VYGALMWSLGKVLQ---TPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~~~-~~~~~~~~l~~l~~---~~~~~~v~iSa~~g~~~ 252 (551)
..... ........+..+.. ...++++++||+++.|+
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi 248 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGL 248 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCH
Confidence 32211 11111111222111 11357889999998887
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=113.96 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=91.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCC---Cchhhhhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQ---FRPLDKFGN 378 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~---~~~~~~~~~ 378 (551)
+.++|+++|++|+||||++|+|.|.. ..++..|++|.. ....+.+..+.++||||..+.... .+.-+.+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~---~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR---QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC---EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHH
Confidence 35789999999999999999999997 588999998852 335556788999999999875411 111122222
Q ss_pred HHHhhhhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 379 SFLNRFQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 379 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
.++ ....+|+.. -..+....++.|+|+||+|+. +. .......+.+.+.+
T Consensus 79 ~~~-----~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~----------~~--~~~~~~~~~l~~~l 141 (274)
T 3i8s_A 79 HYI-----LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA----------EK--QNIRIEIDALSARL 141 (274)
T ss_dssp HHH-----HHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHH----------HH--TTEEECHHHHHHHH
T ss_pred HHH-----hhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccch----------hh--hhHHHHHHHHHHhc
Confidence 222 122333211 122233468889999999982 11 11111234455545
Q ss_pred Hhccchhhh--ccchH-HHHHHHHHHH
Q psy11743 445 RKDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 445 ~~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
. .|++.+ ++|.+ +++++.+.+.
T Consensus 142 g--~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 142 G--CPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp T--SCEEECCCGGGHHHHHHHHHHHTC
T ss_pred C--CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3 566666 88999 9999888653
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-10 Score=109.19 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=44.4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHH----HHHhCCCCcEEEEEcCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSI----EALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l----~~l~~~~~~vilVlNK~D 212 (551)
.+.||||||..+... .. .....+...+.. +++++|+|+.. ....... ... ......+.|+++|+||+|
T Consensus 110 d~iiiDtpG~~~~~~--~~---~l~~~~~~~~~~-~~iv~vvD~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 110 DYVLIDTPGQMETFL--FH---EFGVRLMENLPY-PLVVYISDPEI-LKKPNDYCFVRFFALLIDLRLGATTIPALNKVD 182 (262)
T ss_dssp SEEEEECCSSHHHHH--HS---HHHHHHHHTSSS-CEEEEEECGGG-CCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred CEEEEeCCCccchhh--hh---hhHHHHHHHHhh-ceEEeccchhh-hcCHHHHHHHHHHHHHHhcccCCCeEEEEeccc
Confidence 699999999864211 00 011222234456 89999999874 3333321 111 122234689999999999
Q ss_pred CCCHHH
Q psy11743 213 MVDHQQ 218 (551)
Q Consensus 213 l~~~~~ 218 (551)
+.+..+
T Consensus 183 ~~~~~~ 188 (262)
T 1yrb_A 183 LLSEEE 188 (262)
T ss_dssp GCCHHH
T ss_pred cccccc
Confidence 987643
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.8e-10 Score=123.69 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=61.4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
.++||||||+.+ |...+..++.-+|.+|+|+|+.. +...+...+++.+.+.+.|.++++||+|...
T Consensus 86 ~iNlIDTPGHvD-----------F~~Ev~~aLr~~DgavlvVDave-GV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 86 RVNVIDTPGHVD-----------FTIEVERSLRVLDGAVVVFCGTS-GVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEEEECCCSCTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred EEEEEeCCCCcc-----------cHHHHHHHHHHhCeEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 499999999987 88889999999999999999997 9999999999999999999999999999874
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=115.12 Aligned_cols=28 Identities=32% Similarity=0.653 Sum_probs=25.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
...|+|+++|.+|+||||++|+|+|..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3568999999999999999999999975
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-09 Score=103.13 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=79.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC-CCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN-SPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~-~~~ 135 (551)
+.++|+|++|+|||||+|.|+|...+.. + .+. ..+. .++... .......... ..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~--G------~i~--~~g~---~i~~~~-----------~~~~i~~v~q~~~~ 58 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK--A------SSW--NREE---KIPKTV-----------EIKAIGHVIEEGGV 58 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-------------------------CCCCC-----------SCCEEEESCC----
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC--C------ccc--cCCc---ccCcce-----------eeeeeEEEeecCCC
Confidence 6799999999999999999999764211 0 000 0000 000000 0000000000 111
Q ss_pred ccCeEEEeCCCCCCCcccccc--cccch-HHHHHHH--------------HhccCEEEEEEeCCCCCCChHHHHHHHHHh
Q psy11743 136 LKGISIVDTPGILSGEKQRVD--RGYDF-TGVLEWF--------------AERVDRIILLFDAHKLDISDEFRRSIEALR 198 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~--~~~~~-~~~~~~~--------------~~~aD~il~VvDa~~~~~~~~~~~~l~~l~ 198 (551)
...++++|+||+......... .-.++ ....... +.++++.++++|....++...+.+++..+.
T Consensus 59 ~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~ 138 (270)
T 3sop_A 59 KMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLS 138 (270)
T ss_dssp CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHH
T ss_pred cCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHH
Confidence 245899999999753221100 00000 0111111 234799999999764488999999999998
Q ss_pred CCCCcEEEEEcCCCCCCHHHHHH
Q psy11743 199 GHDDKIRIVLNKADMVDHQQLMR 221 (551)
Q Consensus 199 ~~~~~vilVlNK~Dl~~~~~~~~ 221 (551)
+. .++++|+||+|.+..+++..
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp TT-SEEEEEETTGGGSCHHHHHH
T ss_pred hc-CcEEEEEeccccCCHHHHHH
Confidence 77 99999999999998776544
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-10 Score=118.51 Aligned_cols=27 Identities=33% Similarity=0.662 Sum_probs=25.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
..|+|+++|.+|+||||++|+|+|..+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCc
Confidence 568999999999999999999999875
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-10 Score=109.29 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=53.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+.+|||+|..... . .++ ..++.+++|+|+.. +.... ...... .+.|.++|+||+|+.+.
T Consensus 109 ~d~iiidt~G~~~~~-~----~~~---------~~~~~~i~vvd~~~-~~~~~-~~~~~~---~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICP-V----DFD---------LGENYRVVMVSVTE-GDDVV-EKHPEI---FRVADLIVINKVALAEA 169 (221)
T ss_dssp CSEEEEEEEEBSSGG-G----GCC---------CSCSEEEEEEEGGG-CTTHH-HHCHHH---HHTCSEEEEECGGGHHH
T ss_pred CCEEEEeCCCCCCCC-c----hhc---------cccCcEEEEEeCCC-cchhh-hhhhhh---hhcCCEEEEecccCCcc
Confidence 358999999963211 0 011 14678999999985 32221 122222 35789999999998643
Q ss_pred H--HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 Q--QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~--~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. +..+ .......+ .+..+++.+||++|.|+
T Consensus 170 ~~~~~~~-~~~~~~~~-----~~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 170 VGADVEK-MKADAKLI-----NPRAKIIEMDLKTGKGF 201 (221)
T ss_dssp HTCCHHH-HHHHHHHH-----CTTSEEEECBTTTTBTH
T ss_pred hhhHHHH-HHHHHHHh-----CCCCeEEEeecCCCCCH
Confidence 1 1111 12222222 13457889999998887
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=116.86 Aligned_cols=140 Identities=16% Similarity=0.101 Sum_probs=91.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceee-cCCCCCchhhhhhhHHH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVV-DPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~-~~~~~~~~~~~~~~~~~ 381 (551)
+++|+++|.|||||||++|+|.+.+ ...++..|+||+ ...+.+++..+.++||||+. ... ..+++++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~--~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~---~~ve~~gi--- 314 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN---DLVERLGI--- 314 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHT--BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC---TTCCCCCH---
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCC--CCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch---hhHHHHHH---
Confidence 5789999999999999999999997 367899999996 34466788889999999997 432 33444443
Q ss_pred hhhhhhccccCc-------cccccccc-------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 382 NRFQCSLVNSPV-------LKGKVLQT-------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 382 ~~~~~~~~~~~~-------~~~~~~~~-------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
.++...+..+|+ ..+.+.++ ...+.++|+||||++.. .. .+.+.+.+...
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~------------~~----~~~~~~~~~~~ 378 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK------------IN----EEEIKNKLGTD 378 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC------------CC----HHHHHHHHTCS
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc------------cC----HHHHHHHhcCC
Confidence 222223333432 22222222 24678999999999321 01 12222223222
Q ss_pred cchhhh--ccchH-HHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.|.+.+ ++|.+ +++++.+.+.+
T Consensus 379 ~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 379 RHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555 88888 99999988754
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-09 Score=112.82 Aligned_cols=142 Identities=14% Similarity=0.204 Sum_probs=70.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
..++|+++|.|||||||++|+|++.+ ...++..|+||+. ..+..++.++.++||||+.+.. ..++.++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~--~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~---~~ve~~gi--- 303 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE--RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG---EEIEHEGI--- 303 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch---hHHHHHHH---
Confidence 35789999999999999999999987 3678999999973 3466688889999999997633 23344432
Q ss_pred hhhhhhccccCcc-------ccccc----cc-------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHH
Q psy11743 382 NRFQCSLVNSPVL-------KGKVL----QT-------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISA 443 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~~~----~~-------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (551)
.++...+..+|+. .+.+. .+ ..++.++|+||+|++-... . ..+.+.+.
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~------------~--~~~~l~~~ 369 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANAD------------A--LIRAIADG 369 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTH------------H--HHHHHHHH
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccc------------h--hHHHHHhc
Confidence 3444455555542 22222 00 2477899999999932110 0 01112221
Q ss_pred HHhccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 444 LRKDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 444 l~~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
.+.|.+.+ ++|.+ +++++.+.+...
T Consensus 370 --~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 --TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp --HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred --CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 13455555 88999 999999988664
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.9e-09 Score=111.59 Aligned_cols=245 Identities=37% Similarity=0.550 Sum_probs=148.8
Q ss_pred cCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC------------------------------
Q psy11743 303 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE------------------------------ 352 (551)
Q Consensus 303 ~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~------------------------------ 352 (551)
....++|+++|.+|+||||++|+|++..+.+.+++..|+|++...+.+++
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45678999999999999999999999987556899999998755444332
Q ss_pred ------------CCccccCCceeecCCCC--Cch--hhhhhhHHHhhhhhhccccCccc-c---------ccccccccee
Q psy11743 353 ------------REGSVPGNALVVDPKKQ--FRP--LDKFGNSFLNRFQCSLVNSPVLK-G---------KVLQTPEVAR 406 (551)
Q Consensus 353 ------------~~~~l~dt~gi~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~ 406 (551)
.++.|+||||+.++... ... .......++.++...+.=.|+.. + ........+.
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv 221 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI 221 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE
Confidence 36889999999874321 111 11112222222211111111111 1 1122234667
Q ss_pred EEEecccCCCCccchhhhhhhh--------------------------hc--cChhhHH---HHHHHHHHhccchhhh-c
Q psy11743 407 VYIGSFWDQPLVHDVNRRLFED--------------------------RS--STSNSVQ---AYIISALRKDMPSVFG-K 454 (551)
Q Consensus 407 v~~~~~wd~~~~~~~~~~l~~~--------------------------~~--~~~~~~~---~~~~~~l~~~~~~~~~-~ 454 (551)
++|+||+|+.-. .+...+... .. .....+. +.++..+ ...|.-.. .
T Consensus 222 ilVlNK~Dl~~~-~el~~~~~~l~~s~~~i~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~E~e~l~~~l-~elP~~~~v~ 299 (550)
T 2qpt_A 222 RVVLNKADMVET-QQLMRVYGALMWALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDI-QGLPRHAALR 299 (550)
T ss_dssp EEEEECGGGSCH-HHHHHHHHHHHHHHHHHHCCSSCCCEEESCCSSSCCSSCTTHHHHHHHHHHHHHHH-HTTGGGHHHH
T ss_pred EEEEECCCccCH-HHHHHHHHHhhcchhheeechHhhhhccccCCCCcccCCCCHHHHHHHHHHHHHHh-hhccHHHHHH
Confidence 999999998422 221111100 00 0000011 2333333 33343221 1
Q ss_pred ----cchHHHHHHHHHHHHHHHhhhhccCccccchHH---HhhhHHHHHHHHHHHhccCCCCCCChHHHHHHhccCCCCC
Q psy11743 455 ----EGKKKELIKKLDEIYKQIQREYQISPVFGKKKE---LIKKLDEIYKQIQREYQISPGDFPKVEKMQELLQHHDFTK 527 (551)
Q Consensus 455 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 527 (551)
-.++...+.-...++.+. ..+++.++|+++. ..+.|..+++++...++++.+|||+.+.+++.+...||+.
T Consensus 300 ~i~~~~~~~~~~~I~a~I~v~~--~sqk~i~iGk~g~~~~li~~l~~~~~~i~~~~~~~~~d~p~~~~~~~~~~~~~~~~ 377 (550)
T 2qpt_A 300 KLNDLVKRARLVRVHAYIISYL--KKEMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTK 377 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHSCSSSCHHHHHHHHHHTHHHHHHHHHHTTCCCTTTCCCHHHHHHHHHHSCGGG
T ss_pred HHHHHhccCCeEEEEEEEEEee--cccceeEECCchHHHHHHHhHHHHHHHHHHHhCCCccccCCHHHHHhhhhhCChhh
Confidence 001112222222344322 3356668997554 4456677999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHhHhhhhhcC
Q psy11743 528 FQTLRPRLIEVADKMLAEDIAHLL 551 (551)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~ 551 (551)
|+.+++++.+.|+.++++|||+|+
T Consensus 378 f~~l~~~~~~~l~~~~~~d~~~l~ 401 (550)
T 2qpt_A 378 FHSLKPKLLEALDDMLAQDIAKLM 401 (550)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHhhhHhhHHHHH
Confidence 999999999999999999999874
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.8e-09 Score=112.31 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=79.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
...+|+++|.||+||||++|+|++.+ ...++..++||+ ...+..++.++.++||||+.+.. ..++.++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~---~~ve~~gi--- 294 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD--RAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS---DQVEKIGV--- 294 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH--BSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch---hHHHHHHH---
Confidence 35789999999999999999999987 356888899986 23466788899999999997633 33444443
Q ss_pred hhhhhhccccCccc-------cccccc-------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 382 NRFQCSLVNSPVLK-------GKVLQT-------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 382 ~~~~~~~~~~~~~~-------~~~~~~-------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
.++...+..+|+.. +.+..+ ...+.++|+||+|++-.... . .. +.+...
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~-~--------~~--------~~~~~~ 357 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLI-T--------SL--------EYPENI 357 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGS-T--------TC--------CCCTTC
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhh-H--------HH--------HHhccC
Confidence 44445555666421 211111 23578999999998321110 0 00 001122
Q ss_pred cchhhh--ccchH-HHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.|.+.+ ++|.+ +++++.+.+..
T Consensus 358 ~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 358 TQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444 78888 88888887755
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-09 Score=102.84 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=47.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCc-ccc---eEEEEecCCCccccCCceeecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPT-TDR---FIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~-~tr---~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
..++|+++|.+|+||||++|+|++... ...+..++ +|+ .....+++..+.++||||+.+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQA--FESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCC--SCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 467999999999999999999999873 33444454 554 23355678899999999998754
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=109.16 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=43.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcE-EEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKI-RIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~v-ilVlNK~Dl 213 (551)
..++||||||....... +...+... +-.+|.+++|+|+.. +.. ....+..+.+. .|+ .+|+||+|.
T Consensus 184 ~DvvIIDTpG~~~~~~~-------l~~el~~~~~~i~pd~vllVvDa~~-g~~--~~~~a~~~~~~-~~i~gvVlNK~D~ 252 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDS-------LFEEMLQVANAIQPDNIVYVMDASI-GQA--CEAQAKAFKDK-VDVASVIVTKLDG 252 (504)
T ss_dssp CCEEEEEECCCCTTCHH-------HHHHHHHHHHHHCCSEEEEEEETTC-CTT--HHHHHHHHHHH-HCCCCEEEECTTS
T ss_pred CcEEEEeCCCCcccchh-------HHHHHHHHHhhhcCceEEEEEeccc-ccc--HHHHHHHHHhh-cCceEEEEeCCcc
Confidence 46999999999753211 22222222 237999999999985 433 33444444432 564 899999999
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 253 ~~~ 255 (504)
T 2j37_W 253 HAK 255 (504)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.6e-09 Score=96.50 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=41.4
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
.....++|+++|.+||||||++|.|.+..+..+...+..+.+ ...+...+..+.++||||...
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN-VETFEKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE-EEEEEETTEEEEEEEECCSGG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee-EEEEEeCCEEEEEEECCCCHh
Confidence 344567999999999999999999999875322223333322 222345677788999999753
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.1e-09 Score=99.69 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCC--cccc---eEEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP--TTDR---FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~--~~tr---~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
..++|+++|.+|+||||++|.|++..+ ..+..+ ++|+ .....+++..+.++||||+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~---~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~ 93 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV---FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV 93 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC---SCC-------CCSCEEEEEEETTEEEEEEECCSCC----
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc---CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC
Confidence 467999999999999999999999874 333333 4453 233556788899999999987653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.3e-09 Score=95.08 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=41.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
..+++++|.+||||||++|.|.+..+ .++..|++|. ...+.+++..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV---YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS---SCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe---eccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 46899999999999999999998763 4566677663 2335556778899999998753
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=6e-09 Score=107.47 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=70.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
+...+|+|+|.||||||||+|+|.+.. +.++++|.||+. ..+.+.+.++.|+||||+...... ....++.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~---~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~---~~~~g~~- 142 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTE---SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD---GRGRGKQ- 142 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBC---CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--------CHHHH-
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh---hhHHHHH-
Confidence 344689999999999999999999987 788999999963 236678999999999999864322 1223333
Q ss_pred HhhhhhhccccCcccccc--------------------cccccceeEEEecccCC
Q psy11743 381 LNRFQCSLVNSPVLKGKV--------------------LQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~v~~~~~wd~ 415 (551)
+...++.+|++.-.. ..-.+.+.+++.||+|.
T Consensus 143 ---~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 143 ---VIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp ---HHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ---HHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 344555666432110 11123456888999997
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=93.22 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=42.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecCCCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~~~~~l~dt~gi~~~ 366 (551)
++|+++|.+|+||||++|.|.+.. ...+..|++|+. ...... .+.++||||+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC---CSSSSSTTCTTSCEEEEET--TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC---CccCCCCCccceeEEEecC--CEEEEECCCcccc
Confidence 579999999999999999999987 356667777753 333333 7889999997543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=93.63 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=77.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|.|.+..+. ....++++. ...+..++ ..+.++||||......... .
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~ 77 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS---GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS-------T 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG-------G
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH-------H
Confidence 4579999999999999999999988742 333444442 22344455 4577889999554321111 1
Q ss_pred HHhhhhhhccccCccc------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 380 FLNRFQCSLVNSPVLK------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
++..+...+.=.|+.. ........++.++|+||+|++- ...... .....+...+ .
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------~~~~~~-~~~~~~~~~~--~ 144 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE----------RKVVET-EDAYKFAGQM--G 144 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG----------GCCSCH-HHHHHHHHHH--T
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch----------hcccCH-HHHHHHHHHc--C
Confidence 1111100000001110 0111224578899999999831 111110 1112222222 3
Q ss_pred cchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
+|.+.+ ++|.+ +++++.+.+....
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555 88888 9999998876543
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=97.97 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=42.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~ 365 (551)
...++|+++|.+||||||++|+|++..+ .++..+++|+... ....+..+.++||||..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV---DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE---EEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 3568999999999999999999999874 3566777776443 234567788999999865
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.4e-09 Score=96.63 Aligned_cols=63 Identities=17% Similarity=0.019 Sum_probs=40.6
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...+.++|+++|.+|+||||++|.|.+.........+..+. ....+.+++..+.++||||...
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSSCEEEEEEECCSTT
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECCEEEEEEECCCCHH
Confidence 34567899999999999999999999876211111111111 1233455678889999999543
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-08 Score=90.27 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
.+.++|+++|.+|+||||++|+|.+..+. ....++++. ...+.+++..+.++||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT---EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS---CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc---cCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 36789999999999999999999998742 333444442 333556778888999999654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=90.49 Aligned_cols=58 Identities=14% Similarity=-0.036 Sum_probs=35.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..+|+++|.+||||||++|.|.+... ...++.+++++.......+. .+.+.||||...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEEETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc--cCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 46899999999999999999998763 46667777776544555444 456789999654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=92.27 Aligned_cols=59 Identities=20% Similarity=0.040 Sum_probs=39.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+. .....++++. ......++. .+.++||||...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFL--AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--CCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4579999999999999999999998752 2233344432 222344443 577889999543
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-08 Score=89.29 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=38.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..++|+++|.+||||||++|.|.+..+ ....+.++++. ...+..++. .+.++||||...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQE--RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCC--ccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 457899999999999999999999874 34445566664 333445544 567899999764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-08 Score=91.75 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=78.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCC--ccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
++.+|+++|.+|+||||++|+|.+..+. ...+.|+. ......++.. +.++||||...... ....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV----DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC----CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHH
Confidence 3578999999999999999999988742 22223332 2334444444 56799999654221 1112
Q ss_pred HHhhhhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++..+...+.=.|+.. ........++.++|+||+|++.. .........+...+
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~- 138 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR------------TVDTKQAQDLARSY- 138 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC------------SSCHHHHHHHHHHH-
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc------------ccCHHHHHHHHHHc-
Confidence 2222111111111111 01112246788999999998411 11111223333333
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHHHHh
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYKQIQ 473 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~ 473 (551)
..|.+.+ ++|.+ ++++..+.+.+...+
T Consensus 139 -~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 139 -GIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp -TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 2455555 88889 999998887664433
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=105.12 Aligned_cols=108 Identities=21% Similarity=0.228 Sum_probs=51.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccc-cccccccceeEEecC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK-FGNSFLNRFQCSLVN 132 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~-~g~~~~~~~~~~~~~ 132 (551)
....+|+|+|.+|||||||+|+|++... .+...|.+|.+....... +++..++.+.+ +...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~------v~~~r~~~l~~~~~p~----------- 81 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVP------VPDERFDFLCQYHKPA----------- 81 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEE------CCCHHHHHHHHHHCCS-----------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEE------ECCccceeeccccCcc-----------
Confidence 3457899999999999999999999875 344445555444332211 11111100000 0000
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
......+.+|||||+..+... +..+.......++++|++++|+|+.+
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~----~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHN----GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC---------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccch----hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 000034899999999864321 11233345667899999999999974
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-08 Score=92.97 Aligned_cols=147 Identities=13% Similarity=-0.005 Sum_probs=84.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
++++++++|.+||||||++|.|.+.. ..++..|++|. ...+..++..+.++||||..... ....-+.+...++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN---VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT-ANSIDEIIARDYI 81 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS-SSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc-cccHHHHHHHHHH
Confidence 45789999999999999999999876 45667777774 23355667888999999986532 1111112222222
Q ss_pred hh--hhhhccccCcc-------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchhh
Q psy11743 382 NR--FQCSLVNSPVL-------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSVF 452 (551)
Q Consensus 382 ~~--~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 452 (551)
.. +...+.=.|.. .-.......++.++|+||+|++ ... ......+.+.+.+. .+.+.
T Consensus 82 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----------~~~--~~~~~~~~~~~~~~--~~~~~ 147 (188)
T 2wjg_A 82 INEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLA----------KSL--GIEIDVDKLEKILG--VKVVP 147 (188)
T ss_dssp HHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHH----------HHT--TCCCCHHHHHHHHT--SCEEE
T ss_pred hccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcc----------ccc--cchHHHHHHHHHhC--CCeEE
Confidence 11 10000000111 0111222467889999999982 111 11112233434332 34444
Q ss_pred h--ccchH-HHHHHHHHHHH
Q psy11743 453 G--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 453 ~--~~~~~-~~l~~~~~~~~ 469 (551)
+ +++.+ +++++.+....
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHH
Confidence 4 77877 88888887655
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-08 Score=92.81 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...+++++|.+|+||||++|.|.+..+ ..++..+++|+ ...+.+++..+.++||||...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 356899999999999999999999873 45677888885 233556777788999999865
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-08 Score=87.82 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=37.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~ 364 (551)
+.+|+++|.+|+||||++|+|.+..+.. ...+..++.....+..++. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 4689999999999999999999887431 1111111112233444443 37789999953
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-08 Score=89.47 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=39.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
++++++|.+|+||||++|.|.+..+ ..++..+++|+ ......++..+.++||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS--AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe--eeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence 5799999999999999999999873 34566677764 2334556778899999998764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-08 Score=90.22 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=38.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~ 364 (551)
..++|+++|.+|+||||++|+|.+..+. ....+..+. ...+..++. .+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC---C----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 4578999999999999999999988743 222232222 233444443 67889999953
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=90.34 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=75.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecC-----------CCccccCCceeecCCCCCc
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDE-----------REGSVPGNALVVDPKKQFR 371 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~-----------~~~~l~dt~gi~~~~~~~~ 371 (551)
..++|+++|.+|+||||++|+|.+..+... ..+..+.+. ...+..++ ..+.++||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSK-FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------ 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcC-cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH------
Confidence 457999999999999999999999875321 111111111 12233333 3677899999632
Q ss_pred hhhhhhhHHHhhhhhhccccCc-------ccccccc--------------cccceeEEEecccCCCCccchhhhhhhhhc
Q psy11743 372 PLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQ--------------TPEVARVYIGSFWDQPLVHDVNRRLFEDRS 430 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~ 430 (551)
|.. .....+..+|+ ..+.++. ...++.++|+||+|+.. ...
T Consensus 83 ----~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----------~~~ 144 (195)
T 3bc1_A 83 ----FRS----LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED----------QRA 144 (195)
T ss_dssp ----GHH----HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG----------GCC
T ss_pred ----HHH----HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc----------ccc
Confidence 111 11122223332 1111111 15678899999999821 111
Q ss_pred cChhhHHHHHHHHHHhccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 431 STSNSVQAYIISALRKDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
... .....+...+ ..+.+.+ +++.+ ++++..+.+.+
T Consensus 145 ~~~-~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 145 VKE-EEARELAEKY--GIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp SCH-HHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCH-HHHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 111 1122222322 2455555 78888 99998887755
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-07 Score=96.92 Aligned_cols=116 Identities=22% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCC----CCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEe
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPG----IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSL 130 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~----~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~ 130 (551)
....|+|+|++|+|||||+|.|+|...+. ...+.. ++... .+ + +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~-~t~~~-~v-~-----------------------------q 115 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE-VTMER-HP-Y-----------------------------K 115 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCC-EE-E-----------------------------E
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCee-cceeE-Ee-c-----------------------------c
Confidence 34589999999999999999999954210 011111 11000 00 0 0
Q ss_pred cCCCCccCeEEEeCCCCCCCcccccccccchHHHHHH-HHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEc
Q psy11743 131 VNSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEW-FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLN 209 (551)
Q Consensus 131 ~~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~-~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlN 209 (551)
.+....++++|+||+.... . ...+.+.. .+...+..++ ++... ...+...++..+...++|+++|+|
T Consensus 116 --~~~~~~ltv~D~~g~~~~~-~------~~~~~L~~~~L~~~~~~~~-lS~G~--~~kqrv~la~aL~~~~~p~~lV~t 183 (413)
T 1tq4_A 116 --HPNIPNVVFWDLPGIGSTN-F------PPDTYLEKMKFYEYDFFII-ISATR--FKKNDIDIAKAISMMKKEFYFVRT 183 (413)
T ss_dssp --CSSCTTEEEEECCCGGGSS-C------CHHHHHHHTTGGGCSEEEE-EESSC--CCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred --ccccCCeeehHhhcccchH-H------HHHHHHHHcCCCccCCeEE-eCCCC--ccHHHHHHHHHHHhcCCCeEEEEe
Confidence 1112458999999986421 1 12222222 2345566665 77652 467777888888888899999999
Q ss_pred CCCCC
Q psy11743 210 KADMV 214 (551)
Q Consensus 210 K~Dl~ 214 (551)
|.|++
T Consensus 184 kpdll 188 (413)
T 1tq4_A 184 KVDSD 188 (413)
T ss_dssp CHHHH
T ss_pred cCccc
Confidence 99975
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-08 Score=99.75 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=37.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccc-----cCCCcccc-e--EEEEecCC--CccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI-----GPEPTTDR-F--IAVMYDER--EGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v-----~~~~~~tr-~--~~~~~~~~--~~~l~dt~gi~~~ 366 (551)
..+|+++|.+|+||||++|+|++.+...... ...++++. . ..+..++. .+.++||||+.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 4689999999999999999999987422111 01233332 1 22223343 6789999998544
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.7e-08 Score=91.12 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=38.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEec--CCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
.+.++|+++|.+||||||++|.|.+..+. ....+.+. .......+ ...+.++||||...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS---EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC---SCCCCCSEEEEEEEEC----CEEEEEEEECCCCT
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEECCEEEEEEEEECCCccc
Confidence 35679999999999999999999998753 11112221 12222222 34567899999654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.3e-08 Score=89.45 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=38.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEec--CCCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~--~~~~~l~dt~gi~ 364 (551)
..+|+++|.+|+||||++|.|.+..+..........+++. ..... ...+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCch
Confidence 4689999999999999999999886532222222222221 22222 2357789999964
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-08 Score=89.43 Aligned_cols=143 Identities=12% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|+|.+..+ .....++++. ...+..++ ..+.++||||..... .....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC---CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHH
Confidence 457999999999999999999999874 2333344432 23344444 357788999954321 11111
Q ss_pred HHhhhhhhccccCcccc-------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 380 FLNRFQCSLVNSPVLKG-------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
++..+...+.=.|+... .......++.++|+||+|+.-. ..... .....+...+
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~----------~~~~~-~~~~~~~~~~-- 151 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK----------KVVDY-TTAKEFADSL-- 151 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT----------CCSCH-HHHHHHHHHT--
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc----------cccCH-HHHHHHHHHc--
Confidence 12111111110111111 1111236788999999998311 11110 1122222322
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
.+|.+.+ ++|.+ ++++..+.+.+.
T Consensus 152 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 152 GIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3455555 88888 999888877553
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.3e-08 Score=89.63 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec-C--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD-E--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~-~--~~~~l~dt~gi~ 364 (551)
..++|+++|.+|+||||++|.|.+..+.. ...+..+.+. ...+..+ + ..+.++||||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 45799999999999999999999987431 1112222222 2223333 2 356789999954
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=8.2e-08 Score=88.02 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=40.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
+.++|+++|.+|+||||++|.|.+..+. ....+..+.+.......++ ..+.++||||...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence 4579999999999999999999977642 2222222333333344454 3457899999764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-08 Score=107.50 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=32.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t 343 (551)
.+++|+++|.+|+||||++|+|+|..+ .+++..|+|.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~--~~v~~~p~T~ 104 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL--LPSDVNPCTA 104 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC--SCCCCCTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCCCCcc
Confidence 468999999999999999999999974 6788888773
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=98.63 E-value=8.5e-08 Score=86.59 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=36.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..+|+++|.+|+||||++|+|.+..+. ....++++. ...+..++. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN---PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC---C-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 468999999999999999999998742 223333332 222344443 567889999654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=8.5e-08 Score=99.46 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
....+|+|+|.+|||||||+|+|+|...+.+...|.+|.+.......- ++..++.+.. .+ -+.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v------~~~r~~~l~~---~~--------~~~ 80 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAV------PDERFDWLCE---AY--------KPK 80 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEE------CCHHHHHHHH---HH--------CCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeee------CCcchhhhhh---hc--------ccc
Confidence 346799999999999999999999987644555665565544332211 1100000000 00 000
Q ss_pred CCc-cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 134 PVL-KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 134 ~~l-~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
... ..+.++||||+..+... +..+.......+..+|++++|+|+..
T Consensus 81 ~~v~~~i~lvD~pGl~~~~s~----~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 81 SRVPAFLTVFDIAGLTKGAST----GVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEECEEEEEECTGGGCCCCCS----SSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCcceEEEeccccccCCcH----HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 000 24789999999864321 22233455667789999999999873
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-08 Score=97.21 Aligned_cols=147 Identities=15% Similarity=0.084 Sum_probs=79.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC---CCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE---REGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~---~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
...+|+++|.+|+||||++|+|++..+. .......+++. .......+ ..+.++||||....... ...+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~ 81 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL-------KDVY 81 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC-------CHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH-------HHHH
Confidence 4579999999999999999999988753 33334444443 22222222 34778999996543211 1111
Q ss_pred HhhhhhhccccCcccccccc-------------cccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH-h
Q psy11743 381 LNRFQCSLVNSPVLKGKVLQ-------------TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR-K 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~ 446 (551)
+..+...+.=.|+..+.+++ ...++.++|+||+|+.-. ... ..+....... .
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----------~~~----~~~~~~~~~~~~ 147 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR----------QKI----SKKLVMEVLKGK 147 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--------------C----CHHHHHHHTTTC
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc----------ccc----CHHHHHHHHHHc
Confidence 11111111111222221111 125788999999998311 000 0111212221 2
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHHHHHh
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIYKQIQ 473 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~~~~~ 473 (551)
..+.+.+ ++|.+ ++++..+.+.+....
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 3455555 88888 999999988765443
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=9.4e-08 Score=86.29 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
+..+|+++|.+|+||||++|.|.+..+. ....+.++++. .....+. ...+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFD-PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 3578999999999999999999999753 23444455553 2233343 3567789999974
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=89.35 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=76.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|+|.+..+. ....++++. ...+.+++ ..+.++||||....... ...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN---PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI-------TTA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC---CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-------HHH
Confidence 4679999999999999999999988742 233343332 22344454 46788999996532211 111
Q ss_pred HHhhhhhhccccCccccc-------------ccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 380 FLNRFQCSLVNSPVLKGK-------------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
++..+...+.=.|+..+. ......++.++|+||+|+... .........+...+
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~-- 154 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR------------VVTADQGEALAKEL-- 154 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC------------CSCHHHHHHHHHHH--
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc------------ccCHHHHHHHHHHc--
Confidence 111111111100111110 011235788999999998211 00001122333333
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..|.+.+ ++|.+ ++++..+.+..
T Consensus 155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 155 GIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp TCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2355555 78888 99998887754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-08 Score=86.01 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=39.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+.. ...+..+ . ...+..++ ..+.++||||...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK---DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC---CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 45789999999999999999999986421 2222222 1 22233443 3677889999654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-08 Score=90.28 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=44.0
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...+..+|+++|.+|+||||++|.|.+..+ ....+..+.+. ..+.+++..+.++||||...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNV-EEIVINNTRFLMWDIGGQES 77 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSSC-EEEEETTEEEEEEEESSSGG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcCceee-EEEEECCEEEEEEECCCCHh
Confidence 344678999999999999999999999876 34444445443 33445678889999999754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=87.70 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
++.+|+++|.+|+||||++|.|.+..+.. ....++. ...+..++. .+.++||||...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD----EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcc----ccCCccceEEEEEEEECCEEEEEEEEECCChHH
Confidence 45799999999999999999999886421 2222222 223344443 477899999653
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-08 Score=91.00 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=36.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...++|+++|.+|+||||++|+|.+..+.. ...+..+.+. ...+..++ ..+.++||||..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 445789999999999999999999886421 1112222222 22244444 357789999953
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=88.42 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=76.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCC--CccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|+|.+..+. ...+.|+ ....+..++. .+.++||||.... . .....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~---~~~~~ 81 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----A---AIRDN 81 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC----TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----H---HHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----H---HHHHH
Confidence 4579999999999999999999988742 1222222 2223444443 5778999995421 1 11112
Q ss_pred HHhhhhhhccccCcccc--------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLKG--------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++..+...+.=.|+... .......++.++|+||+|++- ......+ ....+....
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----------~~~~~~~-~~~~~~~~~- 149 (206)
T 2bov_A 82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED----------KRQVSVE-EAKNRAEQW- 149 (206)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG----------GCCSCHH-HHHHHHHHH-
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc----------cccccHH-HHHHHHHHh-
Confidence 22221111111111110 011123678899999999821 1111111 112222222
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..+.+.+ ++|.+ ++++..+.+..
T Consensus 150 -~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 150 -NVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp -TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2355545 88888 99998887755
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=88.01 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=25.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
...++|+++|.+|+||||++|+|++..+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 3568999999999999999999999875
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=85.30 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|.|.+..+. .....|+ ....+..++ ..+.++||||..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC----CCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 3568999999999999999999998742 1122222 122234444 357789999954
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=85.71 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=76.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
..++|+++|.+|+||||++|+|.+..+. ...+.|+. ......++ ..+.++||||...... ....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~ 76 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV----SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-------MREQ 76 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC----SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-------CHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc----cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH-------HHHH
Confidence 4579999999999999999999998642 23333332 22234444 3567899999653221 1111
Q ss_pred HHhhhhhhccccCcccc--------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLKG--------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++..+...+.=.|+... .......++.++|+||+|+.- ...... .....+...
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----------~~~v~~-~~~~~~~~~-- 143 (181)
T 2fn4_A 77 YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES----------QRQVPR-SEASAFGAS-- 143 (181)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG----------GCCSCH-HHHHHHHHH--
T ss_pred HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc----------ccccCH-HHHHHHHHH--
Confidence 22221111111111110 111234678899999999821 111110 111122221
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
...+.+.+ ++|.+ +++++.+.+.+.
T Consensus 144 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 144 HHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 23344444 78888 899888877654
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=90.52 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
.++|+|+|.+|||||||+|+|++..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-08 Score=89.86 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=40.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
++.+|+++|.+|+||||++|.|.+..+ ....+..+.+ ...+.+++..+.+.||||...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV--VTTKPTIGFN-VETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE--EEECSSTTCC-EEEEEETTEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc--CccCCcCccc-eEEEEECCEEEEEEECCCCHh
Confidence 578999999999999999999997764 3333333322 233455677888999999865
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=102.79 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=59.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCC--CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP--EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~--~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..+|+|+|.||||||||+|+|+|.... +..+. .++|.... ++.. .++.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~-~~~~~tt~~~T~gi~--~~~~---------------------------~~~~ 87 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKG-FSLGSTVQSHTKGIW--MWCV---------------------------PHPK 87 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSC-SCCCCSSSCCCCSEE--EEEE---------------------------ECSS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCc-cccCCCCCCceeEEE--Eeec---------------------------cccc
Confidence 368999999999999999999998753 12111 11222111 1100 0000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG 199 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 199 (551)
..-..+.+|||||+.+...... ..+........+ .++ ++|+|+.. .++..+..++..+.+
T Consensus 88 ~~~~~i~LiDTpGi~~~~~~~~--~~~~~~fala~l-lss--~lv~n~~~-~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 88 KPGHILVLLDTEGLGDVEKGDN--QNDSWIFALAVL-LSS--TFVYNSIG-TINQQAMDQLYYVTE 147 (592)
T ss_dssp STTCEEEEEEECCBCCGGGCCC--TTHHHHHHHHHH-HCS--EEEEEEES-CSSHHHHHTTHHHHT
T ss_pred CCCceEEEecCCCcCcccccch--hHHHHHHHHHHH-hcC--eEEEECCC-CccHHHHHHHHHHHH
Confidence 0014589999999987433111 111111111111 244 56677765 788888777766543
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=84.81 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=37.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecC--CCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
..+|+++|.+|+||||++|+|.+..+.. ...+.+. .......++ ..+.++||||...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVE---KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC---SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 4689999999999999999999876421 1112211 122233333 3567899999653
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-07 Score=86.15 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=75.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCC--CccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
...+|+++|.+|+||||++|.|.+..+. ...+.|+ ....+..++. .+.++||||.... . .....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~---~~~~~ 85 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----A---AIRDN 85 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----H---HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC----CcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----H---HHHHH
Confidence 4579999999999999999999998742 1222222 1222344443 5778999995421 1 11112
Q ss_pred HHhhhhhhccccCcccc--------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 380 FLNRFQCSLVNSPVLKG--------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
++..+...+.=.|+... .......++.++|+||+|++. ......+ ....+.+.+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----------~~~~~~~-~~~~~~~~~- 153 (187)
T 2a9k_A 86 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED----------KRQVSVE-EAKNRAEQW- 153 (187)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG----------GCCSCHH-HHHHHHHHT-
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc----------cCccCHH-HHHHHHHHc-
Confidence 22221111111111110 011123678899999999821 1111111 112222222
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..+.+.+ +++.+ ++++..+.+..
T Consensus 154 -~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 154 -NVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 2355555 78888 99988887754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=87.81 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=76.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCC--CccccCCceeecCCCCCchhhhhhhH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNS 379 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~ 379 (551)
...+|+++|.+|+||||++|+|.+..+. ....++.+ . ...+.+++. .+.++||||........ ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT---NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT-------SS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC---TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC-------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH-------HH
Confidence 3579999999999999999999998753 22223322 2 223444443 67889999954322111 11
Q ss_pred HHhhhhhhccccCcccc-------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 380 FLNRFQCSLVNSPVLKG-------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 380 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
++..+...+.=.|+..+ .......++.++|+||+|+.-. ..... .....+... .
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~----------~~~~~-~~~~~~~~~--~ 143 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK----------RVVEY-DVAKEFADA--N 143 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT----------CCSCH-HHHHHHHHH--T
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc----------cccCH-HHHHHHHHH--c
Confidence 11111000000011111 0111245788999999998311 01110 111222222 2
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..|.+.+ ++|.+ ++++..+.+..
T Consensus 144 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 144 KMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3455555 88888 99998887755
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=6e-08 Score=87.52 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=39.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
..+|+++|.+|+||||++|+|++..+. ....+..+.+. ......++ ..+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999999998753 12223333333 22333443 367789999943
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-08 Score=96.94 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=25.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+++|.+|||||||+|+|+|.....+...|+.|++.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~ 158 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ 158 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee
Confidence 3468999999999999999999999876566666655444
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=85.13 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=41.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+|+||||++|+|.+..+. ...+..+. ....+.+++..+.++||||...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~-~~~~~~~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV--TTIPTIGF-NVETVTYKNLKFQVWDLGGLTS 63 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCCCSSE-EEEEEEETTEEEEEEEECCCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCcc-ceEEEEECCEEEEEEECCCChh
Confidence 5679999999999999999999988753 11121121 1233455677888999999653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-07 Score=89.01 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=39.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+. ....+..+. ...+..++ ..+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4579999999999999999999998743 122233322 22234444 3577899999643
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-08 Score=101.38 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=45.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-CCccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-REGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-~~~~l~dt~gi~~~ 366 (551)
-+.|+++|.|||||||++|+|.+.. ..++..|.+|. ...+.+.+ ..+.++||||+...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~---~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK---PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 219 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC---CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC---CccccCCccccCceEEEEEeCCCceEEEecCCCCccc
Confidence 3579999999999999999999886 45677777774 22344544 77899999998753
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=87.40 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=41.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
....+|+++|.+|+||||++|+|.+..+.. ...+..+++. ...+... ...+.++||||...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 345799999999999999999999987532 1222233333 2223333 34677899999643
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.55 E-value=6.8e-08 Score=89.34 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=41.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+|+||||++|.|.+..+. ...+..+.+ ...+.+++..+.++||||...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HTSPTIGSN-VEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EEECCSCSS-CEEEEETTEEEEEEECCC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCCccc-eEEEEECCEEEEEEECCCCHh
Confidence 4689999999999999999999987752 333333322 233455678889999999854
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-08 Score=90.89 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCcc--ccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGS--VPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~--l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.+.+..+. +....|+. ...+..++..+. ++||||...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC----C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC----CCcCCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence 5689999999999999999999987643 22223332 223444555544 899999743
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=85.55 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=39.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|+|++..+.... .+..+.+. ...+... ...+.++||||..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 3568999999999999999999998753211 11222222 2233343 3467889999953
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=88.11 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=39.3
Q ss_pred cCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCC--ccccCCceee
Q psy11743 303 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 303 ~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~--~~l~dt~gi~ 364 (551)
.....+|+++|.+||||||++|.+++..+... ..|... ....+.+++.. +.+.||||..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQE---ESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC---CCTTCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC---cCCCcceEEEEEEECCEEEEEEEEECCCCh
Confidence 34567999999999999999999998875321 112111 12334455544 4568999964
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-08 Score=89.00 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
...++|+++|.+|+||||++|.|.+..+.....+..++++.. +.+..+.++||||....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----YDGSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C----CCCTTCSEEEETTCCBS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee----ecCCeEEEEECCCCchH
Confidence 456899999999999999999999987543333444444431 25678889999998653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=84.11 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=39.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
..++|+++|.+|+||||++|+|.+..+. .......+.+. ...+..++ ..+.++||||..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 4579999999999999999999998752 11222223332 22233433 457789999954
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=88.15 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEec--CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~--~~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|.|.+..+. ..+.+.++++.. ..+..+ ...+.++||||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFD-HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCC-TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 4579999999999999999999998753 345556666643 223333 3457789999954
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=84.34 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=39.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|+|.+..+.. ...+..+++. ......+ +..+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35689999999999999999999886531 1223333333 2223333 4467789999954
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.2e-08 Score=89.34 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=38.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~ 364 (551)
...+|+++|.+||||||++|.|.+..+.. ...+..+.+....+..++.. +.++||||..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPT-AYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC-ccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 45799999999999999999999987421 11111111122233444444 4789999954
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=84.86 Aligned_cols=57 Identities=23% Similarity=0.071 Sum_probs=33.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecC--CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
.+|+++|.+||||||++|.|.+.... .....+.+. ....+..++ ..+.+.||||...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGD--HAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCc--ccccCCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 57999999999999999999976531 111111112 122233444 3456789999764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=84.76 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCCC--ccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
...+|+++|.+|+||||++|.|.+..+. ....+.++ .......++.. +.++||||..... .....+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~ 86 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV---DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS-------AMREQY 86 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC---SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC-------SSHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH-------HHHHHH
Confidence 4568999999999999999999988642 11222222 12223445544 4459999954321 111122
Q ss_pred HhhhhhhccccCcccc--------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 381 LNRFQCSLVNSPVLKG--------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
+..+...+.=.|+..+ .......++.++|+||+|++-. .... ......+.+.+
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------~~v~-~~~~~~~~~~~-- 153 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL----------RKVT-RDQGKEMATKY-- 153 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT----------CCSC-HHHHHHHHHHH--
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc----------cCcC-HHHHHHHHHHh--
Confidence 2222111111111111 1122356788999999998311 0111 11122333333
Q ss_pred ccchhhh--c-cchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--K-EGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~-~~~~-~~l~~~~~~~~ 469 (551)
.+|.+.+ + ++.+ ++++..+.+.+
T Consensus 154 ~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 154 NIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp TCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 2555555 6 7888 88888887644
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=88.02 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEec--CCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|+|.+..+...... ..+.+....+..+ ...+.++||||...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEETTEEEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEECCEEEEEEEEeCCChHH
Confidence 467999999999999999999999865322111 1111212222233 33577899999643
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-07 Score=85.36 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=39.4
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
....+|+++|.+|+||||++|.|.+..+... ..+..+.+. ...+..++ ..+.++||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 3456899999999999999999999875311 111122222 22344444 3677899999653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=84.51 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=38.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~ 364 (551)
..+|+++|.+|+||||++|+|++..+. ....+.++. ...+..++ ..+.++||||..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 468999999999999999999988743 222333332 22233444 367789999954
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=87.34 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=76.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
....+|+++|.+||||||++|.|.+..+.. ...+..+++. ...+... ...+.++||||...- ......+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~ 92 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTP-AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RTITTAY 92 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCC-CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCc-ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHH
Confidence 346799999999999999999999987532 2222234343 2233333 445778999994321 1111111
Q ss_pred HhhhhhhccccCcccc-------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhc
Q psy11743 381 LNRFQCSLVNSPVLKG-------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKD 447 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 447 (551)
+..+...+.=.|+... .......++.++|+||+|++- . ........+.+...+ .
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~----------~-~~~~~~~~~~~~~~~--~ 159 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE----------E-RVVPTEKGQLLAEQL--G 159 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG----------G-CCSCHHHHHHHHHHH--T
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc----------c-cccCHHHHHHHHHHc--C
Confidence 1111111110111110 111124678899999999821 1 111111122233322 2
Q ss_pred cchhhh--ccchH-HHHHHHHHHHH
Q psy11743 448 MPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 448 ~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
++.+.+ ++|.+ ++++..+.+..
