Psyllid ID: psy11807

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYMLDLK
Secondary Structure (PSIPRED)
ccccccEEEEEcccccHHHHHHHHHHHccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccEEcHHHEcEEEEEcccccccccccEEcHHHHcccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDNDIMTCKTYCIFIFHEFCirgwcivgkkqicpyckekVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYMLDLK
Flexible Loop (DISEMBL)
MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYMLDLK
Low Complexity Region (SEG)
MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYMLDLK
Disordered region (IsUnstruct)
****IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYML***
Disordered Region (DISOPRED)
****IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYMLDLK
Disordered Region (DISEMBL)
MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYMLDLK
Disordered Region (DISPRO)
***DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYMLDLK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYMLDLK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q9H920	327	RING finger protein 121 O	yes	N/A	0.931	0.250	0.731	1e-32
Q6P360	327	RING finger protein 121 O	yes	N/A	0.931	0.250	0.743	2e-32
Q6DD32	327	RING finger protein 121 O	N/A	N/A	0.931	0.250	0.743	2e-32
Q8R1Z9	327	RING finger protein 121 O	yes	N/A	0.931	0.250	0.731	2e-32
Q8N4F7	328	RING finger protein 175 O	no	N/A	1.0	0.268	0.615	1e-28
Q09251	409	RING finger protein 121 O	yes	N/A	0.988	0.212	0.586	3e-26

>sp|Q9H920|RN121_HUMAN RING finger protein 121 OS=Homo sapiens GN=RNF121 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ ++QG+NY+L L+
Sbjct: 306 LVAWQPVIIGVVQGINYILGLE 327

Homo sapiens (taxid: 9606)

>sp|Q6P360|RN121_XENTR RING finger protein 121 OS=Xenopus tropicalis GN=rnf121 PE=2 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 69/82 (84%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY L L+
Sbjct: 306 LVAWQPVIIGLVQGINYCLGLE 327

Xenopus tropicalis (taxid: 8364)

>sp|Q6DD32|RN121_XENLA RING finger protein 121 OS=Xenopus laevis GN=rnf121 PE=2 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 69/82 (84%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY L L+
Sbjct: 306 LVAWQPVIIGLVQGINYCLGLE 327

Xenopus laevis (taxid: 8355)

>sp|Q8R1Z9|RN121_MOUSE RING finger protein 121 OS=Mus musculus GN=Rnf121 PE=2 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG++Y+L L+
Sbjct: 306 LVAWQPVIIGLVQGISYILGLE 327

Mus musculus (taxid: 10090)

>sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens GN=RNF175 PE=2 SV=2

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 3/91 (3%)

Query: 1   MDNDIMTCKTY---CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFY 57
           +D + +   TY   C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK M  N WE+ H  Y
Sbjct: 238 LDEEGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLY 297

Query: 58  GQLLDWLRWLVAWQPVILALIQGVNYMLDLK 88
           GQ+LDWLR+LVAWQPV++ ++QG+ Y L L+
Sbjct: 298 GQILDWLRYLVAWQPVVIGIVQGIIYSLGLE 328

Homo sapiens (taxid: 9606)

>sp|Q09251|RN121_CAEEL RING finger protein 121 OS=Caenorhabditis elegans GN=rnf-121 PE=3 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 65/87 (74%)

Query: 2   DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLL 61
           D D    K  C  +FHEFCIRGW +VGK Q CPYCKE+VDL+ MF N WEKPH+FYG+LL
Sbjct: 323 DEDEKLYKLSCGHVFHEFCIRGWVVVGKLQTCPYCKERVDLQRMFKNPWEKPHLFYGKLL 382

Query: 62  DWLRWLVAWQPVILALIQGVNYMLDLK 88
           DW+R+LV WQP+I+  +QG+   + L+
Sbjct: 383 DWIRYLVCWQPLIVTAVQGLTTWMGLE 409

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
334327863	491	PREDICTED: LOW QUALITY PROTEIN: RING fin	0.931	0.167	0.743	7e-32
213512041	332	RING finger protein 121 [Salmo salar] gi	0.931	0.246	0.756	1e-31
332211439	380	PREDICTED: RING finger protein 121 isofo	0.931	0.215	0.743	2e-31
403262158	359	PREDICTED: RING finger protein 121 [Saim	0.931	0.228	0.743	2e-31
291384350	327	PREDICTED: ring finger protein 121 [Oryc	0.931	0.250	0.743	2e-31
296217166	327	PREDICTED: RING finger protein 121 [Call	0.931	0.250	0.743	2e-31
90079427	327	unnamed protein product [Macaca fascicul	0.931	0.250	0.743	2e-31
302564285	327	RING finger protein 121 [Macaca mulatta]	0.931	0.250	0.743	2e-31
426245049	327	PREDICTED: RING finger protein 121 [Ovis	0.931	0.250	0.743	2e-31
301785237	327	PREDICTED: RING finger protein 121-like	0.931	0.250	0.743	2e-31

>gi|334327863|ref|XP_003341010.1| PREDICTED: LOW QUALITY PROTEIN: RING finger protein 121-like [Monodelphis domestica]

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/82 (74%), Positives = 69/82 (84%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 410 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 469

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY L L+
Sbjct: 470 LVAWQPVIIGLVQGINYTLGLE 491

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|213512041|ref|NP_001134947.1| RING finger protein 121 [Salmo salar] gi|209737476|gb|ACI69607.1| RING finger protein 121 [Salmo salar]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 71/82 (86%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQICPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 251 TYRLSCNHVFHEFCIRGWCIVGKKQICPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 310

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 311 LVAWQPVIIGLVQGINYILGLE 332

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332211439|ref|XP_003254826.1| PREDICTED: RING finger protein 121 isoform 1 [Nomascus leucogenys]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 299 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 358

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 359 LVAWQPVIIGLVQGINYILGLE 380

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403262158|ref|XP_003923462.1| PREDICTED: RING finger protein 121 [Saimiri boliviensis boliviensis]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 278 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 337

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 338 LVAWQPVIIGLVQGINYILGLE 359

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291384350|ref|XP_002708575.1| PREDICTED: ring finger protein 121 [Oryctolagus cuniculus]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 306 LVAWQPVIIGLVQGINYILGLE 327

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296217166|ref|XP_002754887.1| PREDICTED: RING finger protein 121 [Callithrix jacchus]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 306 LVAWQPVIIGLVQGINYILGLE 327

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|90079427|dbj|BAE89393.1| unnamed protein product [Macaca fascicularis]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 306 LVAWQPVIIGLVQGINYILGLE 327

