Psyllid ID: psy11766

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
VPRGGSLRERTYSGDKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV
Secondary Structure (PSIPRED)
ccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccEEEccccEEcccccccccccccccccHHHHHHHHHHEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEcccccccccccccccccccccccHcccHHHHHHEEEHHHHHHccccccEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEHHEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
vprggslrertysgdkqerahHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSvgignvwrfpylayqngggaflIPYLIMLVLAGKPMYFLELAVgqfggvgplglwnccpiakgVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSlqfdvpwskcdpewadmstcyvrgvnvsmshvesarvcyspsrishvgishvkasfacpphtspqskcdpewadmstcyvrgv
Flexible Loop (DISEMBL)
vprggslrertysgdkqerahhrrfsahivarrestftsidaairrPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPPhtspqskcdpewaDMSTCYVRGV
Low Complexity Region (SEG)
VPRGGSLRERTYSGDKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV
Disordered region (IsUnstruct)
**************************AHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFAC*************************
Disordered Region (DISOPRED)
*************************************************************WEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV
Disordered Region (DISEMBL)
*********************HRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFAC***********PEWADMSTCYVRGV
Disordered Region (DISPRO)
******************************************************RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYV**********ESARVCYSPSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VPRGGSLRERTYSGDKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
A7Y2X0	790	Sodium- and chloride-depe	N/A	N/A	0.504	0.158	0.544	6e-42
Q9JMA9	638	Sodium- and chloride-depe	yes	N/A	0.580	0.225	0.547	2e-41
Q9UN76	642	Sodium- and chloride-depe	yes	N/A	0.576	0.222	0.5	1e-40
Q761V0	799	Sodium- and chloride-depe	no	N/A	0.504	0.156	0.56	4e-40
Q9Y345	797	Sodium- and chloride-depe	no	N/A	0.504	0.156	0.56	4e-40
P58295	799	Sodium- and chloride-depe	no	N/A	0.504	0.156	0.56	5e-40
Q6PGE7	637	Sodium-dependent proline	no	N/A	0.645	0.251	0.448	5e-39
Q99884	636	Sodium-dependent proline	no	N/A	0.645	0.251	0.454	5e-39
P28573	637	Sodium-dependent proline	no	N/A	0.645	0.251	0.448	5e-39
Q01959	620	Sodium-dependent dopamine	no	N/A	0.540	0.216	0.492	1e-37

>sp|A7Y2X0|SC6A5_XENLA Sodium- and chloride-dependent glycine transporter 2 OS=Xenopus laevis GN=slc6a5 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 68/125 (54%), Positives = 100/125 (80%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG+W ++ +F+LS VG +VG+GNVWRFPYLA++NGGGAFLIPYL ML LAG P+++LE+A
Sbjct: 184 RGNWSNKLDFILSMVGYAVGLGNVWRFPYLAFKNGGGAFLIPYLTMLALAGLPIFYLEVA 243

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQF   GP+ +W   P  +G G+AM+ +S+++ IYYN+IM YT++Y+F+SL + +PW+ 
Sbjct: 244 LGQFASQGPISVWKAIPALQGCGIAMLIISVLIAIYYNIIMCYTIFYLFASLVYVLPWAS 303

Query: 175 CDPEW 179
           C+  W
Sbjct: 304 CNNPW 308

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.
Xenopus laevis (taxid: 8355)

>sp|Q9JMA9|S6A14_MOUSE Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) OS=Mus musculus GN=Slc6a14 PE=2 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 108/148 (72%), Gaps = 4/148 (2%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ERG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct: 35  ERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYTNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           ++GQF  +GP+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYY+F+S Q  +PW+
Sbjct: 95  SLGQFASLGPVSVWRILPLFQGVGITMVLISVFVAIYYNVIIAYSLYYLFASFQSVLPWA 154

Query: 174 KCDPEWADMS---TCYVRGVNVSMSHVE 198
            C   WAD +   T  V G NVS+   E
Sbjct: 155 NCS-SWADENCSRTPIVTGCNVSIGAGE 181

Mediates the uptake of a broad range of neutral and cationic amino acids (with the exception of proline) in a Na(+)/Cl(-)-dependent manner.

Mus musculus (taxid: 10090)

>sp|Q9UN76|S6A14_HUMAN Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) OS=Homo sapiens GN=SLC6A14 PE=2 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/152 (50%), Positives = 107/152 (70%), Gaps = 9/152 (5%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +RG+W  + ++LLS +G +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct: 35  DRGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYSNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           ++GQF  +GP+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYYMF+S Q ++PW 
Sbjct: 95  SLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSELPWK 154

Query: 174 KCDPEWAD--------MSTCYVRGVNVSMSHV 197
            C   W+D        ++ C V  VN  +  +
Sbjct: 155 NCS-SWSDKNCSRSPIVTHCNVSTVNKGIQEI 185

Mediates the uptake of a broad range of neutral and cationic amino acids (with the exception of proline) in a Na(+)/Cl(-)-dependent manner.

Homo sapiens (taxid: 9606)

>sp|Q761V0|SC6A5_MOUSE Sodium- and chloride-dependent glycine transporter 2 OS=Mus musculus GN=Slc6a5 PE=2 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 98/125 (78%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG+W S+ +F+LS VG +VG+GNVWRFPYLA+QNGGGAFLIPYL+ML LAG P++FLE++
Sbjct: 193 RGNWSSKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGLPIFFLEVS 252

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQF   GP+ +W   P  +G G+AM+ +S+++ IYYNVI+ YTL+Y+F+S    +PW  
Sbjct: 253 LGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIYYNVIICYTLFYLFASFVSVLPWGS 312

Query: 175 CDPEW 179
           C+  W
Sbjct: 313 CNNPW 317

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Mus musculus (taxid: 10090)

>sp|Q9Y345|SC6A5_HUMAN Sodium- and chloride-dependent glycine transporter 2 OS=Homo sapiens GN=SLC6A5 PE=1 SV=3

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 98/125 (78%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG+W S+ +F+LS VG +VG+GNVWRFPYLA+QNGGGAFLIPYL+ML LAG P++FLE++
Sbjct: 191 RGNWSSKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGLPIFFLEVS 250

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQF   GP+ +W   P  +G G+AM+ +S+++ IYYNVI+ YTL+Y+F+S    +PW  
Sbjct: 251 LGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIYYNVIICYTLFYLFASFVSVLPWGS 310

Query: 175 CDPEW 179
           C+  W
Sbjct: 311 CNNPW 315

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Homo sapiens (taxid: 9606)

>sp|P58295|SC6A5_RAT Sodium- and chloride-dependent glycine transporter 2 OS=Rattus norvegicus GN=Slc6a5 PE=2 SV=1

 Score =  164 bits (416), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 98/125 (78%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG+W S+ +F+LS VG +VG+GNVWRFPYLA+QNGGGAFLIPYL+ML LAG P++FLE++
Sbjct: 193 RGNWSSKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGLPIFFLEVS 252

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQF   GP+ +W   P  +G G+AM+ +S+++ IYYNVI+ YTL+Y+F+S    +PW  
Sbjct: 253 LGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIYYNVIICYTLFYLFASFVSVLPWGS 312

Query: 175 CDPEW 179
           C+  W
Sbjct: 313 CNNPW 317

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q6PGE7|SC6A7_MOUSE Sodium-dependent proline transporter OS=Mus musculus GN=Slc6a7 PE=2 SV=1

 Score =  161 bits (407), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 106/165 (64%), Gaps = 5/165 (3%)

Query: 15  DKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVG 74
            K + AH R+     +    S    +D  +        A+RG+W  + +FLLSC+G  VG
Sbjct: 2   KKLQEAHLRKPITPDLLMTPSDQGDVDLDVD-----FAADRGNWTGKLDFLLSCIGYCVG 56

Query: 75  IGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAK 134
           +GNVWRFPY AY NGGGAFL+PY +ML + G P++FLEL++GQF  +GPL +W   P+ K
Sbjct: 57  LGNVWRFPYRAYTNGGGAFLVPYFLMLAICGIPLFFLELSLGQFSSLGPLAVWKISPLFK 116

Query: 135 GVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEW 179
           G G AM+ +  +V IYYN+I++Y L+Y+F+SL  ++PW  C   W
Sbjct: 117 GAGAAMLLIVGLVAIYYNMIIAYVLFYLFASLTSNLPWEHCGNWW 161

Terminates the action of proline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Mus musculus (taxid: 10090)

>sp|Q99884|SC6A7_HUMAN Sodium-dependent proline transporter OS=Homo sapiens GN=SLC6A7 PE=2 SV=2

 Score =  160 bits (406), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 5/165 (3%)

Query: 15  DKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVG 74
            K + AH R+     +    S    +D  +        A RG+W  + +FLLSC+G  VG
Sbjct: 2   KKLQGAHLRKPVTPDLLMTPSDQGDVDLDVDF-----AAHRGNWTGKLDFLLSCIGYCVG 56

Query: 75  IGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAK 134
           +GNVWRFPY AY NGGGAFL+PY +ML + G P++FLEL++GQF  +GPL +W   P+ K
Sbjct: 57  LGNVWRFPYRAYTNGGGAFLVPYFLMLAICGIPLFFLELSLGQFSSLGPLAVWKISPLFK 116

Query: 135 GVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEW 179
           G G AM+ +  +V IYYN+I++Y L+Y+F+SL  D+PW  C   W
Sbjct: 117 GAGAAMLLIVGLVAIYYNMIIAYVLFYLFASLTSDLPWEHCGNWW 161