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355545 78888 88888887644
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=86.32 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=39.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
..++|+++|.+|+||||++|.|.+..+. ....+.++ . ...+..++ ..+.++||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFK---DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4579999999999999999999998742 22223322 1 22233444 467789999953
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-07 Score=86.29 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=40.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEe--cCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMY--DEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~--~~~~~~l~dt~gi~~ 365 (551)
...++|+++|.+|+||||++|+|.+..+... ..+..+.+. ...+.. .+..+.++||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 3457999999999999999999999875311 111222222 122333 344577899999754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-07 Score=82.76 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=72.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
..+|+++|.+|+||||++|.|.+..+... ..+..+......+..++. .+.++||||..... . ....++..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~---~~~~~~~~ 74 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-CDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----A---MRDQYMRT 74 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----H---HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc-cCCccceEEEEEEEECCEEEEEEEEECCCchhhh----H---HHHHhhcc
Confidence 45899999999999999999998864211 111111111222334433 46789999954321 1 11122222
Q ss_pred hhhhccccCcccccc--------------cccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPVLKGKV--------------LQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
+...+.-.|+....+ .....++.++|+||+|+.-. .........+.+.+ ..|
T Consensus 75 ~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~--~~~ 140 (166)
T 2ce2_X 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR------------TVESRQAQDLARSY--GIP 140 (166)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC------------CSCHHHHHHHHHHH--TCC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc------------ccCHHHHHHHHHHc--CCe
Confidence 211111111111100 11136788999999998321 01111222333333 235
Q ss_pred hhhh--ccchH-HHHHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+.+ ++|.+ +++++.+.+.
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 141 YIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp EEEECTTTCTTHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHH
Confidence 5544 77888 8888877653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=87.67 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=41.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+.++|+++|.+|+||||++|+|.+..+. ...+..+. ....+..++..+.++||||...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~-~~~~~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV--TTVPTVGV-NLETLQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE--EECSSTTC-CEEEEEETTEEEEEEEECCSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC--CcCCCCce-EEEEEEECCEEEEEEECCCCHh
Confidence 4689999999999999999999887642 22222221 1233455677888999999754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=88.02 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=35.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...++|+++|.+|+||||++|.|.+..+. ....+..+ . ...+..++ ..+.++||||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK---QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 34579999999999999999999988642 12222222 1 22234444 467889999964
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-07 Score=84.22 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=40.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.|.+..+.. ..+..+......+..++. .+.+.||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch
Confidence 45789999999999999999999987632 223233222333444443 456789999653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-07 Score=87.40 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=36.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
....+|+++|.+||||||++|.|.+..+. ...+.|+. ...+..++. .+.+.||||...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP----TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 35679999999999999999999987632 22233332 223444554 455899999754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-07 Score=100.46 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=48.4
Q ss_pred cCeEEEeCCCCCCCccccccc--ccchHHHHHHHHhc-cCEEEEEEeCCCCCC-ChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDR--GYDFTGVLEWFAER-VDRIILLFDAHKLDI-SDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~--~~~~~~~~~~~~~~-aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..++++|.||+.......++. ...+...+..++.+ ..++++++++.. +. +.....+++.+...+.+.|+|+||+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~-d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNV-DIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSS-CTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccc-hhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 569999999987532222221 12244455555544 356666766553 43 33446777778778899999999999
Q ss_pred CCCHH
Q psy11743 213 MVDHQ 217 (551)
Q Consensus 213 l~~~~ 217 (551)
++...
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 98643
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-07 Score=86.51 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecCC--CccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~~--~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|.|.+..+.. ...|.++. ...+..++. .+.++||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS---SCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc---ccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 45689999999999999999999987531 22233332 233444443 56788999954
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-07 Score=88.34 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
.+..+|+++|.+|+||||++|.|.+..+. ....+..+.+ ...+..++..+.++||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGFN-MRKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEE-EEEEEETTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCcee-EEEEEeCCEEEEEEECCCCH
Confidence 34579999999999999999999988753 1111212222 22344567788899999954
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=86.18 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=39.7
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...++|+++|.+|+||||++|+|.+..+.. ...+..+.+. ...+..++ ..+.++||||..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 355799999999999999999999887532 1122222222 23344444 467889999953
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9e-08 Score=88.26 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=42.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
..++++++|.+||||||++|.|.+..+ ..+.+..+.+. ..+.+++..+.+.||||..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~--~~~~~t~g~~~-~~~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI--SHITPTQGFNI-KSVQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC--EEEEEETTEEE-EEEEETTEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC--CcccCcCCeEE-EEEEECCEEEEEEECCCCH
Confidence 568999999999999999999998864 33444444332 2344567778899999964
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-07 Score=87.21 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=41.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+..+|+++|.+|+||||++|.|.+... ....+..+.+ ...+.+++..+.+.||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~t~~~~-~~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTISPTLGFN-IKTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCCCCSSEE-EEEEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--CcccccCccc-eEEEEECCEEEEEEECCCCH
Confidence 568999999999999999999998762 2222222222 22344567788899999974
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-07 Score=84.39 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=39.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.|.+..+.. ..|.... ...+..++..+.+.||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC----CCCCSSCCEEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc----ccCcCceeEEEEEECCEEEEEEEcCCCh
Confidence 378999999999999999999887532 2232222 23345567788899999974
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-07 Score=85.65 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=37.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
....+|+++|.+|+||||++|+|.+..+. ....+..+.+. ...+..++ ..+.++||||..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 35689999999999999999999998753 23333344443 23344443 457789999953
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.2e-08 Score=89.01 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=42.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.|.+..+. ...+..+.+ ...+.+++..+.+.||||...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~~~t~~~~-~~~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA--TLQPTWHPT-SEELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC--CCCCCCSCE-EEEEEETTEEEEEEECCCSGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--ccccCCCCC-eEEEEECCEEEEEEECCCCHH
Confidence 4569999999999999999999998753 233333332 334556777888999999764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-07 Score=86.14 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=38.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCcee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi 363 (551)
...+|+++|.+||||||++|+|.+..+. ....+..+. ...+..++ ..+.+.||||.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 4579999999999999999999988742 222232221 22234444 35778999995
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.1e-08 Score=99.02 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~ 328 (551)
..+.|+++|.||+||||++|.|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999997
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-07 Score=91.41 Aligned_cols=61 Identities=10% Similarity=0.174 Sum_probs=48.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-e--EEEEecCCCccccCCceeecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~--~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
..++|+++|.+|+||||++|+|++..+ ..++..+++|+ . .....++..+.++||||..+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV--VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 467999999999999999999999874 45677777774 2 3344567779999999987653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=87.61 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=38.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
++.+|+++|.+||||||++|.|.+..+. ...+..+.+ ...+.+++..+.+.||||...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~~t~~~~-~~~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG--QHVPTLHPT-SEELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCS-CEEEEETTEEEEEEEECC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCCCce-eEEEEECCEEEEEEECCCcHh
Confidence 4678999999999999999999987652 223333333 234556677888999999654
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-07 Score=84.52 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecC---CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDE---REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~---~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+.. ...+..+.. ....+.+++ ..+.+.||||...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 45799999999999999999999887531 111111211 123344444 5678899999643
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.46 E-value=5.9e-07 Score=83.64 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|+|.+..+... ..+..++.....+..++ ..+.++||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 467999999999999999999999875211 11111111222233443 4577899999765
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=94.68 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=38.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
.+.++++|.+|+||||++|.|.+.. ..++..+++|+ ...+.+++..+.++||||+.+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~---~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLT---QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC---ccccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 3469999999999999999999987 46677787774 344666778888999999765
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-07 Score=84.08 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=37.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|+|.+..+.. ...+..+. ...+..++. .+.++||||...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND---KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS---SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc---CCCCccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 35789999999999999999999887431 22232222 223344444 456779999543
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-07 Score=100.89 Aligned_cols=139 Identities=15% Similarity=0.088 Sum_probs=78.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC----CCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD----FPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFG 377 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~----~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~ 377 (551)
+.++|+++|.+++|||||+|+|.+.. ....+....+++|. .....+++..+.++||||..+ |
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~----------~- 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD----------L- 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH----------H-
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH----------H-
Confidence 45799999999999999999999886 33345555566663 233455778899999999632 2
Q ss_pred hHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHH
Q psy11743 378 NSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYII 441 (551)
Q Consensus 378 ~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~ 441 (551)
.......+..+|+ ..|...|+ ..++.|+|+||+|++-. ...+...+++.
T Consensus 87 ---~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~------------~~~~~~~~~l~ 151 (482)
T 1wb1_A 87 ---IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT------------EEIKRTEMIMK 151 (482)
T ss_dssp ---HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH------------HHHHHHHHHHH
T ss_pred ---HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc------------hhHHHHHHHHH
Confidence 2223333344443 22322222 45677999999998310 11111233333
Q ss_pred HHHH-----hccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 442 SALR-----KDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 442 ~~l~-----~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
+.+. ...|++.+ ++|.+ ++|++.+.+..
T Consensus 152 ~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 152 SILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 3332 13465555 77888 88888887754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-07 Score=84.89 Aligned_cols=57 Identities=25% Similarity=0.209 Sum_probs=38.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+..+|+++|.+|+||||++|.|.+..+.. ....|+ ....+..++. .+.++||||...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS----SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCC----CcCCcccceeEEEEEECCEEEEEEEEECCCCHh
Confidence 35689999999999999999999876421 112222 1222344444 345889999754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=88.66 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
...++|+++|.+|+||||++|+|.+..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3457999999999999999999998875
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.9e-07 Score=84.26 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~ 364 (551)
....+|+++|.+||||||++|.|.+..+.. ...+..+. ...+.+++ ..+.++||||..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE---RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC---CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 345789999999999999999999887521 11222221 22234444 467889999953
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.43 E-value=4.7e-07 Score=84.67 Aligned_cols=143 Identities=11% Similarity=0.117 Sum_probs=75.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
..+|+++|.+|+||||++|.|.+..+.. ...+..+++. ...+... ...+.++||||..... .....++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 79 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR-------TITTAYYR 79 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc-------chHHHhhc
Confidence 4689999999999999999999987532 1222223332 2223333 3467789999964211 11111111
Q ss_pred hhhhhccccCccccc-------------ccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 383 RFQCSLVNSPVLKGK-------------VLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 383 ~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
.+...+.=.|+..+. ......++.++|+||+|++-. .... ......+.+.+ ..+
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~----------~~~~-~~~~~~~~~~~--~~~ 146 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE----------RVVS-SERGRQLADHL--GFE 146 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS----------CCSC-HHHHHHHHHHH--TCE
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc----------cccC-HHHHHHHHHHC--CCe
Confidence 111111101111110 011246788999999998311 0011 11222333333 235
Q ss_pred hhhh--ccchH-HHHHHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.+.+ ++|.+ ++++..+.+..
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 4444 78888 99998887754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.2e-07 Score=86.67 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=38.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
..++|+++|.+||||||++|+|.+..+... ..+..+.+. ...+.+++ ..+.++||||...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 346899999999999999999999875311 111122222 22344444 4678899999543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-07 Score=93.31 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=56.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHH--HHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLE--WFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~--~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||....... ....+. ..+..+|.+++|+|+.. + ......+..+.+......+|+||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~-------lm~el~~i~~~~~pd~vlLVvDA~~-g--q~a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKA-------LIEEMKQISNVIHPHEVILVIDGTI-G--QQAYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHH-------HHHHHHHHHHHHCCSEEEEEEEGGG-G--GGHHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHH-------HHHHHHHHHHhhcCceEEEEEeCCC-c--hhHHHHHHHHHhhCCCeEEEEECCCCc
Confidence 35899999998753221 222222 22356899999999984 3 223344555554455677999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...... . .... ....|+.|++. |+++
T Consensus 253 ~~gG~~--l-s~~~-------~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 253 AKGGGA--L-SAVA-------ATGAPIKFIGT--GEKI 278 (443)
T ss_dssp SSHHHH--H-HHHH-------TTCCCEEEEEC--SSST
T ss_pred ccccHH--H-HHHH-------HHCCCEEEEEc--CCCh
Confidence 654321 1 1111 12347888886 6655
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.3e-07 Score=92.14 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+.|+++|.||+||||++|.|...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999743
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.3e-07 Score=86.29 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=37.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+.. ...|.++. ...+..++ ..+.++||||...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE---VYVPTVFENYVADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC---cCCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence 35689999999999999999999987531 11222222 22234444 3567889999653
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.42 E-value=5e-07 Score=83.60 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=40.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|+|.+..+. ....+..+.+. ...+... ...+.++||||...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 3578999999999999999999998753 12222233332 2223333 34577889999643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.8e-07 Score=91.52 Aligned_cols=60 Identities=23% Similarity=0.228 Sum_probs=47.7
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~~~~~~~l~dt~gi~~~ 366 (551)
...++++++|.+||||||++|.|.+.. ..++..+++|+... +..++..+.++||||....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK---PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDR 227 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC---CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCeeeceeEEEEEecCceEEEEeCCCcccc
Confidence 356899999999999999999999987 45677777776443 3335667889999998764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.5e-07 Score=82.94 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...+|+++|.+||||||++|.|.+..+.. ...+..+......+..++ ..+.+.||||..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence 45789999999999999999999987531 111111111122233333 356788999964
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-07 Score=87.18 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=32.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.|.+..+.. ...+.+. ....+..++. .+.++||||...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE---SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 45799999999999999999999876421 1112211 1222344443 577899999643
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.6e-07 Score=84.56 Aligned_cols=142 Identities=17% Similarity=0.200 Sum_probs=73.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCC--ccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
..+|+++|.+|||||||++.+.+..|... ..+..+.. ....+..++.. +.+.||+|... +.. +...++.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~-~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~----~~~---l~~~~~~ 84 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER----FRS---LIPSYIR 84 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTT----CGG---GHHHHHT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCC-cCCccceEEEEEEEEecceEEEEEEEECCCchh----hhh---HHHHHhc
Confidence 45899999999999999999998875321 11111222 12233444443 45789999542 111 1112222
Q ss_pred hhhhhccccCccc-------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 383 RFQCSLVNSPVLK-------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 383 ~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
.+...+.-.|+.. -.....+.++.|+|+||+|++. +.....+ ..+.+...+ .++
T Consensus 85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~----------~r~V~~~-e~~~~a~~~--~~~ 151 (216)
T 4dkx_A 85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD----------KRQVSIE-EGERKAKEL--NVM 151 (216)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG----------GCCSCHH-HHHHHHHHH--TCE
T ss_pred cccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh----------cCcccHH-HHhhHHHHh--CCe
Confidence 2222222112111 1222346788999999999821 1111111 122233333 234
Q ss_pred hhhh--ccchH-HHHHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+.+ ++|.+ ++++..+...
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~ 173 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAA 173 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHH
Confidence 3333 88998 9998887653
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-07 Score=86.09 Aligned_cols=57 Identities=21% Similarity=0.123 Sum_probs=38.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|.|.+..+. . ..|.... ...+..++..+.++||||...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE--E--EEEETTEEEEEEEETTEEEEEEECC----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc--c--cCCcCceeEEEEEECCEEEEEEECCCCHh
Confidence 4679999999999999999999987742 1 1221111 223445677888999999754
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-07 Score=88.49 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPK 367 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~ 367 (551)
+.++|+++|.+|+||||++|+|++... ..++..+++|. .....+++..+.++||||..+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV--VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC--SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 468999999999999999999999873 46677777774 33355678889999999998643
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-07 Score=85.47 Aligned_cols=60 Identities=20% Similarity=0.130 Sum_probs=39.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+.. ...+..+......+..++. .+.+.||||...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence 45799999999999999999999887421 1111111112223344443 677899999754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-06 Score=79.12 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+. .....|+ ....+..++ ..+.+.||||...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence 3468999999999999999999988642 1222222 122344444 3567899999754
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-07 Score=98.41 Aligned_cols=141 Identities=11% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC-CccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER-EGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~-~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
..++|+++|.+|+||||++|+|++..+ ..++..+++|. ...+.+.+. .+.++||||..+.... .....
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~--~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l----~~~~~-- 104 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGEL----GRLRV-- 104 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTTEEEEEEECSSTTCCCTT----CCCCH--
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCC--CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccch----hHHHH--
Confidence 567999999999999999999999874 46777888874 344555544 7899999999864321 11110
Q ss_pred HhhhhhhccccCccc-----c---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 381 LNRFQCSLVNSPVLK-----G---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
.++...+..+|+.. + .......++.|+|+||+|++-.... ...+.+.+. .
T Consensus 105 -~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-------------~~~~~l~~~--~ 168 (423)
T 3qq5_A 105 -EKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-------------ELKGLYESR--Y 168 (423)
T ss_dssp -HHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-------------HHHHHSSCC--T
T ss_pred -HHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-------------HHHHHHHHH--c
Confidence 11222223333211 1 1222346788999999998321110 011111111 1
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
..|.+.+ ++|.+ +++++.+.+..
T Consensus 169 g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 169 EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2455555 88888 99998887754
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-07 Score=94.67 Aligned_cols=57 Identities=21% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCCCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~~~~l~dt~gi~ 364 (551)
.++++|+++|.+|||||||+|.|.+..+. ...|.... ...+...+..+.++||||-.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~----~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE----EEEEETTEEEEEEEETTEEEEEEECC---
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC----CcccccceEEEEEecCcEEEEEEECCCCH
Confidence 34568999999999999999999988742 22232222 23345567788899999943
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-07 Score=83.87 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=23.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.|.+..+. ....|+++. ...+.+++ ..+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN---STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEEEEEECCCCC-------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 3578999999999999999999977632 222333332 12234444 5677899999653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.6e-07 Score=84.08 Aligned_cols=57 Identities=25% Similarity=0.092 Sum_probs=38.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCC--ccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~--~~l~dt~gi~ 364 (551)
..++|+++|.+|||||||+|.|.+.... ....++++ ....+.+++.. +.+.||||..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGD---SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECC---GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCC---ccCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 4579999999999999999999876421 12334333 23334455544 4567999874
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=98.34 E-value=5.7e-07 Score=82.23 Aligned_cols=57 Identities=19% Similarity=0.068 Sum_probs=33.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+||||++|.+.+..+.. ....|+. ...+..++ ..+.+.||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPT----DYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC----CCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence 56899999999999999999999886421 1111221 11122233 3455899999653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.1e-07 Score=90.35 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=24.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 92 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt 92 (551)
.+|+++|.+|+|||||+|+|+|.....+...|+.|+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~ 135 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITK 135 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------C
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCcc
Confidence 699999999999999999999988644444444443
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=82.16 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=39.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec---CCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD---EREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~---~~~~~l~dt~gi~ 364 (551)
+.++|+++|.+|+||||++|.|.+..+.. ..+.++. ...+.++ +..+.++||||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD----TQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC----BCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc----ccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 46799999999999999999999987432 2233332 2234554 4557899999965
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.4e-08 Score=90.62 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=39.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+||||||++|+|.+..+. ....++++ . ...+..++ ..+.++||||...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYT---ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCC---CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 4579999999999999999999987642 22223333 2 23344444 3577889999543
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=92.13 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=43.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCC-c-EEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDD-K-IRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~-~-vilVlNK~D 212 (551)
..+.||||||...... .+...+... +..+|.+++|+|+.. +. .....+..+.. .. + ..+|+||+|
T Consensus 181 ~D~vIIDT~G~~~~~~-------~l~~~l~~i~~~~~~d~vllVvda~~-g~--~~~~~~~~~~~-~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEK-------GLLEEMKQIKEITNPDEIILVIDGTI-GQ--QAGIQAKAFKE-AVGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHH-------HHHHHHHHTTSSSCCSEEEEEEEGGG-GG--GHHHHHHHHHT-TSCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccH-------HHHHHHHHHHHHhcCcceeEEeeccc-cH--HHHHHHHHHhh-cccCCeEEEEeCCC
Confidence 4689999999875211 122222222 236899999999974 32 22233444443 24 5 889999999
Q ss_pred CCCH
Q psy11743 213 MVDH 216 (551)
Q Consensus 213 l~~~ 216 (551)
....
T Consensus 250 ~~~~ 253 (432)
T 2v3c_C 250 GSAK 253 (432)
T ss_dssp SCST
T ss_pred Cccc
Confidence 8753
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=98.30 E-value=9.9e-08 Score=90.88 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=42.3
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEe--cCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMY--DEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~--~~~~~~l~dt~gi~~ 365 (551)
....+|+++|.+||||||++|.++...+ .....+.++++.. ..... .+..+.++||||...
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH-TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 3457999999999999999999665532 1455666776653 33333 344577899999543
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.1e-07 Score=85.19 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...+|+++|.+||||||++|.|.+..+.. ...|... ....+..++ ..+.+.||||..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE---NYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS---SCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC---CcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 45799999999999999999999987531 1112221 122233333 356789999964
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-06 Score=80.63 Aligned_cols=58 Identities=14% Similarity=-0.016 Sum_probs=35.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCC--ccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
..+|+++|.+||||||++|.+.+... ..++..+.++ ....+.+++.. +.+.||+|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHD--SMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSC--CC----GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcC--CcCccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 46899999999999999999997542 1222222222 23334555554 45679998653
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=82.77 Aligned_cols=58 Identities=14% Similarity=-0.034 Sum_probs=36.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCC--ccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~--~~l~dt~gi~ 364 (551)
...+|+++|.+|||||||+|.+.+... ..+...+.++ ....+.+++.. +.+.||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~--~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD--SMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC--TTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 347899999999999999999997642 1222223222 23334455544 4567998743
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-06 Score=82.16 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=43.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...++++++|.+|+||||++|.|.+..+.....+..|+++.. +....+.++||||...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD----YDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT----GGGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE----eeCceEEEEECCCcHH
Confidence 357899999999999999999999987543333444444331 2566788999999854
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-07 Score=96.16 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=20.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 344 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr 344 (551)
.+++++|.|||||||++|+|.+.. +.++..|+||+
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~---~~~~~~p~tT~ 35 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD---VEIANYPFTTI 35 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCccc
Confidence 378999999999999999999987 67888998885
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-07 Score=102.53 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=81.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEe-cCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMY-DEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~-~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
++|+|+++|.+|+|||||+|+|.+.. ......+++|.. ..+.+ ++..+.|+||||...-. .....+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~---~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~----~~~~~~--- 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ---VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS----AMRARG--- 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH---HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT----TSBBSS---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH----HHHHHH---
Confidence 57899999999999999999999886 334455666642 22333 46689999999954311 111100
Q ss_pred HhhhhhhccccCccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHH------HH
Q psy11743 381 LNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISA------LR 445 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------l~ 445 (551)
+..+...+.=.|+..|...|+ ..++.|+|+||+|++-.+.+ . ....+... +.
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~----------~---v~~~l~~~~~~~e~~~ 139 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE----------K---VKKELLAYDVVCEDYG 139 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC----------S---SSSHHHHTTSCCCCSS
T ss_pred HccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH----------H---HHHHHHhhhhhHHhcC
Confidence 011111111112222333322 45678999999998422110 0 11111110 01
Q ss_pred hccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 446 KDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 446 ~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
...|.+.+ ++|.+ ++|++.+....+
T Consensus 140 ~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 140 GDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 12355555 88999 999999887653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-07 Score=85.41 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=36.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceE-EEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~-~~~~~~~~~~l~dt~gi~~ 365 (551)
...+++++|.+|+||||++|.|.+..+ ...+++.+|+|+.. ...+++ ...++||||...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-LARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEET-TEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccccCCCccceeeEEEEecC-CEEEEECcCCcc
Confidence 456899999999999999999998763 25667788888632 233433 778899999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=82.58 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=37.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~ 364 (551)
...+|+++|.+||||||++|.|.+..+.. ...+..+.+....+..++ ..+.+.||||..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 46799999999999999999999987531 111111222222233333 456788999964
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-06 Score=81.01 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=38.7
Q ss_pred ccCCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEe---cCCCccccCCceeec
Q psy11743 302 DFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY---DEREGSVPGNALVVD 365 (551)
Q Consensus 302 ~~~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~---~~~~~~l~dt~gi~~ 365 (551)
......+|+++|.+||||||++|++.++......++.. .+++...... ....+.+.||||...
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLE-STNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCC-CCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeec-cccceeeeeccCCCeeEEEEEECCCCHH
Confidence 34567899999999999999999999864222111111 1223333332 345678899999654
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-07 Score=82.33 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
...+|+++|.+||||||++|+|.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999998764
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.24 E-value=8e-07 Score=96.01 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=61.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCC-------------ccccc------CCCccc---ceEEEEecCCCccccCCce
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFP-------------GIHIG------PEPTTD---RFIAVMYDEREGSVPGNAL 362 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~-------------~~~v~------~~~~~t---r~~~~~~~~~~~~l~dt~g 362 (551)
+.++|+++|.+|+||||++|.|++..-. +..+. ..+|.| ....+.+++..+.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 3568999999999999999999843210 00011 123334 2444667888899999999
Q ss_pred eecCCCCCchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCC
Q psy11743 363 VVDPKKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
..+-. ..+...+..+| ...|...++ ..++.++|+||+|++
T Consensus 92 ~~df~--------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFT--------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp STTCC--------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred chhHH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 75422 12233333444 333333332 467889999999994
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=87.47 Aligned_cols=57 Identities=7% Similarity=0.040 Sum_probs=43.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE---EEe-cCCCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA---VMY-DEREGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~---~~~-~~~~~~l~dt~gi~ 364 (551)
..+|+++|.+||||||++|.|.+.. ...++..+++|.... ..+ ++..+.++||||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~--~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY--SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC--CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 4689999999999999999999885 245666777775322 333 55678899999965
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=88.78 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=24.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
.-|+|+++|.+|+||||++|+|.|..+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 456999999999999999999999865
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-06 Score=91.56 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=40.8
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCC--C--------------------------cccccCCCcccc---eEEEEecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDF--P--------------------------GIHIGPEPTTDR---FIAVMYDE 352 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~--~--------------------------~~~v~~~~~~tr---~~~~~~~~ 352 (551)
...++|+++|.+|+|||||+|.|++..- . ..+....+|.|. ......++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 3457999999999999999999976520 0 011111244553 22244567
Q ss_pred CCccccCCceee
Q psy11743 353 REGSVPGNALVV 364 (551)
Q Consensus 353 ~~~~l~dt~gi~ 364 (551)
..+.++||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 789999999964
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.6e-07 Score=88.12 Aligned_cols=57 Identities=25% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCC--CccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+..+|+++|.+|+||||++|.|.+..+.. ....|+. ...+..++. .+.++||||...
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 56799999999999999999999776421 1122221 122233343 345889999654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-06 Score=77.29 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC--CCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
...+|+++|.+||||||++|.|.+..+. .....|+. ......++ ..+.+.||||...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI----SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC----cccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 4579999999999999999999988742 12222222 22233333 3466799999754
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-06 Score=91.70 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=40.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--C--------------------------CcccccCCCcccc---eEEEEecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--F--------------------------PGIHIGPEPTTDR---FIAVMYDER 353 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~--------------------------~~~~v~~~~~~tr---~~~~~~~~~ 353 (551)
...+|+++|.+|+|||||+|.|++.. + ........+|.|. ...+..++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 35799999999999999999998761 0 1122233345553 333555778
Q ss_pred CccccCCceee
Q psy11743 354 EGSVPGNALVV 364 (551)
Q Consensus 354 ~~~l~dt~gi~ 364 (551)
.+.++||||..
T Consensus 112 ~~~iiDTPG~~ 122 (483)
T 3p26_A 112 NFTIVDAPGHR 122 (483)
T ss_dssp EEEEECCCCCG
T ss_pred eEEEEECCCcH
Confidence 89999999984
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-06 Score=94.38 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=42.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCccccc------------------------------CCCcccc---eEEEEe
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIG------------------------------PEPTTDR---FIAVMY 350 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~------------------------------~~~~~tr---~~~~~~ 350 (551)
...++|+++|.+|+|||||+|+|++... .... ..+|+|. ...+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~--~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN--IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS--CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC--CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 3467999999999999999999997731 1111 0245553 334556
Q ss_pred cCCCccccCCceee
Q psy11743 351 DEREGSVPGNALVV 364 (551)
Q Consensus 351 ~~~~~~l~dt~gi~ 364 (551)
++..+.++||||..
T Consensus 243 ~~~~~~iiDTPG~e 256 (611)
T 3izq_1 243 HRANFTIVDAPGHR 256 (611)
T ss_dssp SSCEEEEEECCSSS
T ss_pred CCceEEEEECCCCc
Confidence 77889999999974
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=98.14 E-value=7.6e-07 Score=83.25 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=19.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC--CCCcccccCCCccc----ceEEEEecC----CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER--DFPGIHIGPEPTTD----RFIAVMYDE----REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~--~~~~~~v~~~~~~t----r~~~~~~~~----~~~~l~dt~gi~ 364 (551)
...+|+++|.+|+||||++|.|.+. .+. .....|+ ....+.+++ ..+.++||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL----KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc----CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 4569999999999999999999988 431 2222222 123344553 367889999964
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-06 Score=88.57 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+...++++|.||+||||++|.|.+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999753
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=86.23 Aligned_cols=57 Identities=25% Similarity=0.212 Sum_probs=39.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCcc--ccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGS--VPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~--l~dt~gi~~ 365 (551)
..++|+++|.+|+||||++|.+.+..+. .....|+. ...+..++..+. +.||||...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC----CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC----cccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 4689999999999999999999988642 22333442 222344555544 899999754
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.4e-07 Score=98.77 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=29.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CC--------------------------cccccCCCcccce---EEEEecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FP--------------------------GIHIGPEPTTDRF---IAVMYDER 353 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~--------------------------~~~v~~~~~~tr~---~~~~~~~~ 353 (551)
..++|+++|.+|+|||||+|.|++.. +. ..+....+|+|.. ..+..++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 34689999999999999999997641 00 0111124566642 22444678
Q ss_pred CccccCCceeec
Q psy11743 354 EGSVPGNALVVD 365 (551)
Q Consensus 354 ~~~l~dt~gi~~ 365 (551)
.+.|+||||..+
T Consensus 256 ~i~iiDTPGh~~ 267 (592)
T 3mca_A 256 IYEIGDAPGHRD 267 (592)
T ss_dssp ---CCEEESSSE
T ss_pred EEEEEECCChHH
Confidence 899999999753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-06 Score=78.16 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+++++|.+||||||++|.|.+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999985
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.05 E-value=7.3e-06 Score=88.90 Aligned_cols=145 Identities=12% Similarity=-0.021 Sum_probs=68.3
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE-------EEe----cCCCccccCCceeecCCCCCch
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-------VMY----DEREGSVPGNALVVDPKKQFRP 372 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~-------~~~----~~~~~~l~dt~gi~~~~~~~~~ 372 (551)
....+|+++|.+||||||++|.|.+..+. ....+..+.+-... +.. .+..+.+.||||...-.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----- 112 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----- 112 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT-----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH-----
Confidence 35679999999999999999999988642 11111111111100 111 14567889999943211
Q ss_pred hhhhhhHHHhhhhhhccccCcccc---------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHH
Q psy11743 373 LDKFGNSFLNRFQCSLVNSPVLKG---------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISA 443 (551)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (551)
.....|+..+...+.=.|+... .......++.|+|+||+|++-.. ... .+.+.+.
T Consensus 113 --~~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~----------~v~----~~~~~~~ 176 (535)
T 3dpu_A 113 --ASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSY----------NIE----QKKINER 176 (535)
T ss_dssp --TTCHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTC----------CCC----HHHHHHH
T ss_pred --HHHHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCccccc----------ccC----HHHHHHH
Confidence 1222233222111111121111 01111357889999999983211 111 1222333
Q ss_pred HH-hccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 444 LR-KDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 444 l~-~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
+. ...|.+.+ ++|.+ ++++..+.+...
T Consensus 177 ~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 177 FPAIENRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp CGGGTTCEEECCC-----CTTHHHHHHHHHT
T ss_pred HHhcCCceEEEecCcccCHHHHHHHHHHHHh
Confidence 32 22345555 88888 999988887653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8.5e-06 Score=85.40 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=54.4
Q ss_pred cCeEEEeCCCCCC--CcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILS--GEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~--~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
..+.||||||... .... +...+... .-.+|.+++|+|+.. + ......+..+.+.-.+..+|+||+|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~-------lm~el~~i~~~~~pd~vlLVlDa~~-g--q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETK-------LLEEMKEMYDVLKPDDVILVIDASI-G--QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTH-------HHHHHHHHHHHHCCSEEEEEEEGGG-G--GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHH-------HHHHHHHHHHhhCCcceEEEEeCcc-c--hHHHHHHHHHhcccCCcEEEEeccc
Confidence 4689999999754 2211 22222221 235799999999984 3 2233445555544456789999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
........ + ...... ..|+.|++. |+++
T Consensus 250 ~~a~~G~a--l-s~~~~~-------g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTAKGGGA--L-SAVVAT-------GATIKFIGT--GEKI 277 (433)
T ss_dssp GCSCHHHH--H-HHHHHH-------TCEEEEEEC--CSSS
T ss_pred ccccchHH--H-HHHHHH-------CCCEEEEEC--CCCh
Confidence 87543211 1 111112 347888886 5555
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.2e-06 Score=93.14 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCC-cccceEE-E-----EecCCCccccCCceeecCCC--CCchhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP-TTDRFIA-V-----MYDEREGSVPGNALVVDPKK--QFRPLDK 375 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~-~~tr~~~-~-----~~~~~~~~l~dt~gi~~~~~--~~~~~~~ 375 (551)
..++|+++|.|||||||++|+|+|... +..++... ++|+.+. + ...+..+.|+||||+.++.. .......
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~-~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK-GFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS-CSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC-ccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 346899999999999999999999863 12333222 3334332 2 12467789999999998654 3344555
Q ss_pred hhh
Q psy11743 376 FGN 378 (551)
Q Consensus 376 ~~~ 378 (551)
|+.
T Consensus 116 fal 118 (592)
T 1f5n_A 116 FAL 118 (592)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.7e-06 Score=79.74 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+.++++|.+|+||||++|.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-06 Score=88.19 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
..++|+++|.+|+|||||+|+|.+..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 46799999999999999999999853
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.4e-05 Score=82.24 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
-.|+|+|++++|||||+|+|+|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 57999999999999999999986
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=1e-05 Score=84.59 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=82.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-CCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-REGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
...++++|.||+|||||+|.|.+.. ..++..+.+|. ...+...+ ..+.+.||||+......... ++..|+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~---~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~---L~~~fl 230 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH---PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG---LGLEFL 230 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC---CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC---SCHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC---ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh---hhHHHH
Confidence 4579999999999999999999885 35666776663 12244444 66889999998653211111 222232
Q ss_pred hh---hhhhccccCcc-------c-cc-ccc-----cccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 382 NR---FQCSLVNSPVL-------K-GK-VLQ-----TPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 382 ~~---~~~~~~~~~~~-------~-~~-~~~-----~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
.. +...+.-.|+. . +. ... -...|.++|+||.|.+.. ...+.+.+.+
T Consensus 231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----------------~~~~~l~~~l 294 (416)
T 1udx_A 231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----------------EAVKALADAL 294 (416)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----------------HHHHHHHHHH
T ss_pred HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----------------HHHHHHHHHH
Confidence 21 11111111211 0 00 000 124567899999998311 1223344444
Q ss_pred H-hccchhhh--ccchH-HHHHHHHHHHHH
Q psy11743 445 R-KDMPSVFG--KEGKK-KELIKKLDEIYK 470 (551)
Q Consensus 445 ~-~~~~~~~~--~~~~~-~~l~~~~~~~~~ 470 (551)
. ...+++.+ +++.+ ++|++.+.+...
T Consensus 295 ~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 295 AREGLAVLPVSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp HTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhcCCeEEEEECCCccCHHHHHHHHHHHHH
Confidence 3 23455555 78888 999999988764
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-05 Score=81.97 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~ 328 (551)
....++++|.||+||||++|.|.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=9.7e-06 Score=84.91 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=27.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t 343 (551)
..+|+++|.+++|||||+|+|.+.......-...++.|
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giT 47 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGIT 47 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcE
Confidence 46899999999999999999997643223333335545
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.7e-06 Score=90.49 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
++++|+++|.+|+|||||+|+|++..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~ 29 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA 29 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc
Confidence 57899999999999999999999874
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.91 E-value=4.5e-06 Score=85.47 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=39.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecC-----------------CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDE-----------------REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~-----------------~~~~l~dt~gi~~ 365 (551)
.+++++|.|||||||++|+|.+.. ..++..|++|.. ..+.+.+ ..+.++||||+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 579999999999999999999987 567777877742 1233433 4688999999874
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.89 E-value=3.2e-05 Score=80.87 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=25.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t 343 (551)
...+|+++|.+++|||||+|+|.+.......-...+|.|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giT 45 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGIS 45 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcE
Confidence 457899999999999999999997643222223334444
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=97.89 E-value=9.3e-06 Score=88.76 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=72.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC--CC----cccc------cCCCcccc---eEEEEec-----CCCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD--FP----GIHI------GPEPTTDR---FIAVMYD-----EREGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~--~~----~~~v------~~~~~~tr---~~~~~~~-----~~~~~l~dt~gi~~ 365 (551)
..+|+++|.+++|||||++.|+... +. +..+ ....|.|- ...+.+. +..+.++||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4589999999999999999999742 10 0111 11233332 2234443 25677999999754
Q ss_pred CCCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhH
Q psy11743 366 PKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSV 436 (551)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~ 436 (551)
-. . .....+..+..++.=.|+..|...|+ ..++.|+|+||+|++-. ..+..
T Consensus 84 F~----~---ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a-------------~~~~v 143 (599)
T 3cb4_D 84 FS----Y---EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA-------------DPERV 143 (599)
T ss_dssp GH----H---HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC-------------CHHHH
T ss_pred HH----H---HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc-------------cHHHH
Confidence 11 0 00111122222222223444544443 46788999999999421 11223
Q ss_pred HHHHHHHHH-hccchhhh--ccchH-HHHHHHHHHH
Q psy11743 437 QAYIISALR-KDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 437 ~~~~~~~l~-~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+.+.+.+. ...+++++ ++|.+ ++|++.+.+.
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~ 179 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRD 179 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhc
Confidence 444555443 11234444 88888 9999888764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-05 Score=70.61 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=38.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..+++++|.+|+||||++|.|.+..+.. ...+..+.+. ...+.+++. .+.+.||||...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 4689999999999999999999987421 1111122221 333455554 345689999654
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=87.11 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=72.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC--CC----cccc------cCCCcccc---eEEEEec---C--CCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD--FP----GIHI------GPEPTTDR---FIAVMYD---E--REGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~--~~----~~~v------~~~~~~tr---~~~~~~~---~--~~~~l~dt~gi~~ 365 (551)
..+|+++|.+++|||||+++|+... +. +..+ ....|.|- .....+. + ..+.++||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4589999999999999999998742 10 0111 11123331 2233332 2 4577999999864
Q ss_pred CCCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhH
Q psy11743 366 PKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSV 436 (551)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~ 436 (551)
-. . -....+..+..++.=.|+..|...|+ ..++.++|+||+|++-. ..+..
T Consensus 86 F~----~---ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a-------------~~~~v 145 (600)
T 2ywe_A 86 FS----Y---EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA-------------DVDRV 145 (600)
T ss_dssp GH----H---HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC-------------CHHHH
T ss_pred HH----H---HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc-------------CHHHH
Confidence 11 0 00011112222222223444544443 46778999999999421 11123
Q ss_pred HHHHHHHHH-hccchhhh--ccchH-HHHHHHHHHH
Q psy11743 437 QAYIISALR-KDMPSVFG--KEGKK-KELIKKLDEI 468 (551)
Q Consensus 437 ~~~~~~~l~-~~~~~~~~--~~~~~-~~l~~~~~~~ 468 (551)
.+++.+.+. ...+++++ ++|.+ +++++.+.+.
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~ 181 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHh
Confidence 334444332 11234444 78888 8998888763
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00013 Score=72.81 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=42.9
Q ss_pred cCeEEEeCCCCCC--CcccccccccchHHHHH--HHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCC
Q psy11743 137 KGISIVDTPGILS--GEKQRVDRGYDFTGVLE--WFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~--~~~~~~~~~~~~~~~~~--~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~ 211 (551)
..+++|||||... .... ....+. ..+..+|.+++|+|+.. + ......++.+.+ ..+ ..+|+||+
T Consensus 181 ~D~ViIDTpg~~~~~~~~~-------l~~el~~i~~~~~~d~vllVvda~~-g--~~~~~~~~~~~~-~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAA-------LLEEMKNIYEAIKPDEVTLVIDASI-G--QKAYDLASKFNQ-ASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHH-------HHHHHHHHHHHHCCSEEEEEEEGGG-G--GGHHHHHHHHHH-TCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHH-------HHHHHHHHHHHhcCCEEEEEeeCCc-h--HHHHHHHHHHHh-hCCCCEEEEeCC
Confidence 3589999999875 2111 121121 23457999999999974 2 233344444443 355 77899999
Q ss_pred CCCCH
Q psy11743 212 DMVDH 216 (551)
Q Consensus 212 Dl~~~ 216 (551)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 98754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.1e-06 Score=84.42 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=29.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccc----cCCCcccc---eEE--EEecCC--CccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHI----GPEPTTDR---FIA--VMYDER--EGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v----~~~~~~tr---~~~--~~~~~~--~~~l~dt~gi~~~ 366 (551)
..+|+++|.+|+||||++|.|.+...+.... +..+..|. ... +...+. .+.++||||..+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 4689999999999999999998875321111 00111221 111 222232 5778999999554
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.5e-05 Score=74.25 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..++++++|.+||||||++|.|++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999876
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=97.84 E-value=2.8e-05 Score=81.24 Aligned_cols=61 Identities=16% Similarity=0.028 Sum_probs=40.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC--------CCCcccc------cCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER--------DFPGIHI------GPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~--------~~~~~~v------~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
...+|+++|.+|+|||||+|+|++. .+....+ ....|.|. .......+..+.++||||..+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 3468999999999999999999984 1111101 11234442 222344567889999999753
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=97.84 E-value=7.7e-06 Score=83.74 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=62.9
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHH---HHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEF---RRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~---~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +...+..+.++++++|+|+|.++.+. .... ..++..+.. .+.|
T Consensus 194 ~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 194 HFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred eEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 578999999764 34444556789999999999985221 1222 334444433 3689
Q ss_pred EEEEEcCCCCCCH--------------------HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 204 IRIVLNKADMVDH--------------------QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 204 vilVlNK~Dl~~~--------------------~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+++|+||+|+... ++..+.....+..+.........+.+.+||+++.++
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV 331 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhH
Confidence 9999999998522 222222222222222110123456788999888777
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=83.22 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=73.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHH---
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL--- 381 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~--- 381 (551)
+|+++|.+|+|||||+|+|+.+ +.|. .....+++..+.++||||..+ |.....
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~-----------giTi~~~~~~~~~~~~~i~iiDtPGh~~----------f~~~~~~~~ 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK-----------GTSSDITMYNNDKEGRNMVFVDAHSYPK----------TLKSLITAL 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE-----------EEESSSEEEEECSSSSEEEEEECTTTTT----------CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhC-----------CEEEEeeEEEEecCCeEEEEEECCChHH----------HHHHHHHHH
Confidence 7999999999999999999822 2221 223445677899999999753 211111
Q ss_pred hhhhhhccccCccccccccc---------cccee-EEEec-ccCCCCccchhhhhhhhhccChhhHHHHHHHHHH----h
Q psy11743 382 NRFQCSLVNSPVLKGKVLQT---------PEVAR-VYIGS-FWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR----K 446 (551)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~---------~~~~~-v~~~~-~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~ 446 (551)
..+..++.=.| ..|...|+ ..++. |+++| |+|+ .... + +...+++.+.+. .
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl--~~~~----~-------~~~~~~i~~~l~~~~~~ 147 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST--HMHA----I-------DELKAKLKVITSGTVLQ 147 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS--CHHH----H-------HHHHHHHHHHTTTSTTT
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC--CHHH----H-------HHHHHHHHHHHHhcCCC
Confidence 11111121123 23333222 34666 78899 9998 1110 0 112233444332 2
Q ss_pred ccchhh--h--cc---chH-HHHHHHHHHHHH
Q psy11743 447 DMPSVF--G--KE---GKK-KELIKKLDEIYK 470 (551)
Q Consensus 447 ~~~~~~--~--~~---~~~-~~l~~~~~~~~~ 470 (551)
..|++. + ++ +.+ ++|++.+.+...
T Consensus 148 ~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 148 DWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred ceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 357766 6 77 888 888888776543
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=97.81 E-value=4.4e-06 Score=88.80 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=22.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.++|+++|.+|+|||||+|+|++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.1e-06 Score=87.24 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
++++|+++|.+++|||||+++|.+.. ...+..++.|. ...+.+++..+.|+||||..+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~---v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK---VASGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH---HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC---CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 67899999999999999999999864 22233344442 222445678899999999643
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.2e-05 Score=84.75 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
..+|+++|.+++|||||+|+|++..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998764
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=97.76 E-value=4.1e-05 Score=85.46 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=57.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CC-------cccccC------CCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FP-------GIHIGP------EPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~-------~~~v~~------~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
...+|+++|.+|+||||++|.|+... +. +..+.. ..+.|. ...+.+.+..+.++||||..+-
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45689999999999999999998531 10 011111 223331 3345667888999999997541
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCC
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
.. .....+..+..++.=.|...|...++ ..++.++|+||+|.+
T Consensus 91 ----~~---~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 91 ----TI---EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp ----HH---HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred ----HH---HHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc
Confidence 10 01111112222222223333333333 467889999999995
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.75 E-value=3.2e-05 Score=80.04 Aligned_cols=61 Identities=18% Similarity=0.030 Sum_probs=48.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-----------------CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-----------------REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-----------------~~~~l~dt~gi~ 364 (551)
...+++++|.||+||||++|.|.+.. .+.++..|+||. ...+.+.+ ..+.++|+||+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~--~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSV--LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST--TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 46799999999999999999999987 248899998884 33344443 357899999998
Q ss_pred cCC
Q psy11743 365 DPK 367 (551)
Q Consensus 365 ~~~ 367 (551)
...
T Consensus 97 ~~~ 99 (392)
T 1ni3_A 97 KGA 99 (392)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=97.75 E-value=5e-05 Score=82.01 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=57.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CC--c---------cccc------CCCccc---ceEEEEecCCCccccCCce
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FP--G---------IHIG------PEPTTD---RFIAVMYDEREGSVPGNAL 362 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~--~---------~~v~------~~~~~t---r~~~~~~~~~~~~l~dt~g 362 (551)
+..+|+++|.+|+||||++|.|++.. +. + ..+. ...|.| ....+.+.+..+.++||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 35689999999999999999999752 10 0 0111 122333 1334566788899999999
Q ss_pred eecCCCCCchhhhhhhHHHhhhhhhccccC-------cccccccc---------cccceeEEEecccCCC
Q psy11743 363 VVDPKKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQ---------TPEVARVYIGSFWDQP 416 (551)
Q Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~v~~~~~wd~~ 416 (551)
..+-. ......+..+| +..|...+ ...++.++|+||+|++
T Consensus 92 ~~df~--------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFS--------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp STTCC--------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC
T ss_pred ChhHH--------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc
Confidence 85421 11222233333 22332222 2457789999999994
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=8.8e-05 Score=74.83 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=72.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+.++|+|..|+|||||+|.|++... + .+..++.....+..+.|.++......-....++|.||+...++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~-~---------~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~ 73 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQH-G---------YKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNEL 73 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCC-C---------CCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcC-C---------CcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHH
Confidence 47899999999999999999998641 0 1122222222122222222111100011223567777765432
Q ss_pred ----------------ccCeEEEeCCCCCCCcccccccccch-HHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh
Q psy11743 136 ----------------LKGISIVDTPGILSGEKQRVDRGYDF-TGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR 198 (551)
Q Consensus 136 ----------------l~~~~lIDTPGi~~~~~~~~~~~~~~-~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~ 198 (551)
....+++++-|+..+.. +... + ...........+.++-++|+.+ .......+-...+
T Consensus 74 ~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~--~~~~--~~~~~~~~~~~~l~~~l~~vd~~~--~~~~~~~ls~g~~ 147 (318)
T 1nij_A 74 EDALLDLLDNLDKGNIQFDRLVIECTGMADPGP--IIQT--FFSHEVLCQRYLLDGVIALVDAVH--ADEQMNQFTIAQS 147 (318)
T ss_dssp HHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH--HHHH--HHHSHHHHHHEEEEEEEEEEETTT--HHHHHHHCHHHHH
T ss_pred HHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH--HHHH--HhcCccccCeEEECCEEEEEEHHH--HHHHHhhchHHHH
Confidence 12568888888765221 1000 1 0001112245677888999874 1111111000001
Q ss_pred CCCCcEEEEEcCCCCCCH
Q psy11743 199 GHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 199 ~~~~~vilVlNK~Dl~~~ 216 (551)
+....-++++||.|+.++
T Consensus 148 Q~~~ad~ill~k~dl~de 165 (318)
T 1nij_A 148 QVGYADRILLTKTDVAGE 165 (318)
T ss_dssp HHHTCSEEEEECTTTCSC
T ss_pred HHHhCCEEEEECcccCCH
Confidence 111334667799999975
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.3e-05 Score=68.83 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=38.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCCc--cccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDEREG--SVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~~--~l~dt~gi~~ 365 (551)
..+++++|.+|+||||++|.|.+..+. ....|..+ ....+.+++..+ .+.||||...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~---~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC---CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 468999999999999999999998742 22223222 133345555544 4589999754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.9e-05 Score=73.53 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCCcEEEEEeec---------CCChhHHHHHHHhC
Q psy11743 304 DAKPTVMLVGQY---------STGKTTFIRYLLER 329 (551)
Q Consensus 304 ~~~~~~~~~g~~---------~~gKss~~n~l~~~ 329 (551)
....+|+++|.+ ||||||++|.|.+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 455799999999 99999999999984
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.2e-05 Score=85.38 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=58.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC--CCC-------cccccC------CCcccc---eEEEEecCCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER--DFP-------GIHIGP------EPTTDR---FIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~--~~~-------~~~v~~------~~~~tr---~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
...+|+++|.+|+||||++|.|++. .+. +..+.. .+++|. ...+.+++..+.++||||..+-
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4568999999999999999999963 110 011122 244442 3346677888999999998652
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCC
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
. . .....+..+...+.=.|...|...++ ..++.++|+||+|++
T Consensus 89 ~----~---~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 89 T----V---EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp C----H---HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST
T ss_pred H----H---HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 1 0 00111111111222123333333332 467789999999983
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.7e-05 Score=81.38 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=41.6
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC--------C--ChHHHHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD--------I--SDEFRRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~--------~--~~~~~~~l~~l~~----~~~~ 203 (551)
.+.+|||||... +...+..+.++++++|+|+|.++.+ . ..+...++..+.. .+.|
T Consensus 202 ~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 202 PFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 578999999865 2333445568999999999998521 1 1122334444432 3689
Q ss_pred EEEEEcCCCCC
Q psy11743 204 IRIVLNKADMV 214 (551)
Q Consensus 204 vilVlNK~Dl~ 214 (551)
+++|+||+|+.