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|302564285|ref|NP_001181544.1| RING finger protein 121 [Macaca mulatta] gi|395814917|ref|XP_003780984.1| PREDICTED: RING finger protein 121 [Otolemur garnettii] gi|402894520|ref|XP_003910403.1| PREDICTED: RING finger protein 121 [Papio anubis] gi|410972760|ref|XP_003992824.1| PREDICTED: RING finger protein 121 [Felis catus] gi|355566831|gb|EHH23210.1| RING finger protein 121 [Macaca mulatta]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 306 LVAWQPVIIGLVQGINYILGLE 327

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426245049|ref|XP_004016327.1| PREDICTED: RING finger protein 121 [Ovis aries]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 306 LVAWQPVIIGLVQGINYILGLE 327

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301785237|ref|XP_002928031.1| PREDICTED: RING finger protein 121-like [Ailuropoda melanoleuca]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 7   TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
           T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct: 246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query: 67  LVAWQPVILALIQGVNYMLDLK 88
           LVAWQPVI+ L+QG+NY+L L+
Sbjct: 306 LVAWQPVIIGLVQGINYVLGLE 327

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
UNIPROTKB|F1MM46	295	RNF121 "Uncharacterized protei	0.931	0.277	0.743	3.2e-33
UNIPROTKB|E2R5T4	327	RNF121 "Uncharacterized protei	0.931	0.250	0.743	3.2e-33
UNIPROTKB|B3KSW8	246	RNF121 "cDNA FLJ37189 fis, clo	0.931	0.333	0.731	6.7e-33
UNIPROTKB|E9PKE9	167	RNF121 "RING finger protein 12	0.931	0.491	0.731	6.7e-33
UNIPROTKB|G3V148	295	RNF121 "RING finger protein 12	0.931	0.277	0.731	6.7e-33
UNIPROTKB|Q9H920	327	RNF121 "RING finger protein 12	0.931	0.250	0.731	6.7e-33
MGI|MGI:1922462	327	Rnf121 "ring finger protein 12	0.931	0.250	0.731	1.1e-32
RGD|1307857	327	Rnf121 "ring finger protein 12	0.931	0.250	0.731	1.1e-32
FB|FBgn0030873	321	CG15814 [Drosophila melanogast	0.931	0.255	0.719	1.4e-32
UNIPROTKB|F1ND46	307	RNF121 "Uncharacterized protei	0.931	0.267	0.734	1.8e-32

UNIPROTKB|F1MM46 RNF121 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct:   214 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 273

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQPVI+ L+QG+NY+L L+
Sbjct:   274 LVAWQPVIIGLVQGINYILGLE 295

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R5T4 RNF121 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct:   246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQPVI+ L+QG+NY+L L+
Sbjct:   306 LVAWQPVIIGLVQGINYILGLE 327

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B3KSW8 RNF121 "cDNA FLJ37189 fis, clone BRALZ2002418, highly similar to Homo sapiens ring finger protein 121 (RNF121), transcript variant 3, mRNA" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct:   165 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 224

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQPVI+ ++QG+NY+L L+
Sbjct:   225 LVAWQPVIIGVVQGINYILGLE 246

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PKE9 RNF121 "RING finger protein 121" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct:    86 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 145

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQPVI+ ++QG+NY+L L+
Sbjct:   146 LVAWQPVIIGVVQGINYILGLE 167

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3V148 RNF121 "RING finger protein 121" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct:   214 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 273

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQPVI+ ++QG+NY+L L+
Sbjct:   274 LVAWQPVIIGVVQGINYILGLE 295

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9H920 RNF121 "RING finger protein 121" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct:   246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQPVI+ ++QG+NY+L L+
Sbjct:   306 LVAWQPVIIGVVQGINYILGLE 327

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1922462 Rnf121 "ring finger protein 121" [Mus musculus (taxid:10090)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct:   246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQPVI+ L+QG++Y+L L+
Sbjct:   306 LVAWQPVIIGLVQGISYILGLE 327

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1307857 Rnf121 "ring finger protein 121" [Rattus norvegicus (taxid:10116)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N WE+PHV YGQLLDWLR+
Sbjct:   246 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRY 305

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQPVI+ L+QG++Y+L L+
Sbjct:   306 LVAWQPVIIGLVQGISYILGLE 327

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0030873 CG15814 [Drosophila melanogaster (taxid:7227)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 59/82 (71%), Positives = 69/82 (84%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRW 66
             T K  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDL+ MF N WEKPHV YG+LLDW+RW
Sbjct:   240 TYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLQKMFRNPWEKPHVLYGRLLDWIRW 299

Query:    67 LVAWQPVILALIQGVNYMLDLK 88
             LVAWQP+I  ++QG+N+ML L+
Sbjct:   300 LVAWQPLIFFIVQGINWMLGLE 321

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1ND46 RNF121 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 61/83 (73%), Positives = 70/83 (84%)

Query:     7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN-LWEKPHVFYGQLLDWLR 65
             T +  C  +FHEFCIRGWCIVGKKQ CPYCKEKVDLK MF N  WE+PHV YGQLLDWLR
Sbjct:   225 TYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPYWERPHVMYGQLLDWLR 284

Query:    66 WLVAWQPVILALIQGVNYMLDLK 88
             +LVAWQPVI+ L+QG+NY+L L+
Sbjct:   285 YLVAWQPVIIGLVQGINYILGLE 307

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P360	RN121_XENTR	No assigned EC number	0.7439	0.9318	0.2507	yes	N/A
Q09251	RN121_CAEEL	No assigned EC number	0.5862	0.9886	0.2127	yes	N/A
Q8R1Z9	RN121_MOUSE	No assigned EC number	0.7317	0.9318	0.2507	yes	N/A
Q9H920	RN121_HUMAN	No assigned EC number	0.7317	0.9318	0.2507	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG1734|consensus	328		99.97
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.41
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.25
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.21
KOG4628|consensus	348		99.19
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.12
PHA02929	238	N1R/p28-like protein; Provisional	98.93
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.91
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.86
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.83
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.82
KOG0317|consensus	293		98.79
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.77
KOG0802|consensus	543		98.77
KOG1493|consensus	84		98.75
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.66
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.59
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.57
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.56
PF14634	44	zf-RING_5: zinc-RING finger domain	98.47
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.41
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.38
KOG2930|consensus	114		98.37
KOG0320|consensus	187		98.22
KOG0823|consensus	230		98.22
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.2
PHA02926	242	zinc finger-like protein; Provisional	98.13
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.99
KOG0828|consensus	636		97.96
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.95
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.88
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.88
KOG1941|consensus	518		97.83
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.79
KOG0827|consensus	465		97.75
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.73
KOG1645|consensus	463		97.66
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.51
KOG0287|consensus	442		97.39
KOG0804|consensus	493		97.38
KOG2164|consensus	513		97.28
PHA02862	156	5L protein; Provisional	97.02
KOG1785|consensus	563		96.93
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.85
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.84
KOG0824|consensus	324		96.83
KOG0825|consensus	1134		96.8
KOG0978|consensus	698		96.73
KOG2177|consensus	386		96.71
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.6
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.05
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.99
KOG0311|consensus	381		95.83
KOG4739|consensus	233		95.72
KOG4159|consensus	398		95.67
KOG1039|consensus	344		95.49
KOG3268|consensus	234		95.47
KOG1428|consensus	3738		95.4
KOG0297|consensus	391		95.34
KOG2114|consensus	933		95.05
KOG4265|consensus	349		95.04
KOG0827|consensus	465		94.77
KOG4172|consensus	62		93.32
KOG4185|consensus	296		93.24
KOG3970|consensus	299		93.07
KOG4445|consensus	368		93.03
PF04641	260	Rtf2: Rtf2 RING-finger	92.72
KOG1002|consensus	791		92.31
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	92.05
KOG1571|consensus	355		90.41
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	90.1
KOG2660|consensus	331		89.66
KOG2879|consensus	298		88.95
KOG1952|consensus	950		88.93
KOG2932|consensus	389		88.62
KOG2034|consensus	911		88.46
COG5222	427	Uncharacterized conserved protein, contains RING Z	88.23
PHA03096	284	p28-like protein; Provisional	87.45
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	86.92
KOG2817|consensus	394		86.87
KOG1940|consensus	276		85.77
KOG1814|consensus	445		85.41
COG5152	259	Uncharacterized conserved protein, contains RING a	84.91
KOG1001|consensus	674		84.85
KOG0309|consensus	1081		84.51
KOG3053|consensus	293		84.29
KOG1829|consensus	580		83.96
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	83.8
COG5236	493	Uncharacterized conserved protein, contains RING Z	83.67
KOG1609|consensus	323		82.5
KOG3113|consensus	293		81.74
KOG4275|consensus	350		80.93
KOG3899|consensus	381		80.92
KOG1813|consensus	313		80.03

>KOG1734|consensus

Probab=99.97  E-value=2.6e-32  Score=209.82  Aligned_cols=84  Identities=74%  Similarity=1.439  Sum_probs=82.1

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccCCCCCcchhhchhhhhccccchhHHHHHHHHHhhhh
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKPHVFYGQLLDWLRWLVAWQPVILALIQGVNYM   84 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p~~~~~~~~~~~ld~~r~~~~w~p~~~~~~~~~~~~   84 (88)
                      |++.+|.|+|+||+.||+.|..++||+|||+|+++||++++.+||||+++++|++++||+||+|.|+|+++.|||||++.
T Consensus       245 enty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWekph~~yg~LldwlRylVawqpvi~~iVqgin~~  324 (328)
T KOG1734|consen  245 ENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEKPHVWYGQLLDWLRYLVAWQPVIITIVQGINYY  324 (328)
T ss_pred             hhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC
Q psy11807         85 LDLK   88 (88)
Q Consensus        85 ~~~~   88 (88)
                      +||+
T Consensus       325 lgle  328 (328)
T KOG1734|consen  325 LGLE  328 (328)
T ss_pred             hccC
Confidence            9996

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.41  E-value=2.6e-14  Score=81.18  Aligned_cols=34  Identities=29%  Similarity=0.766  Sum_probs=28.9

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCK   37 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR   37 (88)
                      +.++.+..++|||.||.+||.+|++.  +.+||+||
T Consensus        11 ~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR   44 (44)
T PF13639_consen   11 EDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR   44 (44)
T ss_dssp             HTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred             cCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence            34788999999999999999999964  57999998

...

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.25  E-value=3.5e-12  Score=80.22  Aligned_cols=31  Identities=32%  Similarity=0.739  Sum_probs=24.9

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCK   37 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR   37 (88)
                      -.+..++|||.||.+||.+||+  .+.+||+||
T Consensus        43 ~~i~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR   73 (73)
T PF12678_consen   43 CPIVWGPCGHIFHFHCISQWLK--QNNTCPLCR   73 (73)
T ss_dssp             S-EEEETTSEEEEHHHHHHHHT--TSSB-TTSS
T ss_pred             cceEecccCCCEEHHHHHHHHh--cCCcCCCCC
Confidence            3456679999999999999994  466999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.21  E-value=7.9e-12  Score=81.92  Aligned_cols=38  Identities=29%  Similarity=0.601  Sum_probs=32.2

Q ss_pred             ceeecCCCCcCcHhhHHHHHhc-CCCCCCcccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIV-GKKQICPYCKEKVDLK   43 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~CR~~v~~~   43 (88)
                      .+....|+|.||.+||.+|+.. +.+++||+||+++..+
T Consensus        46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence            5666789999999999999975 3478999999998765

>KOG4628|consensus

Probab=99.19  E-value=1.1e-11  Score=97.83  Aligned_cols=42  Identities=24%  Similarity=0.520  Sum_probs=35.8

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      +.+|+++.|||+|.||..||+.||.. .+.+||+||+++....
T Consensus       240 ~~GdklRiLPC~H~FH~~CIDpWL~~-~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  240 EKGDKLRILPCSHKFHVNCIDPWLTQ-TRTFCPVCKRDIRTDS  281 (348)
T ss_pred             ccCCeeeEecCCCchhhccchhhHhh-cCccCCCCCCcCCCCC
Confidence            56899999999999999999999964 4568999999875443

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3e-11  Score=97.20  Aligned_cols=37  Identities=30%  Similarity=0.791  Sum_probs=32.6

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      +.+..+|||||+||-+|++.|+  ++++|||+||.++..
T Consensus       310 ~~~pKrLpCGHilHl~CLknW~--ERqQTCPICr~p~if  346 (491)
T COG5243         310 DMTPKRLPCGHILHLHCLKNWL--ERQQTCPICRRPVIF  346 (491)
T ss_pred             cCCcccccccceeeHHHHHHHH--HhccCCCcccCcccc
Confidence            4567899999999999999998  578999999999643

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.93  E-value=5.6e-10  Score=84.28  Aligned_cols=32  Identities=28%  Similarity=0.625  Sum_probs=27.7