Terminates the action of proline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Homo sapiens (taxid: 9606)

>sp|P28573|SC6A7_RAT Sodium-dependent proline transporter OS=Rattus norvegicus GN=Slc6a7 PE=2 SV=2

 Score =  160 bits (406), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 106/165 (64%), Gaps = 5/165 (3%)

Query: 15  DKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVG 74
            K + AH R+     +    S    +D  +        A+RG+W  + +FLLSC+G  VG
Sbjct: 2   KKLQEAHLRKPVTPDLLMTPSDQGDVDLDVD-----FAADRGNWTGKLDFLLSCIGYCVG 56

Query: 75  IGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAK 134
           +GNVWRFPY AY NGGGAFL+PY +ML + G P++FLEL++GQF  +GPL +W   P+ K
Sbjct: 57  LGNVWRFPYRAYTNGGGAFLVPYFLMLAICGIPLFFLELSLGQFSSLGPLAVWKISPLFK 116

Query: 135 GVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEW 179
           G G AM+ +  +V IYYN+I++Y L+Y+F+SL  ++PW  C   W
Sbjct: 117 GAGAAMLLIVGLVAIYYNMIIAYVLFYLFASLTSNLPWEHCGNWW 161

Terminates the action of proline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Rattus norvegicus (taxid: 10116)

>sp|Q01959|SC6A3_HUMAN Sodium-dependent dopamine transporter OS=Homo sapiens GN=SLC6A3 PE=1 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 96/134 (71%)

Query: 46  RPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAG 105
           R S     +R +WG + +FLLS +G +V + NVWRFPYL Y+NGGGAFL+PYL+ +V+AG
Sbjct: 51  RQSPVEAQDRETWGKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYLLFMVIAG 110

Query: 106 KPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
            P++++ELA+GQF   G  G+W  CPI KGVG  ++ +SL V  +YNVI+++ L+Y+FSS
Sbjct: 111 MPLFYMELALGQFNREGAAGVWKICPILKGVGFTVILISLYVGFFYNVIIAWALHYLFSS 170

Query: 166 LQFDVPWSKCDPEW 179
              ++PW  C+  W
Sbjct: 171 FTTELPWIHCNNSW 184

Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
391329891	714	PREDICTED: sodium- and chloride-dependen	0.705	0.245	0.612	1e-58
241697170	525	GABA transporter, putative [Ixodes scapu	0.560	0.264	0.65	1e-49
442761189	729	Putative sodium-neurotransmitter symport	0.564	0.192	0.645	2e-49
327284063	584	PREDICTED: sodium- and chloride-dependen	0.532	0.226	0.609	2e-43
260833230	587	hypothetical protein BRAFLDRAFT_117177 [	0.665	0.281	0.502	1e-42
291242401	683	PREDICTED: sodium- and chloride-dependen	0.633	0.229	0.524	2e-42
198430228	651	PREDICTED: similar to Sodium-dependent p	0.572	0.218	0.556	3e-42
440903133	641	Sodium- and chloride-dependent neutral a	0.584	0.226	0.560	3e-42
148540298	640	sodium- and chloride-dependent neutral a	0.584	0.226	0.560	3e-42
198435741	658	PREDICTED: similar to SLC6A14 protein [C	0.596	0.224	0.525	3e-42

>gi|391329891|ref|XP_003739400.1| PREDICTED: sodium- and chloride-dependent glycine transporter 2-like [Metaseiulus occidentalis]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 135/183 (73%), Gaps = 8/183 (4%)

Query: 16  KQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGI 75
           K+E A     +A     R+          RR S+A++A RG+WG+RWEFLLSCVGLSVGI
Sbjct: 32  KEEIATEGEVNAAFEMTRDDQIKKASGG-RRNSVASIASRGNWGNRWEFLLSCVGLSVGI 90

Query: 76  GNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKG 135
           GNVWRFPYLAY+NGGGAFLIPYL+ML+L GKPMYF+ELA GQF G GPL +W C PI KG
Sbjct: 91  GNVWRFPYLAYKNGGGAFLIPYLVMLMLVGKPMYFMELAFGQFAGQGPLTIWACSPICKG 150

Query: 136 VGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVR-----GV 190
           VG+AM+  SLIVC+YYNV+MSYTL++M ++ Q +VPW KC PEW    TC+VR     G 
Sbjct: 151 VGMAMIISSLIVCVYYNVVMSYTLHFMAAAFQSEVPWEKCAPEWN--GTCFVRSEAAKGT 208

Query: 191 NVS 193
           NVS
Sbjct: 209 NVS 211

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241697170|ref|XP_002413104.1| GABA transporter, putative [Ixodes scapularis] gi|215506918|gb|EEC16412.1| GABA transporter, putative [Ixodes scapularis]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 116/140 (82%), Gaps = 1/140 (0%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ERG W ++ EF+LSC+GLSVGIGN+WRFP+LAYQNGGGAFL+PY+I+++L GKPMYF+E+
Sbjct: 11  ERGQWANKTEFILSCIGLSVGIGNIWRFPFLAYQNGGGAFLLPYVILMLLVGKPMYFMEV 70

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           A+GQF  +GPL +W C PIAKGVGVAMV VSLIV +YYNVI++YT++YM  S + ++PW 
Sbjct: 71  ALGQFTSLGPLSVWRCLPIAKGVGVAMVVVSLIVAVYYNVILAYTVFYMAQSFRSELPWV 130

Query: 174 KCDPEW-ADMSTCYVRGVNV 192
            C   W AD+ TCYVR  NV
Sbjct: 131 NCHEWWGADLETCYVRSKNV 150

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761189|gb|JAA72753.1| Putative sodium-neurotransmitter symporter, partial [Ixodes ricinus]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 115/141 (81%), Gaps = 1/141 (0%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ERG W ++ EF+LSC+GLSVGIGN+WRFP+LAYQNGGGAFL+PY+I+++L GKPMYF+E+
Sbjct: 118 ERGQWANKTEFILSCIGLSVGIGNIWRFPFLAYQNGGGAFLLPYVILMLLVGKPMYFMEV 177

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           A+GQF  +GPL +W C PIAKGVGVAMV VSLIV +YYNVI++YT++YM  S + ++PW 
Sbjct: 178 ALGQFTSLGPLSVWRCLPIAKGVGVAMVVVSLIVAVYYNVILAYTVFYMAQSFRSELPWV 237

Query: 174 KCDPEW-ADMSTCYVRGVNVS 193
            C   W AD  TCYVR  NV 
Sbjct: 238 DCHEWWGADPETCYVRSKNVE 258

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327284063|ref|XP_003226758.1| PREDICTED: sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)-like [Anolis carolinensis]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 105/133 (78%), Gaps = 1/133 (0%)

Query: 53  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLE 112
           +ERG+W S+ ++LLS VG +VG+GNVWRFPYL YQNGGGAFLIPY IML LAG P++FLE
Sbjct: 33  SERGNWSSKTDYLLSMVGYAVGLGNVWRFPYLTYQNGGGAFLIPYTIMLALAGLPLFFLE 92

Query: 113 LAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPW 172
            ++GQF  +GP+ +W   P+ +GVGV MV +S  V IYYNVI+ Y+LYY+F+S Q  +PW
Sbjct: 93  CSLGQFASLGPVSIWRILPLLQGVGVTMVVISTFVTIYYNVIIGYSLYYLFASFQSVLPW 152

Query: 173 SKCDPEWADMSTC 185
           + CDP+WAD  TC
Sbjct: 153 ADCDPDWAD-DTC 164

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260833230|ref|XP_002611560.1| hypothetical protein BRAFLDRAFT_117177 [Branchiostoma floridae] gi|229296931|gb|EEN67570.1| hypothetical protein BRAFLDRAFT_117177 [Branchiostoma floridae]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 118/173 (68%), Gaps = 8/173 (4%)

Query: 38  TSIDAAIRRPSLAAVAE-RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIP 96
           + ID     PS+++  + RG+WG+  EF LSC+G +VG+GNVWRFPYL Y+NGGGAFLIP
Sbjct: 22  SGIDGECETPSVSSDGDDRGTWGNHMEFFLSCLGFAVGLGNVWRFPYLCYRNGGGAFLIP 81

Query: 97  YLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMS 156
           Y+  LV AG PM+FLEL+ GQF G GP+ +W   P+ KGVG AMV +S +VCIYYNVI+S
Sbjct: 82  YVFFLVFAGVPMFFLELSFGQFAGTGPITIWRVAPMFKGVGFAMVMISFLVCIYYNVIIS 141

Query: 157 YTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRI 209
           Y L+Y+F+S    +PW  C+ ++ + + C      V   HV+ A   Y  S+I
Sbjct: 142 YILHYLFASFTSVLPWVTCNNDY-NTADC------VEGGHVKMAFEIYKCSKI 187

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291242401|ref|XP_002741096.1| PREDICTED: sodium- and chloride-dependent glycine transporter 1-like [Saccoglossus kowalevskii]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 110/166 (66%), Gaps = 9/166 (5%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ERG+W  + +F+LSC+G +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++F+EL
Sbjct: 90  ERGNWSKQLDFILSCIGFAVGLGNVWRFPYLCYSNGGGAFLIPYTIMLFLAGIPLFFMEL 149