T Consensus 271 iILv~NK~DL~ 281 (362)
T 1zcb_A 271 IILFLNKTDLL 281 (362)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEEChhhh
Confidence 99999999985
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.1e-05 Score=81.93 Aligned_cols=97 Identities=15% Similarity=0.038 Sum_probs=57.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC-------CCcc------cccCCCcccc---eEEEEecCCCccccCCceeecCCCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD-------FPGI------HIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~-------~~~~------~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
..+|+++|.+++|||||+|+|.+.. +... ......+.|. .......+..+.++||||..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH----
Confidence 4689999999999999999999741 1000 0111233442 112334567889999999753
Q ss_pred CchhhhhhhHHHhhhhhhccccCc-------cccccccc---------cccee-EEEecccCCC
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVAR-VYIGSFWDQP 416 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~-v~~~~~wd~~ 416 (551)
| .......+..+|. ..|...|+ ..++. |+|+||+|++
T Consensus 79 ------f----~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 79 ------Y----VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp ------H----HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred ------H----HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 2 2222333344443 23333332 35664 6889999983
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=97.64 E-value=3.5e-05 Score=88.86 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=56.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC-------C------CcccccCCCcccc---eEEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD-------F------PGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~-------~------~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
...+|+++|.+++|||||+|.|.+.. + ...+.....|.|. .......+..+.++||||..+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed--- 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD--- 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH---
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH---
Confidence 34689999999999999999998741 0 0011112334442 223344567889999999753
Q ss_pred CCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccce-eEEEecccCCC
Q psy11743 369 QFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVA-RVYIGSFWDQP 416 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~-~v~~~~~wd~~ 416 (551)
| .......+..+|. ..|...|+ ..++ .|+|+||+|++
T Consensus 372 -------F----~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 372 -------Y----VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp -------H----HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred -------H----HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 2 2223333444442 33433333 3466 47789999994
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=71.58 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=40.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHH--HHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEW--FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~--~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.++||+|....... ....+.. .+-.+|-.++++|+.. + ....+.+..+.+.-....+++||.|..
T Consensus 212 ~d~vliDtaG~~~~~~~-------l~~eL~~i~ral~~de~llvLDa~t-~--~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRN-------LMDEMKKIARVTKPNLVIFVGDALA-G--NAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp CSEEEEEECCSCCTTTC-------HHHHHHHHHHHHCCSEEEEEEEGGG-T--THHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred chhhHHhhccchhHHHH-------HHHHHHHHHHHhcCCCCEEEEecHH-H--HHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 34788999998653221 2222221 1235899999999874 2 233344444443223457889999975
Q ss_pred C
Q psy11743 215 D 215 (551)
Q Consensus 215 ~ 215 (551)
.
T Consensus 282 a 282 (328)
T 3e70_C 282 A 282 (328)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=97.56 E-value=4.1e-05 Score=78.73 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=42.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eE-EEEe---------------------cCCCccccCCce
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FI-AVMY---------------------DEREGSVPGNAL 362 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~-~~~~---------------------~~~~~~l~dt~g 362 (551)
++++++|.||+||||++|.|.+.. ..++..|.+|. .. ...+ .+..+.++||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~---~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN---ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH---TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 468999999999999999999875 46677777663 21 1222 234588999999
Q ss_pred eecCC
Q psy11743 363 VVDPK 367 (551)
Q Consensus 363 i~~~~ 367 (551)
+....
T Consensus 79 l~~~a 83 (368)
T 2dby_A 79 LVKGA 83 (368)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 98643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.4e-05 Score=79.76 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=33.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-----------------CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-----------------REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-----------------~~~~l~dt~gi~ 364 (551)
.+.+++++|.|||||||++|.|.+.. ..++..|++|. ...+.+.+ ..+.++||||+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~---~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ---ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC---ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 46789999999999999999999987 47788888884 22233322 347899999998
Q ss_pred cCC
Q psy11743 365 DPK 367 (551)
Q Consensus 365 ~~~ 367 (551)
...
T Consensus 98 ~~a 100 (396)
T 2ohf_A 98 KGA 100 (396)
T ss_dssp ---
T ss_pred ccc
Confidence 643
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=6.1e-05 Score=79.43 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=38.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC--CCCccc--------------------------ccCCCcccce---EEEEecCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER--DFPGIH--------------------------IGPEPTTDRF---IAVMYDER 353 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~--~~~~~~--------------------------v~~~~~~tr~---~~~~~~~~ 353 (551)
...+|+++|.+++|||||+|+|++. .+.... .....++|.. ......+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 3468999999999999999999875 221110 0113455532 22445677
Q ss_pred CccccCCceeec
Q psy11743 354 EGSVPGNALVVD 365 (551)
Q Consensus 354 ~~~l~dt~gi~~ 365 (551)
.+.++||||..+
T Consensus 85 ~~~iiDtpG~~~ 96 (435)
T 1jny_A 85 FFTIIDAPGHRD 96 (435)
T ss_dssp EEEECCCSSSTT
T ss_pred EEEEEECCCcHH
Confidence 899999999653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=4.5e-05 Score=86.96 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+|+++|.+|+||||++|.|++.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999976
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=1.6e-05 Score=83.05 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=37.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccC-CCcccc-eEEEEecC----CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-EPTTDR-FIAVMYDE----REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~-~~~~tr-~~~~~~~~----~~~~l~dt~gi~~ 365 (551)
++++++|++|+|||||+|.|.|..+.+.++.. .++.++ .+...... ..+.+.||+|+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 45999999999999999999999765544443 345543 22222222 2467889999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00024 Score=75.24 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.|+|+|.+|+|||||++.|.|.-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 44589999999999999999999853
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00025 Score=79.14 Aligned_cols=105 Identities=13% Similarity=0.021 Sum_probs=60.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC--CC-------cccccC------CCcccc---eEEEEecC-------CCccccC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD--FP-------GIHIGP------EPTTDR---FIAVMYDE-------REGSVPG 359 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~--~~-------~~~v~~------~~~~tr---~~~~~~~~-------~~~~l~d 359 (551)
+..+|+++|.+++||||+++.|+... +. +..+.. ..+.|. ...+.+.+ ..+.|+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45789999999999999999998642 10 011111 123332 22344555 7789999
Q ss_pred CceeecCCCCCchhhhhhhHHHhhhhhhccccCccccccccc---------ccceeEEEecccCCC
Q psy11743 360 NALVVDPKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 360 t~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
|||..+-. . .....+..+..++.-.|...|...++ ..++.++|+||+|.+
T Consensus 89 TPG~~df~----~---~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 89 TPGHVDFT----I---EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred CCCccchH----H---HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 99976411 0 00111122223333334444443332 357789999999984
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.38 E-value=5.7e-05 Score=77.25 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=45.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC-------CCChHH---HHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL-------DISDEF---RRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~-------~~~~~~---~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +......+.++++++|+|+|.+.. .-.... ..+++.+.. .+.|
T Consensus 184 ~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 184 VYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred eeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 588999999865 344455567899999999998610 111222 234444432 3689
Q ss_pred EEEEEcCCCCC
Q psy11743 204 IRIVLNKADMV 214 (551)
Q Consensus 204 vilVlNK~Dl~ 214 (551)
+++|+||+|+.
T Consensus 253 iiLvgNK~DL~ 263 (354)
T 2xtz_A 253 FMLFLNKFDIF 263 (354)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcchh
Confidence 99999999984
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=9.4e-05 Score=77.30 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
..+|+++|.+|+||||++|.|.|..+
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45789999999999999999999864
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=9.7e-05 Score=77.63 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=39.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhC---------------CCCcccccCCCcccc--eEEEEec-----------CCCcccc
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER---------------DFPGIHIGPEPTTDR--FIAVMYD-----------EREGSVP 358 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~---------------~~~~~~v~~~~~~tr--~~~~~~~-----------~~~~~l~ 358 (551)
-.|+++|.+++|||||+|+|+|. ...+..++ +++.+ ...+++. +.++.++
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~--~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR--GGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC--CSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC--CCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 36889999999999999999975 22223333 22221 2334442 2458889
Q ss_pred CCceeecCC
Q psy11743 359 GNALVVDPK 367 (551)
Q Consensus 359 dt~gi~~~~ 367 (551)
||||+.++.
T Consensus 146 DTeG~~~~~ 154 (447)
T 3q5d_A 146 DTQGTFDSQ 154 (447)
T ss_dssp EEECCCSSH
T ss_pred cCCcccccc
Confidence 999999875
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00035 Score=77.56 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=58.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCC----c-----ccccCC------Cccc---ceEEEEecCCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFP----G-----IHIGPE------PTTD---RFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~----~-----~~v~~~------~~~t---r~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
+..+++++|.+++||||+++.|++.... + ..+... .+.| ....+.+.+..+.++||||..+-
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3468999999999999999999965311 1 111111 1223 12334556778889999997531
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCcccccccc---------cccceeEEEecccCCC
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQ---------TPEVARVYIGSFWDQP 416 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~wd~~ 416 (551)
. ......+..+..++.=.|...|...+ ...++.++|+||.|.+
T Consensus 88 ~-------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 V-------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp H-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred H-------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 0 00111111112222222333333222 2357789999999985
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00054 Score=68.53 Aligned_cols=25 Identities=36% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.-.|+|+|++|+||||+++.|.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3589999999999999999999854
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=3.2e-05 Score=75.24 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.4
Q ss_pred CCCcEEEEEeecCCChhHHHHHHH
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLL 327 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~ 327 (551)
.+.+.+++.|.+||||||+++.|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 456788899999999999999998
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=75.64 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=39.8
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHH--HHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLE--WFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~--~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl 213 (551)
..++||||||....... ....+. ..+..+|.+++|+|+.. +. +. ...+..+.. ..+ .-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~~~-------l~~~L~~~~~~~~p~~vllVvda~~-g~-~~-~~~~~~f~~-~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEA-------MMDEIKQVHASINPVETLFVVDAMT-GQ-DA-ANTAKAFNE-ALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTCHH-------HHHHHHHHHHHSCCSEEEEEEETTB-CT-TH-HHHHHHHHH-HSCCCCEEEECTTS
T ss_pred CCEEEEECCCcccccHH-------HHHHHHHHHHhhcCcceeEEeecch-hH-HH-HHHHHHHhc-cCCCeEEEEecCCC
Confidence 35999999997652111 121111 22447899999999984 42 22 233333332 233 3479999998
Q ss_pred CC
Q psy11743 214 VD 215 (551)
Q Consensus 214 ~~ 215 (551)
..
T Consensus 253 ~~ 254 (433)
T 2xxa_A 253 DA 254 (433)
T ss_dssp SS
T ss_pred Cc
Confidence 64
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00013 Score=77.68 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..++|+++|.+++|||||+|.|+..
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~ 66 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFL 66 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHH
Confidence 3468999999999999999999853
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00012 Score=74.18 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=46.9
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHH---HHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEF---RRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~---~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +...+..+.++++++|+|+|.+..+ ..... ..++..+.. .+.|
T Consensus 162 ~l~iwDtaGQe~-----------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p 230 (340)
T 4fid_A 162 PFHLIDVGGQRS-----------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV 230 (340)
T ss_dssp EEEEEECCSCHH-----------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE
T ss_pred eeccccCCCccc-----------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe
Confidence 578999999854 5666777889999999999997211 12222 233333322 4689
Q ss_pred EEEEEcCCCCCC
Q psy11743 204 IRIVLNKADMVD 215 (551)
Q Consensus 204 vilVlNK~Dl~~ 215 (551)
+++++||+|+..
T Consensus 231 iiLv~NK~DL~~ 242 (340)
T 4fid_A 231 KLIFLNKMDLFE 242 (340)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999999864
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00074 Score=68.02 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.|+++|.+|+||||++..|.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00079 Score=72.92 Aligned_cols=113 Identities=19% Similarity=0.085 Sum_probs=73.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCC-------------CcccccC------CCccc---ceEEEEecCCCccccCCcee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDF-------------PGIHIGP------EPTTD---RFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~-------------~~~~v~~------~~~~t---r~~~~~~~~~~~~l~dt~gi 363 (551)
.-+|+|+|....|||||.-.|+-..- .+..+.+ .-|.| ....+.|.+..++|+||||-
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 34799999999999999999874320 0001111 11222 24457789999999999998
Q ss_pred ecCCCCCchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCCCccchhhhhhh
Q psy11743 364 VDPKKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFE 427 (551)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~ 427 (551)
.+-. ....+++.-+| +..|..-|+ ..+++++++||+|.+
T Consensus 111 vDF~--------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~----------- 165 (548)
T 3vqt_A 111 QDFS--------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE----------- 165 (548)
T ss_dssp GGCS--------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC-----------
T ss_pred HHHH--------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch-----------
Confidence 8632 44555555554 556777776 468889999999983
Q ss_pred hhccChhhHHHHHHHHHH
Q psy11743 428 DRSSTSNSVQAYIISALR 445 (551)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~ 445 (551)
..++....+++.+.|.
T Consensus 166 --~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 166 --ALHPLDVMADIEQHLQ 181 (548)
T ss_dssp --CCCHHHHHHHHHHHHT
T ss_pred --hcchhHhhhhhhhhcC
Confidence 2233446677777774
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00017 Score=72.18 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
..-.++|+|++|||||||+|.|+|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 346899999999999999999998653
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=72.22 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=45.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC-------CCCCChHH---HHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH-------KLDISDEF---RRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~-------~~~~~~~~---~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +...+..+.++++++|+|+|.+ +..-.... ..+++.+.. .+.|
T Consensus 168 ~l~iwDtgGQe~-----------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 168 IFRMVDVGGQRS-----------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEEECCSHH-----------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred eeEEEEcCCchh-----------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 578999999854 4445556778999999999765 11112222 233443332 3689
Q ss_pred EEEEEcCCCCCC
Q psy11743 204 IRIVLNKADMVD 215 (551)
Q Consensus 204 vilVlNK~Dl~~ 215 (551)
+++++||+|+..
T Consensus 237 iiL~~NK~DL~~ 248 (327)
T 3ohm_A 237 VILFLNKKDLLE 248 (327)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999999854
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=65.45 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.-.|+++|.+|+||||++..|.+.-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998753
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0019 Score=60.38 Aligned_cols=103 Identities=10% Similarity=-0.044 Sum_probs=51.4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHH---HHHHhC----CCCcEEEEEcC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRS---IEALRG----HDDKIRIVLNK 210 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~---l~~l~~----~~~~vilVlNK 210 (551)
++..-.+||-.+ +.....+...++.+.+++|++|||+|+.+....+.-.++ ...+.+ .+.|++|..||
T Consensus 97 k~~~~~~~~~~~-----~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANK 171 (227)
T 3l82_B 97 KMFSRHNEGDDQ-----QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCI 171 (227)
T ss_dssp -------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEE
T ss_pred hcccccCCCccc-----cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCC
Confidence 355666776322 122233566677899999999999999863332322233 222222 36789999999
Q ss_pred C-CCCC---HHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 A-DMVD---HQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~-Dl~~---~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
. |+.. ..++.+. + .|..+ .. .-.+..+||.+|.|+
T Consensus 172 qqDlp~Ams~~EI~e~----L-~L~~l-~R-~W~Iq~csA~TGeGL 210 (227)
T 3l82_B 172 SQGDVKRMPCFYLAHE----L-HLNLL-NH-PWLVQDTEAETLTGF 210 (227)
T ss_dssp SSTTSCBCCHHHHHHH----T-TGGGG-CS-CEEEEEEETTTCTTH
T ss_pred CcCccCCCCHHHHHHH----c-CCcCC-CC-CEEEEEeECCCCcCH
Confidence 5 5643 2333221 1 12222 23 336888999999987
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0013 Score=65.68 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.|+++|++|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 347899999999999999999875
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0006 Score=69.57 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
.-.++|+|++|+|||||+|.|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 45899999999999999999999753
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=65.11 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.+++++|++|+||||++|.|.|..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999873
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.004 Score=64.98 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=39.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHH--HHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEW--FAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~--~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..++||||||....... ....+.. .+-.+|.+++|+|+.. + .+ ....+..+...-...-+|+||+|..
T Consensus 181 ~DvVIIDTaG~l~~d~~-------l~~el~~i~~~~~pd~vlLVvDa~t-g-q~-av~~a~~f~~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEP-------LMGELARLKEVLGPDEVLLVLDAMT-G-QE-ALSVARAFDEKVGVTGLVLTKLDGD 250 (425)
T ss_dssp CSEEEEECCCCSSCCHH-------HHHHHHHHHHHHCCSEEEEEEEGGG-T-TH-HHHHHHHHHHHTCCCEEEEESGGGC
T ss_pred CCEEEEcCCCcccccHH-------HHHHHHHhhhccCCceEEEEEeccc-h-HH-HHHHHHHHHhcCCceEEEEeCcCCc
Confidence 35899999997652110 1222211 1236899999999974 3 22 2233333332112356789999975
Q ss_pred C
Q psy11743 215 D 215 (551)
Q Consensus 215 ~ 215 (551)
.
T Consensus 251 ~ 251 (425)
T 2ffh_A 251 A 251 (425)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.01 Score=62.07 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.9
Q ss_pred CEEEEEeccCCChHHHHHHHH
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLL 77 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Ll 77 (551)
..|+|+|.+++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 478899999999999999776
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0015 Score=65.14 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+|+++|.+|+||||++|.|.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999987
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00051 Score=71.22 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=46.1
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCC----------CCChHHHHHHHHHhC----CCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKL----------DISDEFRRSIEALRG----HDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~~ 203 (551)
.+.+|||+|... +...+..+.+.++++|+|+|.++. ........++..+.. .+.|
T Consensus 218 ~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 218 NFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 286 (402)
T ss_dssp EEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred cceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence 578999999864 344555667899999999999851 111122344444433 3578
Q ss_pred EEEEEcCCCCCC
Q psy11743 204 IRIVLNKADMVD 215 (551)
Q Consensus 204 vilVlNK~Dl~~ 215 (551)
+++|+||+|+..
T Consensus 287 iiLvgNK~DL~~ 298 (402)
T 1azs_C 287 VILFLNKQDLLA 298 (402)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEEChhhhh
Confidence 999999999853
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.003 Score=63.05 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.++++|++|+|||||+|.|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 44689999999999999999999 54
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.011 Score=54.49 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=46.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCC-----CCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGH-----DDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~~vilVlNK~ 211 (551)
..+++||||+... ......+..+|.+++++.+.. .. .....+++.+.+. +.++.+|+|++
T Consensus 76 yD~viiD~~~~~~-------------~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 76 YDFAIVDGAGSLS-------------VITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SSEEEEECCSSSS-------------HHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCEEEEECCCCCC-------------HHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 4589999998653 123455678999999999985 33 5556777777654 35679999999
Q ss_pred CCC
Q psy11743 212 DMV 214 (551)
Q Consensus 212 Dl~ 214 (551)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 964
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=72.17 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=63.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCC--C-------CcccccCCC------ccc---ceEEEEecCCCccccCCceeecCCCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERD--F-------PGIHIGPEP------TTD---RFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~--~-------~~~~v~~~~------~~t---r~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
.|+|+|....|||||.-.|+... + .+..+.+.- |.| ......|++..++|+||||-.+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D---- 79 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD---- 79 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS----
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH----
Confidence 58999999999999999997441 0 011111111 122 1233567899999999999875
Q ss_pred CchhhhhhhHHHhhhhhhccccC-------cccccccccc---------cceeEEEecccCCC
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQTP---------EVARVYIGSFWDQP 416 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------~~~~v~~~~~wd~~ 416 (551)
|.....+++.-+| +..|..-|+. .++.|+++||+|.+
T Consensus 80 ----------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 80 ----------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp ----------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred ----------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 3345555555554 5667777763 57779999999984
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0029 Score=63.10 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
..-.++++|++|+|||||+|.|.|...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 446899999999999999999999764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0049 Score=61.25 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.++++|.+|+||||++..|.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999875
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0033 Score=58.81 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=23.4
Q ss_pred ccCCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 52 DFDAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 52 ~~~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.....-.++|+|++|+|||||++.|.|..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34455689999999999999999999964
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0094 Score=59.86 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=34.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCccc--ccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIH--IGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~--v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+++++|..||||||+++.+.+.-.+... +++..+.. ...+ ...-.+.+.||||-.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~-~~~v-~~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-LEHF-STLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCC-CEEE-CSSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeee-eEEE-ccEEEEEEEECCCchh
Confidence 4789999999999999988765432211 12222222 1112 1234567889999764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0092 Score=62.04 Aligned_cols=62 Identities=13% Similarity=-0.033 Sum_probs=37.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC--CcccccCCCcccc-eEEEEec-CCCccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF--PGIHIGPEPTTDR-FIAVMYD-EREGSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~--~~~~v~~~~~~tr-~~~~~~~-~~~~~l~dt~gi~~~ 366 (551)
....++++|++|+||||++|.|.|..- .|........+|+ ....... ..++.+.|+||+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch
Confidence 456899999999999999999999521 1222222222333 2222222 235778899998653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0041 Score=56.89 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.++|+|++|+|||||++.|+|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0038 Score=58.07 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..++|+|++|+|||||++.|+|..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999853
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0049 Score=56.22 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..++|+|++|+|||||++.|++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999864
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0061 Score=56.71 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=23.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
+....|+|+|++|+|||||+++|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345679999999999999999999864
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.075 Score=49.56 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=44.6
Q ss_pred cCeEEEeCCCC-CCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC-CCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGI-LSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG-HDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi-~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-~~~~vilVlNK~Dl~ 214 (551)
..+++||||+. ... .+..++..+|.+++++.+.. ........+++.+.. .+.++.+|+|++|..
T Consensus 68 yD~viiD~p~~~~~~-------------~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE-------------DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp CSEEEEEEECCCSSS-------------HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred CCEEEEeCCCCcCcH-------------HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 35899999986 431 23456688999999999873 222223455566655 256788999999976
Q ss_pred C
Q psy11743 215 D 215 (551)
Q Consensus 215 ~ 215 (551)
.
T Consensus 134 ~ 134 (209)
T 3cwq_A 134 P 134 (209)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0074 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.++|+|++|+|||||++.|.|.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999986
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0072 Score=57.07 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.++|+|++|+|||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999999954
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0088 Score=56.63 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.++|+|++|+|||||++.|+|..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34579999999999999999999975
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.02 Score=63.88 Aligned_cols=96 Identities=18% Similarity=0.087 Sum_probs=59.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC-----C----CcccccCC------Cccc-c--eEEEEec-------CCCccccCCc
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD-----F----PGIHIGPE------PTTD-R--FIAVMYD-------EREGSVPGNA 361 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~-----~----~~~~v~~~------~~~t-r--~~~~~~~-------~~~~~l~dt~ 361 (551)
-.|+|+|....|||||.-.|+-.. . .+..+.+. -|.| + .+...|. +..++|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 379999999999999999887441 0 01111111 1122 1 2223342 4568899999
Q ss_pred eeecCCCCCchhhhhhhHHHhhhhhhcccc-------Cccccccccc---------ccceeEEEecccCCC
Q psy11743 362 LVVDPKKQFRPLDKFGNSFLNRFQCSLVNS-------PVLKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 362 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
|-.+ |.....+++.-+ |+..|..-|+ ..++.|+++||.|.+
T Consensus 94 GHvD--------------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVD--------------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTT--------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred CCcc--------------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence 9876 234444444444 5677888777 367889999999984
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0096 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.|+|+|++|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999999986
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0087 Score=55.90 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+|+|++|+|||||++.|.+.-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999864
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0082 Score=57.04 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999865
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.011 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.-.++++|+.|+|||||++.|.|..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999999975
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0091 Score=57.15 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455689999999999999999999865
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=56.99 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.. -.++|+|++|+|||||++.|.|-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 689999999999999999999965
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.013 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.+.++|+|.+|+|||||+++|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999986
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.013 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+|+|++|+||||+++.|.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999998864
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=54.66 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...|+|+|++|+||||+++.|++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999874
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...|+|+|++|+|||||++.|.|.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999985
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=58.12 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345689999999999999999999865
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=57.47 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999865
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=56.87 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445689999999999999999999864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0098 Score=56.11 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999865
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=56.29 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999999975
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=57.00 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999999875
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.01 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
-.++|+|++|+|||||++.|.|-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999997
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=57.17 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.8
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....-.++|+|++|+|||||++.|+|.-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3445689999999999999999999853
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.013 Score=56.74 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...-.++|+|++|+|||||++.|.|-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999996
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355689999999999999999999965
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0069 Score=56.33 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEE-EEecCCCccccCCcee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPGNALV 363 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~-~~~~~~~~~l~dt~gi 363 (551)
++..++++|++|+||||++|.|++.. +.......+.|||... -..++..+.++|...+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~-~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN-PEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC-TTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC-CccEEeeecccccCCcCCeeccccceeccHHHh
Confidence 45578999999999999999999874 1233445556666321 2244555666655543
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.087 Score=57.37 Aligned_cols=42 Identities=21% Similarity=0.153 Sum_probs=27.1
Q ss_pred cCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCC
Q psy11743 172 VDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMV 214 (551)
Q Consensus 172 aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~ 214 (551)
.+.+++|..+.. ....+....++.+...+.+ .-+|+|++...
T Consensus 198 ~t~vvlV~~~~~-~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 198 RTRLVLVARLQK-STLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp TEEEEEEEESCH-HHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred CcEEEEEeCCCc-cHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 347888988763 3334445666667665554 45789999754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.013 Score=56.24 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999999864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.011 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHh
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
..-.++++|++|+|||||++.+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 345799999999999999997653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.016 Score=57.61 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|--
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999999864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999865
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=57.16 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=23.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...-.++|+|++|+|||||++.|+|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999996
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=56.77 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345589999999999999999999875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=56.96 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999999865
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.013 Score=56.99 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455689999999999999999999863
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.015 Score=56.73 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 455689999999999999999999865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.01 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..|+|+|++|+|||||++.|++.-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999975
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.0037 Score=59.72 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=40.4
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~D 212 (551)
..++|||||+.... ....++..+|.+++|+++.... ......+.+.+.+.+ ..+.+|+|+++
T Consensus 132 yD~viiD~pp~~~~-------------~~~~~l~~aD~viiv~~~~~~s-~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH-------------LTRGTAKAVDMMIAVIEPNLNS-IKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CSEEEEEECTTCTT-------------CCHHHHTTCSEEEEEECSSHHH-HHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCEEEEeCCCcccH-------------HHHHHHHHCCEEEEecCCCHHH-HHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 46899999876541 1234568899999999987411 122234444444444 45789999998
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=57.35 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355689999999999999999999865
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.016 Score=56.28 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=56.78 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999999865
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=53.54 Aligned_cols=23 Identities=39% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.++|+|++|+|||||++.|.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999999853
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.018 Score=52.54 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEEEeccCCChHHHHHHHHh
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg 78 (551)
.++|+|++|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.019 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+|+|++||||||+.+.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 551 | ||||
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 6e-19 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 2e-05 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 2e-18 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 5e-06 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 5e-04 |
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 85.6 bits (211), Expect = 6e-19
Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 44/271 (16%)
Query: 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY-----------DEREG 105
P +++VG S+GK++ + ++ RDF G T R + + + G
Sbjct: 25 PQIVVVGSQSSGKSSVLENIVGRDFL--PRGSGIVTRRPLILQLTHLPIADDGSQTQEWG 82
Query: 106 SVPFSPLDKFGKF-----------------GNSFLNRFQCSLVNSPVLKGISIVDTPGIL 148
P D F F + + SP + +++VD PGI
Sbjct: 83 EFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGIT 142
Query: 149 SGEKQR--VDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHDDKIR 205
D ++ + ++ + II+ D+ + + + + + +
Sbjct: 143 KVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI 202
Query: 206 IVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDEE 265
V+ K D++D A+ G+V+ I + + R + E
Sbjct: 203 GVITKLDLMDKGT-----DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257
Query: 266 Q-----DLFKDLQSLPRNAALRK-LNDLIKR 290
++K + + A L K LN L+
Sbjct: 258 LYFKNHPIYKSIANRSGTAYLSKTLNKLLMF 288
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 44.4 bits (104), Expect = 2e-05
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 283 KLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT 342
+L +I + + D P +++VG S+GK++ + ++ RDF G T
Sbjct: 2 QLIPVINKLQDVFNTLGSDPLDL-PQIVVVGSQSSGKSSVLENIVGRDFL--PRGSGIVT 58
Query: 343 DRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKF 376
R + + + G+ + +P D F
Sbjct: 59 RRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMF 92
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 83.8 bits (206), Expect = 2e-18
Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 29/285 (10%)
Query: 30 KLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE 89
L+PL D S ++AD D P + +VG S GK++ + + RDF G
Sbjct: 3 DLIPLVN--RLQDAFSAIGQNADLD-LPQIAVVGGQSAGKSSVLENFVGRDFL--PRGSG 57
Query: 90 PTTDRFIAVMY--------------------DEREGSVPFSPLDKFGKFGNSFLNRFQCS 129
T R + + E + D+
Sbjct: 58 IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINL 117
Query: 130 LVNSPVLKGISIVDTPGILS---GEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI 186
V SP + +++VD PG+ G++ ++++ + I+ + A+
Sbjct: 118 RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA 177
Query: 187 SDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGS 246
+ + + + + + V+ K D++D R + V R
Sbjct: 178 NSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 237
Query: 247 FWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRK-LNDLIKR 290
+ + + ++ L L+K LN +
Sbjct: 238 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 282
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.0 bits (108), Expect = 5e-06
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 3/109 (2%)
Query: 281 LRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP-- 338
+ L L+ R + A + P + +VG S GK++ + + RDF G
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Query: 339 -EPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQC 386
P + + + E D ++ ++ + +
Sbjct: 61 RRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 109
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 26/229 (11%), Positives = 74/229 (32%), Gaps = 38/229 (16%)
Query: 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365
+P++++ G ++GKT+ + L PT + + +GS +VD
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSV-------RPTVVSQEPLSAADYDGS---GVTLVD 52
Query: 366 PKKQFRPLDKFGNSFLNRFQCSLVNSPVLKGKVLQTPEVARVYIGSFWDQPLVHDVNRRL 425
+ K + R + ++ V + L
Sbjct: 53 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---------------LTTTAEFL 97
Query: 426 FEDRSSTSNSVQAYI---ISALRKDMPSVFGKEGKKKELIKKLDEIYKQIQREYQISPVF 482
+ S T +S + I I+ + ++ + K L ++ ++ ++ ++
Sbjct: 98 VDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERK 157
Query: 483 GKKKELIKKLDEI--------YKQIQREYQISPGDFP--KVEKMQELLQ 521
+++ + ++ + ++ G K+ + +E +
Sbjct: 158 INEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWID 206
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 551 | |||
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.84 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.81 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.81 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.8 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.78 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.77 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.76 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.76 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.75 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.74 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.71 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.69 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.68 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.68 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 99.65 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.64 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.62 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.61 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.61 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.61 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.6 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.6 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.6 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.58 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.58 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.57 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.57 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.57 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 99.57 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.56 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.55 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.55 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.54 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.54 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.53 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.52 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.52 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.51 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.5 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.49 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.49 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.48 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.47 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.47 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.45 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.45 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.44 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.43 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.4 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.4 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.39 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.38 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.37 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.37 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.37 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.36 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.35 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.32 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.32 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.3 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.29 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.25 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.22 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.21 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.19 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.19 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.16 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.13 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.09 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.07 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.06 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.03 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.02 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.0 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.0 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.97 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 98.95 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.88 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.87 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.85 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.78 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.75 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.75 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.72 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 98.72 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 98.65 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.64 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 98.64 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 98.63 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.63 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 98.62 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.58 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 98.58 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.56 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 98.54 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.53 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 98.49 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.46 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 98.4 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.39 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 98.39 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.37 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 98.36 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 98.34 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.32 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 98.31 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 98.3 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 98.29 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 98.28 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 98.28 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 98.26 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 98.23 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.19 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 98.13 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 98.11 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.11 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 98.09 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.05 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.03 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.02 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 97.99 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 97.98 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.98 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 97.97 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 97.97 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.96 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.94 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.93 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 97.9 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 97.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 97.88 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 97.86 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.84 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 97.83 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.79 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.75 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 97.72 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 97.71 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 97.43 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.38 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 97.35 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.34 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 97.3 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 97.04 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 96.79 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.76 | |
| d1mkya3 | 81 | Probable GTPase Der, C-terminal domain {Thermotoga | 96.75 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 96.73 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.64 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 96.51 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 96.45 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.19 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 95.99 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.99 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.92 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.86 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.61 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.56 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 95.52 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 95.48 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 95.42 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 95.23 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 95.21 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 95.18 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.17 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 95.15 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 95.1 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 95.09 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 95.08 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.07 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 94.94 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 94.92 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 94.92 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 94.88 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.87 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.87 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.84 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.75 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 94.74 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.74 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 94.7 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 94.66 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.63 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 94.61 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 94.58 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.57 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.51 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 94.42 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 94.4 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.32 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.3 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 94.3 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.29 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.28 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.27 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.22 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.2 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.08 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 94.04 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.03 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.03 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.82 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.79 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.79 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 93.69 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.68 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.65 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.62 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.58 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.58 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.37 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.36 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.22 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.11 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.1 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.06 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.05 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.97 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.87 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.83 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.82 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.79 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.66 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.62 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.62 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.49 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.4 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.39 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.38 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.16 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.1 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.08 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.06 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 92.03 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 91.94 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.85 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.77 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.7 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.65 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.37 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.21 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.12 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.12 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.01 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.98 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 90.87 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.83 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.8 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.76 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.65 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.24 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 90.21 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.17 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.14 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.11 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.93 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.93 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.74 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.54 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.38 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.25 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.22 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 89.08 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.98 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.92 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.85 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 88.82 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 88.66 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 88.63 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 88.62 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.49 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.49 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 88.43 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 88.41 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.39 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 88.22 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 88.12 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.99 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.85 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.75 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 87.73 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 87.67 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 87.53 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 87.43 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.43 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.41 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 87.39 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 87.13 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 86.97 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 86.95 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 86.87 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.82 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.71 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 86.69 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.67 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 86.58 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.52 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 86.45 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 86.26 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 86.24 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 86.23 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 86.17 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 86.12 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 86.07 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.06 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 86.02 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 85.78 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 85.67 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 85.64 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 85.63 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 85.42 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.18 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 85.11 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 84.91 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 84.9 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 84.8 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 84.79 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 84.7 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 84.65 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 84.41 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 84.2 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 84.11 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 83.97 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 83.94 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.82 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 83.63 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 83.51 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 83.14 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.07 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 83.05 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 82.84 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 82.78 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 82.67 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 82.35 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.03 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 81.51 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 81.3 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.78 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 80.77 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 80.05 |
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.84 E-value=4.7e-21 Score=188.69 Aligned_cols=167 Identities=18% Similarity=0.161 Sum_probs=109.9
Q ss_pred HHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceE
Q psy11743 162 TGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVAR 241 (551)
Q Consensus 162 ~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 241 (551)
.++++..++.+|+||+|+||+. +++..+..+.+.++ ++|.++|+||+|+++.+.... |...+... ....
T Consensus 6 ~r~i~~~i~~~DvIl~V~DaR~-P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~~~~~~-w~~~f~~~-------~~~~ 74 (273)
T d1puja_ 6 RREVTEKLKLIDIVYELVDARI-PMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQ-WKEHFENQ-------GIRS 74 (273)
T ss_dssp HHHHHHHGGGCSEEEEEEETTS-TTTTSCHHHHHHCS--SSCEEEEEECGGGSCHHHHHH-HHHHHHTT-------TCCE
T ss_pred HHHHHHHHHhCCEEEEEEECCC-CCCCCCHHHHHHHc--CCCeEEEEECccCCchHHHHH-HHHHHHhc-------CCcc
Confidence 5677888999999999999996 78777766666664 689999999999998764433 44444322 2356
Q ss_pred EEecccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhH
Q psy11743 242 VYIGSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTT 321 (551)
Q Consensus 242 v~iSa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss 321 (551)
+++|+.++.+.. .+...+... +.+...+.... .....+.+++++|.|||||||
T Consensus 75 i~isa~~~~~~~-------------~~~~~~~~~--------l~~~~~~~~~~------~~~~~~~~v~vvG~PNvGKSs 127 (273)
T d1puja_ 75 LSINSVNGQGLN-------------QIVPASKEI--------LQEKFDRMRAK------GVKPRAIRALIIGIPNVGKST 127 (273)
T ss_dssp EECCTTTCTTGG-------------GHHHHHHHH--------HHHHHHHHHHT------TCCCCCEEEEEEESTTSSHHH
T ss_pred ceeecccCCCcc-------------ccchhhhhh--------hhhhhhhhhhc------cCCCCceEEEEEecCccchhh
Confidence 789998877662 121111110 11111111110 112467899999999999999
Q ss_pred HHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCC
Q psy11743 322 FIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 322 ~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
++|+|.+++ .+.+++.||+||..+....+..+.++||||+..|..
T Consensus 128 liN~L~~~~--~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~~p~~ 172 (273)
T d1puja_ 128 LINRLAKKN--IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKF 172 (273)
T ss_dssp HHHHHHTSC--CC------------CCEEETTTEEEEECCCCCCSCC
T ss_pred hhhhhhccc--eEEECCcccccccceEEECCCCeEEecCCCccccCC
Confidence 999999998 689999999999877777788999999999998874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=8.9e-20 Score=167.61 Aligned_cols=151 Identities=23% Similarity=0.249 Sum_probs=106.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+.|+|+|.+|||||||+|+|+|.+...+...+++|.+......... +
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~----------------------~----------- 52 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG----------------------R----------- 52 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET----------------------T-----------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee----------------------e-----------
Confidence 5799999999999999999999987666666666665554332211 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~ 214 (551)
..+.++||||+...... ....+...+..++.+||++|+|+|++. +.+..+..+.+.++. .++|+++|+||+|+.
T Consensus 53 ~~~~~~DtpG~~~~~~~---~~~~~~~~~~~~~~~ad~il~v~D~~~-~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~ 128 (178)
T d1wf3a1 53 RQIVFVDTPGLHKPMDA---LGEFMDQEVYEALADVNAVVWVVDLRH-PPTPEDELVARALKPLVGKVPILLVGNKLDAA 128 (178)
T ss_dssp EEEEEEECCCCCCCCSH---HHHHHHHHHHHHTSSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred eeeeecccccccccccc---cchhcccccccccccccceeeeechhh-hhcccccchhhheeccccchhhhhhhcccccc
Confidence 45899999999764321 111234556677899999999999996 788888778888764 367999999999998
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...+.. .....+.+ +...++++||++|.|+
T Consensus 129 ~~~~~~--~~~~~~~~------~~~~~~~iSA~~~~gi 158 (178)
T d1wf3a1 129 KYPEEA--MKAYHELL------PEAEPRMLSALDERQV 158 (178)
T ss_dssp SSHHHH--HHHHHHTS------TTSEEEECCTTCHHHH
T ss_pred cCHHHH--HHHHHhhc------ccCceEEEecCCCCCH
Confidence 754321 11122212 2345678999887766
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.81 E-value=4e-20 Score=170.35 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=102.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
...|+++|++|+|||||+|+|++........ ..++.+...+..... +....+.+
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~--~~~~~~~~g~~~~~~--------------~~~~~~~~---------- 58 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHD--KLPESQKRGITIDIG--------------FSAFKLEN---------- 58 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC----------------------C--------------CCEEEETT----------
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcCceecc--cccceeeeeeecccc--------------ccccccCC----------
Confidence 3579999999999999999999865322221 112222111111000 00001111
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.++||||..+ +.+.+..++..+|++++|+|++. +...++.+++..+...++|+++|+||+|+..
T Consensus 59 -~~~~~~d~~g~~~-----------~~~~~~~~l~~~d~~ilv~d~~~-g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~ 125 (179)
T d1wb1a4 59 -YRITLVDAPGHAD-----------LIRAVVSAADIIDLALIVVDAKE-GPKTQTGEHMLILDHFNIPIIVVITKSDNAG 125 (179)
T ss_dssp -EEEEECCCSSHHH-----------HHHHHHHHTTSCCEEEEEEETTT-CSCHHHHHHHHHHHHTTCCBCEEEECTTSSC
T ss_pred -ccccccccccccc-----------cccchhhhhhhcccccccccccc-ccchhhhhhhhhhhhcCCcceeccccccccC
Confidence 4588999999753 67788888999999999999997 8888888888888889999999999999998
Q ss_pred HHHHHHHHHHHHHH-cccccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWS-LGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~-l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.++..... ..... +....+....+++++||++|.|+
T Consensus 126 ~~~~~~~~-~~~~~~~~~~~~~~~~~iv~iSA~~g~gi 162 (179)
T d1wb1a4 126 TEEIKRTE-MIMKSILQSTHNLKNSSIIPISAKTGFGV 162 (179)
T ss_dssp HHHHHHHH-HHHHHHHHHSSSGGGCCEEECCTTTCTTH
T ss_pred HHHHHHHH-HHHHHHHHHhhcCCCCeEEEEEccCCcCH
Confidence 76543221 11111 11112344568899999999998
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=2.8e-19 Score=164.68 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=103.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+++|++|||||||+|+|+|++. .+...|++|++.... .+ .
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~-~~~~~~g~T~~~~~~-~~------------------------------------~ 43 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEI-EW------------------------------------K 43 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEE-EE------------------------------------T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCEeeccccc-cc------------------------------------c
Confidence 599999999999999999999885 355566666554321 11 3
Q ss_pred CeEEEeCCCCCCCccccccc----ccchHHHHHHHHhccCEEEEEEeCCC----------CCCChHHHHHHHHHhCCCCc
Q psy11743 138 GISIVDTPGILSGEKQRVDR----GYDFTGVLEWFAERVDRIILLFDAHK----------LDISDEFRRSIEALRGHDDK 203 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~----~~~~~~~~~~~~~~aD~il~VvDa~~----------~~~~~~~~~~l~~l~~~~~~ 203 (551)
.+.++||||+.......... ...+.......++.+|++++|+|++. .+....+.++++.+...++|
T Consensus 44 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p 123 (184)
T d2cxxa1 44 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123 (184)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred cceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCC
Confidence 47899999985432211110 11123334456688999999999862 24666777888888888999
Q ss_pred EEEEEcCCCCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 204 IRIVLNKADMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 204 vilVlNK~Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+++|+||+|++...+ ....+... +...........+++||++|.|+
T Consensus 124 ~iiv~NK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vSA~~g~gi 170 (184)
T d2cxxa1 124 TIVAVNKLDKIKNVQEVINFLAEK---FEVPLSEIDKVFIPISAKFGDNI 170 (184)
T ss_dssp EEEEEECGGGCSCHHHHHHHHHHH---HTCCGGGHHHHEEECCTTTCTTH
T ss_pred EEEEEeeeehhhhHHHHHHHHHHH---hcccccccCCeEEEEECCCCCCH
Confidence 999999999886443 22222221 22211333445788999999887
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=7.4e-19 Score=160.21 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=100.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+|+|++|||||||+|+|+|.+...+...++.|+.......... . .
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~----------------------~-----------~ 48 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY----------------------G-----------K 48 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET----------------------T-----------E
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccc----------------------c-----------c
Confidence 699999999999999999999887656666666655543322111 0 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.+.++||||+........ ...+...+..++..+|++++++|++. +....+..++..++..++|+++|+||+|+.+..
T Consensus 49 ~~~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~~ad~i~~~~~~~~-~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~ 125 (171)
T d1mkya1 49 TFKLVDTCGVFDNPQDII--SQKMKEVTLNMIREADLVLFVVDGKR-GITKEDESLADFLRKSTVDTILVANKAENLREF 125 (171)
T ss_dssp EEEEEECTTTTSSGGGCC--CHHHHHHHHHHHTTCSEEEEEEETTT-CCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH
T ss_pred ccccccccceeeeecccc--ccccccccccccccCcEEEEeecccc-cccccccccccccccccccccccchhhhhhhhh
Confidence 488999999876443221 22245566777899999999999986 788888888888888899999999999997543
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+ ......+++++. .+++++||++|.|+
T Consensus 126 ~--~~~~~~~~~~~~------~~~i~iSAk~g~gi 152 (171)
T d1mkya1 126 E--REVKPELYSLGF------GEPIPVSAEHNINL 152 (171)
T ss_dssp H--HHTHHHHGGGSS------CSCEECBTTTTBSH
T ss_pred h--hHHHHHHHhcCC------CCeEEEecCCCCCH
Confidence 2 222333433332 24578999999988
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=5.5e-19 Score=163.14 Aligned_cols=164 Identities=17% Similarity=0.197 Sum_probs=105.6
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
....++|+|+|++|||||||+|+|+|.+...+...+.+|+....... .+.+
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~----------------------~~~~------- 55 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEV----------------------FIDG------- 55 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEE----------------------EETT-------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeee----------------------ccCC-------
Confidence 33468999999999999999999999886444444433333321111 1111
Q ss_pred CCCccCeEEEeCCCCCCCccc-ccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 133 SPVLKGISIVDTPGILSGEKQ-RVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~-~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.++||||+...... ...........+...+..+|++++|+|+.. +...+...++..+...+.|+++|+||+
T Consensus 56 ----~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~-~~~~~~~~~~~~~~~~~~~~i~v~nK~ 130 (186)
T d1mkya2 56 ----RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ-GITRQDQRMAGLMERRGRASVVVFNKW 130 (186)
T ss_dssp ----EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ----ceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccc-cchhhHHHHHHHHHHcCCceeeeccch
Confidence 44889999998642211 111122344566777899999999999986 888888899989988999999999999
Q ss_pred CCCCHHH-HHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQ-LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~-~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+....+ ....+...+... .....+.+++++||++|.|+
T Consensus 131 D~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vSa~~g~gv 170 (186)
T d1mkya2 131 DLVVHREKRYDEFTKLFREK--LYFIDYSPLIFTSADKGWNI 170 (186)
T ss_dssp GGSTTGGGCHHHHHHHHHHH--CGGGTTSCEEECBTTTTBSH
T ss_pred hhhcchhhhhhhHHHHHHHH--hcccCCCeEEEEeCCCCCCH
Confidence 9875432 111122222111 11344568899999999887
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=2.7e-18 Score=159.91 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=102.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCC-CCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDF-PGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~-~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..|+|+|+|.+|||||||+|+|+|++. +.+...+..|.+.......
T Consensus 22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~--------------------------------- 68 (195)
T d1svia_ 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN--------------------------------- 68 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc---------------------------------
Confidence 457999999999999999999999763 2223333333332221110
Q ss_pred CCccCeEEEeCCCCCCCcccccc--cccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVD--RGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~--~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.++|++|.......... ....+..........+|++++|+|++. +...++.++++.++..++|+++|+||+
T Consensus 69 ---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~-~~~~~~~~~~~~l~~~~~piivv~NK~ 144 (195)
T d1svia_ 69 ---DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYYGIPVIVIATKA 144 (195)
T ss_dssp ---TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred ---ccceEEEEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccc-cccccccccccccccccCcceechhhc
Confidence 34678999887653322111 111112233344567899999999996 788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.++.+..+........+. ..+..+++++||.+|.|+
T Consensus 145 D~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~SA~~~~gi 182 (195)
T d1svia_ 145 DKIPKGKWDKHAKVVRQTLN---IDPEDELILFSSETKKGK 182 (195)
T ss_dssp GGSCGGGHHHHHHHHHHHHT---CCTTSEEEECCTTTCTTH
T ss_pred cccCHHHHHHHHHHHHHHhc---ccCCCCEEEEeCCCCCCH
Confidence 99876655443333222222 235668899999999987
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.76 E-value=1e-19 Score=174.23 Aligned_cols=132 Identities=21% Similarity=0.237 Sum_probs=84.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEE-EeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAV-MYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i-~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+.|.|+|+|++|+|||||+|+|++..... ...+.++...... ...+....+.+.... .+. -.+..