Q ss_pred             eecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      ..++|||.||.+||.+|+.  .+++||+||+++.
T Consensus       196 vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~  227 (238)
T PHA02929        196 ILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFI  227 (238)
T ss_pred             ecCCCCCcccHHHHHHHHh--cCCCCCCCCCEee
Confidence            3458999999999999984  5789999999875

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.91  E-value=1.5e-09  Score=58.93  Aligned_cols=35  Identities=26%  Similarity=0.603  Sum_probs=27.8

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV   40 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v   40 (88)
                      +....++|||.||..|+++|+.. .+..||.||+.+
T Consensus        11 ~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~~   45 (45)
T cd00162          11 EPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTPI   45 (45)
T ss_pred             CceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence            34455569999999999999963 467899999864

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.5e-09  Score=85.59  Aligned_cols=39  Identities=23%  Similarity=0.537  Sum_probs=34.0

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      .+++.+.|||.|.||..||++|+. +-+..||+||.++.+
T Consensus       335 K~d~~~vlPC~H~FH~~Cv~kW~~-~y~~~CPvCrt~iPP  373 (374)
T COG5540         335 KNDRLRVLPCDHRFHVGCVDKWLL-GYSNKCPVCRTAIPP  373 (374)
T ss_pred             ccceEEEeccCceechhHHHHHHh-hhcccCCccCCCCCC
Confidence            356799999999999999999995 567899999998754

>smart00184 RING Ring finger

Probab=98.83  E-value=3.1e-09  Score=55.74  Aligned_cols=34  Identities=26%  Similarity=0.568  Sum_probs=28.5

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYC   36 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~C   36 (88)
                      +..+....++|||.||..|+++|+. ..+.+||.|
T Consensus         6 ~~~~~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C   39 (39)
T smart00184        6 EELKDPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC   39 (39)
T ss_pred             cCCCCcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence            3456788899999999999999996 456789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.82  E-value=1.9e-09  Score=70.63  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=31.1

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      ++....|+|.||.+||.+||.  .++.||++|+++...+
T Consensus        48 ~v~wG~CnHaFH~HCI~rWL~--Tk~~CPld~q~w~~~~   84 (88)
T COG5194          48 PVVWGVCNHAFHDHCIYRWLD--TKGVCPLDRQTWVLAD   84 (88)
T ss_pred             eEEEEecchHHHHHHHHHHHh--hCCCCCCCCceeEEec
Confidence            355668999999999999994  4789999999987654

>KOG0317|consensus

Probab=98.79  E-value=2.7e-09  Score=82.75  Aligned_cols=43  Identities=35%  Similarity=0.715  Sum_probs=36.4

Q ss_pred             CCCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          1 MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         1 m~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      |++-+....+||||+|.-.||.+|+  +.+..||.||+++..+++
T Consensus       246 Le~~~~pSaTpCGHiFCWsCI~~w~--~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  246 LENRSNPSATPCGHIFCWSCILEWC--SEKAECPLCREKFQPSKV  288 (293)
T ss_pred             ecCCCCCCcCcCcchHHHHHHHHHH--ccccCCCcccccCCCcce
Confidence            4556667788999999999999998  567899999999887654

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.77  E-value=3.6e-09  Score=61.41  Aligned_cols=38  Identities=24%  Similarity=0.523  Sum_probs=32.1

Q ss_pred             CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      ++...+..+||||. |...|+.+|+.  .+.+||+||++++
T Consensus        10 ~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~   48 (50)
T PF13920_consen   10 ENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE   48 (50)
T ss_dssp             SSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred             ccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence            45567888899999 99999999985  5679999999875

...

>KOG0802|consensus

Probab=98.77  E-value=1.9e-09  Score=88.01  Aligned_cols=32  Identities=34%  Similarity=0.908  Sum_probs=29.1

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV   40 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v   40 (88)
                      ..+|+|||+||.+|+++|++  ++++||+||..+
T Consensus       309 ~~rL~C~Hifh~~CL~~W~e--r~qtCP~CR~~~  340 (543)
T KOG0802|consen  309 PKRLPCGHIFHDSCLRSWFE--RQQTCPTCRTVL  340 (543)
T ss_pred             cceeecccchHHHHHHHHHH--HhCcCCcchhhh
Confidence            78999999999999999995  589999999954

>KOG1493|consensus

Probab=98.75  E-value=1.4e-09  Score=70.82  Aligned_cols=37  Identities=30%  Similarity=0.777  Sum_probs=30.0

Q ss_pred             eeecCCCCcCcHhhHHHHHhc-CCCCCCcccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIV-GKKQICPYCKEKVDLK   43 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~CR~~v~~~   43 (88)
                      +....|.|.||.+||.+|+.. +.+..||+||+.+..+
T Consensus        46 Lv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~   83 (84)
T KOG1493|consen   46 LVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK   83 (84)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence            334479999999999999954 4568999999987654

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.66  E-value=2.2e-08  Score=73.96  Aligned_cols=39  Identities=28%  Similarity=0.545  Sum_probs=30.9

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcC--------------CCCCCcccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVG--------------KKQICPYCKEKVDLK   43 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~--------------~~~tCP~CR~~v~~~   43 (88)
                      +..+.++|||.|+..||.+|+..+              ++..||+||+++...
T Consensus        29 ~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         29 RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            455678999999999999998531              246899999998543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.59  E-value=2.4e-08  Score=55.41  Aligned_cols=29  Identities=28%  Similarity=0.511  Sum_probs=24.2

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYC   36 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~C   36 (88)
                      .+..++|||.|..+||.+|++.  +.+||+|
T Consensus        11 ~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C   39 (39)
T PF13923_consen   11 PVVVTPCGHSFCKECIEKYLEK--NPKCPVC   39 (39)
T ss_dssp             EEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred             cCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence            3478899999999999999964  5799998

>smart00504 Ubox Modified RING finger domain

Probab=98.57  E-value=4.3e-08  Score=58.05  Aligned_cols=40  Identities=10%  Similarity=0.100  Sum_probs=33.7

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ...++|||+|-.+||.+|+..  +.+||.|++++..+++..+
T Consensus        14 Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l~~~   53 (63)
T smart00504       14 PVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHEDLIPN   53 (63)
T ss_pred             CEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChhhceeC
Confidence            567899999999999999953  6799999999877766554

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.56  E-value=4.9e-08  Score=54.00  Aligned_cols=30  Identities=27%  Similarity=0.569  Sum_probs=26.2