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           A GQF   GP  +W  CP+ KGVG AMVT+S +V IYYNVI+ Y +YY+F+S    +PW 
Sbjct: 150 AFGQFASQGPFTIWTICPLFKGVGYAMVTISFLVTIYYNVIIGYAIYYIFASFADVLPWV 209

Query: 174 KCDPEWADMSTCY--------VRGVNVSMSHVESARVCYSPS-RIS 210
            CD EW   S  Y        + G  +S   VE   +  + S RIS
Sbjct: 210 GCDHEWNTDSCGYPPQPNGTVINGTWISQEMVEDMNITVNVSLRIS 255

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|198430228|ref|XP_002126622.1| PREDICTED: similar to Sodium-dependent proline transporter (Solute carrier family 6 member 7) [Ciona intestinalis]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 107/142 (75%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  WG + EFLLSC+G  VG+GNVWRFPYLAY+NGGGAFLIPY+IML L G P++ +EL
Sbjct: 24  KREQWGGQIEFLLSCIGYCVGLGNVWRFPYLAYENGGGAFLIPYIIMLCLCGIPLFMMEL 83

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           + GQF G+GP+  W   PI KG+G  MVTVS +VCIYYNVI++++L+Y+F+S Q  +PW+
Sbjct: 84  SFGQFAGLGPITAWRSVPIFKGIGFGMVTVSFLVCIYYNVIIAWSLFYLFASFQSVLPWT 143

Query: 174 KCDPEWADMSTCYVRGVNVSMS 195
            CD  W   S C  + ++++ S
Sbjct: 144 LCDQWWNKESYCPPQNISLNAS 165

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440903133|gb|ELR53832.1| Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) [Bos grunniens mutus]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 112/148 (75%), Gaps = 3/148 (2%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ERG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY+IML LAG P++FLE 
Sbjct: 35  ERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYVIMLALAGLPLFFLEC 94

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           ++GQF  +GP+ +W   P+ +GVG+ MV +SL V IYYNVI++Y+LYY+F+S Q ++PWS
Sbjct: 95  SMGQFSSLGPVAVWRLLPLFQGVGITMVLISLFVTIYYNVIIAYSLYYLFASFQRELPWS 154

Query: 174 KCDPEWADMS---TCYVRGVNVSMSHVE 198
           KC   WAD +   + +V   NVS+S  E
Sbjct: 155 KCSISWADGNCSRSPFVTHCNVSISINE 182

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148540298|ref|NP_001091931.1| sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) [Bos taurus] gi|146326952|gb|AAI40561.1| SLC6A14 protein [Bos taurus] gi|296471344|tpg|DAA13459.1| TPA: solute carrier family 6 (amino acid transporter), member 14 [Bos taurus]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 112/148 (75%), Gaps = 3/148 (2%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ERG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY+IML LAG P++FLE 
Sbjct: 35  ERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYVIMLALAGLPLFFLEC 94

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           ++GQF  +GP+ +W   P+ +GVG+ MV +SL V IYYNVI++Y+LYY+F+S Q ++PWS
Sbjct: 95  SMGQFSSLGPVSVWRILPLFQGVGITMVLISLFVTIYYNVIIAYSLYYLFASFQRELPWS 154

Query: 174 KCDPEWADMS---TCYVRGVNVSMSHVE 198
           KC   WAD +   + +V   NVS+S  E
Sbjct: 155 KCSISWADGNCSRSPFVTHCNVSISINE 182

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198435741|ref|XP_002131725.1| PREDICTED: similar to SLC6A14 protein [Ciona intestinalis]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 111/154 (72%), Gaps = 6/154 (3%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +RG+W ++ ++LLSC+G +VG+GNVWRFPYLA++NGGGAFLIPY+IMLV AG P++F+E+
Sbjct: 11  DRGNWDNKADYLLSCIGYAVGLGNVWRFPYLAFENGGGAFLIPYIIMLVFAGLPIFFMEV 70

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           A+GQF  +GP  +W   P+ KGVGV MV +S  V IYYNVI++YT++Y FSSL  ++PW 
Sbjct: 71  ALGQFSSLGPTSVWKFNPMFKGVGVCMVVLSAFVGIYYNVIIAYTMFYFFSSLTSNLPWE 130

Query: 174 KCDPEWADMSTCYVR------GVNVSMSHVESAR 201
            CD  W D S C +        +NVS    + A 
Sbjct: 131 TCDNWWNDGSICSISFGDVCPSINVSSLTAQEAN 164

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
UNIPROTKB|A5D7H9	640	SLC6A14 "Transporter" [Bos tau	0.568	0.220	0.568	1.9e-44
MGI|MGI:1890216	638	Slc6a14 "solute carrier family	0.564	0.219	0.555	2.5e-42
ZFIN|ZDB-GENE-070112-1492	652	zgc:158225 "zgc:158225" [Danio	0.741	0.282	0.428	3.3e-42
UNIPROTKB|J9PB96	639	SLC6A14 "Transporter" [Canis l	0.709	0.275	0.467	4.1e-42
UNIPROTKB|E2RIT2	640	SLC6A14 "Transporter" [Canis l	0.709	0.275	0.467	4.2e-42
RGD|1561810	640	Slc6a14 "solute carrier family	0.516	0.2	0.578	4.2e-42
UNIPROTKB|E1C8K0	639	SLC6A14 "Transporter" [Gallus	0.556	0.215	0.553	2.2e-41
UNIPROTKB|Q9UN76	642	SLC6A14 "Sodium- and chloride-	0.512	0.197	0.562	3.1e-41
UNIPROTKB|K7GNX7	639	SLC6A14 "Transporter" [Sus scr	0.512	0.198	0.578	3.8e-41
UNIPROTKB|I3LKJ8	641	SLC6A14 "Transporter" [Sus scr	0.512	0.198	0.578	4e-41

UNIPROTKB|A5D7H9 SLC6A14 "Transporter" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 83/146 (56%), Positives = 110/146 (75%)

Query:    54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
             ERG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY+IML LAG P++FLE 
Sbjct:    35 ERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYVIMLALAGLPLFFLEC 94

Query:   114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
             ++GQF  +GP+ +W   P+ +GVG+ MV +SL V IYYNVI++Y+LYY+F+S Q ++PWS
Sbjct:    95 SMGQFSSLGPVSVWRILPLFQGVGITMVLISLFVTIYYNVIIAYSLYYLFASFQRELPWS 154

Query:   174 KCDPEWADMSTC----YVRGVNVSMS 195
             KC   WAD   C    +V   NVS+S
Sbjct:   155 KCSISWAD-GNCSRSPFVTHCNVSIS 179

GO:0009636 "response to toxic substance" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

MGI|MGI:1890216 Slc6a14 "solute carrier family 6 (neurotransmitter transporter), member 14" [Mus musculus (taxid:10090)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 80/144 (55%), Positives = 107/144 (74%)

Query:    54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
             ERG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct:    35 ERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYTNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query:   114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
             ++GQF  +GP+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYY+F+S Q  +PW+
Sbjct:    95 SLGQFASLGPVSVWRILPLFQGVGITMVLISVFVAIYYNVIIAYSLYYLFASFQSVLPWA 154

Query:   174 KCDPEWADMS---TCYVRGVNVSM 194
              C   WAD +   T  V G NVS+
Sbjct:   155 NCS-SWADENCSRTPIVTGCNVSI 177

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0009636 "response to toxic substance" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015837 "amine transport" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031526 "brush border membrane" evidence=ISO

GO:0055085 "transmembrane transport" evidence=ISS

ZFIN|ZDB-GENE-070112-1492 zgc:158225 "zgc:158225" [Danio rerio (taxid:7955)]

 Score = 448 (162.8 bits), Expect = 3.3e-42, P = 3.3e-42
 Identities = 84/196 (42%), Positives = 125/196 (63%)

Query:    55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
             R  WG ++EFLLSC+G  VG+GNVWRFPYL Y+NGGG FLIPY IML   G P++ +EL+
Sbjct:    71 RDQWGGKYEFLLSCIGYCVGLGNVWRFPYLCYRNGGGVFLIPYFIMLFFTGMPLFLMELS 130

Query:   115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
             +GQ+G  GP+ +W CCP+ KG+G+ M+ VS +VC+YYNVI+++T YY+ SS Q  +PWS 
Sbjct:   131 LGQYGAAGPITVWKCCPLLKGIGIGMLCVSTLVCLYYNVIIAWTFYYLGSSFQSPLPWS- 189

Query:   175 CDPEWADMSTCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACP-PHTSPQSKC 233
             CD    +++ C     N + S    + V ++  ++  +G+ H     + P P   P + C
Sbjct:   190 CDA-LQNIALC----ANKTNSTQSPSEVFWN-EKV--LGVVH-STGLSDPGPVRWPLALC 240

Query:   234 D-PEWADMSTCYVRGV 248
                 W  +  C ++G+
Sbjct:   241 LLAAWIIIFLCMLKGI 256

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|J9PB96 SLC6A14 "Transporter" [Canis lupus familiaris (taxid:9615)]

 Score = 446 (162.1 bits), Expect = 4.1e-42, P = 4.1e-42
 Identities = 85/182 (46%), Positives = 119/182 (65%)

Query:    54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
             +RG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct:    35 DRGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query:   114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
             ++GQF  + P+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYYMF+S Q ++PW 
Sbjct:    95 SLGQFASLSPVSIWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSELPWK 154