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~-------- 69 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLK---KFS-IRETL-------- 69 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGG---GCG-GGGTC--------
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhhcchh--eecCceeeecccccccccccccccccccc---cee-ecccc--------
Confidence 35889999999999999999999976421 1111122211110 000000000000000 000 00111
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
.++.+|||||+.+ |...+..++..+|++|+|+|+.. ++..+...++..+...++|+|+|+||+|+
T Consensus 70 ---~~~~~iDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~p~iivlNK~D~ 134 (227)
T d1g7sa4 70 ---PGLFFIDTPGHEA-----------FTTLRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYRTPFVVAANKIDR 134 (227)
T ss_dssp ---CEEEEECCCTTSC-----------CTTSBCSSSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred ---cccccccccceec-----------ccccchhcccccceEEEEEeccc-CcccchhHHHHHhhcCCCeEEEEEECccC
Confidence 4589999999865 22233345678999999999996 89999999999999999999999999998
Q ss_pred CC
Q psy11743 214 VD 215 (551)
Q Consensus 214 ~~ 215 (551)
..
T Consensus 135 ~~ 136 (227)
T d1g7sa4 135 IH 136 (227)
T ss_dssp ST
T ss_pred CC
Confidence 74
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=8.3e-18 Score=154.45 Aligned_cols=150 Identities=16% Similarity=0.208 Sum_probs=97.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+.|+|+|++|||||||+|+|+|.+... ...+..|+........... .
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~~~-~~~~~~t~~~~~~~~~~~~---------------------~----------- 48 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHPKI-APYPFTTLSPNLGVVEVSE---------------------E----------- 48 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE-CCCTTCSSCCEEEEEECSS---------------------S-----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce-eccCCCceeeeeceeeecC---------------------C-----------
Confidence 459999999999999999999987542 2333334443332222110 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~vilVlNK~ 211 (551)
..+.++||||+..+... ...+.......+..+|++++++|+.. ........+..++. ..++|+++|+||+
T Consensus 49 ~~~~~~DtpG~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~ 123 (180)
T d1udxa2 49 ERFTLADIPGIIEGASE----GKGLGLEFLRHIARTRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123 (180)
T ss_dssp CEEEEEECCCCCCCGGG----SCCSCHHHHHHHTSSSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECC
T ss_pred CeEEEcCCCeeecCchH----HHHHHHHHHHHHHhhhhhhhhccccc-ccccchhhhhhhhhccccccchhhhhhhhhhh
Confidence 45899999999864332 12234456677899999999999874 22222223333322 2358999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+..+++.... ...+ .....+++++||++|.|+
T Consensus 124 D~~~~~~~~~~-~~~~-------~~~~~~~~~iSA~tg~gi 156 (180)
T d1udxa2 124 DLLEEEAVKAL-ADAL-------AREGLAVLPVSALTGAGL 156 (180)
T ss_dssp TTSCHHHHHHH-HHHH-------HTTTSCEEECCTTTCTTH
T ss_pred hhhhHHHHHHH-HHHH-------HhcCCeEEEEEcCCCCCH
Confidence 99987665432 2222 123457899999999998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=3.9e-18 Score=153.23 Aligned_cols=148 Identities=24% Similarity=0.314 Sum_probs=101.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|||||||+|+|+|++...+...++.|+.......... + .
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~----------------------~-----------~ 48 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR----------------------G-----------I 48 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET----------------------T-----------E
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC----------------------C-----------e
Confidence 799999999999999999999987655556655544432211100 0 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
.+.++||||+........+. . ........+.++|++++|+|+++ +...++..+...+. ..++++++||+|+.+..
T Consensus 49 ~~~~~Dt~G~~~~~~~~~~~-~-~~~~~~~~~~~ad~ii~v~d~~~-~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~~ 123 (160)
T d1xzpa2 49 LFRIVDTAGVRSETNDLVER-L-GIERTLQEIEKADIVLFVLDASS-PLDEEDRKILERIK--NKRYLVVINKVDVVEKI 123 (160)
T ss_dssp EEEEEESSCCCSSCCTTCCC-C-CHHHHHHHHHHCSEEEEEEETTS-CCCHHHHHHHHHHT--TSSEEEEEEECSSCCCC
T ss_pred eEEeccccccccCCccHHHH-H-HHHHHHHHHHhCCEEEEEEeCCC-Ccchhhhhhhhhcc--cccceeeeeeccccchh
Confidence 48899999987643322221 1 23455667899999999999997 77777766666553 57899999999998754
Q ss_pred HHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 218 QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
...+.. ..++. ..+++++||++|.|+
T Consensus 124 ~~~~~~----~~~~~-----~~~~~~vSA~~g~gi 149 (160)
T d1xzpa2 124 NEEEIK----NKLGT-----DRHMVKISALKGEGL 149 (160)
T ss_dssp CHHHHH----HHHTC-----STTEEEEEGGGTCCH
T ss_pred hhHHHH----HHhCC-----CCcEEEEECCCCCCH
Confidence 332221 11222 346889999999987
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.4e-17 Score=148.15 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=99.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|++|||||||+|+|+|.+...+...++++++......... +
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~----------------- 48 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID----------------G----------------- 48 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET----------------T-----------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeecc----------------C-----------------
Confidence 5799999999999999999999987666667776666544322111 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh--CCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR--GHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~~vilVlNK~Dl~ 214 (551)
..+.++||||+.+...... ......+..+...+|++++++|+...........+...+. ..++|+++|+||+|+.
T Consensus 49 ~~~~~~d~~g~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~ 125 (161)
T d2gj8a1 49 MPLHIIDTAGLREASDEVE---RIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 125 (161)
T ss_dssp EEEEEEECCCCSCCSSHHH---HHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred ceeeeccccccccccccch---hHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhh
Confidence 3488999999987432211 1123445566789999999999986333222222233333 3478999999999986
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+... .+ ......+++++||++|.|+
T Consensus 126 ~~~~----------~~---~~~~~~~~~~iSAk~~~gi 150 (161)
T d2gj8a1 126 GETL----------GM---SEVNGHALIRLSARTGEGV 150 (161)
T ss_dssp CCCC----------EE---EEETTEEEEECCTTTCTTH
T ss_pred hhHH----------HH---HHhCCCcEEEEECCCCCCH
Confidence 5321 11 1234557899999999988
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=2.7e-17 Score=151.57 Aligned_cols=151 Identities=20% Similarity=0.219 Sum_probs=93.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
+.|+|+|++|||||||+|+|+|.+.. +...+.+|++......... ..
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~-~~~~~~~T~~~~~~~~~~~---------------------~~----------- 48 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETD---------------------DG----------- 48 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECS---------------------SS-----------
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc-eecCCCceEeeeeceeEec---------------------CC-----------
Confidence 46999999999999999999998863 3334444544432211110 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH--H---HHh---CCCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI--E---ALR---GHDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l--~---~l~---~~~~~vilVl 208 (551)
+.+.++||||+..... ............+.+++.++++++.............. . ... ..++|+++|+
T Consensus 49 ~~~~~~DtpG~~~~~~----~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~ 124 (185)
T d1lnza2 49 RSFVMADLPGLIEGAH----QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124 (185)
T ss_dssp CEEEEEEHHHHHHHTT----CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred cEEEEecCCCcccCch----HHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhc
Confidence 4589999999753211 11223445566678899999999877422222221111 1 111 1368999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+..+..+. ....++. ..+++++||++|.|+
T Consensus 125 NK~Dl~~~~~~~~~---~~~~~~~-----~~~v~~iSA~~g~Gi 160 (185)
T d1lnza2 125 NKMDMPEAAENLEA---FKEKLTD-----DYPVFPISAVTREGL 160 (185)
T ss_dssp ECTTSTTHHHHHHH---HHHHCCS-----CCCBCCCSSCCSSTT
T ss_pred cccchHhHHHHHHH---HHHHhcc-----CCcEEEEECCCCCCH
Confidence 99999876543222 2222322 346788999999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.68 E-value=1.3e-16 Score=148.55 Aligned_cols=170 Identities=20% Similarity=0.180 Sum_probs=100.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCC--CCCCccceEEEEEeC---CCccccCCCCcccccccccccccceeEEec
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHI--GPEPTTDRFIAVMYD---EREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~--~~~~tt~~~~~i~~~---~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
..|+++|+.++|||||+|+|+|........ ..+.|.+........ .............. .+.....
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------- 76 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPY--CGHETEF------- 76 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTT--TCCBCEE-------
T ss_pred EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeee--eeeeecC-------
Confidence 357999999999999999999854221111 222233322111110 00000000000000 0000000
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCCCc-EEEEEc
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHDDK-IRIVLN 209 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~~~-vilVlN 209 (551)
...+++|||||+.+ |...+...+..+|++++|+|+.. +. ..+..+.+..+...+.| +++++|
T Consensus 77 ----~~~~~~iDtPGh~~-----------f~~~~~~~~~~~d~~ilvvda~~-g~~~~~t~e~~~~~~~~~~~~iiv~in 140 (195)
T d1kk1a3 77 ----VRRVSFIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANE-PCPRPQTREHLMALQIIGQKNIIIAQN 140 (195)
T ss_dssp ----EEEEEEEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTS-CSSCHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred ----ceeEeeeccchhhh-----------hhHHhhcccccccccccccchhh-hhhhhhhHHHHHHHHHhcCccceeeee
Confidence 04589999999753 77788888899999999999996 54 44556666666655555 788899
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.......+......+.. .....+|++++||++|.|+
T Consensus 141 K~D~~d~~~~~~~~~~~~~~~~~-~~~~~~~iIpiSA~~G~ni 182 (195)
T d1kk1a3 141 KIELVDKEKALENYRQIKEFIEG-TVAENAPIIPISALHGANI 182 (195)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTT-STTTTCCEEECBTTTTBSH
T ss_pred cccchhhHHHHHHHHHHHHHhcc-ccCCCCeEEEEECCCCCCH
Confidence 99999876544333322222222 1234568899999999987
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.68 E-value=9.8e-17 Score=150.63 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=76.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHHHHHHhCCCC-cEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRSIEALRGHDD-KIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~l~~l~~~~~-~vilVlNK~Dl~ 214 (551)
+.+++|||||+.+ |...+...+..+|++|+|+|+.. ++ ..+.++.+..+...+. |+++++||+|+.
T Consensus 86 r~~~iiD~PGH~d-----------f~~~~~~~~~~ad~ailvVda~~-gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~ 153 (205)
T d2qn6a3 86 RRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANE-PFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 153 (205)
T ss_dssp EEEEEEECSCHHH-----------HHHHHHHTSSCCSEEEEEEETTS-CSSCHHHHHHHHHHHHTTCCCEEEEEECGGGS
T ss_pred EEEEEeccchHHH-----------HHhhhhcceeccccccccccccc-cccchhHHHHHHHHHHcCCceeeeccccCCCc
Confidence 5689999999865 77788888899999999999996 65 5566677777776665 788889999999
Q ss_pred CHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+..+...........+.. ......|++++||++|.|+
T Consensus 154 ~~~~~~~~~~~~~~~l~~-~~~~~~p~ipiSA~~g~nI 190 (205)
T d2qn6a3 154 SKEEALSQYRQIKQFTKG-TWAENVPIIPVSALHKINI 190 (205)
T ss_dssp CHHHHHHHHHHHHHHHTT-STTTTCCEEECBTTTTBSH
T ss_pred cchHHHHHHHHHHHHhcc-ccCCCCeEEEEeCCCCCCh
Confidence 876544333222222222 1334568999999999887
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=5.8e-16 Score=145.47 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=101.2
Q ss_pred HhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEeccc
Q psy11743 169 AERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSF 247 (551)
Q Consensus 169 ~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~ 247 (551)
+.+.|.+++|+.+..+.++... .+++-.+...+.+.++|+||+|+.++++.... ........ ...+++++|++
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~-~~~~~~~~-----~~~~v~~vSa~ 81 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKV-RELEEIYS-----GLYPIVKTSAK 81 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHH-HHHHHHHT-----TTSCEEECCTT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHH-HHhhcccc-----cceeEEEeccc
Confidence 4789999999998765666543 45666667789999999999999987654332 22221111 12468899998
Q ss_pred CCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHHHHH
Q psy11743 248 WDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIRYLL 327 (551)
Q Consensus 248 ~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n~l~ 327 (551)
++.++ ++|.+.+ +..+.+++|++|||||||+|+|.
T Consensus 82 ~~~g~-------------~~L~~~l--------------------------------~~kt~~~~G~SGVGKSTLiN~L~ 116 (225)
T d1u0la2 82 TGMGI-------------EELKEYL--------------------------------KGKISTMAGLSGVGKSSLLNAIN 116 (225)
T ss_dssp TCTTH-------------HHHHHHH--------------------------------SSSEEEEECSTTSSHHHHHHHHS
T ss_pred cchhH-------------hhHHHHh--------------------------------cCCeEEEECCCCCCHHHHHHhhc
Confidence 88876 4443333 23478999999999999999999
Q ss_pred hCCC-Cccccc----CCCcccceEEEEecCCCccccCCceeecCCCC
Q psy11743 328 ERDF-PGIHIG----PEPTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 328 ~~~~-~~~~v~----~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
+... .-..++ ...+||++.....-+....++||||++.-+..
T Consensus 117 ~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~~l~ 163 (225)
T d1u0la2 117 PGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEIN 163 (225)
T ss_dssp TTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCC
T ss_pred chhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCcccccccc
Confidence 8742 112222 23457776665555566899999999887643
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.64 E-value=3.1e-16 Score=145.79 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=75.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCC-CcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHD-DKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~~vilVlNK~Dl~~ 215 (551)
+.++++||||+.+ |.+.+...+..+|++++|+|+.. +...+..+.+..+...+ +++|+++||+|++.
T Consensus 66 ~~~~~iDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~-G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~ 133 (196)
T d1d2ea3 66 RHYAHTDCPGHAD-----------YVKNMITGTAPLDGCILVVAAND-GPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (196)
T ss_dssp CEEEEEECSSHHH-----------HHHHHHHTSSCCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred eeEEeecCcchHH-----------HHHHHHHHHhhcCeEEEEEEcCC-CCchhHHHHHHHHHHhcCCcEEEEEecccccc
Confidence 5699999999864 77788888899999999999997 89999999888887755 46888999999987
Q ss_pred HHHHHHHH----HHHHHHcccccCCCCceEEEecccCCC
Q psy11743 216 HQQLMRVY----GALMWSLGKVLQTPEVARVYIGSFWDQ 250 (551)
Q Consensus 216 ~~~~~~~~----~~~~~~l~~l~~~~~~~~v~iSa~~g~ 250 (551)
.++..+.+ ...+...+. .....|++++||+.|.
T Consensus 134 ~~~~~~~i~~~i~~~l~~~~~--~~~~~pii~iSa~~g~ 170 (196)
T d1d2ea3 134 DSEMVELVELEIRELLTEFGY--KGEETPIIVGSALCAL 170 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS--CTTTSCEEECCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCC--CcccCEEEEEEccccc
Confidence 54433222 222322333 2234688999998764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.1e-15 Score=151.79 Aligned_cols=160 Identities=18% Similarity=0.255 Sum_probs=110.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCcccc------CCCCc---ccc----------
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSV------PFSPL---DKF---------- 115 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i------~g~~~---~~~---------- 115 (551)
..|+|+|+|..|+|||||+|+|+|.++ .+.+++|||..++.+.++...... ++... ..+
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~--lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC--SCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCc--CCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999986 578888899999988887543211 12111 111
Q ss_pred -cccccccccceeEEecCCCCccCeEEEeCCCCCCCccccccc--ccchHHHHHHHHhccC-EEEEEEeCCCCCCCh-HH
Q psy11743 116 -GKFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQRVDR--GYDFTGVLEWFAERVD-RIILLFDAHKLDISD-EF 190 (551)
Q Consensus 116 -~~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~~~~--~~~~~~~~~~~~~~aD-~il~VvDa~~~~~~~-~~ 190 (551)
...+..+......+.++++.+..+++|||||+.......... ...+...+..++..++ ++++|.++.. +.+. ..
T Consensus 103 ~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~-~~~~~~~ 181 (299)
T d2akab1 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS-CGGGCHH
T ss_pred hhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeeccccc-chhhhHH
Confidence 111222334466777888888999999999998754322211 1123456677777777 5566777764 4444 33
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 191 RRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 191 ~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
..+++.+.....++++|+||+|..++.
T Consensus 182 ~~~~~~~~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 182 LKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHhCcCCCceeeEEeccccccch
Confidence 567777777888999999999998753
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=3.6e-15 Score=139.59 Aligned_cols=99 Identities=24% Similarity=0.244 Sum_probs=73.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
..++||||||+.+ |...+...+..+|++|+|+|+.. +...+..+.+..+...+.| +++++||+|+++
T Consensus 67 ~~i~iiDtPGh~d-----------f~~~~~~~~~~aD~avlVvda~~-Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 67 RHYSHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFMNKVDMVD 134 (204)
T ss_dssp CEEEEEECCCSGG-----------GHHHHHHHHTTCSSEEEEEETTT-CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred eEEEEEeCCCchh-----------hHHHHHHHHHHCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEEecccCC
Confidence 5699999999875 77888899999999999999996 9999999999999988876 677899999987
Q ss_pred HHHHHHH----HHHHHHHcccccCCCCceEEEecccCC
Q psy11743 216 HQQLMRV----YGALMWSLGKVLQTPEVARVYIGSFWD 249 (551)
Q Consensus 216 ~~~~~~~----~~~~~~~l~~l~~~~~~~~v~iSa~~g 249 (551)
.++..+. +...+...++ .....+.+..|++.+
T Consensus 135 ~~~~~~~~~~~i~~~l~~~~~--~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 135 DPELLDLVEMEVRDLLNQYEF--PGDEVPVIRGSALLA 170 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHTTS--CTTTSCEEECCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCC--Ccccceeeeeechhh
Confidence 5433222 2222222222 222346677777544
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.61 E-value=3.9e-15 Score=140.94 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=78.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
+.+.+|||||+.+ |...+...+..+|++++|+|+.. +...+..+.+..+...+.+ +++++||+|+.+
T Consensus 89 ~~~~iiD~PGH~d-----------fv~~~~~g~~~aD~ailVvda~~-G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~ 156 (222)
T d1zunb3 89 RKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARY-GVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 156 (222)
T ss_dssp EEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred eEEEEEeccchhh-----------hhhhhccccccCceEEEEecccc-CcccchHHHHHHHHHcCCCEEEEEEEcccccc
Confidence 5799999999975 77788888999999999999996 8999999999988888854 889999999986
Q ss_pred H-HHHHH----HHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 216 H-QQLMR----VYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 216 ~-~~~~~----~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
. +.... .+...+...++ .....+++++||++|.|+.
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~--~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 157 FDERVFESIKADYLKFAEGIAF--KPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTC--CCSEEEEEECCTTTCTTTS
T ss_pred ccceehhhhHHHHhhhhHhhcc--CCCceEEEEEEcccCccCC
Confidence 2 22211 12222333333 2234577899999999883
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.61 E-value=1.5e-15 Score=138.36 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=92.5
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+...+|+++|.+|||||||+|+|.+..+..+....+.+ ...+.+ + +
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~i~~------------------~-----~-------- 59 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN---IKSVQS------------------Q-----G-------- 59 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE---EEEEEE------------------T-----T--------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeee---EEEecc------------------C-----C--------
Confidence 35679999999999999999999988753211111111 001110 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++|+||... +......++..+|++++|+|+.+.........+...+. ..+.|+++|+|
T Consensus 60 ---~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~n 125 (176)
T d1fzqa_ 60 ---FKLNVWDIGGQRK-----------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125 (176)
T ss_dssp ---EEEEEEECSSCGG-----------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred ---eeEeEeecccccc-----------chhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEE
Confidence 3488999999764 56667788899999999999985222222223333322 24689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..+.... ...+ .+.. ......+++.+||++|.|+
T Consensus 126 K~Dl~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~SA~tg~gv 165 (176)
T d1fzqa_ 126 KQDLLTAAPASEI-AEGL-NLHT-IRDRVWQIQSCSALTGEGV 165 (176)
T ss_dssp CTTSTTCCCHHHH-HHHT-TGGG-CCSSCEEEEECCTTTCTTH
T ss_pred eccccccccHHHH-HHHH-HHHH-HHhcCCEEEEEeCCCCCCH
Confidence 9999864332221 1111 1111 1223456788999999988
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.3e-15 Score=137.79 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=90.9
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
.+..++|+++|.+|||||||+|+|++.+..........++.........
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 61 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA------------------------------- 61 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-------------------------------
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecc-------------------------------
Confidence 3467999999999999999999999987543322222222222221111
Q ss_pred CCCccCeEEEeCCCC--CCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 133 SPVLKGISIVDTPGI--LSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi--~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
.....+++.+. ........................++.++.+.|+.. +........+..+.....++++++||
T Consensus 62 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~k 136 (188)
T d1puia_ 62 ----DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVDSNIAVLVLLTK 136 (188)
T ss_dssp ----TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ----cccceeeeecccccchhhhhhhhhhhhhhhhhhhhhheeEEEEeecccc-cchhHHHHHHHHhhhccccccchhhh
Confidence 11333333332 221111000000011112223355566777777775 77787888888888888999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|++...+...........+.. ..+..+++++||++|.|+
T Consensus 137 ~D~~~~~~~~~~~~~~~~~l~~--~~~~~~~i~vSA~~g~Gi 176 (188)
T d1puia_ 137 ADKLASGARKAQLNMVREAVLA--FNGDVQVETFSSLKKQGV 176 (188)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGG--GCSCEEEEECBTTTTBSH
T ss_pred hhccCHHHHHHHHHHHHHHHHh--hCCCCcEEEEeCCCCCCH
Confidence 9999876654433333222322 234568899999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.4e-15 Score=138.23 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=89.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||+++|++..+.. ...+.++.+.... +.... ..
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~-~~~~~~~~~~~~~~~~~~~-----------------~~------------ 53 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEING-----------------EK------------ 53 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETT-----------------EE------------
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCC-cccccccceEEEEEEEECC-----------------EE------------
Confidence 34789999999999999999999887531 2222222222111 11110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK 210 (551)
-.+.++||||... +......++..+|++++|+|..+........++...+. ....|+++|.||
T Consensus 54 ---~~l~i~Dt~G~e~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK 119 (171)
T d2ew1a1 54 ---VKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 119 (171)
T ss_dssp ---EEEEEEEECCSGG-----------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ---EEEEEEECCCchh-----------hHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEee
Confidence 2378999999643 45555667799999999999885222222233443332 346789999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+....++. +......... ..+.+.+||++|.|+
T Consensus 120 ~D~~~~~~v~~~~~~~~~~~~-------~~~~~~~SAktg~gV 155 (171)
T d2ew1a1 120 IDLAERREVSQQRAEEFSEAQ-------DMYYLETSAKESDNV 155 (171)
T ss_dssp GGGGGGCSSCHHHHHHHHHHH-------TCCEEECCTTTCTTH
T ss_pred cccccccchhhhHHHHHHHhC-------CCEEEEEccCCCCCH
Confidence 9986432211 1111111111 225678999999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.60 E-value=3e-15 Score=149.04 Aligned_cols=160 Identities=17% Similarity=0.208 Sum_probs=99.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCC-----------------CCccccc--
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPF-----------------SPLDKFG-- 116 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g-----------------~~~~~~~-- 116 (551)
.|+|+|||..++|||||+|+|+|.++ .+++.+|+|...+.+.++.......+ ..+..+.
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~--lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDF--LPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC--CCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHhCCCC--CCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHH
Confidence 58999999999999999999999986 47788889999999988754332221 0111110
Q ss_pred ---------ccccccccceeEEecCCCCccCeEEEeCCCCCCCcccc--cccccchHHHHHHHHhccCEEE-EEEeCCCC
Q psy11743 117 ---------KFGNSFLNRFQCSLVNSPVLKGISIVDTPGILSGEKQR--VDRGYDFTGVLEWFAERVDRII-LLFDAHKL 184 (551)
Q Consensus 117 ---------~~g~~~~~~~~~~~~~~~~l~~~~lIDTPGi~~~~~~~--~~~~~~~~~~~~~~~~~aD~il-~VvDa~~~ 184 (551)
.-+..+......+.++.+.+..+++|||||+....... ..........+..++..++.++ +|+++...
T Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~ 181 (306)
T d1jwyb_ 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (306)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccc
Confidence 00122233445566777788899999999998643221 1222335567788899999754 45566543
Q ss_pred CCChHHHHHHHHHhCCCCcEEEEEcCCCCCCHH
Q psy11743 185 DISDEFRRSIEALRGHDDKIRIVLNKADMVDHQ 217 (551)
Q Consensus 185 ~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~~ 217 (551)
..+.....+++.+.....++++|+||+|.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (306)
T ss_dssp STTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred ccccHHHHHHHHhCcCCCeEEEEEeccccccch
Confidence 344455677777777778999999999998653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.3e-15 Score=138.11 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=88.7
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++..+.. ...+.++.+......... +.
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~----------------~~--------------- 52 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRN----------------DK--------------- 52 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEET----------------TE---------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCc-ccccccccceeeEEEEee----------------cc---------------
Confidence 4689999999999999999999887532 112222222221111100 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~D 212 (551)
...+.+|||||... +......++..+|++|+|+|+.+.........+...+. ....|+++|.||+|
T Consensus 53 ~~~l~~wDt~G~e~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 121 (169)
T d3raba_ 53 RIKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121 (169)
T ss_dssp EEEEEEEEECCSGG-----------GHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTT
T ss_pred eEEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecc
Confidence 03488999999643 45556667899999999999985222222223333222 34678899999999
Q ss_pred CCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.....+. +.........+ .+.+.+||++|.|+
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~-------~~~~e~Sak~g~gv 155 (169)
T d3raba_ 122 MEDERVVSSERGRQLADHLG-------FEFFEASAKDNINV 155 (169)
T ss_dssp CGGGCCSCHHHHHHHHHHHT-------CEEEECBTTTTBSH
T ss_pred cccccccchhhhHHHHHHcC-------CEEEEecCCCCcCH
Confidence 86432110 11111111122 26788999999988
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.7e-16 Score=141.04 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=80.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
++|+++|.+|||||||+|+|.+...... .+|... +. .+..+ |..
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~----~~~~~~~~~~~i~~~-----------------~~~------------- 47 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE----AEAAGHTYDRSIVVD-----------------GEE------------- 47 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-------------CEEEEEEEEET-----------------TEE-------------
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc----CCeeeeeecceeecc-----------------ccc-------------
Confidence 5799999999999999999998764211 111111 11 11110 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++.........+...+. ....|+++|.||
T Consensus 48 --~~l~i~D~~g~e~-----------~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK 114 (168)
T d2gjsa1 48 --ASLMVYDIWEQDG-----------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 114 (168)
T ss_dssp --EEEEEEECC------------------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEC
T ss_pred --cceeeeecccccc-----------cceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecc
Confidence 3488999999754 34455677899999999999986222222234444443 235789999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..++.. ......... ..+.+.+||++|.|+
T Consensus 115 ~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e~Sak~~~~v 150 (168)
T d2gjsa1 115 SDLVRSREVSVDEGRACAVVF-------DCKFIETSAALHHNV 150 (168)
T ss_dssp TTCGGGCCSCHHHHHHHHHHH-------TSEEEECBTTTTBSH
T ss_pred cchhhhcchhHHHHHHHHHhc-------CCEEEEEeCCCCcCH
Confidence 99875422111 111111111 235678999999988
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.58 E-value=2.4e-15 Score=135.47 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=90.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|.+..+. ...||......... ++ +
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~----~~~~t~~~~~~~~~-----------------~~-----~---------- 45 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVD----TISPTLGFNIKTLE-----------------HR-----G---------- 45 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCS----SCCCCSSEEEEEEE-----------------ET-----T----------
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCC----cccceEeeeeeecc-----------------cc-----c----------
Confidence 468999999999999999999987642 23334322211100 00 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH-HHHh---CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI-EALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l-~~l~---~~~~~vilVlNK~ 211 (551)
..+.++||||... +......++..+|++++|+|+.+..........+ ..+. ..+.|+++|+||+
T Consensus 46 -~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 113 (165)
T d1ksha_ 46 -FKLNIWDVGGQKS-----------LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 113 (165)
T ss_dssp -EEEEEEEECCSHH-----------HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred -cceeeeecCcchh-----------hhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecc
Confidence 3489999999643 2333445568999999999988532222323333 3332 3568999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+.....+.. . ...+..+ .....+++.+||++|.|+
T Consensus 114 Dl~~~~~~~~~~-~-~~~~~~~-~~~~~~~~~~Sa~~g~gv 151 (165)
T d1ksha_ 114 DLPGALSCNAIQ-E-ALELDSI-RSHHWRIQGCSAVTGEDL 151 (165)
T ss_dssp TSTTCCCHHHHH-H-HTTGGGC-CSSCEEEEECCTTTCTTH
T ss_pred ccccccCHHHHH-H-HHHhhhh-hcCCCEEEEEECCCCCCH
Confidence 996532222211 1 1111222 233456788999999988
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=1.2e-15 Score=137.70 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=87.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|++..+.. ...|....+......... +. .
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~-~~~~ti~~~~~~~~~~~~----------------~~---------------~ 50 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVN----------------DE---------------D 50 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEET----------------TE---------------E
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCc-ccccccccccceeeeeec----------------Cc---------------e
Confidence 579999999999999999999876531 111211112221111100 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC--CCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG--HDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~~vilVlNK~Dl~ 214 (551)
..+.++||+|.... ......++..+|++++|+|..+.........++..+.+ .+.|+++|.||+|+.
T Consensus 51 ~~~~i~d~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~ 119 (164)
T d1z2aa1 51 VRLMLWDTAGQEEF-----------DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 119 (164)
T ss_dssp EEEEEECCTTGGGT-----------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred eeeeeeccCCccch-----------hhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcc
Confidence 34789999997642 22234567899999999999852222222344444432 478999999999986
Q ss_pred CHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+...+. +......... ..+.+.+||++|.|+
T Consensus 120 ~~~~v~~~~~~~~~~~~-------~~~~~e~Sak~g~~v 151 (164)
T d1z2aa1 120 DDSCIKNEEAEGLAKRL-------KLRFYRTSVKEDLNV 151 (164)
T ss_dssp GGCSSCHHHHHHHHHHH-------TCEEEECBTTTTBSS
T ss_pred cceeeeehhhHHHHHHc-------CCEEEEeccCCCcCH
Confidence 542211 1111111111 135788999999998
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-15 Score=138.81 Aligned_cols=145 Identities=14% Similarity=0.193 Sum_probs=89.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE---EEEEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~---~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
..+|+++|.+|||||||+|+|++.++.. ...+|.... ..+.... .
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~----------------~------------- 52 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKD---DSNHTIGVEFGSKIINVGG----------------K------------- 52 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCT---TCCCCSEEEEEEEEEEETT----------------E-------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCc---ccccccccceeeEEEEecC----------------c-------------
Confidence 4689999999999999999999887532 222222111 1111110 0
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEc
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLN 209 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlN 209 (551)
...+.++||||... +......++..+|++++|+|..+.........+...+. ..+.|+++|.|
T Consensus 53 ---~~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~n 118 (174)
T d2bmea1 53 ---YVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 118 (174)
T ss_dssp ---EEEEEEEEECCSGG-----------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ---ceeEEEEECCCchh-----------hhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEe
Confidence 03488999999653 56666777899999999999985221112223333222 34789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+....+........+.. ....+.+.+||++|.|+
T Consensus 119 K~D~~~~~~~~~~~~~~~~~------~~~~~~~e~Sak~~~gi 155 (174)
T d2bmea1 119 KKDLDADREVTFLEASRFAQ------ENELMFLETSALTGENV 155 (174)
T ss_dssp CGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTTH
T ss_pred cccccchhchhhhHHHHHHH------hCCCEEEEeeCCCCcCH
Confidence 99985432221111111111 11236788999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.1e-15 Score=139.51 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=88.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+|+|.+|||||||+|+|++..+... ..+.++.+. ...+..+. .
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~-------------- 51 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDG-----------------K-------------- 51 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETT-----------------E--------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCc-ccccccceeeeEEEEECC-----------------E--------------
Confidence 46899999999999999999999875322 122222222 11111111 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|..+........+++..+. ..+.|+++|.||+
T Consensus 52 -~~~~~i~d~~g~e~-----------~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~ 119 (175)
T d2f9la1 52 -TIKAQIWDTAGQER-----------YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 119 (175)
T ss_dssp -EEEEEEEECSSGGG-----------TTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred -EEEEEecccCCcHH-----------HHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeee
Confidence 02478999999643 23334456789999999999986322222334444443 3457999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+............. . ....+.+.+||++|.|+
T Consensus 120 Dl~~~~~~~~~~~~~~~-~-----~~~~~~~e~Sa~~g~~i 154 (175)
T d2f9la1 120 DLRHLRAVPTDEARAFA-E-----KNNLSFIETSALDSTNV 154 (175)
T ss_dssp TCGGGCCSCHHHHHHHH-H-----HTTCEEEECCTTTCTTH
T ss_pred cccccccchHHHHHHhh-c-----ccCceEEEEecCCCcCH
Confidence 98753211111111111 1 12346788999999988
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.1e-15 Score=135.69 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=88.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|++..+. ....||.......... +. +. .
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~f~---~~~~~T~~~~~~~~~~-----~~----------~~---------------~ 49 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGTFR---ESYIPTVEDTYRQVIS-----CD----------KS---------------I 49 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCC---SSCCCCSCEEEEEEEE-----ET----------TE---------------E
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---CccCcceeecccccee-----ec----------cc---------------c
Confidence 58999999999999999999997752 2333443321110000 00 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-----CCCCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-----GHDDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~~~~~vilVlNK~ 211 (551)
..+.++||+|... +......++..+|++++|+|+.+.........+...+. ..+.|+++|.||+
T Consensus 50 ~~l~~~d~~g~~~-----------~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~ 118 (171)
T d2erxa1 50 CTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 118 (171)
T ss_dssp EEEEEEECCSCSS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred ceecccccccccc-----------ccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecc
Confidence 2478899999875 45566778899999999999985222122233333322 2467999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+..++. +......... ..+.+.+||++|.|+
T Consensus 119 Dl~~~~~v~~~e~~~~~~~~-------~~~~~e~Sak~~~~v 153 (171)
T d2erxa1 119 DESPSREVQSSEAEALARTW-------KCAFMETSAKLNHNV 153 (171)
T ss_dssp GGGGGCCSCHHHHHHHHHHH-------TCEEEECBTTTTBSH
T ss_pred cccccccccHHHHHHHHHHc-------CCeEEEEcCCCCcCH
Confidence 986432211 1111111112 235678999999988
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=3e-15 Score=136.45 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=96.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
..|+|+|.+|||||||+|+|+|++...+...+.+++.......... .
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~----------------------~----------- 52 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG----------------------A----------- 52 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET----------------------T-----------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecC----------------------C-----------
Confidence 4699999999999999999999886555544444444443322211 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..+..+|+||.......... .............+|+++++.|+. +.......+...+.+...|.++|+||+|.+..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~ 128 (179)
T d1egaa1 53 YQAIYVDTPGLHMEEKRAIN--RLMNKAASSSIGDVELVIFVVEGT--RWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 128 (179)
T ss_dssp EEEEEESSSSCCHHHHHHHH--HHHTCCTTSCCCCEEEEEEEEETT--CCCHHHHHHHHHHHSSSSCEEEEEESTTTCCC
T ss_pred ceeEeecCCCceecchhhhh--hhhhhccccchhhcceeEEEEecC--ccchhHHHHHHHhhhccCceeeeeeeeeccch
Confidence 33677899988642111000 000001111235688888999987 45566667777778888899999999999875
Q ss_pred HHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 217 QQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 217 ~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
... ........ . .....+++++||++|.|+
T Consensus 129 ~~~~~~~~~~~~----~--~~~~~~~~~vSA~~g~gi 159 (179)
T d1egaa1 129 KADLLPHLQFLA----S--QMNFLDIVPISAETGLNV 159 (179)
T ss_dssp HHHHHHHHHHHH----T--TSCCSEEEECCTTTTTTH
T ss_pred hhhhhhHhhhhh----h--hcCCCCEEEEeCcCCCCH
Confidence 432 22221111 1 233457899999999887
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.5e-15 Score=138.33 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=82.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|++..+... ..+.++........... +...
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~-~~~t~~~~~~~~~~~~~------------------------------~~~~ 51 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQ-YKATIGADFLTKEVTVD------------------------------GDKV 51 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTT-C---CCCSCEEEEECCS------------------------------SSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCc-cCcccccceeeeeeeec------------------------------Cccc
Confidence 6899999999999999999999875321 11111111111111000 0000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-------CCCCcEEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-------GHDDKIRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~~vilVlN 209 (551)
..+.++||||... +......+...+|++++|+|+.+.........++..+. ....|+++|+|
T Consensus 52 ~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~n 120 (175)
T d1ky3a_ 52 ATMQVWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGN 120 (175)
T ss_dssp EEEEEECCC---------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred ccceeeccCCchh-----------hhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEec
Confidence 2378999999764 23334445689999999999985222222234444332 13679999999
Q ss_pred CCCCCCHHHH--HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL--MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~--~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.+.. .+......... ...+.+.+||++|.|+
T Consensus 121 K~Dl~~~~~~v~~~~~~~~~~~~------~~~~~~e~SA~~g~gv 159 (175)
T d1ky3a_ 121 KIDAEESKKIVSEKSAQELAKSL------GDIPLFLTSAKNAINV 159 (175)
T ss_dssp CTTSCGGGCCSCHHHHHHHHHHT------TSCCEEEEBTTTTBSH
T ss_pred ccchhhhhcchhHHHHHHHHHHc------CCCeEEEEeCCCCcCH
Confidence 9998753221 11111222222 2235678999999988
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.7e-15 Score=133.89 Aligned_cols=144 Identities=18% Similarity=0.258 Sum_probs=91.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE--EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.++|+++|.+|||||||+|+|++..+. ....+|..... .+... +..
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-----------------~~~------------ 50 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFV---DEYDPTIEDSYRKQVVID-----------------GET------------ 50 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC---CSCCCCSEEEEEEEEEET-----------------TEE------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC---CccCCccceeeccceeee-----------------cee------------
Confidence 468999999999999999999998753 22223322211 11111 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
..+.++|++|... +......++..+|++++|+|..+.........+...+. ..+.|+++|.|
T Consensus 51 ---~~l~~~d~~~~~~-----------~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (166)
T d1ctqa_ 51 ---CLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116 (166)
T ss_dssp ---EEEEEEEECCCGG-----------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEE
T ss_pred ---eeeeeeeccCccc-----------cccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 2478999999865 45556677899999999999986222223344444443 24689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.......+......... ..+.+.+||++|.|+
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~-------~~~~~e~Sak~g~gi 152 (166)
T d1ctqa_ 117 KCDLAARTVESRQAQDLARSY-------GIPYIETSAKTRQGV 152 (166)
T ss_dssp CTTCSCCCSCHHHHHHHHHHH-------TCCEEECCTTTCTTH
T ss_pred ccccccccccHHHHHHHHHHh-------CCeEEEEcCCCCcCH
Confidence 999865321111111111111 225678999999998
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.57 E-value=2.9e-15 Score=141.04 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=94.9
Q ss_pred HhccCEEEEEEeCCCCCCChHH-HHHHHHHhCCCCcEEEEEcCCCCCCHHHHHHHH---HHHHHHcccccCCCCceEEEe
Q psy11743 169 AERVDRIILLFDAHKLDISDEF-RRSIEALRGHDDKIRIVLNKADMVDHQQLMRVY---GALMWSLGKVLQTPEVARVYI 244 (551)
Q Consensus 169 ~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~~~~vilVlNK~Dl~~~~~~~~~~---~~~~~~l~~l~~~~~~~~v~i 244 (551)
+.+.|.+++|+.+.++++.... .+++-.....+.+.+||+||+|+.++.+..+.+ ...+..+| .+++.+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g-------~~v~~~ 80 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-------YDVYLT 80 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-------CCEEEC
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhcc-------ccceee
Confidence 4789999999998765665543 456666678899999999999999765433322 22222233 378899
Q ss_pred cccCCCCCcccccccccchhhhhhhhhhhcchhhhhhhhhHHHHHHHhhhcCCCCccccCCCcEEEEEeecCCChhHHHH
Q psy11743 245 GSFWDQPLVHDVNRRLFEDEEQDLFKDLQSLPRNAALRKLNDLIKRARLAKAPYEDADFDAKPTVMLVGQYSTGKTTFIR 324 (551)
Q Consensus 245 Sa~~g~~~~~~~~~~l~~~~~~~Ll~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gKss~~n 324 (551)
|+.++.++ ++|.+.+ +..+.+++|++|||||||+|
T Consensus 81 Sa~~~~gl-------------~~L~~~l--------------------------------~~~~~vl~G~SGVGKSSLiN 115 (231)
T d1t9ha2 81 SSKDQDSL-------------ADIIPHF--------------------------------QDKTTVFAGQSGVGKSSLLN 115 (231)
T ss_dssp CHHHHTTC-------------TTTGGGG--------------------------------TTSEEEEEESHHHHHHHHHH
T ss_pred ecCChhHH-------------HHHHHhh--------------------------------ccceEEEECCCCccHHHHHH
Confidence 99887776 3343333 23467899999999999999
Q ss_pred HHHhCCC-CcccccCC----CcccceEEEEecCCCccccCCceeecCCCC
Q psy11743 325 YLLERDF-PGIHIGPE----PTTDRFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 325 ~l~~~~~-~~~~v~~~----~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
+|++..- .--.|+.. -.||++...... ....++||||++.-+..
T Consensus 116 ~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~-~gg~iiDTPG~r~~~l~ 164 (231)
T d1t9ha2 116 AISPELGLRTNEISEHLGRGKHTTRHVELIHT-SGGLVADTPGFSSLEFT 164 (231)
T ss_dssp HHCC-------------------CCCCCEEEE-TTEEEESSCSCSSCCCT
T ss_pred hhccHhHhhhcccccccCCCceeeeeEEEEec-CCCEEEECCcccccccc
Confidence 9999841 11122222 235554333222 35679999999987754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.5e-15 Score=133.59 Aligned_cols=146 Identities=20% Similarity=0.258 Sum_probs=89.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+++|.+|||||||+|+|++.++... ..+..+..........+ +. .
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------~~---------------~ 48 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLE----------------DR---------------T 48 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCCSEEEEEEEEECS----------------SC---------------E
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCc-cccceeeeccceeeccC----------------CC---------------c
Confidence 4799999999999999999999876321 12211222211111110 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||+|... +......++..+|++++|+|..+.........+...+. ..+.|+++|.||+|+
T Consensus 49 ~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (164)
T d1yzqa1 49 IRLQLWDTAGQER-----------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 117 (164)
T ss_dssp EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTC
T ss_pred eeeeecccCCcch-----------hccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccch
Confidence 3478999999764 34456677899999999999985222222233333322 357889999999998
Q ss_pred CCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+..... +......... ..+.+.+||++|.|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~-------~~~~~e~SAk~g~~v 150 (164)
T d1yzqa1 118 ADKRQVSIEEGERKAKEL-------NVMFIETSAKAGYNV 150 (164)
T ss_dssp GGGCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred hhhhhhhHHHHHHHHHHc-------CCEEEEecCCCCcCH
Confidence 6432211 1111222111 235678999999998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.8e-15 Score=132.43 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=90.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+|+|.+|||||||+|+|++.++... ..+.++.+........+ + ..
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~----------~~-------------- 52 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD-CPHTIGVEFGTRIIEVS------G----------QK-------------- 52 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSS-CTTSCCCCEEEEEEEET------T----------EE--------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCc-ccccccccceeEEEEEC------C----------EE--------------
Confidence 36899999999999999999999876321 12222222221111100 0 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~D 212 (551)
..+.++||||... +......++..+|++++|+|..+.........+...+. ....|+++|.||+|
T Consensus 53 -~~l~i~D~~g~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~D 120 (166)
T d1z0fa1 53 -IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120 (166)
T ss_dssp -EEEEEEECTTGGG-----------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred -EEEEEeccCCchh-----------HHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEccccc
Confidence 2488999999653 44556677899999999999985222112233333333 44678999999999
Q ss_pred CCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+....... +......... ..+.+.+||++|.|+
T Consensus 121 l~~~~~~~~~~~~~~~~~~-------~~~~~e~Saktg~~v 154 (166)
T d1z0fa1 121 LEAQRDVTYEEAKQFAEEN-------GLLFLEASAKTGENV 154 (166)
T ss_dssp CGGGCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred chhhcccHHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 85432111 1111122111 236788999999998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.56 E-value=1.3e-14 Score=130.60 Aligned_cols=145 Identities=20% Similarity=0.236 Sum_probs=91.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|.+..+. ....||...... +..+.
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~---~~~~~T~~~~~~~~~~~~--------------------------------- 46 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFN---EDMIPTVGFNMRKITKGN--------------------------------- 46 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCSEEEEEEEETT---------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC---Ccccccceeeeeeeeeee---------------------------------
Confidence 57999999999999999999998752 223344332211 11110
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
..+.++||||... +......+...+|++++|+|+.+.........++..+. ..+.|+++|+||.
T Consensus 47 -~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~ 114 (164)
T d1zd9a1 47 -VTIKLWDIGGQPR-----------FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKR 114 (164)
T ss_dssp -EEEEEEEECCSHH-----------HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECT
T ss_pred -EEEEEeecccccc-----------ccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEecc
Confidence 3488999999643 44556677899999999999985222222233333332 2468999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+... .. .+... .....+.+.+||++|.|+
T Consensus 115 Dl~~~~~~~~i~~-~~-~~~~~-~~~~~~~~e~Sa~~g~gv 152 (164)
T d1zd9a1 115 DLPGALDEKELIE-KM-NLSAI-QDREICCYSISCKEKDNI 152 (164)
T ss_dssp TSTTCCCHHHHHH-HT-TGGGC-CSSCEEEEECCTTTCTTH
T ss_pred ccchhhhHHHHHH-HH-HHHHH-HhCCCEEEEEeCcCCcCH
Confidence 9875322222211 11 11111 233457789999999988
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.1e-15 Score=135.37 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=89.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEE-EEeCCCccccCCCCcccccccccccccceeEEecC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVN 132 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~ 132 (551)
...+|+|+|.+|||||||+++|++..+. ....+|.. .... +..+. ..
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~---~~~~~t~~~~~~~~~~~~~-----------------~~----------- 53 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFV---SDYDPTIEDSYTKICSVDG-----------------IP----------- 53 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC---SSCCTTCCEEEEEEEEETT-----------------EE-----------
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCCCC---cccccccccceeeEeccCC-----------------ee-----------
Confidence 3468999999999999999999988752 22222322 2111 11110 00
Q ss_pred CCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEE
Q psy11743 133 SPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVL 208 (551)
Q Consensus 133 ~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVl 208 (551)
-.+.++||+|... +......++..+|++++|+|..+.........+...+. ..+.|+++|.
T Consensus 54 ----~~l~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvg 118 (173)
T d2fn4a1 54 ----ARLDILDTAGQEE-----------FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 118 (173)
T ss_dssp ----EEEEEEECCCTTT-----------TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred ----eeeeccccccccc-----------cccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEE
Confidence 2478999999875 22334566789999999999985222222234433332 3567999999
Q ss_pred cCCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+...... .+......... ..+.+.+||++|.|+
T Consensus 119 nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~e~Sak~g~gv 156 (173)
T d2fn4a1 119 NKADLESQRQVPRSEASAFGASH-------HVAYFEASAKLRLNV 156 (173)
T ss_dssp ECGGGGGGCCSCHHHHHHHHHHT-------TCEEEECBTTTTBSH
T ss_pred EeechhhccccchhhhhHHHHhc-------CCEEEEEeCCCCcCH
Confidence 99998643211 11111111111 235678999999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=1.7e-14 Score=148.56 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=79.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCC---CCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPG---IHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~---~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
....|+|+|++|||||||+|+|+|..... ..++..+||.......+..
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~----------------------------- 105 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN----------------------------- 105 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-----------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-----------------------------
Confidence 35789999999999999999999965321 1222222332222211110
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHH-HHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcC
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGV-LEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNK 210 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~-~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK 210 (551)
...+++|||||+...... .... .......+|++|++.|. .++..+.+++..+++.++|+++|+||
T Consensus 106 ----~~~~~l~DtPG~~~~~~~-------~~~~~~~~~~~~~d~~l~~~~~---~~~~~d~~l~~~l~~~~k~~~~V~nK 171 (400)
T d1tq4a_ 106 ----IPNVVFWDLPGIGSTNFP-------PDTYLEKMKFYEYDFFIIISAT---RFKKNDIDIAKAISMMKKEFYFVRTK 171 (400)
T ss_dssp ----CTTEEEEECCCGGGSSCC-------HHHHHHHTTGGGCSEEEEEESS---CCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ----CCeEEEEeCCCccccccc-------HHHHHHHhhhhcceEEEEecCC---CCCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 145899999999763221 1111 22245789999888875 46888889999999999999999999
Q ss_pred CCCC
Q psy11743 211 ADMV 214 (551)
Q Consensus 211 ~Dl~ 214 (551)
+|..