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYC   36 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~C   36 (88)
                      ...++|||.|+..||++|++.+....||.|
T Consensus        12 ~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen   12 VILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            348899999999999999975667889998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.47  E-value=1.3e-07  Score=53.87  Aligned_cols=34  Identities=32%  Similarity=0.640  Sum_probs=29.5

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKE   38 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~   38 (88)
                      +++....++|||+|...|+.+..  ++...||+||+
T Consensus        11 ~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k   44 (44)
T PF14634_consen   11 EERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK   44 (44)
T ss_pred             CCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence            45678889999999999999996  56789999996

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.41  E-value=2.1e-07  Score=53.04  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=23.4

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCC--CCCccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKK--QICPYC   36 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~--~tCP~C   36 (88)
                      ++.++|+|||.|-..||.+|.+....  ..||.|
T Consensus         9 ~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    9 KDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            56789999999999999999964333  379988

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.38  E-value=2.8e-07  Score=54.24  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             CCCceeecCCC-----CcCcHhhHHHHHhcCCCCCCcccc
Q psy11807          3 NDIMTCKTYCI-----FIFHEFCIRGWCIVGKKQICPYCK   37 (88)
Q Consensus         3 ~~e~~~~L~C~-----H~FH~~CI~~Wl~~~~~~tCP~CR   37 (88)
                      .++.....||.     |.+|..|+++|+..+++.+||+|+
T Consensus        10 ~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744       10 DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            45566678986     999999999999777678999995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG2930|consensus

Probab=98.37  E-value=1.6e-07  Score=64.16  Aligned_cols=36  Identities=22%  Similarity=0.538  Sum_probs=30.6

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      +....|+|.||.+||.+||+  .++.||+|.+++..++
T Consensus        76 VaWG~CNHaFH~hCisrWlk--tr~vCPLdn~eW~~qr  111 (114)
T KOG2930|consen   76 VAWGVCNHAFHFHCISRWLK--TRNVCPLDNKEWVFQR  111 (114)
T ss_pred             EEeeecchHHHHHHHHHHHh--hcCcCCCcCcceeEee
Confidence            45568999999999999995  4689999999987664

>KOG0320|consensus

Probab=98.22  E-value=5.2e-07  Score=66.38  Aligned_cols=37  Identities=27%  Similarity=0.582  Sum_probs=31.6

Q ss_pred             eecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      ....|||+|.+.||++=++  +...||+||++++.+++.
T Consensus       147 vsTkCGHvFC~~Cik~alk--~~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  147 VSTKCGHVFCSQCIKDALK--NTNKCPTCRKKITHKQFH  183 (187)
T ss_pred             cccccchhHHHHHHHHHHH--hCCCCCCcccccchhhhe
Confidence            5579999999999999985  457899999999887653

>KOG0823|consensus

Probab=98.22  E-value=9.5e-07  Score=66.83  Aligned_cols=42  Identities=26%  Similarity=0.525  Sum_probs=34.2

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhc-CCCCCCcccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIV-GKKQICPYCKEKVDLK   43 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~CR~~v~~~   43 (88)
                      |-.+..+...|||.|.--||-+||.. ..++.||+||..|..+
T Consensus        55 d~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   55 DLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             cccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            34456677799999999999999965 4567889999998654

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.20  E-value=9.6e-07  Score=70.98  Aligned_cols=40  Identities=25%  Similarity=0.505  Sum_probs=31.8

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ...++|||.|+..||.+|+.  ....||.||+.+....+..|
T Consensus        39 PvitpCgH~FCs~CI~~~l~--~~~~CP~Cr~~~~~~~Lr~N   78 (397)
T TIGR00599        39 PVLTSCSHTFCSLCIRRCLS--NQPKCPLCRAEDQESKLRSN   78 (397)
T ss_pred             ccCCCCCCchhHHHHHHHHh--CCCCCCCCCCccccccCccc
Confidence            45689999999999999984  35689999999876554433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02926 zinc finger-like protein; Provisional

Probab=98.13  E-value=1.3e-06  Score=66.40  Aligned_cols=34  Identities=26%  Similarity=0.603  Sum_probs=26.5

Q ss_pred             eecCCCCcCcHhhHHHHHhcC----CCCCCcccccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVG----KKQICPYCKEKVD   41 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~----~~~tCP~CR~~v~   41 (88)
                      ...+|+|.|+..||++|-...    ...+||+||+...
T Consensus       193 IL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        193 LLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            344899999999999998521    1356999999765

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.99  E-value=1.2e-06  Score=54.71  Aligned_cols=33  Identities=27%  Similarity=0.784  Sum_probs=19.5

Q ss_pred             CCCCcCcHhhHHHHHhc---CC------CCCCcccccccccc
Q psy11807         11 YCIFIFHEFCIRGWCIV---GK------KQICPYCKEKVDLK   43 (88)
Q Consensus        11 ~C~H~FH~~CI~~Wl~~---~~------~~tCP~CR~~v~~~   43 (88)
                      .|+..||..|+.+||..   ++      ..+||.|++++..+
T Consensus        27 ~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen   27 SCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             T----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             ccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            69999999999999953   11      13699999998654

>KOG0828|consensus

Probab=97.96  E-value=2.5e-06  Score=70.98  Aligned_cols=34  Identities=35%  Similarity=0.698  Sum_probs=28.5

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      -...||.|+||..|+++|+. ..|-.||.||.++.
T Consensus       601 Ym~tPC~HifH~~CL~~WMd-~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  601 YMLTPCHHIFHRQCLLQWMD-TYKLICPVCRCPLP  634 (636)
T ss_pred             ccccchHHHHHHHHHHHHHh-hhcccCCccCCCCC
Confidence            34569999999999999985 35679999999865

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.95  E-value=7.8e-06  Score=50.93  Aligned_cols=42  Identities=10%  Similarity=0.112  Sum_probs=32.4

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ..+.+++||+|=..||.+|+. ....+||.|++++..+++..|
T Consensus        16 dPVi~~~G~tyer~~I~~~l~-~~~~~~P~t~~~l~~~~l~pn   57 (73)
T PF04564_consen   16 DPVILPSGHTYERSAIERWLE-QNGGTDPFTRQPLSESDLIPN   57 (73)
T ss_dssp             SEEEETTSEEEEHHHHHHHHC-TTSSB-TTT-SB-SGGGSEE-
T ss_pred             CceeCCcCCEEcHHHHHHHHH-cCCCCCCCCCCcCCcccceEC
Confidence            467789999999999999995 347899999999988877665

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=6.7e-06  Score=63.45  Aligned_cols=44  Identities=27%  Similarity=0.535  Sum_probs=35.7