Query:   174 KCDPEWADMSTC---YVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPPHTSPQ 230
              C   WAD +      V   NVS +  E  RV  + S + +  ++ +  S A  P   P 
Sbjct:   155 NCS-SWADQNCSRSPIVTHCNVSTNTGEIIRV--NRSWVYNNSLTCINGSEAYQPGQLPS 211

Query:   231 SK 232
              +
Sbjct:   212 EQ 213

GO:0016021 "integral to membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

UNIPROTKB|E2RIT2 SLC6A14 "Transporter" [Canis lupus familiaris (taxid:9615)]

 Score = 446 (162.1 bits), Expect = 4.2e-42, P = 4.2e-42
 Identities = 85/182 (46%), Positives = 119/182 (65%)

Query:    54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
             +RG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct:    35 DRGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query:   114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
             ++GQF  + P+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYYMF+S Q ++PW 
Sbjct:    95 SLGQFASLSPVSIWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSELPWK 154

Query:   174 KCDPEWADMSTC---YVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPPHTSPQ 230
              C   WAD +      V   NVS +  E  RV  + S + +  ++ +  S A  P   P 
Sbjct:   155 NCS-SWADQNCSRSPIVTHCNVSTNTGEIIRV--NRSWVYNNSLTCINGSEAYQPGQLPS 211

Query:   231 SK 232
              +
Sbjct:   212 EQ 213

GO:0016021 "integral to membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

RGD|1561810 Slc6a14 "solute carrier family 6 (amino acid transporter), member 14" [Rattus norvegicus (taxid:10116)]

 Score = 446 (162.1 bits), Expect = 4.2e-42, P = 4.2e-42
 Identities = 74/128 (57%), Positives = 99/128 (77%)

Query:    54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
             ERG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct:    35 ERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYTNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query:   114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
             ++GQF  +GP+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYY+F+S Q  +PW+
Sbjct:    95 SLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYLFASFQSVLPWA 154

Query:   174 KCDPEWAD 181
              C   WAD
Sbjct:   155 NCSSSWAD 162

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0031526 "brush border membrane" evidence=IDA

UNIPROTKB|E1C8K0 SLC6A14 "Transporter" [Gallus gallus (taxid:9031)]

 Score = 440 (159.9 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 77/139 (55%), Positives = 103/139 (74%)

Query:    53 AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLE 112
             ++RG+W ++ ++LLS VG +VG+GNVWRFPYL YQNGGGAFLIPY +ML LAG P++F+E
Sbjct:    35 SDRGNWSNKADYLLSMVGYAVGLGNVWRFPYLTYQNGGGAFLIPYTLMLALAGLPLFFME 94

Query:   113 LAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPW 172
              ++GQF  +GP+ +W   P+ +GVGV MV +S  V IYYNVI++Y LYY+F+S Q  +PW
Sbjct:    95 CSLGQFASLGPISIWRILPLFQGVGVTMVIISTFVAIYYNVIIAYALYYLFASFQKVLPW 154

Query:   173 SKCDPEWADMSTCYVRGVN 191
             S C   WAD      R VN
Sbjct:   155 SDCF-SWADEFCSKTRLVN 172

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

UNIPROTKB|Q9UN76 SLC6A14 "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)" [Homo sapiens (taxid:9606)]

 Score = 439 (159.6 bits), Expect = 3.1e-41, P = 3.1e-41
 Identities = 72/128 (56%), Positives = 99/128 (77%)

Query:    54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
             +RG+W  + ++LLS +G +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct:    35 DRGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYSNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query:   114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
             ++GQF  +GP+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYYMF+S Q ++PW 
Sbjct:    95 SLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSELPWK 154

Query:   174 KCDPEWAD 181
              C   W+D
Sbjct:   155 NCS-SWSD 161

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015171 "amino acid transmembrane transporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0003333 "amino acid transmembrane transport" evidence=TAS

UNIPROTKB|K7GNX7 SLC6A14 "Transporter" [Sus scrofa (taxid:9823)]

 Score = 438 (159.2 bits), Expect = 3.8e-41, P = 3.8e-41
 Identities = 74/128 (57%), Positives = 98/128 (76%)

Query:    54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
             +RG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct:    35 DRGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query:   114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
             ++GQF  +GP+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYYMF+S Q  +PW 
Sbjct:    95 SLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSKLPWE 154

Query:   174 KCDPEWAD 181
              C   WAD
Sbjct:   155 NCS-YWAD 161

GO:0016021 "integral to membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

UNIPROTKB|I3LKJ8 SLC6A14 "Transporter" [Sus scrofa (taxid:9823)]

 Score = 438 (159.2 bits), Expect = 4.0e-41, P = 4.0e-41
 Identities = 74/128 (57%), Positives = 98/128 (76%)

Query:    54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
             +RG+W  + ++LLS VG +VG+GNVWRFPYL Y NGGGAFLIPY IML LAG P++FLE 
Sbjct:    35 DRGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYAIMLALAGLPLFFLEC 94

Query:   114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
             ++GQF  +GP+ +W   P+ +GVG+ MV +S+ V IYYNVI++Y+LYYMF+S Q  +PW 
Sbjct:    95 SLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSKLPWE 154

Query:   174 KCDPEWAD 181
              C   WAD
Sbjct:   155 NCS-YWAD 161

GO:0009636 "response to toxic substance" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JMA9	S6A14_MOUSE	No assigned EC number	0.5472	0.5806	0.2257	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	248
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	1e-65
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	2e-62
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	2e-59
cd11496	543	cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen	1e-58
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	1e-54
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	4e-54
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	7e-52
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	5e-50
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	1e-46
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	2e-45
cd11514	555	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent	2e-45
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	1e-44
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	5e-44
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	8e-44
cd11556	552	cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub	2e-43
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	6e-41
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	3e-40
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	5e-40
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	7e-40
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	8e-40
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	2e-39
cd11509	592	cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c	2e-39
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	3e-38
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	5e-38
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	1e-37
cd10334	480	cd10334, SLC6sbd_u1, uncharacterized bacterial and	2e-36
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	3e-35
COG0733	439	COG0733, COG0733, Na+-dependent transporters of th	8e-34
cd10336	439	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa	1e-31
cd11554	406	cd11554, SLC6sbd_u2, uncharacterized eukaryotic so	2e-30
cd10333	500	cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and	5e-29
cd06857	413	cd06857, SLC5-6-like_sbd, Solute carrier families	1e-04

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score =  212 bits (541), Expect = 1e-65
 Identities = 80/153 (52%), Positives = 105/153 (68%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG WG + EFLLSC+G  VG+GNVWRFPYL Y+NGGGAFLIPY IML   G P++F+EL+
Sbjct: 1   RGQWGGKLEFLLSCIGYCVGLGNVWRFPYLCYRNGGGAFLIPYFIMLAFCGIPLFFMELS 60

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQ+G +GPL +W CCPI KG+G  M+ VS +VCIYYNVI+++TL+Y+F+S    +PW  
Sbjct: 61  LGQYGSLGPLTVWKCCPIFKGIGYGMLLVSGLVCIYYNVIIAWTLFYLFASFTSVLPWEH 120

Query: 175 CDPEWADMSTCYVRGVNVSMSHVESARVCYSPS 207
           C   W   S    R  +   +   +     SPS
Sbjct: 121 CGNWWNTESCLEHRVKDNMGALPVNLTRTVSPS 153

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score =  200 bits (512), Expect = 2e-62
 Identities = 73/111 (65%), Positives = 92/111 (82%), Gaps = 1/111 (0%)

Query: 56  GSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAV 115
             WGS+ EFLLSC+G +VG+GNVWRFPYLAY+NGGGAFLIPYLIML+L G P++FLELA+
Sbjct: 1   EQWGSKLEFLLSCIGYAVGLGNVWRFPYLAYENGGGAFLIPYLIMLLLVGIPLFFLELAL 60

Query: 116 GQFGGVGPLG-LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           GQ+   GP+G  W  CP+ KGVG A V +S +V IYYNVI+++TLYY+F+S
Sbjct: 61  GQYTSRGPVGAFWRICPLFKGVGYAQVVISFLVAIYYNVIIAWTLYYLFAS 111

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score =  197 bits (502), Expect = 2e-59
 Identities = 84/180 (46%), Positives = 118/180 (65%), Gaps = 6/180 (3%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG+W  + ++LLS +G +VG+GNVWRFPYL Y+NGGGAFLIPY IML LAG P++FLE +
Sbjct: 1   RGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYKNGGGAFLIPYTIMLALAGLPLFFLECS 60

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQF  +GP+ +W   P+ +GVG+ MV VS  V IYYNVI++Y+LYYMF+S Q  +PWS 
Sbjct: 61  LGQFASLGPISVWRAVPLLQGVGITMVLVSTFVSIYYNVIIAYSLYYMFASFQSPLPWSD 120

Query: 175 CDPEWADM--STCYVRGVNVSMSHVESARVCYSPSRISHVGISHVKASFACPPHTSPQSK 232
           C   WAD   ST  +   NVS++   +  +  + S +    ++ +  S    P   P  +
Sbjct: 121 CS-SWADENCSTSPITHCNVSLA---NNGIHENKSWVDSNNLTCINISIIYQPGQLPSEQ 176