T Consensus 172 ~D~~ 175 (400)
T d1tq4a_ 172 VDSD 175 (400)
T ss_dssp HHHH
T ss_pred cccc
Confidence 9964
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.4e-15 Score=136.89 Aligned_cols=146 Identities=15% Similarity=0.189 Sum_probs=86.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+|+|.+|||||||+|++++.++.... .+..+.......... .+..
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~-~~~~~~~~~~~~~~~----------------~~~~--------------- 51 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVNI----------------DGKQ--------------- 51 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEE----------------TTEE---------------
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCc-ccceeeccceeeeee----------------eeeE---------------
Confidence 57999999999999999999998763222 121222211111100 0000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||+|... +......+...+|++++|+|..+.........++..+. ..+.|+++|.||+|+
T Consensus 52 ~~~~i~d~~g~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~ 120 (173)
T d2a5ja1 52 IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 120 (173)
T ss_dssp EEEEEECCTTGGG-----------TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEeecccCccc-----------hhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCch
Confidence 3488999999754 22334556789999999999986322222234443333 346899999999997
Q ss_pred CCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
........ ......... ..+.+.+||++|.|+
T Consensus 121 ~~~~~~~~~~~~~~a~~~-------~~~~~e~Sa~tg~~V 153 (173)
T d2a5ja1 121 ESRRDVKREEGEAFAREH-------GLIFMETSAKTACNV 153 (173)
T ss_dssp GGGCCSCHHHHHHHHHHH-------TCEEEEECTTTCTTH
T ss_pred hhhhhhHHHHHHHHHHHc-------CCEEEEecCCCCCCH
Confidence 53221111 111111111 236688999999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=4e-15 Score=138.05 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=89.4
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
++-.++|+|+|.+|||||||+|+|++..+.. ...|..++.... .+.... ..
T Consensus 3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~-----------------~~---------- 54 (194)
T d2bcgy1 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDG-----------------KT---------- 54 (194)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETT-----------------EE----------
T ss_pred CCEEEEEEEECCCCcCHHHHHHHHhhCCCCC-CcCCccceeEEEEEEEEee-----------------EE----------
Confidence 3445889999999999999999999877532 222222222211 111111 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hCCCCcEEEEE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RGHDDKIRIVL 208 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~~~~~vilVl 208 (551)
..+.+|||||... +...+..++..+|++|+|+|+++.........+...+ .....|+++|.
T Consensus 55 -----~~l~i~Dt~G~e~-----------~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~ 118 (194)
T d2bcgy1 55 -----VKLQIWDTAGQER-----------FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 118 (194)
T ss_dssp -----EEEEEECCTTTTT-----------TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -----EEEEEEECCCchh-----------hHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEE
Confidence 3488999999765 2222334568999999999998522222222233323 24567999999
Q ss_pred cCCCCCCHHHHHHH-HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRV-YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~-~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+....... ....... ...+.+.+||++|.|+
T Consensus 119 nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~e~SAk~g~gi 156 (194)
T d2bcgy1 119 NKCDLKDKRVVEYDVAKEFADA-------NKMPFLETSALDSTNV 156 (194)
T ss_dssp ECTTCTTTCCSCHHHHHHHHHH-------TTCCEEECCTTTCTTH
T ss_pred eccccccccchhHHHHhhhhhc-------cCcceEEEecCcCccH
Confidence 99999763221111 1111111 1235678999999998
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.5e-14 Score=131.10 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=87.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+.+|+|+|.+|||||||++++++..+. ....||.......... +. +.
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~---~~~~~t~~~~~~~~~~-----~~----------~~-------------- 51 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFV---TDYDPTIEDSYTKQCV-----ID----------DR-------------- 51 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCC---SSCCTTCCEEEEEEEE-----ET----------TE--------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC---cccCcccccceeeeee-----ec----------cc--------------
Confidence 4578999999999999999999998752 2233343322111000 00 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH----HhCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA----LRGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~----l~~~~~~vilVlNK 210 (551)
...+.++||+|... +......++..+|++++|+|..++........+... ......|+++|.||
T Consensus 52 -~~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK 119 (171)
T d2erya1 52 -AARLDILDTAGQEE-----------FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119 (171)
T ss_dssp -EEEEEEEECC---------------CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEEC
T ss_pred -cccccccccccccc-----------ccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEec
Confidence 02478999999875 344556777899999999999852222222333322 22456889999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+. +......... ..+.+.+||++|.|+
T Consensus 120 ~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e~Sak~~~~i 155 (171)
T d2erya1 120 ADLDHQRQVTQEEGQQLARQL-------KVTYMEASAKIRMNV 155 (171)
T ss_dssp TTCTTSCSSCHHHHHHHHHHT-------TCEEEECBTTTTBSH
T ss_pred cchhhhccchHHHHHHHHHHc-------CCEEEEEcCCCCcCH
Confidence 9986432111 1111122112 235678999999988
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.8e-15 Score=133.38 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=89.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+..+|+++|.+|||||||+|+|++..+. ....+|.......... +.+ .
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~---~~~~~t~~~~~~~~~~-----~~~----------~-------------- 49 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFI---EKYDPTIEDFYRKEIE-----VDS----------S-------------- 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC---SCCCTTCCEEEEEEEE-----ETT----------E--------------
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCC---CccCCceeeeeeeeee-----cCc----------c--------------
Confidence 4578999999999999999999998753 2222332221111000 000 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
...+.++||+|... +......+...+|++++|+|..+.........+...+. ..+.|+++|.||
T Consensus 50 -~~~l~~~d~~g~~~-----------~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK 117 (167)
T d1kaoa_ 50 -PSVLEILDTAGTEQ-----------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp -EEEEEEEECCCTTC-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred -eEeeccccCCCccc-----------cccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEc
Confidence 03478999999765 35556677899999999999985222222234433332 246789999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.............+ .... ..+.+.+||++|.|+
T Consensus 118 ~Dl~~~~~~~~~~~~~~-~~~~-----~~~~~e~Sak~g~~i 153 (167)
T d1kaoa_ 118 VDLESEREVSSSEGRAL-AEEW-----GCPFMETSAKSKTMV 153 (167)
T ss_dssp GGGGGGCCSCHHHHHHH-HHHH-----TSCEEEECTTCHHHH
T ss_pred cchhhcccchHHHHHHH-HHHc-----CCeEEEECCCCCcCH
Confidence 99864321111111111 1111 125678999998887
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.54 E-value=6.9e-15 Score=133.71 Aligned_cols=147 Identities=17% Similarity=0.163 Sum_probs=90.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|||||||+|+|++.... ...+|+......... ..
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~~----~~~~t~~~~~~~~~~----------------------~~--------- 55 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVETVTY----------------------KN--------- 55 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCCE----EEEEETTEEEEEEEE----------------------TT---------
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCC----CccceeeeeEEEeec----------------------cc---------
Confidence 3578999999999999999999876642 122222221111100 00
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH-Hh---CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA-LR---GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~-l~---~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+...........++.. +. ....|+++|+||
T Consensus 56 --~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK 122 (173)
T d1e0sa_ 56 --VKFNVWDVGGQDK-----------IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 122 (173)
T ss_dssp --EEEEEEEESCCGG-----------GHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred --eeeEEecCCCcch-----------hhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeec
Confidence 3488999999764 344555678899999999999852222222233333 32 246899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.....++. .. ..+... .....+++.+||++|.|+
T Consensus 123 ~Dl~~~~~~~~i~-~~-~~~~~~-~~~~~~~~e~SA~tg~gv 161 (173)
T d1e0sa_ 123 QDLPDAMKPHEIQ-EK-LGLTRI-RDRNWYVQPSCATSGDGL 161 (173)
T ss_dssp TTSTTCCCHHHHH-HH-TTGGGC-CSSCEEEEECBTTTTBTH
T ss_pred ccccccccHHHHH-HH-HHHHHH-HhCCCEEEEeeCCCCcCH
Confidence 9996532211111 11 112222 222346778999999998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.6e-14 Score=130.44 Aligned_cols=147 Identities=15% Similarity=0.160 Sum_probs=90.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..+|+++|.+|||||||++++++..+.. ...||.. .+......+ +
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~---~~~~t~~~~~~~~~~~~----------------~-------------- 48 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE---KYDPTIEDSYRKQVEVD----------------C-------------- 48 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC---SCCCCSEEEEEEEEESS----------------S--------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC---ccCCccccccceeEEee----------------e--------------
Confidence 45789999999999999999999988632 2222221 111110100 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
-...+.++|++|... +......++..+|++++|+|+.+.........+...+. ..+.|+++|.|
T Consensus 49 -~~~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgn 116 (167)
T d1c1ya_ 49 -QQCMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116 (167)
T ss_dssp -CEEEEEEEEECSSCS-----------STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEE
T ss_pred -eEEEeccccccCccc-----------ccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 003488999999875 34455667899999999999986322222234444332 24678999999
Q ss_pred CCCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+........ ........ ....+.+.+||++|.|+
T Consensus 117 K~Dl~~~~~~~~~~~~~~~~~------~~~~~~~e~Sak~g~gv 154 (167)
T d1c1ya_ 117 KCDLEDERVVGKEQGQNLARQ------WCNCAFLESSAKSKINV 154 (167)
T ss_dssp CTTCGGGCCSCHHHHHHHHHH------TTSCEEEECBTTTTBSH
T ss_pred ecCcccccccchhHHHHHHHH------hCCCEEEEEcCCCCcCH
Confidence 999875321111 11111111 12346678999999998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=6.6e-15 Score=133.06 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=89.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+|+|.+|||||||+|+|++..+. ....+|...... .... .+.
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~---~~~~~t~~~~~~~~~~~----------------~~~------------- 50 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFD---PNINPTIGASFMTKTVQ----------------YQN------------- 50 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC---TTCCCCCSEEEEEEEEE----------------ETT-------------
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCC---ccccccccccccccccc----------------ccc-------------
Confidence 4578999999999999999999998763 222233222111 1100 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hCCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RGHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~~~~~vilVlNK 210 (551)
....+.++||+|... +......++..+|++++|+|..+.........+...+ .....|+++|.||
T Consensus 51 -~~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK 118 (167)
T d1z0ja1 51 -ELHKFLIWDTAGLER-----------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 118 (167)
T ss_dssp -EEEEEEEEEECCSGG-----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred -cccceeeeecCCchh-----------hhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEeccc
Confidence 003477999999765 3334556788999999999998522222222333222 2457889999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+..... +......... ..+.+.+||++|.|+
T Consensus 119 ~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e~SAk~~~nV 154 (167)
T d1z0ja1 119 CDLTDVREVMERDAKDYADSI-------HAIFVETSAKNAINI 154 (167)
T ss_dssp TTCGGGCCSCHHHHHHHHHHT-------TCEEEECBTTTTBSH
T ss_pred chhccccchhHHHHHHHHHHc-------CCEEEEEecCCCCCH
Confidence 9996432211 1111112111 235688999999988
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.53 E-value=2e-14 Score=130.03 Aligned_cols=144 Identities=18% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE--EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA--VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~--i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..+|+|+|.+|||||||+|++++..+. ....||...... +..+ + .
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f~---~~~~~T~~~~~~~~~~~~-------~----------~------------- 50 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEFV---EDYEPTKADSYRKKVVLD-------G----------E------------- 50 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---SCCCTTCCEEEEEEEEET-------T----------E-------------
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCC---cccCCccccccccccccc-------c----------c-------------
Confidence 358999999999999999999987752 223334322111 1010 0 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlN 209 (551)
...+.++||+|... +......++..+|++++|+|..+.........++..+. ..+.|+++|.|
T Consensus 51 --~~~l~i~d~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgn 117 (168)
T d1u8za_ 51 --EVQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117 (168)
T ss_dssp --EEEEEEEECCC--------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred --cccccccccccccc-----------hhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEec
Confidence 03478999999865 45556677899999999999986222222234444433 35789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.....+ .+........++ .+.+.+||++|.|+
T Consensus 118 K~Dl~~~~~v~~~~~~~~~~~~~-------~~~~e~Sak~g~gv 154 (168)
T d1u8za_ 118 KSDLEDKRQVSVEEAKNRADQWN-------VNYVETSAKTRANV 154 (168)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHHT-------CEEEECCTTTCTTH
T ss_pred cccccccccccHHHHHHHHHHcC-------CeEEEEcCCCCcCH
Confidence 9998543211 011111221122 35678999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.3e-14 Score=132.34 Aligned_cols=145 Identities=15% Similarity=0.167 Sum_probs=88.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|++..+.. ...+.++..... .+..+. .
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~--------------- 54 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDG-----------------N--------------- 54 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETT-----------------E---------------
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCC-ccccceeecceeEEEEEec-----------------c---------------
Confidence 579999999999999999999987521 112222222111 111111 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlNK~ 211 (551)
...+.++||||... +......++..+|++++|+|..+.........++..+.+ ...|++++.||.
T Consensus 55 ~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~ 123 (177)
T d1x3sa1 55 KAKLAIWDTAGQER-----------FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123 (177)
T ss_dssp EEEEEEEEECSSGG-----------GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred ccEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecc
Confidence 03489999999754 222345677899999999998752222223445554442 357789999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.................. ..+.+.+||++|.|+
T Consensus 124 d~~~~~v~~~~~~~~~~~~-------~~~~~e~Sa~tg~gv 157 (177)
T d1x3sa1 124 DKENREVDRNEGLKFARKH-------SMLFIEASAKTCDGV 157 (177)
T ss_dssp TSSSCCSCHHHHHHHHHHT-------TCEEEECCTTTCTTH
T ss_pred ccccccccHHHHHHHHHHC-------CCEEEEEeCCCCCCH
Confidence 9875321111112222111 236788999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.52 E-value=2.8e-14 Score=138.32 Aligned_cols=124 Identities=14% Similarity=0.198 Sum_probs=89.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+|+|++|||||||+|+|+|++.+.++..++.|++......... +
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~----------------------g---------- 79 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA----------------------G---------- 79 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET----------------------T----------
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEec----------------------c----------
Confidence 47899999999999999999999998877777777766654322110 1
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHHHhC-----CCCcEEEEE
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEALRG-----HDDKIRIVL 208 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~~vilVl 208 (551)
..+.+|||||+.++... ..+....+..+. ...|++++|+++....++..+...+..+.. ..+++++|+
T Consensus 80 -~~i~viDTPGl~~~~~~----~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~ 154 (257)
T d1h65a_ 80 -FTLNIIDTPGLIEGGYI----NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 154 (257)
T ss_dssp -EEEEEEECCCSEETTEE----CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred -EEEEEEeeecccCCcch----HHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEE
Confidence 45999999999864321 111222333222 567899999998765688888777776653 246799999
Q ss_pred cCCCCCCH
Q psy11743 209 NKADMVDH 216 (551)
Q Consensus 209 NK~Dl~~~ 216 (551)
||+|...+
T Consensus 155 t~~D~~~~ 162 (257)
T d1h65a_ 155 THAQFSPP 162 (257)
T ss_dssp ECCSCCCG
T ss_pred ECcccCCc
Confidence 99999864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.52 E-value=6.8e-14 Score=124.33 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=89.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+|+|++|||||||+|+|++.++.. ..+... ...... ... .
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~--~~~~~~-~~~~~~-~~~----------------------~----------- 43 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG-FNVETV-EYK----------------------N----------- 43 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCCCSS-CCEEEE-ECS----------------------S-----------
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc--ccccee-eEEEEE-eee----------------------e-----------
Confidence 379999999999999999999988632 111111 111110 000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH-HHHh---CCCCcEEEEEcCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI-EALR---GHDDKIRIVLNKAD 212 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l-~~l~---~~~~~vilVlNK~D 212 (551)
..+.++|+||... +..........++++++++|..+.........+. +.+. ....|+++|.||.|
T Consensus 44 ~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d 112 (160)
T d1r8sa_ 44 ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112 (160)
T ss_dssp CEEEEEECCCCGG-----------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEEecCCCccc-----------chhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccc
Confidence 3488999999764 3455667789999999999998532222222222 2222 24678999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.....++..... +. .......+++.+||++|.|+
T Consensus 113 ~~~~~~~~~i~~~~~--~~-~~~~~~~~~~~~SAktg~gi 149 (160)
T d1r8sa_ 113 LPNAMNAAEITDKLG--LH-SLRHRNWYIQATCATSGDGL 149 (160)
T ss_dssp STTCCCHHHHHHHTT--GG-GCSSCCEEEEECBTTTTBTH
T ss_pred ccccccHHHHHHHHH--HH-HHhhCCCEEEEeECCCCCCH
Confidence 875432222211111 11 12334557889999999998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.51 E-value=9.6e-15 Score=133.82 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=86.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
...+|+++|.+|||||||+++|.+..... ..||..... .+.+. +
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~----~~~t~~~~~~~~~~~-----------------------~-------- 60 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEVVT----TKPTIGFNVETLSYK-----------------------N-------- 60 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEE----ECSSTTCCEEEEEET-----------------------T--------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc----cccccceEEEEEeeC-----------------------C--------
Confidence 46899999999999999999998776421 112221111 11110 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH-h---CCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL-R---GHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~~vilVlN 209 (551)
..+.++||||...- ......+...+|++++|+|+.+.........++..+ . ..+.|+++|+|
T Consensus 61 ---~~~~i~D~~g~~~~-----------~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~N 126 (182)
T d1moza_ 61 ---LKLNVWDLGGQTSI-----------RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 126 (182)
T ss_dssp ---EEEEEEEEC----C-----------CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEE
T ss_pred ---EEEEEEeccccccc-----------chhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEE
Confidence 34889999998651 222334567999999999998633333334444333 2 23689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.....++ ...+ .+... .....+++.+||++|.|+
T Consensus 127 K~Dl~~~~~~~~i-~~~~-~~~~~-~~~~~~~~e~SA~~g~gv 166 (182)
T d1moza_ 127 KQDQPGALSASEV-SKEL-NLVEL-KDRSWSIVASSAIKGEGI 166 (182)
T ss_dssp CTTSTTCCCHHHH-HHHT-TTTTC-CSSCEEEEEEBGGGTBTH
T ss_pred eeccccccCHHHH-HHHH-HHHHH-hhCCCEEEEEECCCCCCH
Confidence 9999642111111 1111 11121 222346788999999998
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.1e-14 Score=130.08 Aligned_cols=148 Identities=13% Similarity=0.125 Sum_probs=89.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+++|.+|||||||+++|++..+. ....+|........... .+..
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~---~~~~~t~~~~~~~~~~~---------------~~~~-------------- 53 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFH---EFQESTIGAAFLTQTVC---------------LDDT-------------- 53 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---TTCCCCSSEEEEEEEEE---------------ETTE--------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC---cccccccccccccceee---------------ccce--------------
Confidence 368999999999999999999988753 22222222211100000 0000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~D 212 (551)
...+.++||||... +......++..+|++++|+|..+.........+...+. ..+.|+++|.||+|
T Consensus 54 ~~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~D 122 (170)
T d1r2qa_ 54 TVKFEIWDTAGQER-----------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEeccCCCchh-----------hhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccc
Confidence 03488999999764 44455667899999999999885222222333433332 34678999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.....+.......+. . ....+.+.+||++|.|+
T Consensus 123 l~~~~~v~~e~~~~~~-~-----~~~~~~~e~SAk~g~~V 156 (170)
T d1r2qa_ 123 LANKRAVDFQEAQSYA-D-----DNSLLFMETSAKTSMNV 156 (170)
T ss_dssp GGGGCCSCHHHHHHHH-H-----HTTCEEEECCTTTCTTH
T ss_pred ccccccccHHHHHHHH-H-----hcCCEEEEeeCCCCCCH
Confidence 8643221111111111 1 11236788999999998
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.4e-14 Score=131.18 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=84.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..++|+++|.+|||||||++++++.++..-...+....+.... +.... ..
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~------------ 55 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG-----------------VK------------ 55 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETT-----------------EE------------
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecC-----------------cE------------
Confidence 3478999999999999999999998753211112111122111 11110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hCCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RGHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~~~~~vilVlNK 210 (551)
-.+.++||||... +......+...+|++++|+|..+.........+...+ .....|+++|.||
T Consensus 56 ---~~l~i~Dt~G~e~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k 121 (170)
T d2g6ba1 56 ---VKLQMWDTAGQER-----------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121 (170)
T ss_dssp ---EEEEEEECCCC-------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ---EEEEEEECCCchh-----------hHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEee
Confidence 2488999999765 3334445668999999999998522111112222222 2456789999999
Q ss_pred CCCCCHHHHHH-HHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMR-VYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~-~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+.. ......... ..+.+.+||++|.|+
T Consensus 122 ~d~~~~~~v~~~~~~~~~~~~-------~~~~~e~Sak~g~gi 157 (170)
T d2g6ba1 122 VDSAHERVVKREDGEKLAKEY-------GLPFMETSAKTGLNV 157 (170)
T ss_dssp CSTTSCCCSCHHHHHHHHHHH-------TCCEEECCTTTCTTH
T ss_pred echhhcccccHHHHHHHHHHc-------CCEEEEEeCCCCcCH
Confidence 99876422111 111111111 236788999999988
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.6e-14 Score=132.62 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=86.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+|+|.+|||||||+|+|++.++. ....||........... . .+. .
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~---~~~~~t~~~~~~~~~~~----~----------~~~---------------~ 50 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVM----V----------DDR---------------L 50 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSEEEEEEEEE----S----------SSC---------------E
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC---CCcCCccceeeeeeeee----e----------CCc---------------e
Confidence 57999999999999999999998753 22223322211110000 0 000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-------CCCCcEEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-------GHDDKIRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~~vilVlN 209 (551)
..+.++||||...... .....+..+|++++++|..+.........++..+. ..+.|+++|+|
T Consensus 51 ~~~~~~d~~g~~~~~~-----------~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~n 119 (184)
T d1vg8a_ 51 VTMQIWDTAGQERFQS-----------LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 119 (184)
T ss_dssp EEEEEEEECSSGGGSC-----------SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred EEEEeeecCCcccccc-----------cccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEE
Confidence 2478999999765221 12234578999999999975211122233443332 12578999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+.+...+........ ....+.+.+||++|.|+
T Consensus 120 K~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sak~~~gI 156 (184)
T d1vg8a_ 120 KIDLENRQVATKRAQAWCYS------KNNIPYFETSAKEAINV 156 (184)
T ss_dssp CTTSSCCCSCHHHHHHHHHH------TTSCCEEECBTTTTBSH
T ss_pred eecccccchhHHHHHHHHHH------hcCCeEEEEcCCCCcCH
Confidence 99986532221111222211 22346788999999988
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=1.9e-14 Score=129.83 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=85.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+|+|++..+.. ...|..+.+.......-+ |. .
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~-~~~~t~~~~~~~~~i~~~----------------~~---------------~ 50 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDIN----------------GK---------------K 50 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESS----------------SC---------------E
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCC-ccCCccceeEEEEEEEEC----------------CE---------------E
Confidence 579999999999999999999987531 111212222221111100 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH---HhCCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA---LRGHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~---l~~~~~~vilVlNK~Dl 213 (551)
..+.++||||... +......+++.+|++++|+|..+.........+... ......+++++.||.|+
T Consensus 51 ~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~ 119 (166)
T d1g16a_ 51 VKLQIWDTAGQER-----------FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 119 (166)
T ss_dssp EEEEEECCTTGGG-----------TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEECCCchh-----------hHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhh
Confidence 2478899999653 222334567999999999999862211111222222 22456789999999998
Q ss_pred CCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.....+......... ..+.+.+||++|.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v 151 (166)
T d1g16a_ 120 ETRVVTADQGEALAKEL-------GIPFIESSAKNDDNV 151 (166)
T ss_dssp TTCCSCHHHHHHHHHHH-------TCCEEECBTTTTBSH
T ss_pred hhhhhhHHHHHHHHHhc-------CCeEEEECCCCCCCH
Confidence 75422212222222111 236788999999998
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.1e-13 Score=125.14 Aligned_cols=143 Identities=18% Similarity=0.186 Sum_probs=85.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-E-EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-I-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..+|+++|.+|||||||++++++..+. ....||.... . .+..+ |.
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~---~~~~pTi~~~~~~~~~~~-----------------~~------------- 48 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFI---WEYDPTLESTYRHQATID-----------------DE------------- 48 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCC---SCCCTTCCEEEEEEEEET-----------------TE-------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC---CccCCceecccccccccc-----------------cc-------------
Confidence 368999999999999999999998752 2333443221 1 11110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlN 209 (551)
...+.++||+|... + .....+...+|++++|+|..+.........+.... ...+.|+++|.|
T Consensus 49 --~~~l~i~D~~g~~~-----------~-~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgn 114 (168)
T d2atva1 49 --VVSMEILDTAGQED-----------T-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 114 (168)
T ss_dssp --EEEEEEEECCCCCC-----------C-HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred --ceEEEEeecccccc-----------c-ccchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeecc
Confidence 03488999999864 1 12345678899999999998622111212222222 234789999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCC-C
Q psy11743 210 KADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQP-L 252 (551)
Q Consensus 210 K~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~-~ 252 (551)
|+|+.+...+ .+.........+ .+.+.+||++|.+ +
T Consensus 115 K~Dl~~~r~V~~~e~~~~a~~~~-------~~~~e~Saktg~gnV 152 (168)
T d2atva1 115 KADLDHSRQVSTEEGEKLATELA-------CAFYECSACTGEGNI 152 (168)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHHT-------SEEEECCTTTCTTCH
T ss_pred chhhhhhccCcHHHHHHHHHHhC-------CeEEEEccccCCcCH
Confidence 9998543211 011111111122 2567899999874 6
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.6e-14 Score=129.05 Aligned_cols=146 Identities=19% Similarity=0.201 Sum_probs=83.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
++|+|+|.+|||||||+++|++..+. ....||........... .+. ..
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~---~~~~~t~~~~~~~~~~~---------------~~~--------------~~ 51 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFN---DKHITTLGASFLTKKLN---------------IGG--------------KR 51 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCC---SSCCCCCSCEEEEEEEE---------------SSS--------------CE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC---cccccccccchheeeec---------------cCC--------------cc
Confidence 68999999999999999999998763 22233322111110000 000 00
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK~Dl 213 (551)
..+.++||+|... +......++..+|++++|+|.++.........++..+. ....|+++|.||+|+
T Consensus 52 ~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 120 (167)
T d1z08a1 52 VNLAIWDTAGQER-----------FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 120 (167)
T ss_dssp EEEEEEECCCC------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred ceeeeeccCCcce-----------ecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeecccccc
Confidence 3478999999865 22223345689999999999985221122233333322 346788999999998
Q ss_pred CCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
....++. +......... ..+.+.+||++|.|+
T Consensus 121 ~~~~~v~~~e~~~~a~~~-------~~~~~e~Sak~~~~v 153 (167)
T d1z08a1 121 EKERHVSIQEAESYAESV-------GAKHYHTSAKQNKGI 153 (167)
T ss_dssp GGGCCSCHHHHHHHHHHT-------TCEEEEEBTTTTBSH
T ss_pred ccccccchHHHHHHHHHc-------CCeEEEEecCCCcCH
Confidence 6432210 1111111111 235678999999998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=9.6e-14 Score=129.49 Aligned_cols=116 Identities=20% Similarity=0.325 Sum_probs=77.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..|+|+|+|.+|||||||+|+|++.++. +.+|++....... ++ +
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~-----~~tt~~~~~~~~~-----------------~~-----~--------- 45 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAAD-----------------YD-----G--------- 45 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCC-----CBCCCSSCEEETT-----------------GG-----G---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-----CeEEecceEEEEE-----------------eC-----C---------
Confidence 3589999999999999999999998753 2233333222110 11 1
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-ChHHHHH-------HHHHhCCCCcEEE
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDEFRRS-------IEALRGHDDKIRI 206 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-~~~~~~~-------l~~l~~~~~~vil 206 (551)
..+.++||||..... ..+.......+..++.+++++|+..... .....++ +..+...+.|+++
T Consensus 46 --~~~~l~D~~g~~~~~-------~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piii 116 (209)
T d1nrjb_ 46 --SGVTLVDFPGHVKLR-------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116 (209)
T ss_dssp --SSCEEEECCCCGGGT-------HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred --eEEEEEecccccchh-------hHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEE
Confidence 468999999987521 1245556667788899999999874221 2222222 2233456899999
Q ss_pred EEcCCCCCC
Q psy11743 207 VLNKADMVD 215 (551)
Q Consensus 207 VlNK~Dl~~ 215 (551)
|+||+|+.+
T Consensus 117 v~NK~D~~~ 125 (209)
T d1nrjb_ 117 ACNKSELFT 125 (209)
T ss_dssp EEECTTSTT
T ss_pred EEEeecccc
Confidence 999999975
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.9e-14 Score=128.64 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=85.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE--EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+|+|.+|||||||+|+|++..+. ....||..... .+..+ + .
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~---~~~~~t~~~~~~~~~~~~-------~----------~-------------- 50 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFV---DSYDPTIENTFTKLITVN-------G----------Q-------------- 50 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC---SCCCSSCCEEEEEEEEET-------T----------E--------------
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC---cccCcceecccceEEecC-------c----------E--------------
Confidence 58999999999999999999987752 22334433221 11110 0 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlNK 210 (551)
...+.++||+|...... ....++..+|++++|+|..+.........+...+ ...+.|+++|.||
T Consensus 51 -~~~l~i~d~~g~~~~~~-----------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK 118 (167)
T d1xtqa1 51 -EYHLQLVDTAGQDEYSI-----------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 118 (167)
T ss_dssp -EEEEEEEECCCCCTTCC-----------CCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEEC
T ss_pred -EEEeeeccccccccccc-----------ccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccc
Confidence 02478999999875221 1223457899999999998622222223333333 2456899999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.....+ .+.........+ .+.+.+||++|.|+
T Consensus 119 ~Dl~~~r~v~~~~~~~~a~~~~-------~~~~e~Sak~~~~v 154 (167)
T d1xtqa1 119 KDLHMERVISYEEGKALAESWN-------AAFLESSAKENQTA 154 (167)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHT-------CEEEECCTTCHHHH
T ss_pred cccccccchhHHHHHHHHHHcC-------CEEEEEecCCCCCH
Confidence 998643211 011111111121 25577999998887
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.4e-14 Score=128.74 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=88.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+|+|.+|||||||+++|++..+. ....||........... .+. .
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~---~~~~~t~~~~~~~~~~~---------------~~~---------------~ 49 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFP---EVYVPTVFENYVADIEV---------------DGK---------------Q 49 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEEE---------------TTE---------------E
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC---CCcCCceeeeccccccc---------------ccc---------------c
Confidence 47999999999999999999998753 22333432221110000 000 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHH-HHHHHHHh--CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-RRSIEALR--GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~-~~~l~~l~--~~~~~vilVlNK~Dl 213 (551)
..+.++||+|... +......++..+|++++|+|.++....... ..+...+. ..+.|+++|.||+|+
T Consensus 50 ~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl 118 (177)
T d1kmqa_ 50 VELALWDTAGLED-----------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 118 (177)
T ss_dssp EEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGG
T ss_pred eeeeccccCccch-----------hcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccc
Confidence 3488999999764 333344567899999999999852111111 12233333 246899999999999
Q ss_pred CCHHHHHHHHHH---------HHHHcccccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGA---------LMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.+.....+.... ....+.. .....+.+.+||++|.|+
T Consensus 119 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~--~~~~~~~~E~SAkt~~gi 164 (177)
T d1kmqa_ 119 RNDEHTRRELAKMKQEPVKPEEGRDMAN--RIGAFGYMECSAKTKDGV 164 (177)
T ss_dssp TTCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred cchhhHHHHHHHhhcccccHHHHHHHHH--HcCCcEEEEecCCCCcCH
Confidence 865432211100 0000000 112235677999999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=7.3e-14 Score=126.92 Aligned_cols=148 Identities=17% Similarity=0.086 Sum_probs=86.4
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+|+|.+|||||||+|+|++..+. ....+|+.......... + .+.
T Consensus 6 ~~KI~vvG~~~vGKSSli~~~~~~~~~---~~~~~t~~~~~~~~~~~----~----------~~~--------------- 53 (174)
T d1wmsa_ 6 LFKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLNKDLE----V----------DGH--------------- 53 (174)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC---C----CCSEEEEEEEEE----E----------TTE---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC---Cccccceeeeeeeeeee----e----------cCc---------------
Confidence 468999999999999999999987752 11222222211110000 0 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh-------CCCCcEEEEE
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR-------GHDDKIRIVL 208 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~~vilVl 208 (551)
...+.++||+|... ........+..+|++++++|............+...+. ..+.|+++|.
T Consensus 54 ~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVg 122 (174)
T d1wmsa_ 54 FVTMQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122 (174)
T ss_dssp EEEEEEEECCCCGG-----------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred eeeEeeecccCcce-----------ehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEec
Confidence 02478999999754 34445566789999999999985221222233333332 1357899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.....+......... ...+.+.+||++|.|+
T Consensus 123 nK~Dl~~~~v~~~~~~~~~~~~------~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 123 NKIDISERQVSTEEAQAWCRDN------GDYPYFETSAKDATNV 160 (174)
T ss_dssp ECTTCSSCSSCHHHHHHHHHHT------TCCCEEECCTTTCTTH
T ss_pred cccchhhccCcHHHHHHHHHHc------CCCeEEEEcCCCCcCH
Confidence 9999865311111111111111 1235678999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.6e-14 Score=132.83 Aligned_cols=152 Identities=19% Similarity=0.229 Sum_probs=87.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-E--EEEEeCCCccccCCCCcccccccccccccceeEEec
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-F--IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLV 131 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~--~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~ 131 (551)
...+|+|+|.+|||||||+|+|++..+.. ...+|... + ..+.+.... +. + ..
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~~-------~~-----~----------~~ 58 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNP---KFITTVGIDFREKRVVYNAQG-------PN-----G----------SS 58 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC---EEEEEEEEEEEEEEEEEEC-----------------------------
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCC---ccCCcccceeeEEEEEEeccc-------cc-----c----------cc
Confidence 34789999999999999999999877521 11111111 0 011111000 00 0 00
Q ss_pred CCCCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---C----CCCcE
Q psy11743 132 NSPVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---G----HDDKI 204 (551)
Q Consensus 132 ~~~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~----~~~~v 204 (551)
.......+.++||||... +......++.++|++++|+|+++. .....+..++. . ...|+
T Consensus 59 ~~~~~~~~~i~dt~G~e~-----------~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~i 124 (186)
T d2f7sa1 59 GKAFKVHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLMFDLTSQ---QSFLNVRNWMSQLQANAYCENPDI 124 (186)
T ss_dssp CCEEEEEEEEEEEESHHH-----------HHHHHHHHHTTCCEEEEEEETTCH---HHHHHHHHHHHTCCCCCTTTCCEE
T ss_pred cccceEEeccccCCcchh-----------hHHHHHHHHhcCCEEEEEEecccc---ccceeeeeccchhhhhccCCCceE
Confidence 000013488999999643 566677788999999999999852 22223333332 1 24578
Q ss_pred EEEEcCCCCCCHHHHHHH-HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 205 RIVLNKADMVDHQQLMRV-YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 205 ilVlNK~Dl~~~~~~~~~-~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
++|.||+|+....++... ........ ..+.+.+||++|.|+
T Consensus 125 ilv~nK~Dl~~~~~v~~~e~~~~~~~~-------~~~~~e~Sak~~~~i 166 (186)
T d2f7sa1 125 VLIGNKADLPDQREVNERQARELADKY-------GIPYFETSAATGQNV 166 (186)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHT-------TCCEEEEBTTTTBTH
T ss_pred EEEeeeccchhhhcchHHHHHHHHHHc-------CCEEEEEeCCCCCCH
Confidence 999999998643221111 11111111 235688999999988
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=1e-13 Score=125.42 Aligned_cols=144 Identities=13% Similarity=0.200 Sum_probs=88.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..+|+++|.+|||||||++++++..+. ....||.... .. +.... .
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~---~~~~~t~~~~~~~~~~~~~-----------------~------------- 50 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFV---PDYDPTIEDSYLKHTEIDN-----------------Q------------- 50 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC---TTCCTTCCEEEEEEEEETT-----------------E-------------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC---cccCcceeecccccccccc-----------------c-------------
Confidence 368999999999999999999997753 2222332211 11 11000 0
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH----hCCCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL----RGHDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~~~vilVlN 209 (551)
...+.++||+|... +......++..+|++++|+|..+.........+...+ ...+.|+++|.|
T Consensus 51 --~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgn 117 (169)
T d1x1ra1 51 --WAILDVLDTAGQEE-----------FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 117 (169)
T ss_dssp --EEEEEEEECCSCGG-----------GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred --cccccccccccccc-----------cccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEec
Confidence 03488999999864 2333456778999999999998522222223343333 245789999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCC-CC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQ-PL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~-~~ 252 (551)
|+|+.....+. +.........+ .+.+.+||+++. |+
T Consensus 118 K~Dl~~~~~v~~e~~~~~~~~~~-------~~~~e~Sak~~~~nV 155 (169)
T d1x1ra1 118 KVDLMHLRKVTRDQGKEMATKYN-------IPYIETSAKDPPLNV 155 (169)
T ss_dssp CTTCSTTCCSCHHHHHHHHHHHT-------CCEEEEBCSSSCBSH
T ss_pred ccchhhhceeehhhHHHHHHHcC-------CEEEEEcCCCCCcCH
Confidence 99987542211 11111221222 256789998875 77
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1e-14 Score=132.27 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=85.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+.+|+++|.+|||||||+|+|++..+. ....||... +...... +.+
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~---~~~~~Ti~~~~~~~~~~-----~~~------------------------- 49 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFE---KKYVATLGVEVHPLVFH-----TNR------------------------- 49 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC--------CCEEEETTEEEEEEEEC-----BTT-------------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCC---cccccceeccccccccc-----ccc-------------------------
Confidence 368999999999999999999987752 122223211 1111000 000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh--CCCCcEEEEEcCCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR--GHDDKIRIVLNKAD 212 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~--~~~~~vilVlNK~D 212 (551)
....+.++||||... +......++..+|++++|+|+++.........++..+. ..+.|+++|.||+|
T Consensus 50 ~~~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~D 118 (170)
T d1i2ma_ 50 GPIKFNVWDTAGQEK-----------FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 118 (170)
T ss_dssp CCEEEEEEECTTHHH-----------HSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCC
T ss_pred ccccccccccccccc-----------cceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhh
Confidence 003488999999653 12223345689999999999986333233344444333 24789999999999
Q ss_pred CCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.......+. ..+.. ....+.+.+||++|.|+
T Consensus 119 l~~~~~~~~~---~~~~~-----~~~~~~~e~Sak~~~~v 150 (170)
T d1i2ma_ 119 IKDRKVKAKS---IVFHR-----KKNLQYYDISAKSNYNF 150 (170)
T ss_dssp CSCSCCTTTS---HHHHS-----SCSSEEEEEBTTTTBTT
T ss_pred hhhhhhhhHH---HHHHH-----HcCCEEEEEeCCCCCCH
Confidence 9764322111 11111 22346788999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.45 E-value=2.7e-13 Score=122.94 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=86.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+|+|.+|||||||+|+|.+.++... .+...+...... ..+
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~--~~~~~~~~~~~~------------------~~~---------------- 58 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHT--SPTIGSNVEEIV------------------INN---------------- 58 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEE--ECCSCSSCEEEE------------------ETT----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcc--ccccceeEEEEe------------------ecc----------------
Confidence 47899999999999999999999875321 111111111100 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
..+.++|++|.... ..........++++++++|..+............... ....|+++|+||+
T Consensus 59 -~~~~~~d~~~~~~~-----------~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 126 (177)
T d1zj6a1 59 -TRFLMWDIGGQESL-----------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 126 (177)
T ss_dssp -EEEEEEECCC---------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECT
T ss_pred -eEEEEecccccccc-----------ccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcc
Confidence 35889999987652 2223445678999999999986333222222222222 3578999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+. ...+ .+... .....+++.+||++|.|+
T Consensus 127 Dl~~~~~~~~i-~~~~-~~~~~-~~~~~~~~~~Sa~tg~Gi 164 (177)
T d1zj6a1 127 DVKECMTVAEI-SQFL-KLTSI-KDHQWHIQACCALTGEGL 164 (177)
T ss_dssp TSTTCCCHHHH-HHHH-TGGGC-CSSCEEEEECBTTTTBTH
T ss_pred cccccCcHHHH-HHHH-HHHhh-HhcCCEEEEEeCCCCCCH
Confidence 98654322221 1111 11111 223457888999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.1e-13 Score=127.07 Aligned_cols=147 Identities=17% Similarity=0.163 Sum_probs=86.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.++|+|+|.+|||||||+++|++..+. ....||.......... . .|.
T Consensus 9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~---~~~~~Ti~~~~~~~~~-----~----------~~~--------------- 55 (185)
T d2atxa1 9 MLKCVVVGDGAVGKTCLLMSYANDAFP---EEYVPTVFDHYAVSVT-----V----------GGK--------------- 55 (185)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---CSCCCSSCCCEEEEEE-----S----------SSC---------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhhCCCC---CcCCCceeeeeeEEEe-----e----------CCc---------------
Confidence 468999999999999999999987753 2222332221111000 0 000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChH-HHHHHHHHh--CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE-FRRSIEALR--GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~-~~~~l~~l~--~~~~~vilVlNK~D 212 (551)
...+.++||+|... +......++..+|++++|+|+++...... ...+...++ ..+.|+++|.||+|
T Consensus 56 ~~~l~i~D~~g~e~-----------~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~D 124 (185)
T d2atxa1 56 QYLLGLYDTAGQED-----------YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 124 (185)
T ss_dssp EEEEEEECCCCSSS-----------STTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTT
T ss_pred eEEeecccccccch-----------hhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccc
Confidence 03478999999865 22223345678999999999985221111 122333333 34679999999999
Q ss_pred CCCHHHHHHH-------------HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRV-------------YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~-------------~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+....... ........+ ..+.+.+||++|.|+
T Consensus 125 l~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~------~~~~~E~SAk~~~gv 171 (185)
T d2atxa1 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIG------ACCYVECSALTQKGL 171 (185)
T ss_dssp STTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT------CSCEEECCTTTCTTH
T ss_pred cccchhhhhhhhhcccccccHHHHHHHHHHcC------CCEEEEecCCCCcCH
Confidence 9864332111 011111111 134567899999998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=9.5e-14 Score=124.79 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=84.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccc-eEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~-~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|.+|||||||+|+|++..+... ..+|.. ......... .+..
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------------~~~~-------------- 50 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDR---TEATIGVDFRERAVDI---------------DGER-------------- 50 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSS---CCCCCSCCEEEEEEEE---------------TTEE--------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCc---cCcccccccceeeeee---------------eccc--------------
Confidence 5799999999999999999998875322 122211 111100000 0000
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~ 211 (551)
..+.++|++|.... .......++..+|++++|+|..+.........++..+. ..+.|+++|.||+
T Consensus 51 -~~~~~~~~~~~~~~----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~ 119 (165)
T d1z06a1 51 -IKIQLWDTAGQERF----------RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKC 119 (165)
T ss_dssp -EEEEEEECCCSHHH----------HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECT
T ss_pred -eEEEEEeccCchhh----------ccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccc
Confidence 34789999986531 11223456789999999999986322222234444433 2467999999999
Q ss_pred CCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCC
Q psy11743 212 DMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQP 251 (551)
Q Consensus 212 Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~ 251 (551)
|+....++. +.........+ .+.+.+||+++.+
T Consensus 120 Dl~~~~~v~~~~~~~~~~~~~-------~~~~e~SAkt~~~ 153 (165)
T d1z06a1 120 DLRSAIQVPTDLAQKFADTHS-------MPLFETSAKNPND 153 (165)
T ss_dssp TCGGGCCSCHHHHHHHHHHTT-------CCEEECCSSSGGG
T ss_pred cchhccchhHHHHHHHHHHCC-------CEEEEEecccCCc
Confidence 986532111 11112222121 2567899987654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.4e-14 Score=131.78 Aligned_cols=149 Identities=20% Similarity=0.184 Sum_probs=65.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
+..++|+++|.+|||||||+++|++..+. ....+|.........-. +. +..
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~----~~----------~~~------------ 54 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN---STFISTIGIDFKIRTIE----LD----------GKR------------ 54 (173)
T ss_dssp SEEEEEEEECCCCC-------------------CHHHHHCEEEEEEEEE----ET----------TEE------------
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCC---CccCccccceEEEEEEE----EC----------CEE------------
Confidence 34578999999999999999999987642 22223322111100000 00 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---CCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---GHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~~vilVlNK 210 (551)
..+.++||||... +......++..+|++++|+|+++.........+...+. ..+.|+++|.||
T Consensus 55 ---~~l~i~D~~G~e~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k 120 (173)
T d2fu5c1 55 ---IKLQIWDTAGQER-----------FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120 (173)
T ss_dssp ---EEEEEEEC--------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ---EEEEEEECCCchh-----------hHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEec
Confidence 3478999999764 23333345689999999999985221112233333333 456899999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+....... +......... ..+.+.+||++|.|+
T Consensus 121 ~D~~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~g~gv 156 (173)
T d2fu5c1 121 CDVNDKRQVSKERGEKLALDY-------GIKFMETSAKANINV 156 (173)
T ss_dssp --CCSCCCSCHHHHHHHHHHH-------TCEEEECCC---CCH
T ss_pred ccchhhcccHHHHHHHHHHhc-------CCEEEEEeCCCCCCH
Confidence 9998532211 1111111111 236678999999998
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.4e-13 Score=123.35 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=84.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCcc-ceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTT-DRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt-~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
..+|+++|.+|||||||+|+|++...... ..+.++. +.... +.... ..
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~-----------------~~------------ 52 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMD-SDCEVLGEDTYERTLMVDG-----------------ES------------ 52 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTC-CC---CCTTEEEEEEEETT-----------------EE------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCcc-ccccceeeecceeeeccCC-----------------ce------------
Confidence 36899999999999999999998764211 1111221 11111 11110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhC----CCCcEEEEEc
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRG----HDDKIRIVLN 209 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~~vilVlN 209 (551)
..+.++|+||... + .++ ....++..+|++++|+|+++.........+...+.. .+.|+++|.|
T Consensus 53 ---~~~~~~d~~~~~g---~-----e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgn 119 (172)
T d2g3ya1 53 ---ATIILLDMWENKG---E-----NEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 119 (172)
T ss_dssp ---EEEEEECCTTTTH---H-----HHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred ---eeeeeeccccccc---c-----ccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEec
Confidence 2367899886532 0 012 233456899999999999852222222344444443 3689999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQQLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+|+.+..++. +...+....+ ..+.+.+||++|.|+
T Consensus 120 K~Dl~~~~~v~~~~~~~~a~~~-------~~~~~e~Sak~g~~i 156 (172)
T d2g3ya1 120 KSDLVRCREVSVSEGRACAVVF-------DCKFIETSAAVQHNV 156 (172)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHH-------TCEEEECBTTTTBSH
T ss_pred cccccccccccHHHHHHHHHHc-------CCeEEEEeCCCCcCH
Confidence 99986432211 1111111111 235678999999998
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.4e-13 Score=126.20 Aligned_cols=148 Identities=19% Similarity=0.207 Sum_probs=88.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE--EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA--VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~--i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
.+|+|+|.+|||||||+|+|++..+.. ...||...... +.... +
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~f~~---~~~~ti~~~~~~~~~~~~----------------~--------------- 51 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDG----------------K--------------- 51 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCS---SCCCCSCCEEEEEEEETT----------------E---------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCc---ccccceeeceeeeeeccC----------------c---------------
Confidence 689999999999999999999988532 22334322211 11110 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHh--CCCCcEEEEEcCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALR--GHDDKIRIVLNKA 211 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~--~~~~~vilVlNK~ 211 (551)
...+.++|++|... +......++..+|++++|+|+.+........ .+...++ ..+.|+++|.||+
T Consensus 52 -~~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~ 119 (183)
T d1mh1a_ 52 -PVNLGLWDTAGQED-----------YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 119 (183)
T ss_dssp -EEEEEEECCCCSGG-----------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECH
T ss_pred -ceEEEeeccccccc-----------chhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecc
Confidence 03478999998754 2223344568999999999998521111111 2333332 3468999999999
Q ss_pred CCCCHHHHHHHHHHH---------HHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGAL---------MWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~---------~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.+........... .+.+.. .....+.+.+||++|.|+
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~E~SAk~~~~V 167 (183)
T d1mh1a_ 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAK--EIGAVKYLECSALTQRGL 167 (183)
T ss_dssp HHHTCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEEEECCTTTCTTH
T ss_pred cchhhhhhhhhhhhccccchhhHHHHHHHH--HcCCceEEEcCCCCCcCH
Confidence 987654332211110 000000 112246678999999988
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.2e-13 Score=127.48 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+++|++..+. ....||.......... + .|..