Q ss_pred             CCCCCceeecCCCCcCcHhhHHH-HHhcCCCCCCcccccccccccc
Q psy11807          1 MDNDIMTCKTYCIFIFHEFCIRG-WCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         1 m~~~e~~~~L~C~H~FH~~CI~~-Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      |+.-+....++|||+|.-.||.. |-. .+-..||.||+.+.++.+
T Consensus       222 ~e~~~~ps~t~CgHlFC~~Cl~~~~t~-~k~~~CplCRak~~pk~v  266 (271)
T COG5574         222 LEEPEVPSCTPCGHLFCLSCLLISWTK-KKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ecccCCcccccccchhhHHHHHHHHHh-hccccCchhhhhccchhh
Confidence            35566778889999999999999 974 445569999999987764

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.88  E-value=1.3e-05  Score=62.86  Aligned_cols=70  Identities=16%  Similarity=0.356  Sum_probs=52.1

Q ss_pred             CCCCcCcHhhHHHHHhcCCCCCCccccccccccc----ccccC---------------CCCCcchhhchhhhhccccchh
Q psy11807         11 YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL----MFVNL---------------WEKPHVFYGQLLDWLRWLVAWQ   71 (88)
Q Consensus        11 ~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~----~~~~p---------------~~~~~~~~~~~ld~~r~~~~w~   71 (88)
                      +|||.|...||+.-+. .....||.|++.+..++    ++.++               +.+++-.|..+.+.=-|+=.-.
T Consensus        25 ~CGH~~C~sCv~~l~~-~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRkrv~~i~Nk~e~dF~~l~~yNdYLE~vE  103 (309)
T TIGR00570        25 VCGHTLCESCVDLLFV-RGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRKRVLKIYNKREEDFPSLREYNDYLEEVE  103 (309)
T ss_pred             CCCCcccHHHHHHHhc-CCCCCCCCCCCccchhhccccccccHHHHHHHHHHHHHHHHHccchhccCCHHHHHHHHHHHH
Confidence            7999999999999764 34568999999887665    23332               4567777777777777777777


Q ss_pred             HHHHHHHHHh
Q psy11807         72 PVILALIQGV   81 (88)
Q Consensus        72 p~~~~~~~~~   81 (88)
                      .++|-++++|
T Consensus       104 dii~nL~~~~  113 (309)
T TIGR00570       104 DIVYNLTNNI  113 (309)
T ss_pred             HHHHHhhcCC
Confidence            7777777765

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1941|consensus

Probab=97.83  E-value=5.5e-06  Score=67.58  Aligned_cols=37  Identities=22%  Similarity=0.430  Sum_probs=32.7

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEK   39 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~   39 (88)
                      .+|+.-.|||.|+||..|+.+-|+.+...+||.||+-
T Consensus       378 k~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl  414 (518)
T KOG1941|consen  378 KNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL  414 (518)
T ss_pred             CcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            4678889999999999999999987778899999943

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.79  E-value=1.6e-05  Score=45.81  Aligned_cols=32  Identities=16%  Similarity=0.340  Sum_probs=20.1

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcC--CCCCCc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVG--KKQICP   34 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~--~~~tCP   34 (88)
                      .+.....|+|||+|-++||+++...+  ..-.||
T Consensus        10 ~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen   10 EENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             TSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            34457889999999999999999643  344676

>KOG0827|consensus

Probab=97.75  E-value=1.3e-05  Score=65.21  Aligned_cols=39  Identities=31%  Similarity=0.609  Sum_probs=29.0

Q ss_pred             CCCceeec-CCCCcCcHhhHHHHHhcCCC-CCCcccccccc
Q psy11807          3 NDIMTCKT-YCIFIFHEFCIRGWCIVGKK-QICPYCKEKVD   41 (88)
Q Consensus         3 ~~e~~~~L-~C~H~FH~~CI~~Wl~~~~~-~tCP~CR~~v~   41 (88)
                      +++++-.. .|||+||..|+..|++-... .+||+||-.+.
T Consensus        16 ~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen   16 NDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             cccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            34455555 49999999999999975433 58999995443

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.73  E-value=1.5e-05  Score=70.57  Aligned_cols=31  Identities=26%  Similarity=0.784  Sum_probs=28.2

Q ss_pred             CCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807         11 YCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus        11 ~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      .|.|-||..|+-+|++.+.+++||.||.++.
T Consensus      1493 TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1493 TCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            5999999999999999888999999997654

>KOG1645|consensus

Probab=97.66  E-value=2.1e-05  Score=64.07  Aligned_cols=45  Identities=22%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             CCCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          1 MDNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         1 m~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      |.++.++..|.|||.|-++||++||....+..||.|..+...+.+
T Consensus        16 ~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i   60 (463)
T KOG1645|consen   16 TAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQI   60 (463)
T ss_pred             ecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHH
Confidence            467888999999999999999999964456799999987654433

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.51  E-value=5.9e-05  Score=59.83  Aligned_cols=36  Identities=33%  Similarity=0.740  Sum_probs=30.0

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      ....+|||.|..-||++-|  +.+..||.||++..-..
T Consensus        38 p~~TtCgHtFCslCIR~hL--~~qp~CP~Cr~~~~esr   73 (391)
T COG5432          38 PCETTCGHTFCSLCIRRHL--GTQPFCPVCREDPCESR   73 (391)
T ss_pred             ceecccccchhHHHHHHHh--cCCCCCccccccHHhhh
Confidence            3456899999999999998  67899999999864443

>KOG0287|consensus

Probab=97.39  E-value=8.5e-05  Score=59.84  Aligned_cols=39  Identities=31%  Similarity=0.479  Sum_probs=31.8

Q ss_pred             eecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ...||||.|..-||+..|  +.+..||.|+..+.-..+..|
T Consensus        37 ~itpCsHtfCSlCIR~~L--~~~p~CP~C~~~~~Es~Lr~n   75 (442)
T KOG0287|consen   37 MITPCSHTFCSLCIRKFL--SYKPQCPTCCVTVTESDLRNN   75 (442)
T ss_pred             eeccccchHHHHHHHHHh--ccCCCCCceecccchhhhhhh
Confidence            445899999999999998  568999999998865555443

>KOG0804|consensus

Probab=97.38  E-value=8.3e-05  Score=61.15  Aligned_cols=32  Identities=25%  Similarity=0.596  Sum_probs=27.2