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

 Score =  193 bits (493), Expect = 1e-58
 Identities = 63/125 (50%), Positives = 89/125 (71%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG W ++ +FLLS  G ++G+GNVWRFPYL Y+NGGGAFLIPY I LVL G P++FLE+A
Sbjct: 1   RGKWSNKIDFLLSVAGYAIGLGNVWRFPYLCYKNGGGAFLIPYFIFLVLCGIPIFFLEVA 60

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQ+   G +  W  CP+ KG+G A   +   + IYY VI+++ L+Y+F+S   ++PW+ 
Sbjct: 61  LGQYTSQGGITAWKICPLFKGIGYASAVIVFWLNIYYIVILAWALFYLFNSFTSELPWTT 120

Query: 175 CDPEW 179
           CD  W
Sbjct: 121 CDNWW 125

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score =  182 bits (465), Expect = 1e-54
 Identities = 67/126 (53%), Positives = 94/126 (74%), Gaps = 1/126 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +W  + +FLLS +G +VG+GNVWRFPYL Y+NGGGAFLIPYLI L+ AG P++FLELA
Sbjct: 1   RETWSGKLDFLLSVIGFAVGLGNVWRFPYLCYKNGGGAFLIPYLIFLITAGIPLFFLELA 60

Query: 115 VGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           +GQ+   G +G+W   CP+ KG+G A + +   + IYYNVI+++ LYY+FSS   ++PW+
Sbjct: 61  LGQYTREGAIGVWRKICPLFKGIGYASMVIVFYIGIYYNVIIAWALYYLFSSFTTELPWA 120

Query: 174 KCDPEW 179
            C+  W
Sbjct: 121 SCNNSW 126

Length = 506

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score =  182 bits (464), Expect = 4e-54
 Identities = 65/122 (53%), Positives = 92/122 (75%), Gaps = 1/122 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +W ++ +FLL+ +G +VG+GNVWRFPYL  +NGGGAFLIPY+IMLVL G P++FLELA
Sbjct: 1   RPAWDNKLQFLLATIGYAVGLGNVWRFPYLCQKNGGGAFLIPYVIMLVLEGIPLFFLELA 60

Query: 115 VGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           +GQ    G +G+WN   P   G+G+A   VS +V +YYNVI+++  +Y+F+S Q+ +PWS
Sbjct: 61  IGQRLRKGSIGVWNTISPYLGGIGIASCVVSFLVALYYNVIIAWCFFYLFNSFQYPLPWS 120

Query: 174 KC 175
            C
Sbjct: 121 SC 122

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score =  177 bits (449), Expect = 7e-52
 Identities = 70/125 (56%), Positives = 100/125 (80%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG+W ++ +F+LS VG +VG+GNVWRFPYLA+QNGGGAFLIPYL+ML LAG P++FLE++
Sbjct: 1   RGNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGIPIFFLEVS 60

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQF   GP+ +W   P  +G G+AM+ +S+++ IYYN+IM YTL+Y+F+SL   +PW+ 
Sbjct: 61  LGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIYYNIIMCYTLFYLFASLVEVLPWAS 120

Query: 175 CDPEW 179
           C+  W
Sbjct: 121 CNNPW 125

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score =  171 bits (435), Expect = 5e-50
 Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 2/154 (1%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +WG + +FLLS +G +V +GNVWRFPY+ Y+NGGGAFLIPYL+ML+  G P++++ELA
Sbjct: 1   RETWGKKADFLLSVIGFAVDLGNVWRFPYICYKNGGGAFLIPYLLMLIFGGLPLFYMELA 60

Query: 115 VGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           +GQ+   G + +W   CPI KGVG A+  ++  V  YYN I+++ LYY+FSS   ++PW+
Sbjct: 61  LGQYHRSGCITVWRKICPIFKGVGYAICIIAFYVAFYYNTIIAWALYYLFSSFTSELPWT 120

Query: 174 KCDPEWADMSTCYVRGVNVSMSHVESARVCYSPS 207
            C+  W   +   V   N S S   +  + +SP+
Sbjct: 121 SCNNPWNTPNCTDVSNRNNSSSSNGTWTL-HSPA 153

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score =  162 bits (411), Expect = 1e-46
 Identities = 64/125 (51%), Positives = 92/125 (73%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +WG + +FLLS VG +V + NVWRFPYL Y+NGGGAFLIPY + L++AG P++++ELA
Sbjct: 1   RETWGKKIDFLLSVVGFAVDLANVWRFPYLCYKNGGGAFLIPYTLFLIIAGMPLFYMELA 60

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQ+   G   +W  CP  KGVG A++ ++L V  YYNVI++++LYY+FSS   ++PW+ 
Sbjct: 61  LGQYNREGAATVWKICPCFKGVGYAVILIALYVGFYYNVIIAWSLYYLFSSFTSELPWTT 120

Query: 175 CDPEW 179
           C   W
Sbjct: 121 CGNVW 125

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score =  159 bits (404), Expect = 2e-45
 Identities = 66/126 (52%), Positives = 90/126 (71%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +RG+WG++ EF+L+ VG +VG+GNVWRFPYL Y+NGGGAF+ PY IMLV  G P++F+EL
Sbjct: 16  KRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGIPLFFMEL 75

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           + GQF   G LG+W   P+ KGVG  M+ VS  + IYYNV++    YY F S+   +PW+
Sbjct: 76  SFGQFASQGCLGVWRVSPMFKGVGYGMMVVSTYIGIYYNVVICIAFYYFFMSMTRVLPWT 135

Query: 174 KCDPEW 179
            C+  W
Sbjct: 136 YCNNPW 141

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

 Score =  159 bits (403), Expect = 2e-45
 Identities = 64/125 (51%), Positives = 92/125 (73%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +WG + +FLLS +G +V + NVWRFPYL Y+NGGGAFL+PYL  +V+AG P++++ELA
Sbjct: 1   RETWGKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYLFFMVIAGMPLFYMELA 60

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQF   G  G+W  CPI KGVG  ++ +SL V  +YNVI+++ L+Y+FSS   ++PW  
Sbjct: 61  LGQFNREGAAGVWKICPIFKGVGFTVILISLYVGFFYNVIIAWALFYLFSSFTGELPWIH 120

Query: 175 CDPEW 179
           C+  W
Sbjct: 121 CNNSW 125

DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 555

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score =  157 bits (398), Expect = 1e-44
 Identities = 64/149 (42%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R +W  +++FL+SCVG ++G+GNVWRFPYL  +NGGGAFLIPY + L+ AG P++ LE 
Sbjct: 42  DRDTWKGKFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLEC 101

Query: 114 AVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           ++GQ+  +G LG+W   P+ KGVG+A   +S  + IYY VI+++ +YY+++S    +PW 
Sbjct: 102 SLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIIAWAIYYLYNSFTTTLPWK 161

Query: 174 KCDPEWADMSTCYVRGVNVSMSHVESARV 202
            CD  W +   C+      + +++ SA V
Sbjct: 162 SCDNPW-NTDRCFSNYSMANTTNMTSAVV 189

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score =  155 bits (393), Expect = 5e-44
 Identities = 58/133 (43%), Positives = 84/133 (63%), Gaps = 2/133 (1%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  W ++ E++L+ VG S+G+GN+WRFPYL  +NGGG+FLI Y +ML L G P+ FLE+A
Sbjct: 1   RPLWRNKTEYILAQVGFSLGLGNLWRFPYLCLRNGGGSFLIAYFVMLFLVGIPLLFLEMA 60

Query: 115 VGQFGGVGPLGLWNC-CPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           VGQ    G + +W    P   GVG + V    +V +YYNV+ S+ L+Y+  S QF +PW 
Sbjct: 61  VGQRLQQGSIRVWKAISPWFGGVGYSSVLACFLVALYYNVVNSWALFYLGHSFQFPLPWE 120

Query: 174 KC-DPEWADMSTC 185
           +C   + +    C
Sbjct: 121 QCPLVKNSSDPEC 133

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score =  154 bits (391), Expect = 8e-44
 Identities = 62/128 (48%), Positives = 89/128 (69%), Gaps = 1/128 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +WG + +FLLS +G +V +GNVWRFPY+ YQNGGGAFLIPY +M +  G P++++ELA
Sbjct: 1   RETWGKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYTLMAIFGGIPLFYMELA 60

Query: 115 VGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           +GQ+   G + +W   CPI KG+G A+  ++L V  YYN I+++ LYY+ SS    +PW+
Sbjct: 61  LGQYHRTGCISIWRKICPIFKGIGYAICIIALYVASYYNTIIAWALYYLISSFATTLPWT 120

Query: 174 KCDPEWAD 181
            CD  W  
Sbjct: 121 SCDNSWNT 128

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain

 Score =  153 bits (389), Expect = 2e-43
 Identities = 62/126 (49%), Positives = 92/126 (73%), Gaps = 1/126 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +W  + +FLLS +G +V + NVWRFPYL Y+NGGGAFLIPY IMLV+ G P++++ELA
Sbjct: 1   RETWSKKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLIPYGIMLVVGGIPLFYMELA 60

Query: 115 VGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           +GQ+   G +  W   CP+ KG+G A+V ++  V  +YNVI++++LYY F+S  F++PW+
Sbjct: 61  LGQYYRKGAITSWGRICPLFKGIGYAVVLIAFYVDFFYNVIIAWSLYYFFASFTFNLPWT 120