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~---~~~~~t~~~~~~~~~~-----~----------~~~~-------------- 50 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFP---SEYVPTVFDNYAVTVM-----I----------GGEP-------------- 50 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEE-----E----------TTEE--------------
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCC---CCcCCceeeecceeEe-----e----------CCce--------------
Confidence 368999999999999999999998753 2333443322111000 0 0100
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHh--CCCCcEEEEEcCCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALR--GHDDKIRIVLNKAD 212 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~--~~~~~vilVlNK~D 212 (551)
..+.++||+|... +......++..+|++++|+|.++........ .+...+. ..+.|+++|.||+|
T Consensus 51 -~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~D 118 (191)
T d2ngra_ 51 -YTLGLFDTAGQED-----------YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118 (191)
T ss_dssp -EEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGG
T ss_pred -eeeeccccccchh-----------hhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 3488999999764 3333445567999999999998622111111 2233332 34789999999999
Q ss_pred CCCHHHHHHHHH---------HHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 213 MVDHQQLMRVYG---------ALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 213 l~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.+.....+... .....+.. .....+.+.+||++|.|+
T Consensus 119 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~SAk~~~~V 165 (191)
T d2ngra_ 119 LRDDPSTIEKLAKNKQKPITPETAEKLAR--DLKAVKYVECSALTQKGL 165 (191)
T ss_dssp GGGCHHHHHHHHTTTCCCCCHHHHHHHHH--HTTCSCEEECCTTTCTTH
T ss_pred ccccchhhhhhhhcccccccHHHHHHHHH--HcCCCeEEEEeCCCCcCH
Confidence 875432211100 00000000 112335677999999988
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=5.2e-13 Score=120.58 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=87.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce-EE--EEEeCCCccccCCCCcccccccccccccceeEEecCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FI--AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNS 133 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~-~~--~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~ 133 (551)
.+|+++|.+|||||||++++++.++.. ...||... +. .+.... ..
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~---~~~~t~~~~~~~~~i~~~~-----------------~~------------ 51 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE---NKEPTIGAAFLTQRVTINE-----------------HT------------ 51 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT---TCCCCSSEEEEEEEEEETT-----------------EE------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCc---cccccccceeecccccccc-----------------cc------------
Confidence 589999999999999999999988632 22233221 11 111110 00
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHH---hCCCCcEEEEEcC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEAL---RGHDDKIRIVLNK 210 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l---~~~~~~vilVlNK 210 (551)
..+.++||+|... +......++..+|++++|+|..+.........+...+ .....++++|.||
T Consensus 52 ---~~l~i~d~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk 117 (170)
T d1ek0a_ 52 ---VKFEIWDTAGQER-----------FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117 (170)
T ss_dssp ---EEEEEEEECCSGG-----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ---ccccccccCCchh-----------HHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecc
Confidence 3488999999764 3334566789999999999998622222223333222 2346789999999
Q ss_pred CCCCCHH---HH-HHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQ---QL-MRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~---~~-~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
+|+.+.. .+ .+......... ..+.+.+||++|.|+
T Consensus 118 ~d~~~~~~~~~v~~~~~~~~~~~~-------~~~~~e~Sak~g~gV 156 (170)
T d1ek0a_ 118 IDMLQEGGERKVAREEGEKLAEEK-------GLLFFETSAKTGENV 156 (170)
T ss_dssp GGGGGSSCCCCSCHHHHHHHHHHH-------TCEEEECCTTTCTTH
T ss_pred cccccccchhhhhHHHHHHHHHHc-------CCEEEEecCCCCcCH
Confidence 9975321 11 01111111111 236788999999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=1.8e-13 Score=125.35 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=94.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFL 381 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~ 381 (551)
..++|+++|.+||||||++|+|++.+ ...++..+++|+. ....+++..+.++||||+............. .+.
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~--~~~ 82 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEK--YSN 82 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST--TEEECCCC------CCEEEEETTEEEEESSCSCC-----------CC--SCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--cceeecccccccccceeeeccCCceeeeeccCCcccccccccccccc--chh
Confidence 45799999999999999999999998 4788999888853 3466788889999999986533221111110 111
Q ss_pred hhhhhhccccCcc-------ccccc---------ccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH
Q psy11743 382 NRFQCSLVNSPVL-------KGKVL---------QTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR 445 (551)
Q Consensus 382 ~~~~~~~~~~~~~-------~~~~~---------~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 445 (551)
......+..+|+. .|... .....+.|+|+||+|+... .+.....+.+.+.+.+.
T Consensus 83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~----------~~~~~~~~~~~~~~~~~ 152 (186)
T d1mkya2 83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH----------REKRYDEFTKLFREKLY 152 (186)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT----------GGGCHHHHHHHHHHHCG
T ss_pred HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcc----------hhhhhhhHHHHHHHHhc
Confidence 2222333344432 22222 2245677999999998321 12223334445555443
Q ss_pred --hccchhhh--ccchH-HHHHHHHHHHHHHHh
Q psy11743 446 --KDMPSVFG--KEGKK-KELIKKLDEIYKQIQ 473 (551)
Q Consensus 446 --~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~ 473 (551)
.++|++++ ++|.+ ++|++.|.++|++|.
T Consensus 153 ~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~~~ 185 (186)
T d1mkya2 153 FIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 185 (186)
T ss_dssp GGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ccCCCeEEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 46677777 88999 999999999998775
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=8.6e-13 Score=117.13 Aligned_cols=145 Identities=20% Similarity=0.212 Sum_probs=86.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
+|+++|++|||||||+|+|++.++..+ . ||.......... .+ .
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~--~--~t~~~~~~~~~~-----------------~~----------------~ 44 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATL--Q--PTWHPTSEELAI-----------------GN----------------I 44 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCC--C--CCCSCEEEEECC-----------------TT----------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCee--e--ceeeEeEEEecc-----------------CC----------------e
Confidence 799999999999999999999886432 2 232222211110 00 3
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNKADM 213 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK~Dl 213 (551)
...++||+|.... ..........++.+++++|..+.........+..... ..+.|++++.||.|+
T Consensus 45 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~ 113 (166)
T d2qtvb1 45 KFTTFDLGGHIQA-----------RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 113 (166)
T ss_dssp CEEEEECCCSGGG-----------GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTS
T ss_pred eEEEEeeccchhh-----------hhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccc
Confidence 4789999987542 2223334578999999999985222222222222222 356889999999998
Q ss_pred CCHHHHHHHHHHHHHHccc------ccCCCCceEEEecccCCCCC
Q psy11743 214 VDHQQLMRVYGALMWSLGK------VLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~------l~~~~~~~~v~iSa~~g~~~ 252 (551)
.......+.. ..+ .+.. .......+++.+||++|.|+
T Consensus 114 ~~~~~~~~i~-~~~-~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv 156 (166)
T d2qtvb1 114 PNAVSEAELR-SAL-GLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 156 (166)
T ss_dssp SSCCCHHHHH-HHH-TCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred cccCCHHHHH-HHh-hhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence 6532111111 111 1111 11233456788999999998
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.38 E-value=4.5e-13 Score=128.52 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=63.2
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~~~~l~~l~~~~~~-vilVl 208 (551)
..+.++||||+.+ |...+...+..+|.+++|+|+.. +. ..+..+.+..+...+.+ +++++
T Consensus 102 ~~i~~iDtPGH~d-----------f~~~~~~g~~~aD~ailVVda~~-G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~i 169 (245)
T d1r5ba3 102 RRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARR-GEFEAGFERGGQTREHAVLARTQGINHLVVVI 169 (245)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECST-THHHHTTSTTCCHHHHHHHHHHTTCSSEEEEE
T ss_pred ceeeeeccccccc-----------chhhhhhhhhhhcceeeEEEcCC-CccCCccccccchHHHHHHHHHcCCCeEEEEE
Confidence 4699999999976 66677777899999999999985 42 33556667666666665 78999
Q ss_pred cCCCCCCH---H----HHHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMVDH---Q----QLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~~~---~----~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|+... + ++.+.+...+..++........+++++||++|.|+.
T Consensus 170 NKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~ 221 (245)
T d1r5ba3 170 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVK 221 (245)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTS
T ss_pred EcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcc
Confidence 99998631 1 122222333333321111123578999999999983
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.1e-12 Score=117.48 Aligned_cols=141 Identities=13% Similarity=0.148 Sum_probs=82.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||++++++..+.... .++.+.+..... +.| ..
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~---~t~~~~~~~~i~------v~~----------~~-------------- 51 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE---KTESEQYKKEML------VDG----------QT-------------- 51 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCC---CSSCEEEEEEEE------ETT----------EE--------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcC---CccceeEEEEee------cCc----------eE--------------
Confidence 478999999999999999999998864221 112222111000 011 00
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh------CCCCcEEEEEc
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR------GHDDKIRIVLN 209 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~------~~~~~vilVlN 209 (551)
..+.++||+|... + .++..+|++|+|+|..+.........+..++. ....|+++|+|
T Consensus 52 -~~l~i~Dt~g~~~-----------~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~ 114 (175)
T d2bmja1 52 -HLVLIREEAGAPD-----------A-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 114 (175)
T ss_dssp -EEEEEEECSSCCC-----------H-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEE
T ss_pred -EEEEEeecccccc-----------c-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEee
Confidence 2488999999754 1 14578999999999986211122233444432 23468999999
Q ss_pred CCCCCCHH--HHH-HHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 210 KADMVDHQ--QLM-RVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 210 K~Dl~~~~--~~~-~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|.|+.... .+. ........ .....+.+.+||++|.|+
T Consensus 115 k~d~d~~~~~~v~~~~~~~~~~------~~~~~~~~e~SAk~~~~v 154 (175)
T d2bmja1 115 QDRISASSPRVVGDARARALCA------DMKRCSYYETCATYGLNV 154 (175)
T ss_dssp CTTCCSSSCCCSCHHHHHHHHH------TSTTEEEEEEBTTTTBTH
T ss_pred ecCcchhhhcchhHHHHHHHHH------HhCCCeEEEeCCCCCcCH
Confidence 88874321 110 01111111 112345678999999987
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.37 E-value=2.4e-12 Score=114.88 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=89.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|+++|.+|||||||+|+|++.++.. + .+|........... .
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~--~--~~~~~~~~~~~~~~----------------------~---------- 48 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVVT--T--IPTIGFNVETVTYK----------------------N---------- 48 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC--C--CCCSSEEEEEEEET----------------------T----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcc--e--ecccceeeeeeccC----------------------c----------
Confidence 4689999999999999999999988632 1 22322221111100 0
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHH-Hh---CCCCcEEEEEcCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEA-LR---GHDDKIRIVLNKA 211 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~-l~---~~~~~vilVlNK~ 211 (551)
..+.++|++|.... ..........++.+++++|................ +. ....++++|.||.
T Consensus 49 -~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~ 116 (169)
T d1upta_ 49 -LKFQVWDLGGLTSI-----------RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 116 (169)
T ss_dssp -EEEEEEEECCCGGG-----------GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred -eEEEEeeccccccc-----------cccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeec
Confidence 34788999887642 11222345788999999998853333333332222 22 3467899999999
Q ss_pred CCCCHHHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 212 DMVDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 212 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
|+.......+....... ........+.+.+||++|.|+
T Consensus 117 Dl~~~~~~~~i~~~~~~---~~~~~~~~~~~~~SA~~g~gv 154 (169)
T d1upta_ 117 DMEQAMTSSEMANSLGL---PALKDRKWQIFKTSATKGTGL 154 (169)
T ss_dssp TSTTCCCHHHHHHHHTG---GGCTTSCEEEEECCTTTCTTH
T ss_pred cccccccHHHHHHHHHH---HHHhcCCCEEEEEeCCCCCCH
Confidence 99864322222222111 112334567889999999998
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=2e-13 Score=124.72 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=68.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCc-hhhhhhhHHHhhhhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFR-PLDKFGNSFLNRFQC 386 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~-~~~~~~~~~~~~~~~ 386 (551)
+|+++|.||||||||+|+|.|+. +.++..|++|+... .+....+.++||||+........ ..+++...+......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~---~~~~~~~g~T~~~~-~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKII-EIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 77 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC---CSSSSSTTCTTSCE-EEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---ceeeCCCCEeeccc-ccccccceecccCCceeccccccccccccchhhhhhhhh
Confidence 69999999999999999999987 56899999997432 23345677899999865443322 233333334444444
Q ss_pred hccccCccc------------------ccccc---------cccceeEEEecccCC
Q psy11743 387 SLVNSPVLK------------------GKVLQ---------TPEVARVYIGSFWDQ 415 (551)
Q Consensus 387 ~~~~~~~~~------------------~~~~~---------~~~~~~v~~~~~wd~ 415 (551)
+...+|+.. +...+ ...++.++|+||+|+
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~ 133 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK 133 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred cccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeeh
Confidence 444454321 12212 235677889999997
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=1.9e-12 Score=125.48 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=86.3
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
..|+|+|+.++|||||+.+|+-..-. ....+...+..++..+.+.+ .-.|.++.. ....-.|.+
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~--~~~~g~v~~~~~~~D~~~~E-~~r~~si~~--~~~~~~~~~----------- 70 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGR--IHKIGEVHEGAATMDFMEQE-RERGITITA--AVTTCFWKD----------- 70 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTS--SCC--------------------CCCCCCC--SEEEEEETT-----------
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCc--cccccceecCceEEeccHHH-HhcCCcccc--ceeeeccCC-----------
Confidence 46999999999999999999854321 11111122222222222211 011111110 011111222
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
..++|+||||+.+ |...+..++.-+|.+|+|+|+.. +...+...+.+.+.+.+.|.++++||+|....
T Consensus 71 ~~~n~iDtPG~~d-----------F~~e~~~~l~~~D~avlVvda~~-Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 71 HRINIIDAPGHVD-----------FTIEVERSMRVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 138 (276)
T ss_dssp EEEEEECCCSSSS-----------CSTTHHHHHHHCCEEEEEEETTT-SSCHHHHHHHHHHHTTTCCEEEEEECTTSTTC
T ss_pred eEEEEecCCchhh-----------hHHHHHHHHHhhhheEEeccccC-CcchhHHHHHHHHHHcCCCEEEEEeccccccc
Confidence 5699999999987 66678888999999999999997 99999999999999999999999999998753
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=3.1e-12 Score=122.03 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=72.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-------CChHHHHHHHHHhCCCCc-EEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDEFRRSIEALRGHDDK-IRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~~-vilVl 208 (551)
++++||||||+.+ |...+...+..+|.+|+|+||.. + ...+..+.+..++..+.| +|+++
T Consensus 84 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~-G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~i 151 (239)
T d1f60a3 84 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGV-GEFEAGISKDGQTREHALLAFTLGVRQLIVAV 151 (239)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSH-HHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCC-CccccccCchHhHHHHHHHHHHcCCCeEEEEE
Confidence 5799999999986 88888888999999999999985 3 345666777777777776 77889
Q ss_pred cCCCCCCHH--HHHHH---HHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 209 NKADMVDHQ--QLMRV---YGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 209 NK~Dl~~~~--~~~~~---~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
||+|+.+.. ...+. +...+...+. .....+.+++|+.+|.++
T Consensus 152 NKmD~~~~d~~~~~~~~~el~~~l~~~~~--~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 152 NKMDSVKWDESRFQEIVKETSNFIKKVGY--NPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTC--CGGGCCEEECCTTTCBTT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEEEccCCCcc
Confidence 999998522 11121 2222222222 222356788999999886
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.32 E-value=1.7e-12 Score=125.59 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=87.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+|+|+.++|||||+.+|+...-. ....+...+..+...+... ....|.++. ..+..-.|.+ .
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~--~~~~g~v~~g~~~~D~~~~-E~~r~~ti~--~~~~~~~~~~-----------~ 67 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGA--KERRGRVEEGTTTTDYTPE-AKLHRTTVR--TGVAPLLFRG-----------H 67 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTS--SSSCCCGGGTCCSSCCSHH-HHHTTSCCS--CEEEEEEETT-----------E
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCC--chhhccchhccccccchHH-HHHhCCeEE--eecccccccc-----------c
Confidence 5999999999999999999864321 1111111111100000000 000000000 0000111222 4
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
.+++|||||+.+ |...+..++.-+|.+|+|+|+.. +...+....++.+.+.+.|.++++||+|...
T Consensus 68 ~~n~iDtPGh~d-----------F~~e~~~al~~~D~avlvvda~~-Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~~ 133 (267)
T d2dy1a2 68 RVFLLDAPGYGD-----------FVGEIRGALEAADAALVAVSAEA-GVQVGTERAWTVAERLGLPRMVVVTKLDKGG 133 (267)
T ss_dssp EEEEEECCCSGG-----------GHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECGGGCC
T ss_pred ceeEEccCchhh-----------hhhhhhhhhcccCceEEEeeccC-CccchhHHHHHhhhhcccccccccccccccc
Confidence 699999999976 88888999999999999999996 9999999999999999999999999999753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=5e-12 Score=117.80 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=70.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCcc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVLK 137 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 137 (551)
.|+|+|.+|||||||+|+|++.++.... |..+++.. .+.... ....
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~--~t~~~~~~-~~~~~~-------------------------------~~~~ 47 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ--TSITDSSA-IYKVNN-------------------------------NRGN 47 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBC--CCCSCEEE-EEECSS-------------------------------TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc--CCeeEEEE-EEEEee-------------------------------eeee
Confidence 5999999999999999999998864332 21122211 111111 0003
Q ss_pred CeEEEeCCCCCCCcccccccccch-HHHHHHHHhccCEEEEEEeCCCCCC--ChHHHHHHHHHh-----CCCCcEEEEEc
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDF-TGVLEWFAERVDRIILLFDAHKLDI--SDEFRRSIEALR-----GHDDKIRIVLN 209 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~-~~~~~~~~~~aD~il~VvDa~~~~~--~~~~~~~l~~l~-----~~~~~vilVlN 209 (551)
.+.++||||... + ......+...+|.+++|+|+.+... .+....+...+. ....|+++|+|
T Consensus 48 ~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~N 116 (207)
T d2fh5b1 48 SLTLIDLPGHES-----------LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 116 (207)
T ss_dssp EEEEEECCCCHH-----------HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred eeeeeecccccc-----------ccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEE
Confidence 488999999753 2 2345567799999999999984111 111112222222 24578999999
Q ss_pred CCCCCC
Q psy11743 210 KADMVD 215 (551)
Q Consensus 210 K~Dl~~ 215 (551)
|+|+..
T Consensus 117 K~Dl~~ 122 (207)
T d2fh5b1 117 KQDIAM 122 (207)
T ss_dssp CTTSTT
T ss_pred CcccCC
Confidence 999974
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.30 E-value=8e-12 Score=118.14 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=71.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHHHHHHHHHhCCCC-cEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEFRRSIEALRGHDD-KIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~~~~l~~l~~~~~-~vilVl 208 (551)
..+++|||||+.+ |...+...+.-+|.+|+|+|+.. +. ..+..+.+..+...+. ++|+++
T Consensus 81 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~-G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~i 148 (224)
T d1jnya3 81 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 148 (224)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred ceeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEeccc-CcccccccccchhHHHHHHHHHhCCCceEEEE
Confidence 4699999999986 88888899999999999999986 53 3344445544444444 588899
Q ss_pred cCCCCCCH---HH----HHHHHHHHHHHcccccCCCCceEEEecccCCCCCc
Q psy11743 209 NKADMVDH---QQ----LMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPLV 253 (551)
Q Consensus 209 NK~Dl~~~---~~----~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~~ 253 (551)
||+|+... +. +...+...+...+. .....+.+++||..|.|+.
T Consensus 149 NK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~--~~~~i~~IPISA~~G~NV~ 198 (224)
T d1jnya3 149 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF--NTNKVRFVPVVAPSGDNIT 198 (224)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTC--CCTTCEEEECBTTTTBTTT
T ss_pred EcccCCCccccHHHHHHHHHHHHhHHHhcCC--CcccCeEEEEEccCCCCcc
Confidence 99999742 11 12222333333344 3445678899999988873
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=2.7e-12 Score=117.02 Aligned_cols=115 Identities=19% Similarity=0.268 Sum_probs=70.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCCc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~l 136 (551)
.+|+++|.+|||||||+++++...+. ....||.......... +. +. .
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~---~~~~~t~~~~~~~~~~-----~~----------~~---------------~ 49 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTASFE-----ID----------TQ---------------R 49 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCSEEEEEEEEE-----CS----------SC---------------E
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC---CccCCceeeccccccc-----cc----------ce---------------E
Confidence 47999999999999999999998763 2333342221111000 00 00 0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHH-HHHHHHh--CCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFR-RSIEALR--GHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~-~~l~~l~--~~~~~vilVlNK~Dl 213 (551)
..+.++||+|... +......++..+|++++|+|..+........ .+...+. ..+.|+++|.||+|+
T Consensus 50 ~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (179)
T d1m7ba_ 50 IELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 118 (179)
T ss_dssp EEEEEEEECCSGG-----------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred Eeecccccccccc-----------ccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccc
Confidence 3478999999754 1112234568999999999998521111111 2223232 357899999999998
Q ss_pred CC
Q psy11743 214 VD 215 (551)
Q Consensus 214 ~~ 215 (551)
..
T Consensus 119 ~~ 120 (179)
T d1m7ba_ 119 RT 120 (179)
T ss_dssp GG
T ss_pred cc
Confidence 64
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=8e-12 Score=113.52 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=68.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
.+|+++|.+||||||++|+|++... ..++..+++|+. ......+.++.++||||..... .....+ +..+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~--~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~---~~~~~~---~~~~ 77 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEF---MDQE 77 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHH---HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc--eeecccCCcccccccceeeeeeeeeeecccccccccc---cccchh---cccc
Confidence 4799999999999999999999973 678889998852 2245577889999999987643 112222 2344
Q ss_pred hhhhccccCccc-------ccc-----------cccccceeEEEecccCC
Q psy11743 384 FQCSLVNSPVLK-------GKV-----------LQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 384 ~~~~~~~~~~~~-------~~~-----------~~~~~~~~v~~~~~wd~ 415 (551)
+..++..+|+.. +.. ....+.+.++|+||+|+
T Consensus 78 ~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl 127 (178)
T d1wf3a1 78 VYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127 (178)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred cccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhccccc
Confidence 555666666421 111 11234566888888887
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.22 E-value=2.6e-11 Score=109.76 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=82.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
...+|+++|.+|||||||+|+|++..+.......+.++.. +.++.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~---~~~~~-------------------------------- 56 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE---LTIAG-------------------------------- 56 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE---EEETT--------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeE---EEecc--------------------------------
Confidence 4579999999999999999999998764222221122111 11111
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh----CCCCcEEEEEcC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR----GHDDKIRIVLNK 210 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~~vilVlNK 210 (551)
..+.++|++|...... .........+.+++++|.................. ..+.|++++.||
T Consensus 57 --~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K 123 (186)
T d1f6ba_ 57 --MTFTTFDLGGHIQARR-----------VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNK 123 (186)
T ss_dssp --EEEEEEEECC----CC-----------GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEEC
T ss_pred --cccccccccchhhhhh-----------HHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEec
Confidence 3367888888765221 12234578999999999885323233222222222 247899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcccc-----------cCCCCceEEEecccCCCCC
Q psy11743 211 ADMVDHQQLMRVYGALMWSLGKV-----------LQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 211 ~Dl~~~~~~~~~~~~~~~~l~~l-----------~~~~~~~~v~iSa~~g~~~ 252 (551)
.|+.......+. ...+ .+... ......+++.+||++|.|+
T Consensus 124 ~D~~~~~~~~~i-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi 174 (186)
T d1f6ba_ 124 IDRPEAISEERL-REMF-GLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 174 (186)
T ss_dssp TTSTTCCCHHHH-HHHH-TCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSH
T ss_pred cCccccCCHHHH-HHHH-hhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCH
Confidence 998643211111 1111 11100 0112346788999999998
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=8.1e-12 Score=124.71 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=59.7
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
.+++|||||+.+ |...+..++.-+|.+++|+|+.. ++..+...+++.+.+.+.|+++|+||+|..
T Consensus 97 ~inliDtPGh~d-----------F~~ev~~al~~~D~allVVda~e-Gv~~qT~~~~~~a~~~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 97 LINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDTIE-GVCVQTETVLRQALGERIKPVVVINKVDRA 161 (341)
T ss_dssp EEEEECCCCCCS-----------SCHHHHHHHHTCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred EEEEEcCCCcHH-----------HHHHHHHHHhhcCceEEEEeccc-CcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence 489999999987 77788888999999999999997 999999999999999999999999999964
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.19 E-value=3.9e-12 Score=116.24 Aligned_cols=142 Identities=19% Similarity=0.181 Sum_probs=82.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEE-EEe-cCCCccccCCceeecCCCCCchhhhhhhHHHh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIA-VMY-DEREGSVPGNALVVDPKKQFRPLDKFGNSFLN 382 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~-~~~-~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~ 382 (551)
+.|+++|+||||||||+|+|.+.+ ..++..+++|+ ... ..+ ++..+.++||||+......... ....++.
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~---~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~---~~~~~l~ 75 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAK---PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG---LGHQFLR 75 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC---CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT---THHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC---CceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHH---HHHHHHH
Confidence 358999999999999999999987 45666665553 222 233 4567889999998653322211 1122222
Q ss_pred hhhhh--c---cccCccc----------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHH
Q psy11743 383 RFQCS--L---VNSPVLK----------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYII 441 (551)
Q Consensus 383 ~~~~~--~---~~~~~~~----------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~ 441 (551)
....+ + ....... .......+.+.++|+||+|++-. . ...+.+.
T Consensus 76 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----------~-----~~~~~~~ 140 (185)
T d1lnza2 76 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----------A-----ENLEAFK 140 (185)
T ss_dssp HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----------H-----HHHHHHH
T ss_pred HHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----------H-----HHHHHHH
Confidence 21111 0 0000000 11111134677899999999311 0 1233445
Q ss_pred HHHHhccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 442 SALRKDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 442 ~~l~~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
+.+....|++.+ ++|.| ++|++.+.+..
T Consensus 141 ~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L 171 (185)
T d1lnza2 141 EKLTDDYPVFPISAVTREGLRELLFEVANQL 171 (185)
T ss_dssp HHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred HHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 555455676666 88888 88888876543
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=7.4e-12 Score=113.89 Aligned_cols=136 Identities=17% Similarity=0.169 Sum_probs=80.2
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c-eEE--EEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R-FIA--VMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r-~~~--~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
.|+|+|+|||||||++|+|.|.+ ..++..+++| + ... ....+..+.++||||+...... .+.+...++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~---~~~~~~~~l-- 74 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAH---PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE---GKGLGLEFL-- 74 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC---CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG---SCCSCHHHH--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchH---HHHHHHHHH--
Confidence 48999999999999999999987 3445554444 3 222 2235667889999998763321 112222222
Q ss_pred hhhhccccCcc-------c--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHH
Q psy11743 384 FQCSLVNSPVL-------K--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIIS 442 (551)
Q Consensus 384 ~~~~~~~~~~~-------~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 442 (551)
..+..+|+. . .........+.++|+||+|+. +++ ..+.+.+
T Consensus 75 --~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~----------~~~------~~~~~~~ 136 (180)
T d1udxa2 75 --RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL----------EEE------AVKALAD 136 (180)
T ss_dssp --HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS----------CHH------HHHHHHH
T ss_pred --HHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhh----------hHH------HHHHHHH
Confidence 222222211 0 001111345778999999982 111 1233344
Q ss_pred HHH-hccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 443 ALR-KDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 443 ~l~-~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.+. ...|++++ ++|.| ++|++.+.++.
T Consensus 137 ~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 137 ALAREGLAVLPVSALTGAGLPALKEALHALV 167 (180)
T ss_dssp HHHTTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 443 45566666 88888 88888887755
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.16 E-value=3.8e-11 Score=110.56 Aligned_cols=151 Identities=12% Similarity=0.109 Sum_probs=83.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
.-|+|+++|.|||||||++|+|.|.+. .+.++..+++|+............++|++++..+.......+.... ++...
T Consensus 22 ~~~~I~lvG~~n~GKSTLin~L~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~ 99 (195)
T d1svia_ 22 GLPEIALAGRSNVGKSSFINSLINRKN-LARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGR-MIETY 99 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHhcCCCc-eEEeecccceeeecccccccccceEEEEEeeccccccccccchhhh-HHhhh
Confidence 346899999999999999999999762 2577888888875555555667778888888776654433333222 22232
Q ss_pred hhhccccCc-------cccccc---------ccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHH--h
Q psy11743 385 QCSLVNSPV-------LKGKVL---------QTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALR--K 446 (551)
Q Consensus 385 ~~~~~~~~~-------~~~~~~---------~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~ 446 (551)
......+|+ ..+.+. +...++.++|+||+|+. .....++..+.+.+.+. .
T Consensus 100 ~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~------------~~~~~~~~~~~~~~~l~~~~ 167 (195)
T d1svia_ 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI------------PKGKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS------------CGGGHHHHHHHHHHHHTCCT
T ss_pred hccccchhhhhhhhhccccccccccccccccccccCcceechhhcccc------------CHHHHHHHHHHHHHHhcccC
Confidence 222222222 222222 22456778899999982 11122234444555553 3
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
+.+++++ ++|.+ ++|++.+.+..
T Consensus 168 ~~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 168 EDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3444554 78888 88888887654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=9.8e-12 Score=110.54 Aligned_cols=137 Identities=16% Similarity=0.103 Sum_probs=89.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
++|+++|.|||||||++|+|.|++ ...++..|++|+ .......+..+.+.||||+.... ....++++. .+
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--~~~~~~~~~---~~ 73 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET--NDLVERLGI---ER 73 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHT--BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC--CTTCCCCCH---HH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--ceeeeccccccccceeEEEEeCCeeEEeccccccccCC--ccHHHHHHH---HH
Confidence 479999999999999999999987 367888888885 44566778888999999987643 223333332 33
Q ss_pred hhhhccccCcc-------ccccccc-------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPVL-------KGKVLQT-------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~~-------~~~~~~~-------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
+..++..+|+. .+...++ ...+.++++||.|..-+ . ..+++...+..+.|
T Consensus 74 ~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~------------~----~~~~~~~~~~~~~~ 137 (160)
T d1xzpa2 74 TLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK------------I----NEEEIKNKLGTDRH 137 (160)
T ss_dssp HHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC------------C----CHHHHHHHHTCSTT
T ss_pred HHHHHHhCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccch------------h----hhHHHHHHhCCCCc
Confidence 34444444432 2222222 23445777999998321 1 12345555555567
Q ss_pred hhhh--ccchH-HHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLD 466 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~ 466 (551)
++.+ ++|.+ ++|++.|.
T Consensus 138 ~~~vSA~~g~gi~~L~~~I~ 157 (160)
T d1xzpa2 138 MVKISALKGEGLEKLEESIY 157 (160)
T ss_dssp EEEEEGGGTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 6666 78888 88887763
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.09 E-value=1.6e-10 Score=109.58 Aligned_cols=74 Identities=12% Similarity=0.021 Sum_probs=46.0
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHH--hccCEEEEEEeCCCCCCChHHHHHHHH-----HhCCCCcEEEEEc
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA--ERVDRIILLFDAHKLDISDEFRRSIEA-----LRGHDDKIRIVLN 209 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~--~~aD~il~VvDa~~~~~~~~~~~~l~~-----l~~~~~~vilVlN 209 (551)
..+.++||||+.+.... ........ ...+.+++++|+.. ....+....... ..+...|.++|+|
T Consensus 95 ~~~~~id~~g~~~~~~~--------~~~~~~~~~~~~~~~~v~vvd~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ivvin 165 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLF--------HEFGVRLMENLPYPLVVYISDPEI-LKKPNDYCFVRFFALLIDLRLGATTIPALN 165 (244)
T ss_dssp CSEEEEECCSSHHHHHH--------SHHHHHHHHTSSSCEEEEEECGGG-CCSHHHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred cceeeeccccchhHHHH--------HHHHHHHHhhccCceEEEEecccc-ccCchhHhhHHHHHHHHHHHhCCCceeeee
Confidence 46899999999752211 11111112 35678999999985 555544222211 1245789999999
Q ss_pred CCCCCCHHHH
Q psy11743 210 KADMVDHQQL 219 (551)
Q Consensus 210 K~Dl~~~~~~ 219 (551)
|+|+...++.
T Consensus 166 K~D~~~~~~~ 175 (244)
T d1yrba1 166 KVDLLSEEEK 175 (244)
T ss_dssp CGGGCCHHHH
T ss_pred ccccccHHHH
Confidence 9999986543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=6.2e-11 Score=105.29 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=84.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
.+|+++|.||||||||+|+|.+++. ..++..|++++ .......+.++.+.||||+.+.. ........ .+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~---~~~~~~~~---~~ 73 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS---DEVERIGI---ER 73 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS---SHHHHHHH---HH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eEeecccccccceEeeeeeccCceeeecccccccccc---ccchhHHH---HH
Confidence 5799999999999999999999973 56778888885 33456678889999999988643 22222222 33
Q ss_pred hhhhccccCcc-------cc------------cccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHH
Q psy11743 384 FQCSLVNSPVL-------KG------------KVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISAL 444 (551)
Q Consensus 384 ~~~~~~~~~~~-------~~------------~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 444 (551)
+......+|+. .. ......+++.++|+||+|+.-.. ..+ ..+
T Consensus 74 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~-----------~~~--------~~~ 134 (161)
T d2gj8a1 74 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET-----------LGM--------SEV 134 (161)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC-----------CEE--------EEE
T ss_pred HHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhH-----------HHH--------HHh
Confidence 33334444431 11 11112357778999999982111 000 001
Q ss_pred Hhccchhhh--ccchH-HHHHHHHHH
Q psy11743 445 RKDMPSVFG--KEGKK-KELIKKLDE 467 (551)
Q Consensus 445 ~~~~~~~~~--~~~~~-~~l~~~~~~ 467 (551)
...|++++ ++|.+ ++|++.+.+
T Consensus 135 -~~~~~~~iSAk~~~gi~~L~~~l~~ 159 (161)
T d2gj8a1 135 -NGHALIRLSARTGEGVDVLRNHLKQ 159 (161)
T ss_dssp -TTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred -CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 23455555 78888 888887765
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.06 E-value=2e-10 Score=104.25 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=76.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---------eEEEEecCCCccccCCceeecCCCCCchhhhh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---------FIAVMYDEREGSVPGNALVVDPKKQFRPLDKF 376 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---------~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~ 376 (551)
.+.|+++|+||+|||||+|+|++.. .+...+...+++ .......+..+.++||||..
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~------------ 70 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIA--STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA------------ 70 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEETTEEEEECCCSSHH------------
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhc--CceecccccceeeeeeeccccccccccCCcccccccccccc------------
Confidence 4689999999999999999999864 222222222221 12234456677788888743
Q ss_pred hhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHH
Q psy11743 377 GNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYI 440 (551)
Q Consensus 377 ~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~ 440 (551)
.|...+..++..+|. ..|...|+ .++|.++|+||||++-. +..+ ..+...+++
T Consensus 71 --~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~-~~~~--------~~~~~~~~~ 139 (179)
T d1wb1a4 71 --DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT-EEIK--------RTEMIMKSI 139 (179)
T ss_dssp --HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH-HHHH--------HHHHHHHHH
T ss_pred --ccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCH-HHHH--------HHHHHHHHH
Confidence 244445555555553 34544443 45788999999998321 0000 001112222
Q ss_pred HHHHH--hccchhhh--ccchH-HHHHHHHHHHH
Q psy11743 441 ISALR--KDMPSVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 441 ~~~l~--~~~~~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.+... .+.|++++ ++|.+ ++|++.|.+..
T Consensus 140 ~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l 173 (179)
T d1wb1a4 140 LQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 173 (179)
T ss_dssp HHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcC
Confidence 22111 34566655 77777 77777776543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=8.8e-11 Score=108.05 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=64.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEE-EEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIA-VMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~-i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|.+|||||||+++|.-. ....||...... +....
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f~------~~~~pTiG~~~~~~~~~~-------------------------------- 43 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRII------HGQDPTKGIHEYDFEIKN-------------------------------- 43 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH------HSCCCCSSEEEEEEEETT--------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC------CCCCCeeeeEEEEEeeee--------------------------------
Confidence 468999999999999999999321 123344432111 11100
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC-------h---HHHHHHHH-Hh---CC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-------D---EFRRSIEA-LR---GH 200 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~-------~---~~~~~l~~-l~---~~ 200 (551)
..+.++||+|.... ......+.+.++.+++++|..+.... . ....++.. +. ..
T Consensus 44 --~~~~~~D~~gq~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 110 (200)
T d1zcba2 44 --VPFKMVDVGGQRSE-----------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 110 (200)
T ss_dssp --EEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred --eeeeeecccceeee-----------cccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhc
Confidence 35899999998652 22233445789999999998852221 1 11222222 22 24
Q ss_pred CCcEEEEEcCCCCCC
Q psy11743 201 DDKIRIVLNKADMVD 215 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~ 215 (551)
+.|+++|+||+|+..
T Consensus 111 ~~piilv~NK~Dl~~ 125 (200)
T d1zcba2 111 NVSIILFLNKTDLLE 125 (200)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CceEEEEeccchhhh
Confidence 789999999999853
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=2e-10 Score=104.83 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=85.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|..|||||||+++|....++ |+.-.+ .+....
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~~~--------t~~~~~~~~~~~~--------------------------------- 41 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIHEA--------GTGIVETHFTFKD--------------------------------- 41 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSC--------CCSEEEEEEEETT---------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC--------CccEEEEEEEeee---------------------------------
Confidence 57999999999999999999877653 211111 111110
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCC-------hHH----HHHHHHHh---CCC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS-------DEF----RRSIEALR---GHD 201 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~-------~~~----~~~l~~l~---~~~ 201 (551)
..+.++||+|... +......+...++++++|+|....... ... ..+...+. ...
T Consensus 42 -~~~~i~D~~Gq~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~ 109 (195)
T d1svsa1 42 -LHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 109 (195)
T ss_dssp -EEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT
T ss_pred -eeeeeeccccccc-----------cccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCC
Confidence 3489999999864 444555667899999999998742111 011 12222222 346
Q ss_pred CcEEEEEcCCCCCCH--------------------HHHHHHHHHHHHHcccccCCCCceEEEecccCCCCC
Q psy11743 202 DKIRIVLNKADMVDH--------------------QQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 202 ~~vilVlNK~Dl~~~--------------------~~~~~~~~~~~~~l~~l~~~~~~~~v~iSa~~g~~~ 252 (551)
.|+++|+||+|+... .+........+............+..++||+.+.++
T Consensus 110 ~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv 180 (195)
T d1svsa1 110 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 180 (195)
T ss_dssp SEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred CCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhH
Confidence 799999999986321 111122223333222222223345667999988877
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=4.3e-10 Score=111.63 Aligned_cols=96 Identities=20% Similarity=0.084 Sum_probs=56.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCC-CChHHHHHHHHHhCCCCcEEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDEFRRSIEALRGHDDKIRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~-~~~~~~~~l~~l~~~~~~vilVlNK~Dl~~ 215 (551)
..+.+|+|.|.... -..+...+|.+++|+++...+ +......+++ .+-++|+||+|+..
T Consensus 147 ~d~iliEtvG~gq~--------------e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e------~aDi~VvNKaD~~~ 206 (327)
T d2p67a1 147 YDVVIVETVGVGQS--------------ETEVARMVDCFISLQIAGGGDDLQGIKKGLME------VADLIVINKDDGDN 206 (327)
T ss_dssp CSEEEEEEECCTTH--------------HHHHHTTCSEEEEEECC------CCCCHHHHH------HCSEEEECCCCTTC
T ss_pred CCeEEEeecccccc--------------chhhhhccceEEEEecCCCchhhhhhchhhhc------cccEEEEEeecccc
Confidence 35889999988651 123557899999999876311 1111122332 23489999999987
Q ss_pred HHHHHHHHHHHHHHcc---cccCCCCceEEEecccCCCCC
Q psy11743 216 HQQLMRVYGALMWSLG---KVLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 216 ~~~~~~~~~~~~~~l~---~l~~~~~~~~v~iSa~~g~~~ 252 (551)
..............+. .-...+.+|++.+||++|.|+
T Consensus 207 ~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi 246 (327)
T d2p67a1 207 HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI 246 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred hHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCH
Confidence 5543322222211121 212345568999999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=2.5e-10 Score=102.61 Aligned_cols=101 Identities=16% Similarity=0.230 Sum_probs=55.8
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
+|+++|.+|+||||++|+|.|.. ...++..+++|+ .........++.+.||||+....... ...+ ....+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~---~~~~~ 74 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI--ISQK---MKEVT 74 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGC--CCHH---HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--cceecccCceeeccccccccccccccccccccceeeeeccc--cccc---ccccc
Confidence 69999999999999999999987 357888888885 23345567778889999987644211 1111 12233
Q ss_pred hhhccccCcc-------cccc---------cccccceeEEEecccCC
Q psy11743 385 QCSLVNSPVL-------KGKV---------LQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 385 ~~~~~~~~~~-------~~~~---------~~~~~~~~v~~~~~wd~ 415 (551)
...+..+|+. .+.. ++...++.|+|+||.|+
T Consensus 75 ~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl 121 (171)
T d1mkya1 75 LNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 121 (171)
T ss_dssp HHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCS
T ss_pred ccccccCcEEEEeecccccccccccccccccccccccccccchhhhh
Confidence 4444555532 1111 12234567888999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.97 E-value=9.7e-10 Score=105.69 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=51.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce---EEEEecCCCccccCCceeecCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF---IAVMYDEREGSVPGNALVVDPKK 368 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~---~~~~~~~~~~~l~dt~gi~~~~~ 368 (551)
.+++|+++|++|+||||++|+|+|++. ..++..+++|+. ....+++.++.++||||+.++..
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~--~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~ 95 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERV--VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 95 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCc--eeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcc
Confidence 568999999999999999999999984 577788888862 23456888999999999998653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.95 E-value=5.2e-10 Score=105.61 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=59.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---------------------eEEEEecCCCccccCCcee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---------------------FIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---------------------~~~~~~~~~~~~l~dt~gi 363 (551)
+.|.|+++|++|+|||||+|+|++.. ..++...++|+ ...+.+++.++.++||||.
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh 80 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSA---VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH---HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhhc---chheecCceeeeccccccccccccccccccccceeecccccccccccccce
Confidence 56789999999999999999999873 11111112221 1112345677899999995
Q ss_pred ecCCCCCchhhhhhhHHHhhhhhhccccCc-------cccccccc---------ccceeEEEecccCCC
Q psy11743 364 VDPKKQFRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQT---------PEVARVYIGSFWDQP 416 (551)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~v~~~~~wd~~ 416 (551)
.+ |......++..+|+ ..|...++ ..+|.|+|+||||..
T Consensus 81 ~~--------------f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~ 135 (227)
T d1g7sa4 81 EA--------------FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135 (227)
T ss_dssp SC--------------CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred ec--------------ccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCC
Confidence 32 12233344555553 34655555 456779999999984
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=2.6e-09 Score=97.60 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=70.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceE-EEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~-~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
.+|+++|..|||||||+++|....+. +.||..-. ..+....
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~-----~~pTiG~~~~~~~~~~--------------------------------- 44 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGS-----GVPTTGIIEYPFDLQS--------------------------------- 44 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSS-----CCCCCSCEEEEEECSS---------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC-----CCceeeEEEEEEeccc---------------------------------
Confidence 58999999999999999999877642 23443211 1111100
Q ss_pred ccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC------C----h-HHHHHHHHHhC---CC
Q psy11743 136 LKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI------S----D-EFRRSIEALRG---HD 201 (551)
Q Consensus 136 l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~------~----~-~~~~~l~~l~~---~~ 201 (551)
..+.++||+|... +......+...++.+++++|...... + . ....+...+.. .+
T Consensus 45 -~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~ 112 (200)
T d2bcjq2 45 -VIFRMVDVGGQRS-----------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 112 (200)
T ss_dssp -CEEEEEECCCSTT-----------GGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS
T ss_pred -eeeeecccccccc-----------ccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccC
Confidence 3488999999875 33344455689999999999875211 0 1 11233334432 46
Q ss_pred CcEEEEEcCCCCC
Q psy11743 202 DKIRIVLNKADMV 214 (551)
Q Consensus 202 ~~vilVlNK~Dl~ 214 (551)
.|+++|+||+|+.
T Consensus 113 ~~~~~v~NK~Dl~ 125 (200)
T d2bcjq2 113 SSVILFLNKKDLL 125 (200)
T ss_dssp SEEEEEEECHHHH
T ss_pred ccEEEecchhhhh
Confidence 8999999999975
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=3e-09 Score=108.73 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=62.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC--CcccccCCCcccce-EEEE-ecCCCccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF--PGIHIGPEPTTDRF-IAVM-YDEREGSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~--~~~~v~~~~~~tr~-~~~~-~~~~~~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
.+++|+++|.|||||||++|+|+|... .++......+||+. .... .+..++.++||||+..+... .+.+..
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~---~~~~~~-- 129 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP---PDTYLE-- 129 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC---HHHHHH--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCccccccc---HHHHHH--
Confidence 578999999999999999999999642 23333334556652 2223 35667899999999876522 222221
Q ss_pred HhhhhhhccccCcc--------------cccccccccceeEEEecccCC
Q psy11743 381 LNRFQCSLVNSPVL--------------KGKVLQTPEVARVYIGSFWDQ 415 (551)
Q Consensus 381 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~wd~ 415 (551)
+ .....+|+. .-...+....+.++|.||||.
T Consensus 130 --~--~~~~~~d~~l~~~~~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 130 --K--MKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS 174 (400)
T ss_dssp --H--TTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred --H--hhhhcceEEEEecCCCCCHHHHHHHHHHHHcCCCEEEEEeCccc
Confidence 1 122233321 123333455677999999997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.85 E-value=2.7e-09 Score=104.71 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=70.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccc-cccccccceeEEecCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK-FGNSFLNRFQCSLVNS 133 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~-~g~~~~~~~~~~~~~~ 133 (551)
...+|.|||.||||||||+|+|++.+.+.+...|.+|.+...++..-++ ..++.+.. |... ...
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d------~r~~~l~~~~~~~-------~~~-- 73 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD------ERFDWLCEAYKPK-------SRV-- 73 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC------HHHHHHHHHHCCS-------EEE--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc------cchhhhhhcccCC-------cee--
Confidence 3468999999999999999999998765566777777776554432211 11111000 0000 000
Q ss_pred CCccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 134 PVLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 134 ~~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
...+.++|.||+..+...... .-......++++|++++|+|+..
T Consensus 74 --~~~i~~~DvaGLv~gA~~g~G----LGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 74 --PAFLTVFDIAGLTKGASTGVG----LGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp --CEEEEEECTGGGCCCCCSSSS----SCHHHHHHHTTCSEEEEEEECCC
T ss_pred --cccceeeeccccccccccccc----cHHHHHHHhhccceeEEEEeccC
Confidence 034889999999986544332 33455666799999999999874
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=2e-09 Score=106.75 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=46.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccc-cccccccceeEEecCCCCc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGK-FGNSFLNRFQCSLVNSPVL 136 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~-~g~~~~~~~~~~~~~~~~l 136 (551)
.|++||.||||||||+|+|+|.+. .+..-|.+|.+....+.+.-.+. +++.+.. +... ...+. .....
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~-~v~nypftT~~pn~Gv~~~~~~~-----~~~~~~~~~~~~---~~~~~--~~~~~ 70 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDH-----PCKELGCSPNPQ---NYEYR--NGLAL 70 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEEC-----SCSSSCCSCCCS---SSCEE--TTEEE
T ss_pred cEeEECCCCCCHHHHHHHHHCCCC-chhcCCCCcccCccceeeCCCCc-----hhhhhhhccCcc---ccccc--ccccc
Confidence 699999999999999999999873 23344444544433332210000 0000000 0000 00000 00000
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
..+.++|+||+..+... +..........++++|++++|+|+..
T Consensus 71 ~~i~~~D~pGli~ga~~----g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 71 IPVKMVDVAGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp EEEEEEECC-------------------CCCSSTTCSEEEEEEETTC
T ss_pred ccEEEEECCCcccchhc----ccchHHHHHHhhccceEEEEEecccc
Confidence 34899999999875422 11123333344689999999999973
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.75 E-value=3.8e-09 Score=102.39 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=26.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccce
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 94 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~ 94 (551)
...+|+|+|.||||||||+|+|.|++...+...|+.|++.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~ 150 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ 150 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------
T ss_pred CceEEEEEecCccchhhhhhhhhccceEEECCcccccccc
Confidence 4578999999999999999999999987777888878764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.75 E-value=2.2e-08 Score=98.94 Aligned_cols=95 Identities=22% Similarity=0.171 Sum_probs=56.6
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHH--HHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSI--EALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l--~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.||.|.|..... ......+|..++|+.+.. + ++. +.. ..+ ...-++|+||+|+.