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      .+.+..|.|.||..|+.+|-    ..+||+||---.
T Consensus       191 gi~t~~c~Hsfh~~cl~~w~----~~scpvcR~~q~  222 (493)
T KOG0804|consen  191 GILTILCNHSFHCSCLMKWW----DSSCPVCRYCQS  222 (493)
T ss_pred             ceeeeecccccchHHHhhcc----cCcChhhhhhcC
Confidence            46788999999999999994    568999997644

>KOG2164|consensus

Probab=97.28  E-value=0.00017  Score=59.79  Aligned_cols=47  Identities=26%  Similarity=0.465  Sum_probs=37.0

Q ss_pred             eeecCCCCcCcHhhHHHHHhcC---CCCCCcccccccccccccccCCCCC
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVG---KKQICPYCKEKVDLKLMFVNLWEKP   53 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~---~~~tCP~CR~~v~~~~~~~~p~~~~   53 (88)
                      .....|||+|.-.||.+.+..+   .-..||+||..|.++++..-+|+..
T Consensus       199 p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~  248 (513)
T KOG2164|consen  199 PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD  248 (513)
T ss_pred             ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence            3445699999999999987544   3458999999999988877777653

>PHA02862 5L protein; Provisional

Probab=97.02  E-value=0.00039  Score=50.00  Aligned_cols=33  Identities=30%  Similarity=0.644  Sum_probs=28.5

Q ss_pred             CcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807         14 FIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus        14 H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      -.-|++|+.+|+..+++.+||.|+.+...+...
T Consensus        26 K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~y   58 (156)
T PHA02862         26 KVVHIKCMQLWINYSKKKECNLCKTKYNIKKTY   58 (156)
T ss_pred             hhHHHHHHHHHHhcCCCcCccCCCCeEEEEEcc
Confidence            458999999999888999999999998766544

>KOG1785|consensus

Probab=96.93  E-value=0.00041  Score=57.11  Aligned_cols=40  Identities=23%  Similarity=0.577  Sum_probs=33.6

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      +++..+..=||||.....|+..|-..+..++||.||.++.
T Consensus       377 endKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  377 ENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             ccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            5666777779999999999999975444789999998874

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.85  E-value=0.001  Score=48.26  Aligned_cols=33  Identities=24%  Similarity=0.637  Sum_probs=28.1

Q ss_pred             cCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807         15 IFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV   47 (88)
Q Consensus        15 ~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~   47 (88)
                      .-|.+|+++|+..+++.+||.|+++...+...+
T Consensus        33 ~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~k   65 (162)
T PHA02825         33 IVHKECLEEWINTSKNKSCKICNGPYNIKKNYK   65 (162)
T ss_pred             HHHHHHHHHHHhcCCCCcccccCCeEEEEEecC
Confidence            459999999998888899999999988775444

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.84  E-value=0.00027  Score=44.40  Aligned_cols=40  Identities=30%  Similarity=0.573  Sum_probs=19.1

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      +.+....|.|+|.+.||.+=+  +  ..||+|+.+.-.+++..|
T Consensus        19 ~pv~l~~CeH~fCs~Ci~~~~--~--~~CPvC~~Paw~qD~~~N   58 (65)
T PF14835_consen   19 EPVCLGGCEHIFCSSCIRDCI--G--SECPVCHTPAWIQDIQIN   58 (65)
T ss_dssp             S-B---SSS--B-TTTGGGGT--T--TB-SSS--B-S-SS----
T ss_pred             CCceeccCccHHHHHHhHHhc--C--CCCCCcCChHHHHHHHhh
Confidence            445567999999999999865  3  359999999877776554

>KOG0824|consensus

Probab=96.83  E-value=0.00047  Score=54.40  Aligned_cols=37  Identities=27%  Similarity=0.639  Sum_probs=31.4

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ....|+|+|.|...||+.=.. ..+.+||+||.+++..
T Consensus        19 ~Pv~l~C~HkFCyiCiKGsy~-ndk~~CavCR~pids~   55 (324)
T KOG0824|consen   19 CPVNLYCFHKFCYICIKGSYK-NDKKTCAVCRFPIDST   55 (324)
T ss_pred             cCccccccchhhhhhhcchhh-cCCCCCceecCCCCcc
Confidence            347899999999999999774 5678999999999754

>KOG0825|consensus

Probab=96.80  E-value=0.00054  Score=60.03  Aligned_cols=33  Identities=21%  Similarity=0.487  Sum_probs=27.5

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      ...-+|+|.||.+||..|-..  -+|||+||..+.
T Consensus       139 ~~~k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  139 ESEKHTAHYFCEECVGSWSRC--AQTCPVDRGEFG  171 (1134)
T ss_pred             ccccccccccHHHHhhhhhhh--cccCchhhhhhh
Confidence            345689999999999999753  579999998764

>KOG0978|consensus

Probab=96.73  E-value=0.00063  Score=58.33  Aligned_cols=37  Identities=22%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             eecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      +...|||+|...||++=+. .+...||.|-+.+.+.++
T Consensus       657 vI~kC~H~FC~~Cvq~r~e-tRqRKCP~Cn~aFganDv  693 (698)
T KOG0978|consen  657 VITKCGHVFCEECVQTRYE-TRQRKCPKCNAAFGANDV  693 (698)
T ss_pred             HHHhcchHHHHHHHHHHHH-HhcCCCCCCCCCCCcccc
Confidence            4458999999999999997 477899999998876653

>KOG2177|consensus

Probab=96.71  E-value=0.00082  Score=46.55  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=25.5

Q ss_pred             eecCCCCcCcHhhHHHHHhcCCCCCCccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKE   38 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~   38 (88)
                      ..|+|||.|...||..+..  ....||.||.
T Consensus        27 ~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~   55 (386)
T KOG2177|consen   27 VLLPCGHNFCRACLTRSWE--GPLSCPVCRP   55 (386)
T ss_pred             ccccccchHhHHHHHHhcC--CCcCCcccCC
Confidence            7789999999999999985  4578999993

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.60  E-value=0.00079  Score=40.73  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=22.9

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPY   35 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~   35 (88)
                      ++++...|||+|=++.|.+++..++...||+
T Consensus        23 ~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   23 DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            5667789999999999999995566788998

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.05  E-value=0.002  Score=37.42  Aligned_cols=29  Identities=21%  Similarity=0.545  Sum_probs=20.7

Q ss_pred             eecCCC-----CcCcHhhHHHHHhcCCCCCCccc
Q psy11807          8 CKTYCI-----FIFHEFCIRGWCIVGKKQICPYC   36 (88)
Q Consensus         8 ~~L~C~-----H~FH~~CI~~Wl~~~~~~tCP~C   36 (88)
                      ...||+     -.-|.+|+++|+..+++.+|++|
T Consensus        14 li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen   14 LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            445665     36799999999987677889988