Query: 174 KCDPEW 179
            C+  W
Sbjct: 121 SCNNSW 126

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score =  147 bits (372), Expect = 6e-41
 Identities = 61/122 (50%), Positives = 90/122 (73%), Gaps = 1/122 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +W S+ +++L+ +G SVG+GNVWRFPYL  +NGGGA+L+PYL++L++ G P++FLELA
Sbjct: 1   RPAWNSKLQYILAQIGYSVGLGNVWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELA 60

Query: 115 VGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           VGQ    G +G+WN  CP   G+G A   V   V +YYNVI+ ++++Y F S Q+ +PWS
Sbjct: 61  VGQRIRRGSIGVWNYICPRLGGIGYASCLVCFFVGLYYNVIIGWSIFYFFKSFQYPLPWS 120

Query: 174 KC 175
           +C
Sbjct: 121 EC 122

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score =  145 bits (367), Expect = 3e-40
 Identities = 62/126 (49%), Positives = 85/126 (67%), Gaps = 1/126 (0%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ER  W ++ ++LLSC+G +VG+GN+WRFPYL    GGGAFLIPY I LV  G P++ LEL
Sbjct: 1   ERPKWDNKAQYLLSCIGFAVGLGNIWRFPYLCQTYGGGAFLIPYFIALVFEGIPLFHLEL 60

Query: 114 AVGQFGGVGPLGLWNC-CPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPW 172
           A+GQ    G +G+W    P   GVG+  VTVS +V +YYN I+++ L+Y  +S Q  +PW
Sbjct: 61  AIGQRLRKGSIGVWTTISPYLGGVGLGCVTVSFLVSLYYNTILAWVLWYFLNSFQHPLPW 120

Query: 173 SKCDPE 178
           S C  +
Sbjct: 121 SSCPLD 126

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score =  144 bits (365), Expect = 5e-40
 Identities = 62/122 (50%), Positives = 80/122 (65%), Gaps = 1/122 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  W +  +F+ +C+  +VG+GNVWRFPYL    GGG FLIPYLIML+L G P+ +LELA
Sbjct: 4   RPLWDNPLQFVFACISYAVGLGNVWRFPYLCQMYGGGGFLIPYLIMLILEGMPLLYLELA 63

Query: 115 VGQFGGVGPLGLWNC-CPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           VGQ    G +G W    P   GVGVA V VS  + +YYNVI ++  +Y+F S Q  +PWS
Sbjct: 64  VGQRMRQGSIGAWKSISPYLGGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWS 123

Query: 174 KC 175
            C
Sbjct: 124 VC 125

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score =  143 bits (363), Expect = 7e-40
 Identities = 62/126 (49%), Positives = 86/126 (68%), Gaps = 1/126 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  W S+ +F+LS  G  VG+GNVWRFPYL Y+NGGGAFLIPY I L   G P++FLE+A
Sbjct: 1   REKWASKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGGGLPVFFLEVA 60

Query: 115 VGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           +GQ+   G +  W   CPI  G+G A + +  ++ IYY VI+++ LYY+F S Q ++PW+
Sbjct: 61  LGQYTSEGGITCWEKLCPIFTGIGYASIVIVSLLNIYYIVILAWGLYYLFQSFQSELPWA 120

Query: 174 KCDPEW 179
            C+  W
Sbjct: 121 HCNQSW 126

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score =  143 bits (362), Expect = 8e-40
 Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 1/122 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +W S+ +++L+ VG SVG+GNVWRFPYL  +NGGGA+L+PYLI+L++ G P++FLEL+
Sbjct: 1   RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLIVIGIPLFFLELS 60

Query: 115 VGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           VGQ    G +G+WN   P   G+G A   V L V +YYNVI+ ++L+Y   S Q+ +PW 
Sbjct: 61  VGQRIRRGSIGVWNYISPKLGGIGFASCIVCLFVALYYNVIIGWSLFYFSQSFQYPLPWD 120

Query: 174 KC 175
           +C
Sbjct: 121 QC 122

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score =  142 bits (360), Expect = 2e-39
 Identities = 62/127 (48%), Positives = 86/127 (67%), Gaps = 1/127 (0%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ERG W ++ EF+LS  G  +G+GNVWRFPYL Y+NGGGAFLIPYLI L   G P++FLE 
Sbjct: 1   ERGQWRNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYLIFLFTCGIPLFFLET 60

Query: 114 AVGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPW 172
           A+GQ+   G +  W   CPI +G+G A   +   + +YY +I+S+ L+Y+FSS    +PW
Sbjct: 61  ALGQYTSQGGVTAWRKICPIFEGIGYASQVIESYLNVYYIIILSWALFYLFSSFTSVLPW 120

Query: 173 SKCDPEW 179
           + C+  W
Sbjct: 121 ATCNNPW 127

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

 Score =  143 bits (361), Expect = 2e-39
 Identities = 57/125 (45%), Positives = 84/125 (67%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +W  + +F++SCVG +VG+GNVWRFPYL Y+NGGG FLIPYL+++ + G P++FLE+A
Sbjct: 1   RETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYLLIVFVGGIPVFFLEIA 60

Query: 115 VGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSK 174
           +GQF   G +  WN  P+ KG+G A + +      YY +I+ + LYY+  S    +PW+ 
Sbjct: 61  LGQFMKQGGINAWNIAPLFKGLGYASMVIVFFCNTYYIMILVWGLYYLVHSFTNTLPWAT 120

Query: 175 CDPEW 179
           C   W
Sbjct: 121 CGHPW 125

CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 592

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score =  140 bits (353), Expect = 3e-38
 Identities = 60/122 (49%), Positives = 86/122 (70%), Gaps = 1/122 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R +W S+ +++L+ VG SVG+GNVWRFPYL  +NGGGA+L+PYLI+L++ G P++FLEL+
Sbjct: 1   RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLLVIGIPLFFLELS 60

Query: 115 VGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           VGQ    G +G+WN   P   G+G A   V   V +YYNVI+ ++L+Y   S Q  +PW 
Sbjct: 61  VGQRIRRGSIGVWNYISPKLGGIGFASCIVCFFVALYYNVIIGWSLFYFSQSFQQPLPWD 120

Query: 174 KC 175
           +C
Sbjct: 121 QC 122

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score =  139 bits (351), Expect = 5e-38
 Identities = 59/122 (48%), Positives = 87/122 (71%), Gaps = 1/122 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  W ++ +++L+CVG  VG+GNVWRFPYL   +GGGAF+IP+LI+LV  G P+  LE A
Sbjct: 1   RPKWDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVFEGIPLLHLEFA 60

Query: 115 VGQFGGVGPLGLWNCC-PIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           +GQ    G +G+W+   P  KGVG+A + VS +V +YYN I+++ ++Y F+S Q  +PWS
Sbjct: 61  IGQRLRKGSVGVWSTIHPTLKGVGIASMCVSFLVSLYYNTIIAWVMWYFFNSFQEPLPWS 120

Query: 174 KC 175
           +C
Sbjct: 121 QC 122

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score =  138 bits (348), Expect = 1e-37
 Identities = 57/126 (45%), Positives = 86/126 (68%), Gaps = 1/126 (0%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           RG W ++ EF+LS  G  +G+GNVWRFPYL Y+NGGGAF IPYLI L   G P++FLE A
Sbjct: 1   RGQWNNKLEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETA 60

Query: 115 VGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
           +GQ+   G +  W   CP+ +G+G A   +  ++  YY +++++ L+Y+F+S  +++PWS
Sbjct: 61  LGQYTSQGGVTCWRKICPLFEGIGYASQVIVALLNFYYIIVLAWALFYLFNSFTWELPWS 120

Query: 174 KCDPEW 179
            C+  W
Sbjct: 121 SCNHTW 126

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain

 Score =  133 bits (338), Expect = 2e-36
 Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 3/119 (2%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  WGSR  F+L+ +G +VG+GN+WRFPY+AY+NGGGAFLIPYLI L+ AG P+  LE  
Sbjct: 1   REQWGSRLGFILAAIGSAVGLGNIWRFPYVAYENGGGAFLIPYLIALLTAGIPLLILEYG 60

Query: 115 VGQ-FGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPW 172
           +G  F G  PL         + +G   V V+ ++  YY VI+++ L Y+F S  F + W
Sbjct: 61  LGHKFRGSAPLAFRRINKKFEWIGWWQVLVAFVIATYYAVIIAWALSYLFFS--FTLAW 117

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 480

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score =  131 bits (330), Expect = 3e-35
 Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%)

Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           ERG W ++ EF+LS  G  +G+GNVWRFPYL Y+NGGGAFLIPY++  +  G P++FLE 
Sbjct: 1   ERGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLET 60

Query: 114 AVGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPW 172
           A+GQF   G +  W   CP+ +G+G A   +   + +YY +I+++ ++Y+F+    ++PW
Sbjct: 61  ALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLFNCFTTELPW 120

Query: 173 SKCDPEWADMSTCYVRGVNVS-MSHV 197
           + C  EW   +    + +N S  SHV
Sbjct: 121 ATCGHEWNTENCVEFQKLNSSNCSHV 146

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only]

 Score =  126 bits (318), Expect = 8e-34
 Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 3/117 (2%)

Query: 53  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLE 112
            +R  W SR  F+L+  G +VG+GN+WRFPY+A +NGGGAFL+PYLI L+L G P+   E
Sbjct: 3   EKREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAE 62

Query: 113 LAVGQFGGVGPLG-LWNCCP--IAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSL 166
            A+G+ G    +G      P    + +G   V    ++  +Y+VI  + L Y+  SL
Sbjct: 63  FAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSL 119