T Consensus 144 ~d~iiiETVG~gq~e--------------~~~~~~~D~~v~v~~p~~-G--D~i-Q~~k~gil---E~aDi~vvNKaD~~ 202 (323)
T d2qm8a1 144 FDVILVETVGVGQSE--------------TAVADLTDFFLVLMLPGA-G--DEL-QGIKKGIF---ELADMIAVNKADDG 202 (323)
T ss_dssp CCEEEEEECSSSSCH--------------HHHHTTSSEEEEEECSCC----------CCTTHH---HHCSEEEEECCSTT
T ss_pred CCeEEEeehhhhhhh--------------hhhhcccceEEEEeeccc-h--hhh-hhhhhhHh---hhhheeeEeccccc
Confidence 358899999987522 123467999999999874 2 111 110 011 13358999999988
Q ss_pred CHHHHHHHHHHHHH-Hccc---ccCCCCceEEEecccCCCCC
Q psy11743 215 DHQQLMRVYGALMW-SLGK---VLQTPEVARVYIGSFWDQPL 252 (551)
Q Consensus 215 ~~~~~~~~~~~~~~-~l~~---l~~~~~~~~v~iSa~~g~~~ 252 (551)
+.....+.....+. .+.. -...+.+|++.+||++|.|+
T Consensus 203 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi 244 (323)
T d2qm8a1 203 DGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGL 244 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH
T ss_pred cchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCH
Confidence 76554332222211 1221 12345678999999999998
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.72 E-value=8.3e-09 Score=100.20 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=61.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSPV 135 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 135 (551)
..+|.|||-||||||||+|+|++.+.. +...|.+|-+....+..-+ ...++.+.. ++-|-..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~-~~~ypf~ti~pn~gvv~v~------d~r~~~l~~-----------~~~~~~~ 63 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIE-AANYPFCTIEPNTGVVPMP------DPRLDALAE-----------IVKPERI 63 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECC------CHHHHHHHH-----------HHCCSEE
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCc-cccCCCCCCCCceEEEecc------cHhHHHHHH-----------hcCCCce
Confidence 368999999999999999999998742 3344444544443332211 111111110 0000000
Q ss_pred c-cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCC
Q psy11743 136 L-KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHK 183 (551)
Q Consensus 136 l-~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~ 183 (551)
. -.+.++|.||+..+.......+.+ ....++++|++++|+|+..
T Consensus 64 ~~a~i~~~Di~GLi~ga~~g~Glg~~----FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 64 LPTTMEFVDIAGLVAGASKGEGLGNK----FLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp ECCEEEEEECCSCCTTHHHHGGGTCC----HHHHHHTCSEEEEEEECSC
T ss_pred eeeeEEEEEccccCCCcccCCCccHH----HHHHHHhccceEEEeeccC
Confidence 0 248899999998765433333333 4455689999999999873
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=5.2e-09 Score=94.36 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred cCCCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 303 FDAKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 303 ~~~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
....++|+++|.||||||||+|+|.+.+.
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34678999999999999999999999863
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=5.7e-08 Score=86.90 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=33.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC---CCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE---REGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~---~~~~l~dt~gi~~~ 366 (551)
++|+++|.+||||||++|.+.+..+. ....+..+.+. .......+ ..+.+.||||....
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 65 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF 65 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-----
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCC-CccCcccccceeeeeeeecCcccccceeeccCCchhh
Confidence 57999999999999999999988753 22222333332 22222222 23457799996543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.64 E-value=7.9e-09 Score=94.90 Aligned_cols=95 Identities=17% Similarity=0.070 Sum_probs=63.2
Q ss_pred cEEEEEeecCCChhHHHHHHHhC-------CCCc------ccccCCCcccc---eEEEEecCCCccccCCceeecCCCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER-------DFPG------IHIGPEPTTDR---FIAVMYDEREGSVPGNALVVDPKKQF 370 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~-------~~~~------~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~~ 370 (551)
+.|+++|.++.|||||.|+|++. .... .+.....|.|. .....+.+..+.++||||-.+
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~----- 78 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHH-----
Confidence 67999999999999999999863 0000 11122223332 233556788999999999553
Q ss_pred chhhhhhhHHHhhhhhhccccCc-------cccccccccc---------ce-eEEEecccCC
Q psy11743 371 RPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQTPE---------VA-RVYIGSFWDQ 415 (551)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------~~-~v~~~~~wd~ 415 (551)
|.....+++..+|+ ..|...|+.+ ++ .|+++||||.
T Consensus 79 ---------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~ 131 (196)
T d1d2ea3 79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA 131 (196)
T ss_dssp ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred ---------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccc
Confidence 44556667777764 4577777643 33 3566999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=98.64 E-value=1.2e-08 Score=93.53 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.|+++|..+.|||||+|+|++..
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEEeccCCcHHHHHHHHHhhh
Confidence 478999999999999999999863
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.9e-08 Score=92.66 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=42.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~~~l~dt~gi~~ 365 (551)
.|+|+++|.||||||||+|+|.+..+. +++|+ ...+..++..+.+.||||...
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~-------~~tt~~~~~~~~~~~~~~~~l~D~~g~~~ 58 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-------PTVVSQEPLSAADYDGSGVTLVDFPGHVK 58 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC-------CBCCCSSCEEETTGGGSSCEEEECCCCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-------CeEEecceEEEEEeCCeEEEEEecccccc
Confidence 579999999999999999999998742 34443 333456788899999999764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.63 E-value=2.4e-08 Score=93.42 Aligned_cols=109 Identities=16% Similarity=0.233 Sum_probs=69.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEE-EEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFI-AVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~-~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..+|+++|..|||||||++++....+. ||..-.. .+..+ .
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~-------pTiG~~~~~~~~~------------------~-------------- 46 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVV-------LTSGIFETKFQVD------------------K-------------- 46 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCC-------CCCSCEEEEEEET------------------T--------------
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCcC-------CCCCeEEEEEEEC------------------c--------------
Confidence 468999999999999999999765531 2322111 11111 0
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCC-------ChHH---HHHHHH-HhC---C
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI-------SDEF---RRSIEA-LRG---H 200 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~-------~~~~---~~~l~~-l~~---~ 200 (551)
..+.++|++|.... ......+.+.++++++++|.+.... .... ...+.. +.. .
T Consensus 47 --~~~~~~D~~Gq~~~-----------r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~ 113 (221)
T d1azta2 47 --VNFHMFDVGGQRDE-----------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 113 (221)
T ss_dssp --EEEEEEECCCSTTT-----------TTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGS
T ss_pred --EEEEEEecCcccee-----------ccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhC
Confidence 34889999998752 2233345689999999999874211 1111 122222 222 3
Q ss_pred CCcEEEEEcCCCCCCH
Q psy11743 201 DDKIRIVLNKADMVDH 216 (551)
Q Consensus 201 ~~~vilVlNK~Dl~~~ 216 (551)
+.|+++++||+|+...
T Consensus 114 ~~~iil~~NK~Dl~~~ 129 (221)
T d1azta2 114 TISVILFLNKQDLLAE 129 (221)
T ss_dssp SCEEEEEEECHHHHHH
T ss_pred CCcEEEEechhhhhhh
Confidence 6899999999998754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=98.62 E-value=1.8e-08 Score=90.34 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=41.8
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
.+..+|+++|.+||||||++|+|.+..+ ..+.+..+.+. ..+..++..+.+.|++|..
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~-~~i~~~~~~~~i~d~~g~~ 71 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDI--SHITPTQGFNI-KSVQSQGFKLNVWDIGGQR 71 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC--EEEEEETTEEE-EEEEETTEEEEEEECSSCG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCC--CcceeeeeeeE-EEeccCCeeEeEeeccccc
Confidence 3568999999999999999999999875 33333344332 2244556677788988754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=7.1e-08 Score=87.14 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=72.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
++|+++|.+||||||++|.+.+..+.. ...+..+.+. .......+ ....+.||+|............+.+.
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~----- 76 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD----- 76 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCS-----
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCC-CcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCcc-----
Confidence 479999999999999999999887532 1112222222 22233333 34556899886554322211111111
Q ss_pred hhhhccccCcc-----------------cccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 384 FQCSLVNSPVL-----------------KGKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 384 ~~~~~~~~~~~-----------------~~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
..+.-.|.. .........+|.++|+||+|++- ..........+.... .
T Consensus 77 --~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~-~ 141 (184)
T d1vg8a_ 77 --CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN------------RQVATKRAQAWCYSK-N 141 (184)
T ss_dssp --EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC------------CCSCHHHHHHHHHHT-T
T ss_pred --EEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc------------cchhHHHHHHHHHHh-c
Confidence 000000000 00111223578899999999831 111111222222222 3
Q ss_pred ccchhhh--ccchH-HHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDE 467 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~ 467 (551)
.++.+.+ ++|.+ ++++..+.+
T Consensus 142 ~~~~~e~Sak~~~gI~e~f~~l~~ 165 (184)
T d1vg8a_ 142 NIPYFETSAKEAINVEQAFQTIAR 165 (184)
T ss_dssp SCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCcCHHHHHHHHHH
Confidence 4565555 88999 999887654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=6.9e-08 Score=86.48 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=43.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEE--EEecCCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIA--VMYDEREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~--~~~~~~~~~l~dt~gi~~ 365 (551)
..|+++|.+|||||||+|+|.|++ ...++..++|++ ... ...+.....++|++|...
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQK--ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS--EEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--ceeeccCCCceEEEEEeeeecCCceeEeecCCCcee
Confidence 468999999999999999999998 356777777775 222 334566666778887654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=5.2e-08 Score=91.17 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=80.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCCCCCCCCCCCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
+-|..+|.|--|+|||||+|+|+.... ..+..++.....+..+++.........-....++|.||.....
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~----------~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~ 71 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQH----------GYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNE 71 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCC----------CCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSC
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhcCC----------CCcEEEEEecccchhhhhhhhcccccceEEecCCcceeccchh
Confidence 358899999999999999999998531 1234444433222222221111111111234567888876655
Q ss_pred Cc----------------cCeEEEeCCCCCCCcccccccccchHHHH-----HHHHhccCEEEEEEeCCCCCCChHH-HH
Q psy11743 135 VL----------------KGISIVDTPGILSGEKQRVDRGYDFTGVL-----EWFAERVDRIILLFDAHKLDISDEF-RR 192 (551)
Q Consensus 135 ~l----------------~~~~lIDTPGi~~~~~~~~~~~~~~~~~~-----~~~~~~aD~il~VvDa~~~~~~~~~-~~ 192 (551)
+. -...+|.|.|..++.. ..... ....-..|.++.|+|+....-.... ..
T Consensus 72 ~~~~l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~--------l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~ 143 (222)
T d1nija1 72 LEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP--------IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI 143 (222)
T ss_dssp HHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH--------HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhhccCCcceeEEeecccchhhH--------HHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHH
Confidence 42 2458999999987432 11111 1122356889999999851100000 12
Q ss_pred HHHHHhCCCCcEEEEEcCCCCCCH
Q psy11743 193 SIEALRGHDDKIRIVLNKADMVDH 216 (551)
Q Consensus 193 ~l~~l~~~~~~vilVlNK~Dl~~~ 216 (551)
+...+... -++|+||+|+.++
T Consensus 144 ~~~Qi~~A---D~ivlNK~Dl~~~ 164 (222)
T d1nija1 144 AQSQVGYA---DRILLTKTDVAGE 164 (222)
T ss_dssp HHHHHHTC---SEEEEECTTTCSC
T ss_pred HHHHHHhC---CcccccccccccH
Confidence 23344433 4789999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=98.54 E-value=3.6e-08 Score=87.30 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=39.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
..+|+++|.+|||||||+|+|.+..+. .+.+..+. ....+..++..+.+.||||..
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~--~~~~t~~~-~~~~~~~~~~~~~~~D~~G~~ 57 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVD--TISPTLGF-NIKTLEHRGFKLNIWDVGGQK 57 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCS--SCCCCSSE-EEEEEEETTEEEEEEEECCSH
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCC--cccceEee-eeeeccccccceeeeecCcch
Confidence 468999999999999999999988642 22222221 223355677788899999943
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.1e-07 Score=84.70 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=37.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCC--ccccCCcee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDERE--GSVPGNALV 363 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~--~~l~dt~gi 363 (551)
.+++++|.+||||||++|.|.+..+. ....++++. ...+..++.. +.+.||||-
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 64 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC---CcccccccceEEEEEEEECCEEEEEEEEECCCc
Confidence 57999999999999999999988742 233333332 2234444444 556799993
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=1e-08 Score=94.89 Aligned_cols=95 Identities=18% Similarity=0.064 Sum_probs=65.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhC----C----CC-cccccCC-----Ccccc---eEEEEecCCCccccCCceeecCCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER----D----FP-GIHIGPE-----PTTDR---FIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~----~----~~-~~~v~~~-----~~~tr---~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
+.|+++|.++.|||||+++|+.. + .. +...... .|.|. ...+.+++..+.++||||-.+
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d---- 79 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD---- 79 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG----
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh----
Confidence 68999999999999999999854 0 00 0111111 15553 445678899999999999653
Q ss_pred CchhhhhhhHHHhhhhhhccccCc-------ccccccccc---------ccee-EEEecccCC
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSPV-------LKGKVLQTP---------EVAR-VYIGSFWDQ 415 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~-v~~~~~wd~ 415 (551)
|.....+++..+|. ..|...|+. .++. |+++||||+
T Consensus 80 ----------f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~ 132 (204)
T d2c78a3 80 ----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM 132 (204)
T ss_dssp ----------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred ----------hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEeccc
Confidence 44556667777764 468887773 4665 456999998
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=1.7e-07 Score=82.81 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=72.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
++|+++|.+|||||||+|.+.+..+.. ...+..+.+. ......++ ..+.+.||+|-....... ..++..
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~-~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~~~~ 74 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT-------KAYYRG 74 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC-------HHHHTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCc-ccccccccccceeeeeecCceeeeeeeccCCccchhhhh-------hhhhcc
Confidence 589999999999999999999876431 1122222222 22233333 345678999866533211 111111
Q ss_pred hhhhccccCccc------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccchh
Q psy11743 384 FQCSLVNSPVLK------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPSV 451 (551)
Q Consensus 384 ~~~~~~~~~~~~------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (551)
+...+.=.|+.. -......+++.++|+||+|+. ++..... +..+.+.+.+ .+|.+
T Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~----------~~~~v~~-~~~~~~~~~~--~~~~~ 141 (164)
T d1z2aa1 75 AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL----------DDSCIKN-EEAEGLAKRL--KLRFY 141 (164)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG----------GGCSSCH-HHHHHHHHHH--TCEEE
T ss_pred CceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcc----------cceeeee-hhhHHHHHHc--CCEEE
Confidence 111111111111 111122467889999999982 1111111 1122233333 24555
Q ss_pred hh--ccchH-HHHHHHHHH
Q psy11743 452 FG--KEGKK-KELIKKLDE 467 (551)
Q Consensus 452 ~~--~~~~~-~~l~~~~~~ 467 (551)
.+ ++|.+ +++++.+.+
T Consensus 142 e~Sak~g~~v~e~f~~l~~ 160 (164)
T d1z2aa1 142 RTSVKEDLNVSEVFKYLAE 160 (164)
T ss_dssp ECBTTTTBSSHHHHHHHHH
T ss_pred EeccCCCcCHHHHHHHHHH
Confidence 44 88888 888877755
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.7e-07 Score=83.71 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=75.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCCC--ccccCCceeecCCCCCchhhhhhhHH
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNSF 380 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~~ 380 (551)
...+|+++|.+|||||||+|.+.+..+.. ...+... ....+..++.. +.+.||+|....... . ..+
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~---~----~~~ 74 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVS---DYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM---R----EQY 74 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS---SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC---H----HHH
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCCCCc---ccccccccceeeEeccCCeeeeeeccccccccccccc---c----chh
Confidence 34689999999999999999999876532 1112222 12224445444 445799986643211 1 111
Q ss_pred HhhhhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHh
Q psy11743 381 LNRFQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRK 446 (551)
Q Consensus 381 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 446 (551)
+..+...+.=.|... -......+++.|+|+||+|++.+ .....+....+.+. .
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~-----------~~~~~~~~~~~~~~--~ 141 (173)
T d2fn4a1 75 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ-----------RQVPRSEASAFGAS--H 141 (173)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG-----------CCSCHHHHHHHHHH--T
T ss_pred hccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhc-----------cccchhhhhHHHHh--c
Confidence 111111111111110 01112356788999999998321 11111112222222 2
Q ss_pred ccchhhh--ccchH-HHHHHHHHHHHHH
Q psy11743 447 DMPSVFG--KEGKK-KELIKKLDEIYKQ 471 (551)
Q Consensus 447 ~~~~~~~--~~~~~-~~l~~~~~~~~~~ 471 (551)
.+|.+.+ ++|.+ ++++..+.+...+
T Consensus 142 ~~~~~e~Sak~g~gv~e~f~~l~~~i~k 169 (173)
T d2fn4a1 142 HVAYFEASAKLRLNVDEAFEQLVRAVRK 169 (173)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 3454444 88999 9999888775533
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.3e-07 Score=82.24 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=37.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.+++..+.... .+..+.+. ......++. .+.+.||||..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 64 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcc-cccccccceeEEEEECCEEEEEEEeccCCch
Confidence 47999999999999999999988753211 11122222 223344444 56678999954
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.46 E-value=1.8e-07 Score=83.25 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=36.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCcee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALV 363 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi 363 (551)
.+|+++|.+||||||++|.|.+..+.. ...+..+.+. ...+...+ ..+.+.||||-
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~ 64 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCc-ccccccccceeeEEEEeecceEEEEEEECCCc
Confidence 479999999999999999999887531 2222333332 22233333 34667899994
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4.5e-07 Score=81.03 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=36.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+++++|.+||||||++|.+.+..+... ..+..+.+. ...+..++. .+.+.||+|..
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e 64 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCc-ccccccceeeeEEEEECCEEEEEEecccCCcH
Confidence 4799999999999999999998864211 111122222 333344443 45688999854
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=98.40 E-value=1.9e-07 Score=81.44 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=37.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~~~l~dt~gi~~ 365 (551)
++|+++|.|||||||++|+|.+.++.... +.+. ...........+.+.|+||...
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~g~~~ 56 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDK 56 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCC----CCSSCCEEEEECSSCEEEEEECCCCGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccc----cceeeEEEEEeeeeEEEEEecCCCccc
Confidence 47999999999999999999988753211 1111 2223344556667789988654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=98.39 E-value=2.9e-07 Score=80.81 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=36.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+..+|+++|.||||||||+|++.+..+. .+.+..+. .......++..+.+.|++|..
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 60 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVV--TTIPTIGF-NVETVTYKNLKFQVWDLGGLT 60 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCCCSSE-EEEEEEETTEEEEEEEECCCG
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCc--ceecccce-eeeeeccCceEEEEeeccccc
Confidence 4578999999999999999999999853 22221111 122233455555666666544
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=98.39 E-value=2.2e-07 Score=83.56 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
.+..+|+++|.+||||||++|.|.+..+ ....+..+. ........+..+.+.|+||...
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~--~~~~~t~~~-~~~~~~~~~~~~~i~D~~g~~~ 73 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIGEV--VTTKPTIGF-NVETLSYKNLKLNVWDLGGQTS 73 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE--EEECSSTTC-CEEEEEETTEEEEEEEEC----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC--Cccccccce-EEEEEeeCCEEEEEEecccccc
Confidence 3578999999999999999999987763 222222221 2333455677788899998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=98.37 E-value=2e-07 Score=82.46 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=38.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCCccccCCcee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPGNALV 363 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~~~l~dt~gi 363 (551)
.+|+++|.+||||||++|.|.+..+.. ...|+.. ....+..++..+.+.|+||-
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~---~~~~T~~~~~~~~~~~~~~~~i~D~~G~ 57 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFNE---DMIPTVGFNMRKITKGNVTIKLWDIGGQ 57 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC---SCCCCCSEEEEEEEETTEEEEEEEECCS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC---cccccceeeeeeeeeeeEEEEEeecccc
Confidence 589999999999999999999887431 1222211 23335567777888999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=5.5e-07 Score=79.35 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=35.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--c-eEEEEecCC--CccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--R-FIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r-~~~~~~~~~--~~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|.+.+..+.. ...+..+ . ......++. .+.+.||+|..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 60 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDN---TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCS---SCCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCC---ccccceeeeccceeeccCCCceeeeecccCCcc
Confidence 68999999999999999999887532 2222222 2 222333443 34578998854
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.8e-07 Score=83.09 Aligned_cols=55 Identities=15% Similarity=0.008 Sum_probs=31.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~ 364 (551)
+|+++|.+||||||++|++.+..+. ...+..+.+....+..++. .+.+.||||..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e 59 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC---
T ss_pred EEEEECCCCcCHHHHHHHHhCCccC--CcCCeeeeeecceeeccccccceeeeeccccc
Confidence 6899999999999999999987642 1111122222223444444 45567999953
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.36 E-value=1.7e-07 Score=86.42 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=21.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+.|+++|..+.|||||+|+|++.
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~ 31 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGI 31 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSC
T ss_pred eEEEEEEccCCcHHHHHHHHHhh
Confidence 58999999999999999999974
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=5.7e-07 Score=79.56 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=36.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~ 364 (551)
..+|+++|.+||||||++|.+++..+.... .+..+.........++. .+.+.|++|-.
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~-~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~ 62 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY-DPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCcc-CCceeeeeeeeeecCcceEeeccccCCCcc
Confidence 458999999999999999999988753211 11112222223334443 34557888843
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=6.1e-07 Score=79.97 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=34.8
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
.+|+++|.+||||||++|.+.+..+. .......+.+. .......+ ....+.|++|...
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 67 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeeeeeeeeeeecCceeeEeeecccCcce
Confidence 38999999999999999999987642 11112222222 22233333 3345678888543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=7.5e-07 Score=79.16 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=71.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
..+|+++|.+|||||||+|.+.+..+..- ..+..+......+..++. .+.+.||+|...-. . ....++..
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----~---~~~~~~~~ 76 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTD-YDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG----A---MREQYMRT 76 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCSS-CCTTCCEEEEEEEEETTEEEEEEEEECC----CC----H---HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCcccccceeeeeeeccccccccccccccccccc----c---cccccccc
Confidence 35899999999999999999998765321 111112122222334443 45677999876532 1 11111122
Q ss_pred hhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
+...+.=.|... ........++.|+|+||+|+.... ....+....+.+.+ .+|
T Consensus 77 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~-----------~v~~~~~~~~~~~~--~~~ 143 (171)
T d2erya1 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR-----------QVTQEEGQQLARQL--KVT 143 (171)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSC-----------SSCHHHHHHHHHHT--TCE
T ss_pred cceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhc-----------cchHHHHHHHHHHc--CCE
Confidence 111111111110 112223467789999999983211 11111122222222 245
Q ss_pred hhhh--ccchH-HHHHHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLDEIY 469 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~~~ 469 (551)
.+.+ ++|.+ ++++..+.+..
T Consensus 144 ~~e~Sak~~~~i~e~f~~l~~~i 166 (171)
T d2erya1 144 YMEASAKIRMNVDQAFHELVRVI 166 (171)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHHHH
Confidence 4444 88888 99988887655
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4.4e-07 Score=80.32 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=37.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc--eEEEEecCCC--ccccCCceeecC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR--FIAVMYDERE--GSVPGNALVVDP 366 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr--~~~~~~~~~~--~~l~dt~gi~~~ 366 (551)
+..+|+++|.+|||||||+|.+.+..+... ..|+... ...+..++.. +.+.||+|....
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~---~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~ 65 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS---YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSC---CCSSCCEEEEEEEEETTEEEEEEEEECCCCCTT
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcc---cCcceecccceEEecCcEEEEeeeccccccccc
Confidence 346899999999999999999998765321 1122111 2223444443 446799987653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.32 E-value=2e-07 Score=86.50 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
.....+++|++|||||||+|+|++...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence 446889999999999999999998653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=9.9e-07 Score=78.53 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=35.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-c--eEEEEec--CCCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-R--FIAVMYD--EREGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r--~~~~~~~--~~~~~l~dt~gi~~~ 366 (551)
.+++++|.+||||||++|.+.+..+. ....+..+ . ....... ...+.+.|++|-...
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 65 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC---C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCC---CCcccceeeccceeeeeeeeeEEEEEeecccCccch
Confidence 37999999999999999999988753 12222222 2 2222233 345667899987653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.31 E-value=9.4e-07 Score=78.02 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=35.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCCC--ccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
.+++++|.+||||||++|.+++..+.. ...|+++ ....+..++.. +.+.||||...
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~ 63 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNP---SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC----------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCC---ccCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 479999999999999999999987532 2223332 23334455544 44689999643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.1e-06 Score=77.93 Aligned_cols=59 Identities=22% Similarity=0.102 Sum_probs=38.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCC--CccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
.+++++|.+||||||+++.+++..+.........+.+ ....+..++. .+.+.||||...
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~ 68 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchh
Confidence 4799999999999999999998875322222222333 2333445554 456789999643
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=5.6e-07 Score=79.60 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=70.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceeecCCCCCchhhhhhhHHHhhh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNSFLNRF 384 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~ 384 (551)
.+|+++|.+||||||++|+|.+..+... ..+..+......+...+.. +.+.|++|..... .....++..+
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-------~~~~~~~~~~ 75 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCCS-CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc-cCCccceeeccceeeeceeeeeeeeeccCccccc-------cchhhhhhcc
Confidence 4799999999999999999999875321 1111111122223333333 4455777654321 0111111111
Q ss_pred hhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccch
Q psy11743 385 QCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMPS 450 (551)
Q Consensus 385 ~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (551)
...+.=.|... -.......++.|+|+||+|++.+..+ .+..+.+.+.+ .+|.
T Consensus 76 ~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~------------~~~~~~~~~~~--~~~~ 141 (166)
T d1ctqa_ 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE------------SRQAQDLARSY--GIPY 141 (166)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSC------------HHHHHHHHHHH--TCCE
T ss_pred cccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccccccc------------HHHHHHHHHHh--CCeE
Confidence 11111111110 11122356888999999998422110 01112222222 2454
Q ss_pred hhh--ccchH-HHHHHHHHH
Q psy11743 451 VFG--KEGKK-KELIKKLDE 467 (551)
Q Consensus 451 ~~~--~~~~~-~~l~~~~~~ 467 (551)
+.+ ++|.+ ++++..+.+
T Consensus 142 ~e~Sak~g~gi~e~f~~i~~ 161 (166)
T d1ctqa_ 142 IETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHH
Confidence 444 88999 888887765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=1.1e-06 Score=79.93 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=39.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
.+|+++|.+||||||++|.|.+..+. ....+..+++. ...+..++ ..+.+.||||...
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~ 67 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCCC-CCcCCccceeEEEEEEEEeeEEEEEEEEECCCchh
Confidence 57999999999999999999987643 22333344443 33344443 3456789999543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=7e-07 Score=79.55 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=36.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEec--CCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYD--EREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~--~~~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.+.+..+... ..+..+.+. ...+..+ ...+.+.||||..
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 65 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDD-SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc-cccccccceeeEEEEecCcceeEEEEECCCch
Confidence 5799999999999999999998875311 112222222 2223333 3345678999943
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=98.28 E-value=8.4e-07 Score=78.70 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=34.2
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCC--CccccCCceeec
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
+|+++|.+||||||++|.+.+..+..-. .+..+......+..++. .+.+.|++|...
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~-~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~ 64 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDY-EPTKADSYRKKVVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCccc-CCccccccccccccccccccccccccccccc
Confidence 7999999999999999999987653211 11111111222334444 345679888654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=98.28 E-value=3.1e-07 Score=81.91 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=39.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+++++|.+||||||++|+|.+..+. ...+..+. ...........+.+.|+||...
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~~--~~~~t~~~-~~~~~~~~~~~~~i~D~~g~~~ 68 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGF-NVETVTYKNVKFNVWDVGGQDK 68 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCCE--EEEEETTE-EEEEEEETTEEEEEEEESCCGG
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCC--Cccceeee-eEEEeeccceeeEEecCCCcch
Confidence 5689999999999999999999877632 11111111 1222444566777899998553
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.26 E-value=6.5e-07 Score=79.24 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=36.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~~--~~~l~dt~gi~~ 365 (551)
..+|+++|.+||||||++|.|.+..+.. ...+..+.+.. .....++. .+.+.||+|...
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 65 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCc-ccccccccccccccccccccccceeeeecCCchh
Confidence 4689999999999999999999887531 11111122222 22222322 234678888654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.2e-06 Score=77.76 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=35.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecCCC--ccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
.+|+++|.+||||||++|.+++..+.. ....|.. ......++.. +.+.||+|...
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~----~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 62 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGTFRE----SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCS----SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC----ccCcceeeccccceeeccccceecccccccccc
Confidence 479999999999999999999877532 1111221 2223334443 44589988653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=5.4e-07 Score=80.57 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=35.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||+++.+.+..+..... +..+.........++ ..+.+.||+|..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~g~~ 61 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYV-PTVFENYVADIEVDGKQVELALWDTAGLE 61 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCC-CCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcC-CceeeeccccccccccceeeeccccCccc
Confidence 478999999999999999999887532111 111111122223333 346678999864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4.4e-07 Score=81.68 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFP 332 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~ 332 (551)
+.++|+++|.+||||||++|.+++..+.
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~ 31 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP 31 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 3578999999999999999999988754
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=98.19 E-value=1.5e-06 Score=77.22 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=38.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeec
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~ 365 (551)
+..+|+++|.+||||||++|+|.+..+ +......+.+. ......+..+.+.|+++...
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~ 71 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNV-EEIVINNTRFLMWDIGGQES 71 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSC--EEEECCSCSSC-EEEEETTEEEEEEECCC---
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCC--CccccccceeE-EEEeecceEEEEeccccccc
Confidence 457999999999999999999999875 34444444332 22334455666777776543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2.4e-06 Score=75.65 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=36.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~ 364 (551)
-+|+++|.+|||||||++.|.+..+.. ...+..+.+. ......++ ..+.+.||+|-.
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 66 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCc-ccccccccccccceeeccceEEEEEeccCCCch
Confidence 378999999999999999999887531 2222222222 23333333 335567888854
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.9e-06 Score=75.63 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=37.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
++|+++|.+||||||++|.|.+..+. .......+.+. ...+..++ ..+.+.||||...
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC-CccccceeecceeEEEEEeccccEEEEEECCCchh
Confidence 57999999999999999999988742 11122222221 22234443 4467789999654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=4.1e-06 Score=75.30 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=36.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~ 364 (551)
..+|+++|.+||||||+++.+++..+..-. .+..+......+...+.. +.+.||+|-.
T Consensus 9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~-~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e 68 (185)
T d2atxa1 9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEY-VPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 68 (185)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSC-CCSSCCCEEEEEESSSCEEEEEEECCCCSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhhCCCCCcC-CCceeeeeeEEEeeCCceEEeecccccccc
Confidence 358999999999999999999988653211 111111122223344433 4578999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.13 E-value=1.7e-06 Score=75.13 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=37.4
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
+++++|.||||||||+|+|.+..+. .+.+..+++. ......+....+.|++|..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~ 55 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA--TLQPTWHPTS-EELAIGNIKFTTFDLGGHI 55 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--CCCCCCSCEE-EEECCTTCCEEEEECCCSG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--eeeceeeEeE-EEeccCCeeEEEEeeccch
Confidence 6899999999999999999998852 3444333332 2234456666677777654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.8e-06 Score=74.07 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=35.5
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecC--CCccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDE--REGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~--~~~~l~dt~gi~~ 365 (551)
.+|+++|.+||||||+++.+.+..+.. ...+..+... ......++ ..+.+.||+|...
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 64 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCc-ccccccccchheeeeccCCccceeeeeccCCcce
Confidence 378999999999999999999887532 1111112222 22233333 3455679998664
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3.1e-06 Score=74.68 Aligned_cols=142 Identities=12% Similarity=0.061 Sum_probs=72.6
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceeecCCCCCchhhhhhhHHHhh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVVDPKKQFRPLDKFGNSFLNR 383 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~~~~~~~~~~~~~~~~~~~~ 383 (551)
..+|+++|.+||||||+++++.+..+.... .+..+......+..++.. +.+.|++|...-. .+ ...++..
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~---~~~~~~~ 74 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY-DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----AM---RDLYMKN 74 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC-CCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----TH---HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCcc-CCccccccceeEEeeeeEEEeccccccCccccc----cc---ccccccc
Confidence 357999999999999999999988764211 111111122223333333 4567888865432 11 1112222
Q ss_pred hhhhccccCccc--------------ccccccccceeEEEecccCCCCccchhhhhhhhhccChhhHHHHHHHHHHhccc
Q psy11743 384 FQCSLVNSPVLK--------------GKVLQTPEVARVYIGSFWDQPLVHDVNRRLFEDRSSTSNSVQAYIISALRKDMP 449 (551)
Q Consensus 384 ~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 449 (551)
+...+.=-|+.. ........++.|+|+||+|++.+.. .. ......+.+.. ...+
T Consensus 75 ~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~-~~~~~~~~~~~-~~~~ 142 (167)
T d1c1ya_ 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VG-KEQGQNLARQW-CNCA 142 (167)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SC-HHHHHHHHHHT-TSCE
T ss_pred cceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccc----------cc-hhHHHHHHHHh-CCCE
Confidence 222221111110 1122345788899999999832211 11 11112222222 2334
Q ss_pred hhhh--ccchH-HHHHHHHHH
Q psy11743 450 SVFG--KEGKK-KELIKKLDE 467 (551)
Q Consensus 450 ~~~~--~~~~~-~~l~~~~~~ 467 (551)
.+.+ ++|.+ ++++..+..
T Consensus 143 ~~e~Sak~g~gv~e~F~~l~~ 163 (167)
T d1c1ya_ 143 FLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp EEECBTTTTBSHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHH
Confidence 4333 78888 888776654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=5.6e-06 Score=73.43 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
-+|+++|.+|||||||+|.+.+..
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCc
Confidence 479999999999999999999775
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.11 E-value=4.7e-07 Score=89.18 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=35.5
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc----eEEEE-----------------------ecCCCccccCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR----FIAVM-----------------------YDEREGSVPGN 360 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr----~~~~~-----------------------~~~~~~~l~dt 360 (551)
.|+++|.|||||||++|+|.+.+ +.++++|-||. .+... +...++.++|+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~---~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~ 78 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD---VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred cEeEECCCCCCHHHHHHHHHCCC---CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence 69999999999999999999987 78899998873 22211 11234779999
Q ss_pred ceeecCCCCCchhhhhhhHHHhhhhhhccccCc
Q psy11743 361 ALVVDPKKQFRPLDKFGNSFLNRFQCSLVNSPV 393 (551)
Q Consensus 361 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (551)
||+...... +..+-+++...++++|+
T Consensus 79 pGli~ga~~-------g~~~~~~~l~~i~~~d~ 104 (319)
T d1wxqa1 79 AGLVPGAHE-------GRGLGNKFLDDLRMASA 104 (319)
T ss_dssp C----------------------CCCSSTTCSE
T ss_pred CCcccchhc-------ccchHHHHHHhhccceE
Confidence 999864311 22333455566677765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=1.5e-06 Score=77.40 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=20.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc---ceEEEEecCC--CccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD---RFIAVMYDER--EGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t---r~~~~~~~~~--~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||+++.|.+..+. -...+..+ ....+..++. .+.+.||||..
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e 66 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAFN---STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66 (173)
T ss_dssp EEEEEECCCCC-------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC---CccCccccceEEEEEEEECCEEEEEEEEECCCch
Confidence 47999999999999999999987642 12122222 1223444443 44568999954
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.4e-06 Score=74.97 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=23.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
.+|+++|.+||||||++|.|.+..+
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~ 30 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKF 30 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCC
Confidence 5799999999999999999998875
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.05 E-value=6.8e-07 Score=83.08 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....+++|++|||||||+|+|++..
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred cceEEEECCCCccHHHHHHhhccHh
Confidence 4567899999999999999999874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.03 E-value=9.4e-06 Score=78.65 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=31.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD 343 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t 343 (551)
..|+++++|.-++||||++|+|+|..+ .|++..|.|.
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~--lP~~~~~~T~ 61 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTR 61 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC--SCCCSSCSCS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCc--CCCCCCcccc
Confidence 578999999999999999999999984 5777777554
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.02 E-value=1.5e-06 Score=80.77 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=59.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC--CCc------ccccCCCccc-------------------------ceEEEEecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD--FPG------IHIGPEPTTD-------------------------RFIAVMYDE 352 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~--~~~------~~v~~~~~~t-------------------------r~~~~~~~~ 352 (551)
-++|+++|..+.||||++++|+... +.. ...+...+++ ........+
T Consensus 9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 88 (222)
T d1zunb3 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 88 (222)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccc
Confidence 4689999999999999999997541 000 0011111111 122244467
Q ss_pred CCccccCCceeecCCCCCchhhhhhhHHHhhhhhhccccC-------ccccccccccc---------cee-EEEecccCC
Q psy11743 353 REGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQTPE---------VAR-VYIGSFWDQ 415 (551)
Q Consensus 353 ~~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---------~~~-v~~~~~wd~ 415 (551)
..+.++||||-.+ |+....+....+| +..|..-|+.+ ++. |+++||||+
T Consensus 89 ~~~~iiD~PGH~d--------------fv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~ 154 (222)
T d1zunb3 89 RKFIIADTPGHEQ--------------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 154 (222)
T ss_dssp EEEEEEECCCSGG--------------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred eEEEEEeccchhh--------------hhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcccc
Confidence 7889999999754 3444555555555 45677777743 454 566999999
Q ss_pred C
Q psy11743 416 P 416 (551)
Q Consensus 416 ~ 416 (551)
+
T Consensus 155 ~ 155 (222)
T d1zunb3 155 N 155 (222)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.9e-06 Score=76.70 Aligned_cols=57 Identities=23% Similarity=0.199 Sum_probs=36.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
.++|+++|.+||||||+++.+.+..+... ..|... ........+. .+.+.||+|-..
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~---~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 63 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE---YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS---CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCC---cCCceeeecceeEeeCCceeeeeccccccchh
Confidence 36899999999999999999998875322 112221 1222233333 466789988653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.99 E-value=3.6e-06 Score=82.03 Aligned_cols=38 Identities=32% Similarity=0.602 Sum_probs=26.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 344 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr 344 (551)
..|+++++|..++||||++|+|+|..+ .|++..|.|..
T Consensus 23 ~lP~ivVvG~~ssGKSSliNaLlG~~~--lP~~~~~~T~~ 60 (306)
T d1jwyb_ 23 DLPQIVVVGSQSSGKSSVLENIVGRDF--LPRGSGIVTRR 60 (306)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC--CCC--------
T ss_pred CCCeEEEEeCCCCCHHHHHHHHhCCCC--CCCCCCccccC
Confidence 468999999999999999999999985 46666665543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.98 E-value=4.4e-06 Score=81.14 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=56.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-----------------CCccccCCceee
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-----------------REGSVPGNALVV 364 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-----------------~~~~l~dt~gi~ 364 (551)
...+++|+|.|||||||+.|+|.+... ..++.+|.||. ...+...+ .++.++|.||+.
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~--~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVL--GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT--TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCC--CCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence 457899999999999999999999872 46889999983 22333333 357789999999
Q ss_pred cCCCCCchhhhhhhHHHhhhhhhccccCcc
Q psy11743 365 DPKKQFRPLDKFGNSFLNRFQCSLVNSPVL 394 (551)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (551)
.-.....+ +|+.| ...++++|++
T Consensus 87 ~gA~~g~G---LGn~f----L~~ir~~d~l 109 (296)
T d1ni3a1 87 KGASTGVG---LGNAF----LSHVRAVDAI 109 (296)
T ss_dssp CCCCSSSS---SCHHH----HHHHTTCSEE
T ss_pred cccccccc---cHHHH----HHHhhcccee
Confidence 75533332 34434 4455666643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.98 E-value=2.9e-05 Score=71.08 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=40.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADMV 214 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl~ 214 (551)
..+.+|||||....... . ...+.+... .-..+-+++|+|+.. +... ...........+. --++++|.|..
T Consensus 95 ~d~IlIDTaGr~~~~~~-~----~~~~el~~~~~~~~~~~~~LVl~a~~-~~~~-~~~~~~~~~~~~~-~~lI~TKlDet 166 (211)
T d1j8yf2 95 MEIIIVDTAGRHGYGEE-A----ALLEEMKNIYEAIKPDEVTLVIDASI-GQKA-YDLASKFNQASKI-GTIIITKMDGT 166 (211)
T ss_dssp CSEEEEECCCSCCTTCH-H----HHHHHHHHHHHHHCCSEEEEEEEGGG-GGGH-HHHHHHHHHHCTT-EEEEEECTTSC
T ss_pred CceEEEecCCcCccchh-h----HHHHHHHHHHhhcCCceEEEEEeccc-Ccch-HHHHhhhhcccCc-ceEEEecccCC
Confidence 36999999997542110 0 011122221 235788999999984 3322 2233333333333 34679999987
Q ss_pred CH
Q psy11743 215 DH 216 (551)
Q Consensus 215 ~~ 216 (551)
..
T Consensus 167 ~~ 168 (211)
T d1j8yf2 167 AK 168 (211)
T ss_dssp SC
T ss_pred Cc
Confidence 64
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1.5e-05 Score=70.14 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=36.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc--ceEEEEecCCC--ccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD--RFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t--r~~~~~~~~~~--~~l~dt~gi~ 364 (551)
.++++++|.+||||||++|.+.+..+..- ..|... ....+..++.. +.+.||+|..
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~---~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~ 61 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWE---YDPTLESTYRHQATIDDEVVSMEILDTAGQE 61 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEETTEEEEEEEEECCCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCc---cCCceeccccccccccccceEEEEeeccccc
Confidence 46899999999999999999999875321 112211 12233444433 4568999864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.97 E-value=2.3e-06 Score=78.33 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=35.6
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEe--cCCCccccCCceee
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMY--DEREGSVPGNALVV 364 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~--~~~~~~l~dt~gi~ 364 (551)
+|+++|.||+||||++|.|.+..+.. ..+..+++....... .+..+.+.|+||..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~ 58 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRD--TQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 58 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC--BCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc--ccCCeeEEEEEEEEeeeeeeeeeeeeccccc
Confidence 68999999999999999999987532 222222222222111 24446678888853
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.96 E-value=2e-07 Score=85.47 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=29.2
Q ss_pred HhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 169 AERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 169 ~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
+...+..++++|+.. ........+.+.++..+.+++++.++++
T Consensus 81 ~~~~~~~~vi~d~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T d1bifa1 81 LSEEGGHVAVFDATN-TTRERRAMIFNFGEQNGYKTFFVESICV 123 (213)
T ss_dssp HHTTCCSEEEEESCC-CSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHhcCCCEEEeecCC-ccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence 444556677889985 4444445555666677888888888876
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.94 E-value=2.6e-06 Score=75.35 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=38.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
.++|+++|.+|||||||++.+.+..+.. ...+..+... ...+..++. .+.+.||+|...
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~-~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~ 64 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCc-cccccccceeeccccccccccccccccccCCchh
Confidence 3689999999999999999999887532 1222233221 223344443 466789998643
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=2.9e-05 Score=70.96 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=39.8
Q ss_pred CeEEEeCCCCCCCcccccccccchHHHHHHHHh-----ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCC
Q psy11743 138 GISIVDTPGILSGEKQRVDRGYDFTGVLEWFAE-----RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKAD 212 (551)
Q Consensus 138 ~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~-----~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~D 212 (551)
.+.||||||........++ -.+.+...++ ..+-+++|+|+.. +. ....+........+ .--++++|.|
T Consensus 93 d~ilIDTaGr~~~d~~~~~----el~~l~~~~~~~~~~~p~~~~LVl~a~~-~~-~~~~~~~~~~~~~~-~~~lIlTKlD 165 (211)
T d2qy9a2 93 DVLIADTAGRLQNKSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDAST-GQ-NAVSQAKLFHEAVG-LTGITLTKLD 165 (211)
T ss_dssp SEEEECCCCCGGGHHHHHH----HHHHHHHHHTTTCTTCCSEEEEEEEGGG-TH-HHHHHHHHHHHHSC-CCEEEEECCT
T ss_pred CEEEeccCCCccccHHHHH----HHHHHHHHHhhhcccCcceeeeehhccc-Cc-chHHHHhhhhhccC-CceEEEeecC
Confidence 5899999998653222111 1112222333 2568999999974 21 22233333333333 3457889999
Q ss_pred CCCH
Q psy11743 213 MVDH 216 (551)
Q Consensus 213 l~~~ 216 (551)
....
T Consensus 166 e~~~ 169 (211)
T d2qy9a2 166 GTAK 169 (211)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 8653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.8e-06 Score=76.56 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=32.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEEecCC--CccccCCceeec
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVMYDER--EGSVPGNALVVD 365 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~~~~~--~~~l~dt~gi~~ 365 (551)
-+|+++|.+||||||++|++.+..+..... +..+... ......++. .+.+.||+|-..
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~-~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 64 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-----CCEE-EETTEEEEEEEECBTTCCEEEEEEECTTHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccc-cceeccccccccccccccccccccccccccc
Confidence 379999999999999999999876432111 1111111 222333333 356779998554
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=1.4e-05 Score=71.37 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=35.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~ 364 (551)
.+|+++|.++|||||+++.++...+..... +..+.........++.. +.+.|++|-.
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 61 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYV-PTVFENYTASFEIDTQRIELSLWDTSGSP 61 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCC-CCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccC-CceeecccccccccceEEeeccccccccc
Confidence 478999999999999999999887642211 11112222233344444 3467888854
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=1.8e-05 Score=69.76 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=36.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecC--CCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDE--REGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~--~~~~l~dt~gi~~~ 366 (551)
.+|+++|.+||||||+++.+.+..+... ..+..+......+..++ ..+.+.|++|...-
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 65 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPD-YDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTT-CCTTCCEEEEEEEEETTEEEEEEEEECCSCGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc-cCcceeecccccccccccccccccccccccccc
Confidence 4789999999999999999998764321 11111112222233333 34557899987543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.88 E-value=2.5e-06 Score=75.80 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceeecC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
.+..+|+++|.+|||||||+|+|.+..+. .+.+..+.+. ..+.+++....+.|+++....
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 70 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG--QHVPTLHPTS-EELTIAGMTFTTFDLGGHIQA 70 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--------CCCCCSC-EEEEETTEEEEEEEECC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--ceecccccce-eEEEecccccccccccchhhh
Confidence 35789999999999999999999988743 2222222222 234445555666666665543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=6.5e-06 Score=78.69 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=71.6
Q ss_pred EEEEEeecCCChhHHHHHHHhCC----C-----CcccccCC------Cccc---ceEEEEecCCCccccCCceeecCCCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERD----F-----PGIHIGPE------PTTD---RFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~----~-----~~~~v~~~------~~~t---r~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
.|+++|..++|||||..+|+-.. . .+..+.+. -+.| ......|.+..+.++||||..+-.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~-- 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT-- 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS--
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH--
Confidence 69999999999999999997441 0 01122221 1111 134577899999999999987622
Q ss_pred CchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCCCCccchhhhhhhhhccCh
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQPLVHDVNRRLFEDRSSTS 433 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~~~~~~~~~~l~~~~~~~~ 433 (551)
..+.+++.-+| ...|...|+ .++|+++++||+|.+ ..++
T Consensus 86 ------------~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~-------------~ad~ 140 (276)
T d2bv3a2 86 ------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT-------------GADL 140 (276)
T ss_dssp ------------TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTST-------------TCCH
T ss_pred ------------HHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccccc-------------cccc
Confidence 33334444343 445655555 578999999999983 3445
Q ss_pred hhHHHHHHHHHH
Q psy11743 434 NSVQAYIISALR 445 (551)
Q Consensus 434 ~~~~~~~~~~l~ 445 (551)
.....++++.|.
T Consensus 141 ~~~l~ei~~~l~ 152 (276)
T d2bv3a2 141 WLVIRTMQERLG 152 (276)
T ss_dssp HHHHHHHHHTTC
T ss_pred chhHHHHHHHhC
Confidence 556777777775
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.84 E-value=2.6e-06 Score=82.03 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=48.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc---eEEEEecC-----------------CCccccCCceeecC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR---FIAVMYDE-----------------REGSVPGNALVVDP 366 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr---~~~~~~~~-----------------~~~~l~dt~gi~~~ 366 (551)
.+++++|.|||||||++|+|.+.+ +.++.+|-||- -..+...+ ..+.++|.||+..-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~---~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g 79 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC---CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence 589999999999999999999987 78888888882 12233322 23568899998842
Q ss_pred CCCCchhhhhhhHHHhhhhhhccccCccc
Q psy11743 367 KKQFRPLDKFGNSFLNRFQCSLVNSPVLK 395 (551)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (551)
. +.=+-+|+ ++.+.++++|++.
T Consensus 80 a---~~g~Glg~----~FL~~ir~~d~Li 101 (278)
T d1jala1 80 A---SKGEGLGN----KFLANIRETDAIG 101 (278)
T ss_dssp H---HHHGGGTC----CHHHHHHTCSEEE
T ss_pred c---ccCCCccH----HHHHHHHhccceE
Confidence 2 11122344 4455667777543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.83 E-value=6e-06 Score=72.41 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=35.4
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc-eEEEE--ecCCCccccCCceee
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR-FIAVM--YDEREGSVPGNALVV 364 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr-~~~~~--~~~~~~~l~dt~gi~ 364 (551)
.+|+++|.+||||||++|.+.+..+.... .+..+.+. ..... .......+.|++|..
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQE 62 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcc-CcccccccceeeeeeeccceEEEEEeccCch
Confidence 47999999999999999999988753222 12222222 22222 234455666777643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.79 E-value=2.3e-05 Score=71.53 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=40.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHH-----hccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFA-----ERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~-----~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~ 211 (551)
..+.||||||........++. ...+...+ ...+-+++|+|+.. +. ....+........+ +--++++|.