Length = 439

>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain

 Score =  120 bits (303), Expect = 1e-31
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 16/121 (13%)

Query: 56  GSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAV 115
             W SR  F+L+  G +VG+GN+WRFPYLA +NGGGAFL+ YL+ ++L G P+   E A+
Sbjct: 1   EQWSSRLGFILAAAGSAVGLGNIWRFPYLAGENGGGAFLLVYLLFVLLIGLPLLIAEFAI 60

Query: 116 GQFGGVGPLG----------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           G+     P+G           W      K VG   V  + ++  +Y+V+  + L Y+F S
Sbjct: 61  GRRTRKNPVGAFAKLAKGGKKW------KLVGWLGVLGAFLILSFYSVVGGWVLAYLFKS 114

Query: 166 L 166
           L
Sbjct: 115 L 115

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 439

>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain

 Score =  116 bits (292), Expect = 2e-30
 Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 3/117 (2%)

Query: 58  WGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQ 117
           WGSR  F+L+ +G +VG+GN+ RFP + Y NGG  F IPYL+ LVL   P+  LELA+GQ
Sbjct: 3   WGSRTAFVLAAMGGAVGLGNLLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELALGQ 62

Query: 118 FGGVGPLGLWNCC-PIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS 173
               G +  +N     AKGVG A+V    +VC YY  I+++ + Y   S  F V W 
Sbjct: 63  AYRGGCVKAFNLINRRAKGVGAAVVFGGFVVCTYYVPILAWIMVYFRHS--FTVGWL 117

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 406

>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain

 Score =  113 bits (285), Expect = 5e-29
 Identities = 51/120 (42%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  WGSR   +L+  G +VG+GN  RFP  A QNGGGAF+IPY I  +L G P+ ++E A
Sbjct: 1   REHWGSRIGLILAMAGNAVGLGNFLRFPVQAAQNGGGAFMIPYFIAFLLVGIPLMWVEWA 60

Query: 115 VGQFGG-----VGP---LGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSL 166
           +G++GG       P   L        AK +G     + L+V  YY  I S+TL Y F SL
Sbjct: 61  MGRYGGKHGHGTTPMIFLLAKR-NIFAKILGAIGFAIPLLVNSYYVYIESWTLGYAFKSL 119

LeuT is a bacterial amino acid transporter with specificity for the hydrophobic amino acids glycine, alanine, methionine, and leucine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family; LeuT has been used as a structural template for understanding fundamental aspects of SLC6 function. It has an arrangement of 12 transmembrane helices (TMs), which appears to be a common motif for eukaryotic and some prokaryotic and archaeal SLC6s: an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12. Length = 500

>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like; solute binding domain

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 7/103 (6%)

Query: 62  WEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGV 121
           W    S +  ++            Y  G    +I Y+    +    +    L +    G+
Sbjct: 1   WALGASLIAAAISAEQFIGMSGSGYSIGLAQ-IISYIWASAITLIILGKYFLPIFIEKGI 59

Query: 122 GPLG-----LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 159
             +       +N   +   + V  +++ L+       +    L
Sbjct: 60  YTIPEFVEKRFN-KRLKTILAVFWISLYLVNLTSVLYLGGLAL 101

This superfamily includes the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporters or solute sodium symporters), SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporters or Na+/Cl--dependent transporters), and nucleobase-cation-symport-1 (NCS1) transporters. SLC5s co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. SLC6s include Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin, dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. Members of this superfamily are important in human physiology and disease. They contain a functional core of 10 transmembrane helices (TMs): an inverted structural repeat, TMs1-5 and TMs6-10; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT. Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG3659|consensus	629		100.0
KOG3660|consensus	629		100.0
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	100.0
COG0733	439	Na+-dependent transporters of the SNF family [Gene	100.0

>KOG3659|consensus

Probab=100.00  E-value=8.3e-52  Score=403.90  Aligned_cols=197  Identities=36%  Similarity=0.761  Sum_probs=174.1

Q ss_pred             cccccCCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhhh-
Q psy11766         50 AAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWN-  128 (248)
Q Consensus        50 ~~~~~R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~~-  128 (248)
                      ++.++|++|++|+||+||++|+||+|||+|||||+|++||||+|++||++++++.|+||++||+++|||+|+|++++|+ 
T Consensus        73 ~e~e~R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~r  152 (629)
T KOG3659|consen   73 EELEQRPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRR  152 (629)
T ss_pred             hhhccCCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHH
Confidence            3445699999999999999999999999999999999999999999999999999999999999999999999999995 


Q ss_pred             hccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccccccccc---cccccccceeec
Q psy11766        129 CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVS---MSHVESARVCYS  205 (248)
Q Consensus       129 ~~p~~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LPW~~C~n~WNt~~~C~~~~~~~s---~~~~~s~~~~y~  205 (248)
                      ++|+++|||++++++++++.+||++|++|++||++.||++++||++|+|+||++ +|++...-.+   ..+.+++.++||
T Consensus       153 i~P~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s~n~~-~C~~~~~s~~~~~~~ek~s~a~ef~  231 (629)
T KOG3659|consen  153 IAPALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNSWNGP-NCFDPTWSKNCDEECEKTSPAQEFW  231 (629)
T ss_pred             hCHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCcccCC-CccCccccccCchhhhccchhHHHH
Confidence            669999999999999999999999999999999999999999999999999999 9998653211   124577899999


Q ss_pred             ccccccccccceecccCCCCCCCcccccCchhhhhhceeeccC
Q psy11766        206 PSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV  248 (248)
Q Consensus       206 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (248)
                      .+.+.++-=+|- -.-.=|+.++++.-+..-|++.+++.|||+
T Consensus       232 ~r~~l~l~~~~~-~~d~g~~~~~~~lc~~lv~~liyf~~~kG~  273 (629)
T KOG3659|consen  232 YRKVLGLSESHG-LDDLGGPSWTLALCLVLVWLLIYFSLWKGV  273 (629)
T ss_pred             Hhhccccccccc-ccccCCCchHHHHHHHHHHHHHHHHHhccc
Confidence            888766544331 122235788988888999999999999996

>KOG3660|consensus

Probab=100.00  E-value=8.4e-50  Score=396.78  Aligned_cols=198  Identities=43%  Similarity=0.851  Sum_probs=166.0

Q ss_pred             ccccccCCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhhh
Q psy11766         49 LAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWN  128 (248)
Q Consensus        49 ~~~~~~R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~~  128 (248)
                      ++++++|++|+||+||+|+|+|++|||||||||||+|++||||||||||+++++++|+|+++||+++|||+++|++.+||
T Consensus        28 ~~~~~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wr  107 (629)
T KOG3660|consen   28 SDAEPDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWR  107 (629)
T ss_pred             cccccccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHH
Confidence            34556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -hccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccccccc---------cccc
Q psy11766        129 -CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSM---------SHVE  198 (248)
Q Consensus       129 -~~p~~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LPW~~C~n~WNt~~~C~~~~~~~s~---------~~~~  198 (248)
                       .+|++||+|++++++++++++||+++++|+++|+++||+.+|||++|+|+|||+ +|.+.....+-         .+..
T Consensus       108 ri~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~-~c~~~~~~~~~~~~~~~~~~~~~~  186 (629)
T KOG3660|consen  108 RICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTE-YCLDGTSKQNCANLTKLSNALNFN  186 (629)
T ss_pred             HhChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCC-ccccccccccccccccccchhhhc
Confidence             679999999999999999999999999999999999999999999999999988 99875422111         1223


Q ss_pred             ccceeecccccccccccceecccCCCCCCCcccccCchhhhhhceeeccC
Q psy11766        199 SARVCYSPSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV  248 (248)
Q Consensus       199 s~~~~y~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (248)
                      +...+++++++.++-..+--..+| +..|..+--+...|++.++|++|||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~w~L~~~l~~~Wliv~~~i~KGv  235 (629)
T KOG3660|consen  187 SPVAEFWENRVLSLSDGSGIEDFG-SINWPLALCLALAWLIVFFCIWKGV  235 (629)
T ss_pred             cchhhhhhhhhcccccccccccCC-CCChHHHHHHHHHHHHHHHHHhhcc
Confidence            344455555544432211001122 1367777779999999999999997

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=100.00  E-value=2.5e-45  Score=357.06  Aligned_cols=190  Identities=39%  Similarity=0.846  Sum_probs=117.0

Q ss_pred             CCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhh-hhcccc
Q psy11766         55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIA  133 (248)
Q Consensus        55 R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~-~~~p~~  133 (248)
                      |++|+||++|+++++|++||+||+|||||+|++||||+|++||+++++++|+|++++|+++||++|+|++++| +.+|++
T Consensus         1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~   80 (523)
T PF00209_consen    1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF   80 (523)
T ss_dssp             ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999 556999


Q ss_pred             ccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCccccccc--------cccccccccceeec
Q psy11766        134 KGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVN--------VSMSHVESARVCYS  205 (248)
Q Consensus       134 kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LPW~~C~n~WNt~~~C~~~~~~--------~s~~~~~s~~~~y~  205 (248)
                      ||+|++++++++++++||+++++|+++|+++|+++++||++|+|+||++ +|.+...+        .+.++.+++.+||+
T Consensus        81 ~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~-~c~~~~~~~~~~~~~~~~~~~~~~~~~~ff  159 (523)
T PF00209_consen   81 KGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTP-NCYDIYSNCNCSNSSSYNFTQRISPAEEFF  159 (523)
T ss_dssp             HTHHHH---HHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999 99874432        22234578899999