T Consensus 89 ~d~ilIDTaGr~~~d~~l~~e----l~~~~~~~~~~~~~~p~~~~LVl~a~~-~~-~~~~~~~~~~~~~~-~~~lI~TKl 161 (207)
T d1okkd2 89 YDLLFVDTAGRLHTKHNLMEE----LKKVKRAIAKADPEEPKEVWLVLDAVT-GQ-NGLEQAKKFHEAVG-LTGVIVTKL 161 (207)
T ss_dssp CSEEEECCCCCCTTCHHHHHH----HHHHHHHHHHHCTTCCSEEEEEEETTB-CT-HHHHHHHHHHHHHC-CSEEEEECT
T ss_pred CCEEEcCccccchhhHHHHHH----HHHHHHHhhhcccCCCceEEEEeeccc-Cc-hHHHHHHHhhhccC-CceEEEecc
Confidence 368999999987643221111 11122222 24678999999984 32 22233333333222 335689999
Q ss_pred CCCC
Q psy11743 212 DMVD 215 (551)
Q Consensus 212 Dl~~ 215 (551)
|...
T Consensus 162 Det~ 165 (207)
T d1okkd2 162 DGTA 165 (207)
T ss_dssp TSSC
T ss_pred CCCC
Confidence 9864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.75 E-value=6.5e-05 Score=68.49 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=40.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH--HhccCEEEEEEeCCCCCCChHHHHHHHHH-hCCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFRRSIEAL-RGHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~--~~~aD~il~VvDa~~~~~~~~~~~~l~~l-~~~~~~vilVlNK~Dl 213 (551)
..+.+|||||....... ..+.+... ....+-+++|+|+.. + ......+... ...+ .--++++|.|.
T Consensus 93 ~d~vlIDTaGr~~~d~~-------~~~el~~~~~~~~~~~~llv~~a~~-~--~~~~~~~~~f~~~~~-~~~~I~TKlDe 161 (207)
T d1ls1a2 93 RDLILVDTAGRLQIDEP-------LMGELARLKEVLGPDEVLLVLDAMT-G--QEALSVARAFDEKVG-VTGLVLTKLDG 161 (207)
T ss_dssp CCEEEEECCCCSSCCHH-------HHHHHHHHHHHHCCSEEEEEEEGGG-T--HHHHHHHHHHHHHTC-CCEEEEECGGG
T ss_pred Ccceeecccccchhhhh-------hHHHHHHHHhhcCCceEEEEecccc-c--hhHHHHHHHHHhhCC-CCeeEEeecCc
Confidence 46899999998763322 12222222 356789999999974 2 3333333322 2222 23478899997
Q ss_pred CCH
Q psy11743 214 VDH 216 (551)
Q Consensus 214 ~~~ 216 (551)
...
T Consensus 162 ~~~ 164 (207)
T d1ls1a2 162 DAR 164 (207)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=2e-05 Score=70.09 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=38.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCC--ccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDERE--GSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~--~~l~dt~gi~~ 365 (551)
..+|+++|.+||||||+++.+++..+.. ..+..+.+....+..++.. +.+.||+|...
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~ 64 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCC--CCCSSCEEEEEEEEETTEEEEEEEEECSSCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCC--cCCccceeEEEEeecCceEEEEEEeecccccc
Confidence 4689999999999999999999987532 1111122222234455544 45679998653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=97.71 E-value=2.5e-05 Score=74.27 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=64.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCC----CC-----cccccCC------Cccc---ceEEEEecCCCccccCCceeecCCCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERD----FP-----GIHIGPE------PTTD---RFIAVMYDEREGSVPGNALVVDPKKQ 369 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~----~~-----~~~v~~~------~~~t---r~~~~~~~~~~~~l~dt~gi~~~~~~ 369 (551)
.|+++|..+.|||||+.+|+... .. +..+.+. -+.| ......+.+..+.++||||-.+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d---- 79 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD---- 79 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG----
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh----
Confidence 58999999999999999997542 00 1111111 1122 1244678899999999999875
Q ss_pred CchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCC
Q psy11743 370 FRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQ 415 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~ 415 (551)
|.....+++.-+| ...|...|+ ..++.++++||+|.
T Consensus 80 ----------F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~ 131 (267)
T d2dy1a2 80 ----------FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 131 (267)
T ss_dssp ----------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred ----------hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccc
Confidence 4455666666555 345666665 45788999999997
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.66 E-value=4.1e-05 Score=70.14 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=39.7
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHH---Hh-----ccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEE
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWF---AE-----RVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVL 208 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~---~~-----~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVl 208 (551)
..+.||||||....... ....+... +. ..+-+++|+|+.. + .....++....... ..--+++
T Consensus 94 ~d~ilIDTaGr~~~d~~-------~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~-~-~~~~~~~~~~~~~~-~~~~lI~ 163 (213)
T d1vmaa2 94 KDVVIIDTAGRLHTKKN-------LMEELRKVHRVVKKKIPDAPHETLLVIDATT-G-QNGLVQAKIFKEAV-NVTGIIL 163 (213)
T ss_dssp CSEEEEEECCCCSCHHH-------HHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHHS-CCCEEEE
T ss_pred CCEEEEeccccccchHH-------HHHHHHHHHhhhhhccccccceeEEeecccc-C-cchhhhhhhhcccc-CCceEEE
Confidence 35899999998763322 22233332 22 2577999999973 2 12222333333333 2445788
Q ss_pred cCCCCCC
Q psy11743 209 NKADMVD 215 (551)
Q Consensus 209 NK~Dl~~ 215 (551)
+|.|...
T Consensus 164 TKlDe~~ 170 (213)
T d1vmaa2 164 TKLDGTA 170 (213)
T ss_dssp ECGGGCS
T ss_pred ecccCCC
Confidence 9999864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00016 Score=70.71 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.+.++|+|.|.||+||||++|.|...
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999744
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00018 Score=68.55 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=53.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCCCCCCCCC--CCccceEEEEEeCCCccccCCCCcccccccccccccceeEEecCCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDFPGIHIGP--EPTTDRFIAVMYDEREGSVPFSPLDKFGKFGNSFLNRFQCSLVNSP 134 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~~~~~~~~--~~tt~~~~~i~~~~~~~~i~g~~~~~~~~~g~~~~~~~~~~~~~~~ 134 (551)
..|+|+|+.++|||+|+|.|+|... +...++ .++|.-+-. ...+ .+..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~-~f~~~~~~~~~T~Giw~-~~~~----------------------------~~~~ 82 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK-GFSLGSTVQSHTKGIWM-WCVP----------------------------HPKK 82 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS-CSCCCCSSSCCCCSEEE-EEEE----------------------------CSSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC-CCccCCCCCCCCCceEE-EEee----------------------------ccCC
Confidence 4799999999999999999999764 233333 344443311 1000 0000
Q ss_pred CccCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCC
Q psy11743 135 VLKGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAH 182 (551)
Q Consensus 135 ~l~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~ 182 (551)
--..+.++||.|+.+.... +..++ .+...-++--|+++|+-+...
T Consensus 83 ~~~~~~~lDteG~~~~~~~--~~~~~-~~i~~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 83 PGHILVLLDTEGLGDVEKG--DNQND-SWIFALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp TTCEEEEEEECCBCCGGGC--CCTTH-HHHHHHHHHHCSEEEEEEESC
T ss_pred CCceEEEEecccccccccc--cchhH-HHHHHHHHHHhCEEEEecccc
Confidence 0034899999999874321 11111 223333456788777766543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.35 E-value=6e-05 Score=74.04 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=57.9
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCC---------------Cccc-c--eEEEEe----------------cCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPE---------------PTTD-R--FIAVMY----------------DER 353 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~---------------~~~t-r--~~~~~~----------------~~~ 353 (551)
.|+++|..+.|||||+.+|+... |...... -|.| + .....+ .+.
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~--g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 96 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRA--GIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 96 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHH--BCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHC--CCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence 49999999999999999998442 1111111 1112 1 111211 223
Q ss_pred CccccCCceeecCCCCCchhhhhhhHHHhhhhhhccccC-------ccccccccc---------ccceeEEEecccCC
Q psy11743 354 EGSVPGNALVVDPKKQFRPLDKFGNSFLNRFQCSLVNSP-------VLKGKVLQT---------PEVARVYIGSFWDQ 415 (551)
Q Consensus 354 ~~~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~v~~~~~wd~ 415 (551)
.+.++||||-.+- .....+++.-+| +..|...|+ .+++.|+++||||.
T Consensus 97 ~inliDtPGh~dF--------------~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr 160 (341)
T d1n0ua2 97 LINLIDSPGHVDF--------------SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 160 (341)
T ss_dssp EEEEECCCCCCSS--------------CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred EEEEEcCCCcHHH--------------HHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECccc
Confidence 4788999998762 244455555454 567877776 45778999999998
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.34 E-value=2.5e-05 Score=72.65 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEeecCCChhHHHHHHHh
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~ 328 (551)
-++++|.+|+|||||++.|+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 478999999999999999984
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.30 E-value=0.00016 Score=64.76 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=34.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCCccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
-++++++|.+||||||+++.+.... ...|+.. ....+......+.+.|++|....
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f~~------~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~ 57 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRIIH------GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSE 57 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH------SCCCCSSEEEEEEEETTEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC------CCCCeeeeEEEEEeeeeeeeeeecccceeee
Confidence 4689999999999999999993221 1122111 12234556777888899997643
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=97.04 E-value=0.00041 Score=67.49 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=22.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+.++|+|.|.||+||||+++.|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999854
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.79 E-value=0.00083 Score=59.38 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=36.3
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccceEEEEecCCCccccCCceee
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRFIAVMYDEREGSVPGNALVV 364 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~~~~~~~~~~~~l~dt~gi~ 364 (551)
..+++++|..||||||+++.+....++..-+ ....+......+.+.||+|-.
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~-------~~~~~~~~~~~~~i~D~~Gq~ 53 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGI-------VETHFTFKDLHFKMFDVGGQR 53 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHSCCCSE-------EEEEEEETTEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCccE-------EEEEEEeeeeeeeeecccccc
Confidence 3689999999999999999998765431110 122344556667788888854
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.00034 Score=60.53 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.|.++|+|.+|||||||+++|+..
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999999999964
|
| >d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Probable GTPase Der, C-terminal domain family: Probable GTPase Der, C-terminal domain domain: Probable GTPase Der, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.75 E-value=0.00061 Score=51.82 Aligned_cols=63 Identities=13% Similarity=-0.007 Sum_probs=49.0
Q ss_pred hhhhhhHHHHHHHhhhcCCCC-------ccccCCCcEEEEEeecCCC-hhHHHHHHHhC------CCCcccccCCCc
Q psy11743 279 AALRKLNDLIKRARLAKAPYE-------DADFDAKPTVMLVGQYSTG-KTTFIRYLLER------DFPGIHIGPEPT 341 (551)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~g-Kss~~n~l~~~------~~~~~~v~~~~~ 341 (551)
+++++||+++..+...++|+. .|+...||+|+++|+.... +.+|.+||.++ ++.|+|+.....
T Consensus 2 i~T~~LN~~l~~~~~~~pppk~~Ki~Y~tQ~~~~PPtf~if~N~~~~~~~sY~ryL~n~lR~~~f~~~G~Pi~l~fr 78 (81)
T d1mkya3 2 VPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFK 78 (81)
T ss_dssp CCHHHHHHHHHHHHTTCCCSTTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCceeEEEEEEcCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHHhCCCCccCEEEEEE
Confidence 467889999999988888874 3888999999999987655 88888888755 556777665443
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.00044 Score=64.36 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=59.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhCC----------------------CCcc------cccCCCccc---ceEEEEecCCCc
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERD----------------------FPGI------HIGPEPTTD---RFIAVMYDEREG 355 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~----------------------~~~~------~v~~~~~~t---r~~~~~~~~~~~ 355 (551)
+.|+++|....||||++-+|+-.. +... +.....|.| ......+.+..+
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 86 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 86 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence 589999999999999999986320 0000 111112333 244567788999
Q ss_pred cccCCceeecCCCCCchhhhhhhHHHhhhhhhccccCcc-------ccc-------cccc---------cccee-EEEec
Q psy11743 356 SVPGNALVVDPKKQFRPLDKFGNSFLNRFQCSLVNSPVL-------KGK-------VLQT---------PEVAR-VYIGS 411 (551)
Q Consensus 356 ~l~dt~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------~~~~---------~~~~~-v~~~~ 411 (551)
.++||||-.+ |.....+++..+|.. .|. .-|+ ..++. |+++|
T Consensus 87 ~iiDtPGH~d--------------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iN 152 (239)
T d1f60a3 87 TVIDAPGHRD--------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 152 (239)
T ss_dssp EEEECCCCTT--------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEECCCcHH--------------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEE
Confidence 9999999764 445555666666632 231 1233 34555 55699
Q ss_pred ccCC
Q psy11743 412 FWDQ 415 (551)
Q Consensus 412 ~wd~ 415 (551)
|+|+
T Consensus 153 KmD~ 156 (239)
T d1f60a3 153 KMDS 156 (239)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 9998
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0026 Score=55.08 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=38.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEEEEEcCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIRIVLNKADM 213 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vilVlNK~Dl 213 (551)
..+.++|..|...... ..+.......+..++.+++..+... .. ....+++.+.+.....++.+++.+.
T Consensus 106 ~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~lt~~~R 173 (189)
T d2i3ba1 106 QRVCVIDEIGKMELFS------QLFIQAVRQTLSTPGTIILGTIPVP-KG--KPLALVEEIRNRKDVKVFNVTKENR 173 (189)
T ss_dssp CCCEEECCCSTTTTTC------SHHHHHHHHHHHCSSCCEEEECCCC-CS--SCCTTHHHHHTTCCSEEEECCSSSG
T ss_pred CCeeEeeccccchhhh------HHHHHHHHHHhccCceEEEeccccC-Cc--chHHHHHHHhCCCCCeEEEEChhHh
Confidence 5578889888765321 1234455566677777776654432 11 1123445555555556778888764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.51 E-value=0.0057 Score=53.86 Aligned_cols=55 Identities=20% Similarity=0.124 Sum_probs=37.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCCccccCCceeec
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPGNALVVD 365 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~~~l~dt~gi~~ 365 (551)
..+++++|..||||||+++.+....+.. .|+.. ....+......+.+.|++|...
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~~~-----~pTiG~~~~~~~~~~~~~~~~d~~g~~~ 57 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHGSG-----VPTTGIIEYPFDLQSVIFRMVDVGGQRS 57 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTSSC-----CCCCSCEEEEEECSSCEEEEEECCCSTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCC-----CceeeEEEEEEeccceeeeecccccccc
Confidence 3589999999999999999998776532 22211 1233445566677788888653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=96.45 E-value=0.00068 Score=59.20 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
+|+|+|++|+|||||++.+++.-
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l 24 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcC
Confidence 69999999999999999999854
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.19 E-value=0.0012 Score=57.08 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
|..|+|+|+|.+||||||+.++|..+
T Consensus 2 m~~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 2 MLLPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999765
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=95.99 E-value=0.0049 Score=57.18 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHh
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~ 328 (551)
.+.|+++|....|||||+.+|+.
T Consensus 24 ~iNi~iiGHVD~GKSTL~~~Ll~ 46 (245)
T d1r5ba3 24 HVNIVFIGHVDAGKSTLGGNILF 46 (245)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHH
T ss_pred ceEEEEEeeCCCCHHHHHHHHHH
Confidence 34699999999999999999963
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.99 E-value=0.0024 Score=58.27 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=37.1
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCCCCcccccCCCccc-ceEEEEecCCCccccCCceeecC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTD-RFIAVMYDEREGSVPGNALVVDP 366 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~t-r~~~~~~~~~~~~l~dt~gi~~~ 366 (551)
..+|+++|..||||||+++.+....+ + |.+. ....+..++..+.+.|++|....
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~--~-----pTiG~~~~~~~~~~~~~~~~D~~Gq~~~ 60 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV--V-----LTSGIFETKFQVDKVNFHMFDVGGQRDE 60 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC--C-----CCCSCEEEEEEETTEEEEEEECCCSTTT
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc--C-----CCCCeEEEEEEECcEEEEEEecCcccee
Confidence 35899999999999999999865542 1 2111 12234556777788898886543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.92 E-value=0.0094 Score=51.90 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.+..|+++|.+||||||+...|+..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.86 E-value=0.0015 Score=56.76 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
-+|+|+|.+|||||||.++|...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.61 E-value=0.0029 Score=53.41 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=20.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..|+++|.|||||||+.+.|+...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999997654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.56 E-value=0.0029 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.+.|+|.+|||||||+++|+.+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.52 E-value=0.0036 Score=58.34 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=31.3
Q ss_pred hccCCccCCCCCCccc--cCCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 37 AYHFHDFHSPPYEDAD--FDAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 37 ~~~~~~~~~~~l~~~~--~~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.|.|..-..+.+.+-+ +...-.++|+|++|+|||||++.|+|--
T Consensus 20 sf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 20 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp EECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 3555443334454443 3455689999999999999999999864
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.48 E-value=0.0049 Score=56.26 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.0
Q ss_pred cEEEEEeecCCChhHHHHHHHh
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLE 328 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~ 328 (551)
+.|+++|....|||||+-+|+.
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0031 Score=58.30 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.|+|+|++|+|||||++.|+|--
T Consensus 27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 27 KQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456789999999999999999999965
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=95.23 E-value=0.0039 Score=57.68 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=26.6
Q ss_pred CCCccc--cCCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 47 PYEDAD--FDAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 47 ~l~~~~--~~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.+.+-. +...-.|+|+|++|+|||||++.|+|--
T Consensus 17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 444433 3455689999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.21 E-value=0.0036 Score=56.22 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
...-.++|+|++|+|||||++.|+|--.
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~ 52 (200)
T d1sgwa_ 25 EKGNVVNFHGPNGIGKTTLLKTISTYLK 52 (200)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcccc
Confidence 4556899999999999999999998653
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.18 E-value=0.0031 Score=58.83 Aligned_cols=44 Identities=25% Similarity=0.451 Sum_probs=32.7
Q ss_pred hccCCccCCCCCCccc--cCCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 37 AYHFHDFHSPPYEDAD--FDAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 37 ~~~~~~~~~~~l~~~~--~~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.|.|..-..+.+.+-+ +...-.|+|+|++|+|||||++.|+|-.
T Consensus 23 sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 23 SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp EECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 4566554455555543 3455699999999999999999998854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.17 E-value=0.0041 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..|+|+|.+||||||+.+.|...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.15 E-value=0.0049 Score=58.35 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.|+|+|++|+|||||++.|+|.-
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 455689999999999999999999965
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.0051 Score=56.36 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++++|++|+|||||++.|.|-.
T Consensus 24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345689999999999999999999865
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.0046 Score=57.56 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|+|--
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 455689999999999999999999865
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.08 E-value=0.02 Score=51.78 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=45.5
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCcEE-EEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKIR-IVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~vi-lVlNK~Dl~~ 215 (551)
..+.++|||+-.. ......+..+|.+++++.+.. .......+.++.+++.+.|++ +|+|+.+...
T Consensus 112 ~d~IiiD~~~~~~-------------~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~ 177 (237)
T d1g3qa_ 112 FDFILIDCPAGLQ-------------LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp CSEEEEECCSSSS-------------HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred CCEEEEccccccc-------------ccchhhhhhhhcccccccccc-eecchhhHHHHHHhhhhhhhhhhhhccccccc
Confidence 3689999987543 124455778999999998863 222333566677777788865 8999998754
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.07 E-value=0.075 Score=47.56 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=42.1
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHhCCCCc-EEEEEcCCCCCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDK-IRIVLNKADMVD 215 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~~-vilVlNK~Dl~~ 215 (551)
..++++|||+... ......+..+|.+++|.++.. .......+.+..+.+.+.+ +-+|+|+.+...
T Consensus 110 ~D~viiD~~~~~~-------------~~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 175 (232)
T d1hyqa_ 110 TDILLLDAPAGLE-------------RSAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERLGTKVLGVVVNRITTLG 175 (232)
T ss_dssp CSEEEEECCSSSS-------------HHHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred cceeeeccccccc-------------chhHHHhhhhheeeeeccccc-cchhhhhhhhhhhhhccccccccccccccccc
Confidence 3589999998653 122345667999999998763 1112223344445555555 447899998655
Q ss_pred HHH
Q psy11743 216 HQQ 218 (551)
Q Consensus 216 ~~~ 218 (551)
.+.
T Consensus 176 ~~~ 178 (232)
T d1hyqa_ 176 IEM 178 (232)
T ss_dssp HHH
T ss_pred ccc
Confidence 443
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.00 E-value=0.0067 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
....|+|.|.+||||||+.++|...-
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999998763
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.94 E-value=0.0055 Score=56.13 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCcchhhHhccCCC
Confidence 455689999999999999999998865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0047 Score=56.76 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.7
Q ss_pred cCCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 53 FDAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 53 ~~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..+.-.++|+|++|+|||||++.|.|-
T Consensus 22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 22 VRAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345678999999999999999999984
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.92 E-value=0.0062 Score=56.05 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
...-.++++|++|+|||||++.|.|-..
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~ 57 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTLRMIAGLEE 57 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3456899999999999999999999753
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=94.88 E-value=0.0057 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++++|++|+|||||++.|+|-.
T Consensus 30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345689999999999999999999975
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.87 E-value=0.0054 Score=52.86 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
|+|+++|.+||||||+.+.|..+
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 77999999999999999998754
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.87 E-value=0.0066 Score=53.21 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.|+|+|++||||||+++.|..+.
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999998764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0082 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.|+|+|++|+|||||+++|+.+.
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred cEEEECCCCCCHHHHHHHHHHhC
Confidence 48889999999999999999754
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.75 E-value=0.0087 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...|+|+|.+||||||+.+.|..+
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=94.74 E-value=0.0051 Score=56.23 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=24.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++++|++|+|||||++.|.|-.
T Consensus 24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 455689999999999999999999975
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.74 E-value=0.0079 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
++.|+|+|+|||||||+.+.|...
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357799999999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.70 E-value=0.0076 Score=55.40 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
-.++++|++|+|||||++.|.|-.
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCChHHHHHHHHHcCC
Confidence 478899999999999999999965
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=94.66 E-value=0.0078 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.8
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++++|++|+|||||++.|.|-.
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345689999999999999999999875
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0092 Score=56.27 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=41.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCC-cccceEEEE---e---cCCCccccCCceeecCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEP-TTDRFIAVM---Y---DEREGSVPGNALVVDPK 367 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~-~~tr~~~~~---~---~~~~~~l~dt~gi~~~~ 367 (551)
-|+++|...+|||+++|.|++... +..++... .+|+.+.+. + .+..+.++||.|..++.
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~-~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~ 99 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKK-GFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 99 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS-CSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-CCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence 578999999999999999999864 45555543 345554321 1 23346788999998765
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0077 Score=55.44 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 345689999999999999999999865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=94.58 E-value=0.0082 Score=55.29 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=24.3
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
...-.++|+|+.|+|||||+|.|+|...
T Consensus 26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~ 53 (238)
T d1vpla_ 26 EEGEIFGLIGPNGAGKTTTLRIISTLIK 53 (238)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999999999763
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.0088 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..|+|+|++|||||||+++|+...
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.51 E-value=0.011 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHh
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
.+..|+|.|.+|||||||.++|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999975
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.42 E-value=0.0085 Score=55.76 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++++|++|+|||||++.|+|-.
T Consensus 28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 28 NKGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 345689999999999999999999975
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.0085 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.+..+++||++|||||+++..|..+-
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHH
Confidence 45679999999999999999988753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.049 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+.-+++.|+||+|||+++++|...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 356999999999999999999865
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.30 E-value=0.01 Score=51.29 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.3
Q ss_pred EEEEEeccCCChHHHHHHHHh
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg 78 (551)
.|+|.|.+||||||+.+.|..
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=94.30 E-value=0.0094 Score=55.55 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.9
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 26 RAGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 455689999999999999999999865
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.29 E-value=0.012 Score=50.41 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
....|.|+|.+||||||+.+.|..+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467889999999999999988754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.0084 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEeccCCChHHHHHHHHhcC
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
|+|+|++|||||||+++|+.+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.025 Score=52.77 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=22.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.+..+++||++|||||+++..|..+-
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999998753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.22 E-value=0.013 Score=50.16 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.5
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.-.|+|+|.+||||||+.+.|..+
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999988764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.20 E-value=0.011 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+.+|+|+|++|+||||+.+.|..+
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.08 E-value=0.018 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
--|++.|+||+|||||..+|.+.-
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.04 E-value=0.0074 Score=55.57 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
...-.++|+|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 445689999999999999999999965
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.014 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.7
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..+.|+|+|+|||||||+...|...
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999875
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.012 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+++|+|+|+|||||||....|...
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.014 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.|+|+|.+||||||+...|..+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5888899999999999999765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.79 E-value=0.015 Score=50.44 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+|+|+|+|||||||+.+.|..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.013 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
|.++|+|.+|+||||++|.|+.+
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.016 Score=49.48 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...++|+|.+||||||+.+.|..+
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999998765
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=93.69 E-value=0.016 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.720 Sum_probs=20.8
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+|+++|+||+||||+++.|.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhc
Confidence 6899999999999999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.68 E-value=0.018 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..+|+|+|+|||||||....|..+
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.65 E-value=0.012 Score=51.96 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...+.|+|+|+|||||||+...|..+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999875
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.62 E-value=0.022 Score=50.21 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.4
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+..+|+|+|+|||||||+...|..+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999865
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.58 E-value=0.016 Score=55.84 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcC
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.|+|+|.+|+|||||+|+|++.-
T Consensus 168 nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEeeccccchHHHHHHhhhc
Confidence 48999999999999999999753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.018 Score=51.43 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
++.|+|.|.+|||||||.+.|...
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.015 Score=52.18 Aligned_cols=52 Identities=13% Similarity=0.002 Sum_probs=32.0
Q ss_pred cEEEEEeecCCChhHHHHHHHhCCCCcc-cccCCCcccceEE-EEecCCCccccC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLERDFPGI-HIGPEPTTDRFIA-VMYDEREGSVPG 359 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~~~~~~-~v~~~~~~tr~~~-~~~~~~~~~l~d 359 (551)
..|+++|++||||+|+++.|+...- .. .....+.|||... -+.++..+.+++
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p-~~~~~~~is~TTR~~R~~E~~G~dY~Fvs 56 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPRPGEVHGEHYFFVN 56 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCCTTCCBTTTBEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC-ccCceEEEEEeccCCCccccccccceeec
Confidence 4688999999999999999997731 11 2223455666322 223344444443
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.36 E-value=0.019 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+|+|+|+|||||||+.+.|..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988865
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.22 E-value=0.021 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.+-+++.|+||+||||+.+.+.+.-
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4668999999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.11 E-value=0.023 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.8
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.|+|.|.+||||||+++.|...
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999653
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.10 E-value=0.016 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.8
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+|+|+|.||+||||+.+.|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999876
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.06 E-value=0.021 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEeccCCChHHHHHHHHhcC
Q psy11743 59 VMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
|+|+|++|||||||.++|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7799999999999999998764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.05 E-value=0.062 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..+.+++.|++|+||||++.+|.+.-
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.97 E-value=0.023 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
|..|+++|.||+||||+.+.|...
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999854
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.87 E-value=0.046 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=20.9
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.+..+++||.+|||||+++..|..+
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHHHH
Confidence 4456899999999999999877764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.027 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+|+|+|+|||||||..+.|..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.82 E-value=0.026 Score=48.95 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+|+|+|+|||||||+.+.|...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.79 E-value=0.07 Score=48.97 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=33.6
Q ss_pred ChhHHHHHHHHHHHHHhhcccchhhhccCCccCCCCCCccccCCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 12 SPEMYETVLEGLKKVYKNKLLPLEQAYHFHDFHSPPYEDADFDAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 12 ~~~~~~~~~~~l~~ly~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..+.++.+++.++.+..... .. ...+.-.|++.|++|+|||++.++|.+.
T Consensus 14 ~~~~i~~i~~~~~~~~~~~~----~~--------------~~~p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 14 WGDPVTRVLDDGELLVQQTK----NS--------------DRTPLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp CSHHHHHHHHHHHHHHHHHH----HC--------------SSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHh----cc--------------CCCCCeEEEEECcCCCCHHHHHHHHhhc
Confidence 34677888888775543321 00 0011235999999999999999999875
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.66 E-value=0.021 Score=48.56 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
-|.|++.|.||+||||+.+.|..+
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999999765
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.62 E-value=0.027 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.62 E-value=0.03 Score=47.74 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
++..|++.|.||+||||+.+.|..+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.49 E-value=0.031 Score=48.55 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.+|+|+|++||||||+...|..+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.018 Score=50.30 Aligned_cols=23 Identities=43% Similarity=0.322 Sum_probs=19.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..|.++|.+||||||+.+.|..+
T Consensus 20 ~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 20 CTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999653
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.39 E-value=0.034 Score=48.71 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.+|+.|+++|.||+||||+...|...
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46778899999999999999999765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.38 E-value=0.032 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.|.|+|.|+|||||||.-..|..+-
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999988753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.042 Score=47.79 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=32.3
Q ss_pred EEEEEeecCCChhHHHHHHHhCCCCcccccCCCcccce-EEEEecCCCccccC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDRF-IAVMYDEREGSVPG 359 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr~-~~~~~~~~~~~l~d 359 (551)
.|+++|++|+||+|+++.|+.+.- ..-....+.|||. ..-+.++..+.|++
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~~-~~~~~~v~~TTR~~R~~E~~G~dY~Fvs 56 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKHP-DRFAYPIPHTTRPPKKDEENGKNYYFVS 56 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT-TTEECCCCEECSCC---CCBTTTBEECC
T ss_pred cEEEECCCCCCHHHHHHHHHHhCC-cCeeeccccccCCCCCccccCccceeee
Confidence 488999999999999999996631 1222334666763 33444566665543
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.10 E-value=0.04 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.0
Q ss_pred CCEEEEEeccCCChHHHHHHHHh
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
+..|+|+|.+||||||+.+.|-.
T Consensus 3 p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999998854
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.08 E-value=0.033 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|++|+++|.||+||||+...|..+
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998766
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.06 E-value=0.026 Score=48.22 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.9
Q ss_pred cEEEEEeecCCChhHHHHHHHhC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
|+|+++|.||+||||+.+.|..+
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999766
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=92.03 E-value=0.17 Score=46.41 Aligned_cols=74 Identities=8% Similarity=0.069 Sum_probs=40.3
Q ss_pred cCeEEEeCCCCCCCcccccccccchHHHHHHHHhccCEEEEEEeCCCCCCChHHHHHHHHHh---C-CCCc-EEEEEcCC
Q psy11743 137 KGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALR---G-HDDK-IRIVLNKA 211 (551)
Q Consensus 137 ~~~~lIDTPGi~~~~~~~~~~~~~~~~~~~~~~~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~-~~~~-vilVlNK~ 211 (551)
..+.++|||+-.... ..........||.+++++++....+ .....++..+. . .+.+ .-+|+|+.
T Consensus 116 ~D~viiD~p~~~~~~----------~~~~~~~~~~ad~vliv~~~~~~sl-~~~~~~~~~i~~~~~~~~~~~~~vv~N~~ 184 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCG----------GFAMPIREGKAQEIYIVASGEMMAL-YAANNISKGIQKYAKSGGVRLGGIICNSR 184 (269)
T ss_dssp CSEEEEEEECSSCST----------TTTHHHHTTSCCEEEEEECSSHHHH-HHHHHHHHHHHHHBTTBBCEEEEEEEECC
T ss_pred CCEEEeccCCccchh----------HHHHHHHhhccCceeeccchhhhHH-HHHHHHHHHHHhhccccceeccceEEeee
Confidence 358999998754321 1112223356899999988763111 11123333332 2 2333 33788999
Q ss_pred CCCCHHHHHH
Q psy11743 212 DMVDHQQLMR 221 (551)
Q Consensus 212 Dl~~~~~~~~ 221 (551)
+.....+..+
T Consensus 185 ~~~~~~~~~~ 194 (269)
T d1cp2a_ 185 KVANEYELLD 194 (269)
T ss_dssp SSSCCHHHHH
T ss_pred cCCCccchhh
Confidence 9877554433
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.94 E-value=0.022 Score=49.59 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.6
Q ss_pred cEEEEEeecCCChhHHHHHHHhC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..|+++|++|+||||+++.|...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999999876
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.85 E-value=0.039 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
+-+++.|+||+||||+.+.|...-
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHhcc
Confidence 568999999999999999988653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.77 E-value=0.039 Score=48.35 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..|+|-|..||||||+++.|...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988754
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.70 E-value=0.04 Score=47.30 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.1
Q ss_pred EEEEeccCCChHHHHHHHHhc
Q psy11743 59 VMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 59 V~ivG~~n~GKSTLiN~Llg~ 79 (551)
|+++|.+||||||+.+.|..+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999998653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.65 E-value=0.051 Score=48.50 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.4
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
|.+.+|+|-|++||||||.-..|..+
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34578899999999999999998865
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.37 E-value=0.053 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.|.+++.|++|+||||++..|...
T Consensus 45 ~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 45 MPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999875
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.21 E-value=0.061 Score=49.10 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
...++|.|++|+||||++++|...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.12 E-value=0.1 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|..|+|-|.+|+||||+.++|...
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4667889999999999999999754
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.12 E-value=0.049 Score=50.13 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.-|++.|++|+|||++.++|.++-
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEecCCCCChhHHHHHHHHHc
Confidence 459999999999999999999754
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.058 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.6
Q ss_pred CCCCEEEEEeccCCChHHHHHHHHh
Q psy11743 54 DAKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 54 ~~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
..++.|+|.|.+|||||||.+.|..
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 4567899999999999999888764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.87 E-value=0.086 Score=45.43 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=22.1
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..|.-|+++|.||+||||+.+.|+..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45668889999999999999988755
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.83 E-value=0.059 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
++.|+|+|.+||||||+.+.|-..
T Consensus 3 k~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 3 RYIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEEEECCCcCCHHHHHHHHHHC
Confidence 468999999999999999988643
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.80 E-value=0.14 Score=46.73 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.|.-+.+.|+||+||||+.+.|.+.-
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45568899999999999999998873
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.76 E-value=0.037 Score=52.06 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=18.5
Q ss_pred CCCEEEEEeccCCChHHHHHHHHh
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
..|.|+|.|.+||||||+.++|..
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999998764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.65 E-value=0.06 Score=46.88 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+.++|+|+|.||+||||..+.|..+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999865
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.24 E-value=0.037 Score=48.41 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=24.9
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 344 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr 344 (551)
|+++|++|+||+|+++.|+.+.- .......+.|||
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~-~~~~~~~~~TTR 38 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP-DSFGFSVSSTTR 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT-TTEEECCEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-cceeEEEeeccC
Confidence 78999999999999999987731 122233345555
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=90.21 E-value=0.058 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhHHHHHHHhCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
-|++.|.||+||||+.+.|....
T Consensus 4 lIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47789999999999999997654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.17 E-value=0.08 Score=47.20 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
....|.+.|.+|+||||+.+.|..+
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999753
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.14 E-value=0.062 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.9
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
|+.|+|+|.||+||||....|...
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.11 E-value=0.059 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
-++|+|.+|+||||+++.|+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3679999999999999998765
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.93 E-value=0.087 Score=48.04 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..|+|.|++|+|||||+++++...
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHC
Confidence 468899999999999999988643
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.93 E-value=0.061 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|++.|.||+||||+.+.|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.74 E-value=0.14 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.++.+.+.|+||+||||+++.+.+.
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999876
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.54 E-value=0.083 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
|.+++.|++|+||||++..|..+
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999999875
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.38 E-value=0.054 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.+.+.|+||+||||++++++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 3556799999999999999865
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.25 E-value=0.1 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.-|++.|++|+|||++++++.+.-
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeEEecCCCCCchHHHHHHHHHh
Confidence 459999999999999999999864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.22 E-value=0.1 Score=45.66 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.+..+|+++|.||+||||+...|..+
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999876
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.08 E-value=0.095 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
++..|.++|.||+||||+.+.|..+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999855
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.98 E-value=0.1 Score=46.15 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.1
Q ss_pred CEEEEEeccCCChHHHHHHHH
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLL 77 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Ll 77 (551)
..|+|+|..||||||+.+.|-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999775
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.92 E-value=0.19 Score=45.51 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=24.0
Q ss_pred cCCCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 303 FDAKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 303 ~~~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
....+.+++.|+||+||||+++.|.+.-
T Consensus 49 ~~~~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 49 SGVFRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp TTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3455689999999999999999999874
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.85 E-value=0.083 Score=43.87 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|+++|.||+||||+.+.|..+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4788899999999999999876
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.82 E-value=0.098 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
+.-|+++|+||||||.|.++|.+.-
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3458999999999999999998753
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.66 E-value=0.089 Score=46.60 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.2
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.-.++++|++|+||||+++.|.|--
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 27 GNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhccc
Confidence 4468999999999999999999873
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.63 E-value=0.096 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+|+++|.||+||||+.+.|..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999766
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=88.62 E-value=0.094 Score=47.90 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++|+|++|+||||+++.|.|--
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 35589999999999999999999873
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.49 E-value=0.18 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.7
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
++.+.|.|+||+||||+.+.|.+.
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHhc
Confidence 457899999999999999999877
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.49 E-value=0.029 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.0
Q ss_pred CEEEEEeccCCChHHHHHHHH
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLL 77 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Ll 77 (551)
...+|+|+.|+||||++.+|.
T Consensus 25 ~~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 25 LVTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHHSCCSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999985
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=88.43 E-value=0.11 Score=43.85 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred cEEEEEeecCCChhHHHHHHHhC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
-.|++.|.||+||||+.+.|..+
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999876
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.41 E-value=0.085 Score=46.15 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=25.1
Q ss_pred EEEEeecCCChhHHHHHHHhCCCCcccccCCCcccc
Q psy11743 309 VMLVGQYSTGKTTFIRYLLERDFPGIHIGPEPTTDR 344 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~~~~~~~v~~~~~~tr 344 (551)
|+++|++|+||+|+.+.|+... +.......+.|||
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~-~~~~~~~~~~TTR 37 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH-SSIFGFSVSHTTR 37 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-TTTEEECCCEECS
T ss_pred EEEECCCCCCHHHHHHHHHHhC-CCceeEEEEEecc
Confidence 7899999999999999998762 1122334455555
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.39 E-value=0.12 Score=46.19 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.5
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
|.+++.|++|+||||++..|..+
T Consensus 36 ~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 36 PHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHH
Confidence 45889999999999999999875
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=88.22 E-value=0.12 Score=43.60 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.+.-++++|.||+||||+.+.|..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556778999999999999999876
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=88.12 E-value=0.11 Score=47.54 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+.-.++++|++|+||||+++.|.|-
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999987
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.99 E-value=0.12 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
|.+++.|++|+||||+.+.|...
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHHH
Confidence 45899999999999999988754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.85 E-value=0.097 Score=47.44 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=20.7
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+.+++.|++|+||||++.+++..
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999875
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.75 E-value=0.11 Score=48.05 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..|++.|++|+|||+|++++.+.-
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 469999999999999999998864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.73 E-value=0.15 Score=47.62 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|++|+||||+++.|+|--
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45589999999999999999999873
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.67 E-value=0.11 Score=44.30 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|+|.|.||+||||+.+.|..+
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999654
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.53 E-value=0.15 Score=46.84 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|++|+||||+++.|+|--
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhccc
Confidence 34589999999999999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.43 E-value=0.14 Score=46.66 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.-.++++|++|+||||++|.|.|-.
T Consensus 32 Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 32 GEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4579999999999999999999873
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.43 E-value=0.15 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.|+|-|..||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.41 E-value=0.15 Score=44.48 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+++.|.++|.||+||||+...|..+
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4667899999999999999999876
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.39 E-value=0.13 Score=43.62 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|.|.|.||+||||++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998865
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.13 E-value=0.15 Score=46.73 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|.+|+||||+++.|.|--
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhccc
Confidence 45589999999999999999999873
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.97 E-value=0.18 Score=45.68 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|++|+||||++|.|.|-.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34589999999999999999998873
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=86.87 E-value=0.15 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.|+|.|++|+||||++.+++..-
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhh
Confidence 34579999999999999999999863
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.82 E-value=0.14 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+|+++|.||+||||+.+.|..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999877
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.71 E-value=0.19 Score=48.77 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
.+..+++.|+||+|||+|.++|.+.-
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998753
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=86.69 E-value=0.14 Score=46.58 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.-.++++|++|+||||++|.|.|-.
T Consensus 32 Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999999874
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.67 E-value=0.16 Score=44.12 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.3
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
..+.|+|+|.||+||||+...|..+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999876
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.58 E-value=0.15 Score=43.72 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.7
Q ss_pred cEEEEEeecCCChhHHHHHHHhC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.+|+++|.||+||||..+.|..+
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999866
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.52 E-value=0.2 Score=42.40 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.9
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
-.|++-|.-|+|||||++.|+..
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCccHHHHHHHHHhh
Confidence 47899999999999999999965
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=86.45 E-value=0.19 Score=44.19 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.+-.+++.|++|+|||+|.++|++-
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999875
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.26 E-value=0.18 Score=45.47 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.8
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|.+|+||||+++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCcchhhHhccCCC
Confidence 45589999999999999999998864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=86.24 E-value=0.19 Score=45.73 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
..-.++++|++|+||||++|.|.|--
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999884
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.23 E-value=0.17 Score=43.29 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+|+++|.||+||||..+.|..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999766
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=86.17 E-value=0.13 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+.-.++++|.+|+||||++|.|.|-
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999984
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.12 E-value=0.18 Score=45.86 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEEeecCCChhHHHHHHHhCC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.++++|++|+||||+++.|.|--
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999999874
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=86.07 E-value=0.19 Score=42.28 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.-|+|.|.||+||||+.+.|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35677799999999999999887
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.06 E-value=0.2 Score=46.74 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHh
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
.+..|+|.|.+|+|||||...|..
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEeECCCCCCHHHHHHHHHH
Confidence 346889999999999999987754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=86.02 E-value=0.14 Score=43.24 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+|+++|.||+||||+.+.|...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999766
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=85.78 E-value=0.21 Score=43.08 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.8
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
--|++.|++|+||||+.-.|+.+-.
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 3589999999999999999997654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=85.67 E-value=0.23 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.6
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
--|+|.|++|+||||+.-.|+.+-.
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 4589999999999999999987653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=85.64 E-value=0.19 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.-.++++|.+|+||||+++.|.|-.
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4579999999999999999999874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.63 E-value=0.18 Score=43.84 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 304 DAKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 304 ~~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.+|..|+|-|..|+||||+++.|...
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999999866
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.42 E-value=0.22 Score=43.15 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.+.|.|++|+|||+|...|+..-
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999988654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=0.63 Score=43.83 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.4
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..++++|++|||||.|..+|...
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHhh
Confidence 46899999999999999998764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.11 E-value=0.25 Score=44.72 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.+..+.+.|.||+||||++++|...
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.91 E-value=0.21 Score=42.90 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.1
Q ss_pred cEEEEEeecCCChhHHHHHHHhC
Q psy11743 307 PTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 307 ~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.+|+++|.||+||||+.+.|..+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=84.90 E-value=0.31 Score=42.03 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERDF 331 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~~ 331 (551)
.|..|++.|.+++||||+.++|...++
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~g~ 28 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSWGY 28 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 467889999999999999999976553
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=84.80 E-value=0.25 Score=44.87 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|.+|+||||+++.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34579999999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=84.79 E-value=0.2 Score=42.73 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.0
Q ss_pred EEEEeecCCChhHHHHHHHhC
Q psy11743 309 VMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 309 ~~~~g~~~~gKss~~n~l~~~ 329 (551)
++|.|.||+||||+++.|...
T Consensus 4 ivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567799999999999999654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.70 E-value=0.14 Score=44.03 Aligned_cols=25 Identities=40% Similarity=0.274 Sum_probs=21.5
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
++..|.++|.||+||||+.+.|..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567788999999999999999755
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=84.65 E-value=0.18 Score=45.43 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|++|+||||++|.|.|-.
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34579999999999999999999874
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.41 E-value=0.21 Score=45.78 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.4
Q ss_pred CcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
.-.++++|.+|+||||++|.|.|--
T Consensus 30 Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 30 GDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCC
Confidence 4478999999999999999999884
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.20 E-value=0.21 Score=46.60 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.6
Q ss_pred CEEEEEeccCCChHHHHHHHH
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLL 77 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Ll 77 (551)
..-+|+|+.|+||||++.+|.
T Consensus 25 ~lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 25 RVTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 367899999999999999984
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=84.11 E-value=0.19 Score=42.67 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.3
Q ss_pred EEEEEeecCCChhHHHHHHHhC
Q psy11743 308 TVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 308 ~~~~~g~~~~gKss~~n~l~~~ 329 (551)
.|+++|.||+||||+.+.|..+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999999765
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=83.97 E-value=0.3 Score=41.75 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred CEEEEEeccCCChHHHHHHHHhcCC
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLERDF 81 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~~~ 81 (551)
.-|+|.|.+|+||||+.-.|+.+-.
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 4699999999999999999987754
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=83.94 E-value=0.23 Score=45.61 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|.+|+||||+++.|.|-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 34579999999999999999999764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.82 E-value=0.25 Score=43.47 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=26.0
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC-CCCcccccCC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER-DFPGIHIGPE 339 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~-~~~~~~v~~~ 339 (551)
+|.|+|.|+||+||||....|..+ ++..+.+|..
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 568899999999999999999877 5443433333
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.63 E-value=0.29 Score=43.01 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.8
Q ss_pred EEEEEeccCCChHHHHHHHHh
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg 78 (551)
-|+|-|..||||||+++.|..
T Consensus 4 fIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478889999999999998875
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=83.51 E-value=0.28 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
.|+|.|..||||||+.+.|...
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=83.14 E-value=0.2 Score=47.67 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEEeccCCChHHHHHHHHh
Q psy11743 58 TVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 58 ~V~ivG~~n~GKSTLiN~Llg 78 (551)
-|+++|.+|+|||+|.++|.+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 489999999999999999976
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.07 E-value=0.33 Score=43.20 Aligned_cols=25 Identities=28% Similarity=0.378 Sum_probs=21.7
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
+.+.+.+.|+||+||||+++.|.+.
T Consensus 44 ~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 44 SMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456899999999999999999875
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.05 E-value=0.3 Score=42.95 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.5
Q ss_pred CcEEEEEeecCCChhHHHHHHHhC
Q psy11743 306 KPTVMLVGQYSTGKTTFIRYLLER 329 (551)
Q Consensus 306 ~~~~~~~g~~~~gKss~~n~l~~~ 329 (551)
|..|+|-|.+++||||+.+.|...
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999755
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=82.84 E-value=0.2 Score=45.94 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|.+|+||||+++.|.|--
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 45589999999999999999998873
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.78 E-value=0.2 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.1
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..|+|-|..||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999987664
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.67 E-value=0.31 Score=43.25 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.2
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhc
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..-.+.|.|++|+|||||...++-.
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3458999999999999999988743
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.35 E-value=0.35 Score=42.71 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=19.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
..|+|-|..||||||+++.|...
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45888899999999988887653
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| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.03 E-value=0.34 Score=48.13 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.6
Q ss_pred CCEEEEEeccCCChHHHHHHHHhc
Q psy11743 56 KPTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 56 ~~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
+-.|+++|++|||||-|.++|.+.
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
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| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.51 E-value=0.23 Score=45.08 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCcEEEEEeecCCChhHHHHHHHhCC
Q psy11743 305 AKPTVMLVGQYSTGKTTFIRYLLERD 330 (551)
Q Consensus 305 ~~~~~~~~g~~~~gKss~~n~l~~~~ 330 (551)
+.-.++++|++|+||||++|.|.|-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 34589999999999999999999864
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.30 E-value=0.43 Score=46.22 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.3
Q ss_pred CEEEEEeccCCChHHHHHHHH
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLL 77 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Ll 77 (551)
..-+|+|+.|+||||++.+|.
T Consensus 26 ~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 26 NFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999983
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.78 E-value=0.44 Score=42.54 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.2
Q ss_pred CEEEEEeccCCChHHHHHHHHhc
Q psy11743 57 PTVMLVGQYSTGKTTFIRYLLER 79 (551)
Q Consensus 57 ~~V~ivG~~n~GKSTLiN~Llg~ 79 (551)
-.|+|=|.-||||||+++.|...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36889999999999999999764
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| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.77 E-value=0.45 Score=42.56 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCCEEEEEeccCCChHHHHHHHHhcC
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLERD 80 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg~~ 80 (551)
..-.++|.|++|+|||||.-.++-.-
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999887543
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| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=80.05 E-value=0.46 Score=43.50 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.1
Q ss_pred CCCEEEEEeccCCChHHHHHHHHh
Q psy11743 55 AKPTVMLVGQYSTGKTTFIRYLLE 78 (551)
Q Consensus 55 ~~~~V~ivG~~n~GKSTLiN~Llg 78 (551)
..-.++|.|+||+|||||+..+.-
T Consensus 34 ~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 334789999999999999888874
|