Q ss_pred             ccccccccccceecccCCCCCCCcccccCchhhhhhceeeccC
Q psy11766        206 PSRISHVGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV  248 (248)
Q Consensus       206 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (248)
                      .++|.+..- .+ .+.| +..++...-+...|++.+.|..||+
T Consensus       160 ~~~vl~~s~-~i-~~~g-~~~~~l~~~l~~~w~iv~~~i~kGi  199 (523)
T PF00209_consen  160 YREVLQISD-GI-SDFG-SLSWQLLLCLFIVWLIVFFGIWKGI  199 (523)
T ss_dssp             ------------------------HHHHHHHHHHHTTTTTTTH
T ss_pred             ccccccccc-cc-cccc-chhHHHHHHHHHHHHHHHHheEecc
Confidence            999887441 11 1122 2355555557889999999999995

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=100.00  E-value=4e-34  Score=273.66  Aligned_cols=118  Identities=40%  Similarity=0.777  Sum_probs=115.5

Q ss_pred             cCCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhhhhc---
Q psy11766         54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNCC---  130 (248)
Q Consensus        54 ~R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~~~~---  130 (248)
                      +|++|+||.+||||++|+||||||+|||||+.++||||||++||+++++++|+|++++|+++||++|++++++++++   
T Consensus         4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~   83 (439)
T COG0733           4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPK   83 (439)
T ss_pred             cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999976   


Q ss_pred             cccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCC
Q psy11766        131 PIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVP  171 (248)
Q Consensus       131 p~~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LP  171 (248)
                      +.|+++|+..+++++++++||++|++|++.|++.|+++.+|
T Consensus        84 ~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~  124 (439)
T COG0733          84 KKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP  124 (439)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            67999999999999999999999999999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
3f3a_A	508	Crystal Structure Of Leut Bound To L-Tryptophan And		1e-16
3qs6_A	519	Crystal Structure Of Leut Mutant F259v,I359q Bound		1e-15
3qs5_A	519	Crystal Structure Of Leut Mutant I359q Bound To Sod		1e-15
3qs4_A	519	Crystal Structure Of Leut Mutant F259v Bound To Sod		1e-15
3tt3_A	519	Crystal Structure Of Leut In The Inward-Open Confor		1e-15
2a65_A	519	Crystal Structure Of Leutaa, A Bacterial Homolog Of		1e-15
3tu0_A	519	Crystal Structure Of T355v, S354a, K288a Leut Mutan		1e-15
4fxz_A	513	Crystal Structure Of Leut-F253a Bound To L-Leucine		1e-15
3gjc_A	513	Crystal Structure Of The E290s Mutant Of Leut With		1e-15
3gjd_A	515	Crystal Structure Of Leut With Bound Og Length = 51		1e-15
3mpq_A	507	I204r1 Mutant Of Leut Length = 507		1e-15
2qju_A	511	Crystal Structure Of An Nss Homolog With Bound Anti		2e-15
3mpn_A	507	F177r1 Mutant Of Leut Length = 507		2e-15
3f3d_A	517	Crystal Structure Of Leut Bound To L-Methionine And		2e-15
3tt1_A	519	Crystal Structure Of Leut In The Outward-Open Confo		3e-15

>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 1   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 60
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 61  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 119
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 120 LVGLVPEPPPNATDPD 135

>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E A
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 115 VGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSL 166
           +G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    L
Sbjct: 61  MGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL 119
Query: 167 QFDVPW---SKCDPE 178
              VP    +  DP+
Sbjct: 120 VGLVPEPPPNATDPD 134

>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E A
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 115 VGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSL 166
           +G++GG    G        LW     AK +GV  + + L+V IYY  I S+TL +    L
Sbjct: 61  MGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL 119
Query: 167 QFDVPW---SKCDPE 178
              VP    +  DP+
Sbjct: 120 VGLVPEPPPNATDPD 134

>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 54  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLEL 113
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E 
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEW 63
Query: 114 AVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
           A+G++GG    G        LW     AK +GV  + + L+V IY+  I S+TL +    
Sbjct: 64  AMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYFVYIESWTLGFAIKF 122
Query: 166 LQFDVPW---SKCDPE 178
           L   VP    +  DP+
Sbjct: 123 LVGLVPEPPPNATDPD 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	2e-35

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519

 Score =  131 bits (331), Expect = 2e-35
 Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 7/121 (5%)

Query: 53  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLE 112
            +R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E
Sbjct: 3   VKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIE 62

Query: 113 LAVGQFGGVGPLG-------LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSS 165
            A+G++GG    G       L      AK +GV  + + L+V IYY  I S+TL +    
Sbjct: 63  WAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF 122

Query: 166 L 166
           L
Sbjct: 123 L 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	100.0

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=100.00  E-value=1.1e-41  Score=331.69  Aligned_cols=174  Identities=30%  Similarity=0.409  Sum_probs=140.6

Q ss_pred             cCCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhh----cCCCChhhhhhh
Q psy11766         54 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQ----FGGVGPLGLWNC  129 (248)
Q Consensus        54 ~R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ----~~~~g~i~~~~~  129 (248)
                      +|++|+||++|+|||+|+||||||+|||||+|++||||||+|||+++++++|+|++++|+++||    ++|++++++|++
T Consensus         4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~   83 (519)
T 2a65_A            4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL   83 (519)
T ss_dssp             -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH
T ss_pred             ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999    888899999975


Q ss_pred             c-cc--cccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCC--CCCCCCCCCCCCCccccccccccccccccceee
Q psy11766        130 C-PI--AKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVP--WSKCDPEWADMSTCYVRGVNVSMSHVESARVCY  204 (248)
Q Consensus       130 ~-p~--~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LP--W~~C~n~WNt~~~C~~~~~~~s~~~~~s~~~~y  204 (248)
                      + |.  |+|+|++++++++++++||++|++|+++|+++||++++|  |++|+       +|.+.         .++..+|
T Consensus        84 l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~-------~~~~~---------~~~~~~~  147 (519)
T 2a65_A           84 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT-------DPDSI---------LRPFKEF  147 (519)
T ss_dssp             HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C-------CHHHH---------HHHHHHH
T ss_pred             hcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-------Ccccc---------cCcHHHH
Confidence            4 65  999999999999999999999999999999999999999  54432       12110         1223344


Q ss_pred             ccccccc-ccccceecccCCCCCCCcccccCchhhhhhceeeccC
Q psy11766        205 SPSRISH-VGISHVKASFACPPHTSPQSKCDPEWADMSTCYVRGV  248 (248)
Q Consensus       205 ~~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (248)
                      +.+.++. .++.+.    | ..+++...-+...|++++.|.+|||
T Consensus       148 f~~~l~~~~~~~~~----g-~~~~~~~~~~~~~w~i~~~ii~~Gv  187 (519)
T 2a65_A          148 LYSYIGVPKGDEPI----L-KPSLFAYIVFLITMFINVSILIRGI  187 (519)
T ss_dssp             HHHHHTCCSSSSCB----C-CCCHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHCCCCCcccc----c-CccHHHHHHHHHHHHHHHHHHHHhh
Confidence            4332221 111111    1 1245555557889999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	2e-46

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score =  159 bits (403), Expect = 2e-46
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 7/134 (5%)

Query: 55  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELA 114
           R  W +R   +L+  G +VG+GN  RFP  A +NGGGAF+IPY+I  +L G P+ ++E A
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60

Query: 115 VGQFGGVGPLGLWN-------CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQ 167
           +G++GG    G              AK +GV  + + L+V IYY  I S+TL +    L 
Sbjct: 61  MGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLV 120

Query: 168 FDVPWSKCDPEWAD 181
             VP    +    D
Sbjct: 121 GLVPEPPPNATDPD 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	100.0

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=5.4e-42  Score=327.55  Aligned_cols=128  Identities=38%  Similarity=0.636  Sum_probs=120.9

Q ss_pred             CCCCCchHHHHHHHHHhhhcCCceeecchhhhhcCCeeehHHHHHHHHHhhhhhHHHHHHhhhcCCCChhhhhhh-----
Q psy11766         55 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGAFLIPYLIMLVLAGKPMYFLELAVGQFGGVGPLGLWNC-----  129 (248)
Q Consensus        55 R~~W~sk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIpY~i~l~l~GiPll~lE~~lGQ~~~~g~i~~~~~-----  129 (248)
                      ||+|+||+||+||++|++||+||+|||||+|++||||+|+|||+++++++|+|++++|+++||++|++++++|+.     
T Consensus         1 R~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~   80 (509)
T d2a65a1           1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL   80 (509)
T ss_dssp             CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999986     


Q ss_pred             --ccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q psy11766        130 --CPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADM  182 (248)
Q Consensus       130 --~p~~kGIG~~~ili~fli~iYY~VIiaW~L~Yl~~Sf~~~LPW~~C~n~WNt~  182 (248)
                        .|++||+|++++++++++++||+++++|+++|+++++++++||+.|++++++.
T Consensus        81 ~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~~~~~~~~~~  135 (509)
T d2a65a1          81 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDS  135 (509)
T ss_dssp             SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHH
T ss_pred             ccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcccccCccc
Confidence              37889999999999999999999999999999999999999999997755443