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.99  E-value=0.0034  Score=38.30  Aligned_cols=38  Identities=16%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      +.+-..++|||.--..|-..+    +-+.||.|-++++..++
T Consensus        17 ~~~~~~~pCgH~I~~~~f~~~----rYngCPfC~~~~~~~~~   54 (55)
T PF14447_consen   17 GTKGTVLPCGHLICDNCFPGE----RYNGCPFCGTPFEFDDP   54 (55)
T ss_pred             ccccccccccceeeccccChh----hccCCCCCCCcccCCCC
Confidence            455678899999999998876    56789999999987653

>KOG0311|consensus

Probab=95.83  E-value=0.0021  Score=51.73  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=29.3

Q ss_pred             cCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807         10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus        10 L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      -.|+|-|..+||..=+. ..+++||.||+...++.
T Consensus        60 keClhrfc~~ci~~a~r-~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   60 KECLHRFCFDCIWKALR-SGNNECPTCRKKLVSKR   93 (381)
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCCCchHHhhccccc
Confidence            46999999999999986 45789999999987764

>KOG4739|consensus

Probab=95.72  E-value=0.0048  Score=46.96  Aligned_cols=41  Identities=22%  Similarity=0.495  Sum_probs=32.4

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      .+....+.|+|+|...|...=    ....||+||+.+...++..+
T Consensus        15 ~~~f~LTaC~HvfC~~C~k~~----~~~~C~lCkk~ir~i~l~~s   55 (233)
T KOG4739|consen   15 QDPFFLTACRHVFCEPCLKAS----SPDVCPLCKKSIRIIQLNRS   55 (233)
T ss_pred             CCceeeeechhhhhhhhcccC----Cccccccccceeeeeecccc
Confidence            456677899999999998763    33489999999877776555

>KOG4159|consensus

Probab=95.67  E-value=0.0076  Score=48.76  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=28.8

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      +..++||||.|...||.+=+  +++..||.||..+.
T Consensus        96 ~pv~tpcghs~c~~Cl~r~l--d~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   96 PPVVTPCGHSFCLECLDRSL--DQETECPLCRDELV  129 (398)
T ss_pred             CCccccccccccHHHHHHHh--ccCCCCcccccccc
Confidence            45677999999999999944  67889999998875

>KOG1039|consensus

Probab=95.49  E-value=0.0069  Score=48.19  Aligned_cols=32  Identities=28%  Similarity=0.731  Sum_probs=25.6

Q ss_pred             cCCCCcCcHhhHHHHHhcCC-----CCCCcccccccc
Q psy11807         10 TYCIFIFHEFCIRGWCIVGK-----KQICPYCKEKVD   41 (88)
Q Consensus        10 L~C~H~FH~~CI~~Wl~~~~-----~~tCP~CR~~v~   41 (88)
                      .+|.|.|...||+.|=...+     ...||.||....
T Consensus       185 pnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  185 PNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             CCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            46999999999999963333     378999998754

>KOG3268|consensus

Probab=95.47  E-value=0.0086  Score=44.92  Aligned_cols=35  Identities=31%  Similarity=0.838  Sum_probs=27.8

Q ss_pred             ecCCCCcCcHhhHHHHHhc---CCC------CCCcccccccccc
Q psy11807          9 KTYCIFIFHEFCIRGWCIV---GKK------QICPYCKEKVDLK   43 (88)
Q Consensus         9 ~L~C~H~FH~~CI~~Wl~~---~~~------~tCP~CR~~v~~~   43 (88)
                      ...||-.||.-|+..||..   +++      ..||+|.+++..+
T Consensus       187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            3579999999999999942   222      4699999998765

>KOG1428|consensus

Probab=95.40  E-value=0.012  Score=55.25  Aligned_cols=37  Identities=32%  Similarity=0.550  Sum_probs=28.4

Q ss_pred             CceeecCCCCcCcHhhHHHHHhc---C-----CCCCCcccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIV---G-----KKQICPYCKEKVD   41 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~---~-----~~~tCP~CR~~v~   41 (88)
                      .+.++|.|+|+||.+|.++=|+.   +     +--+||+|+++++
T Consensus      3500 AP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3500 APAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             CcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            45688999999999999865531   1     1247999999985

>KOG0297|consensus

Probab=95.34  E-value=0.008  Score=47.97  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=29.1

Q ss_pred             cCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807         10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus        10 L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      ..|||.|...|+..|+.  .++.||.||......+.
T Consensus        38 ~~cgh~fC~~C~~~~~~--~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   38 TTCGHRFCAGCLLESLS--NHQKCPVCRQELTQAEE   71 (391)
T ss_pred             CCCCCcccccccchhhc--cCcCCcccccccchhhc
Confidence            69999999999999995  37899999988766543

>KOG2114|consensus

Probab=95.05  E-value=0.0099  Score=52.29  Aligned_cols=30  Identities=23%  Similarity=0.650  Sum_probs=24.0

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV   40 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v   40 (88)
                      +.+...|||.||.+|+.     .+...||.|+.+.
T Consensus       853 P~VhF~CgHsyHqhC~e-----~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  853 PFVHFLCGHSYHQHCLE-----DKEDKCPKCLPEL  882 (933)
T ss_pred             ceeeeecccHHHHHhhc-----cCcccCCccchhh
Confidence            45667899999999999     2456799999844

>KOG4265|consensus

Probab=95.04  E-value=0.015  Score=46.49  Aligned_cols=40  Identities=15%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             CCCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          1 MDNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         1 m~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      |++......|||.|. ....|-+.--  -..+.||+||+++..
T Consensus       297 lse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  297 LSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEE  337 (349)
T ss_pred             ecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHh
Confidence            455567788999997 8999988764  234679999999853

>KOG0827|consensus

Probab=94.77  E-value=0.0028  Score=51.84  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      +++..+.|||.+|.+||.+||..  +..||.||..++..
T Consensus       211 ~k~~~~~~g~~~~~~kL~k~L~~--~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  211 DKISAIVCGHIYHHGKLSKWLAT--KRKLPSCRRELPKN  247 (465)
T ss_pred             HHHHHHhhcccchhhHHHHHHHH--HHHhHHHHhhhhhh
Confidence            45667899999999999999953  67899999988654

>KOG4172|consensus

Probab=93.32  E-value=0.025  Score=35.00  Aligned_cols=32  Identities=16%  Similarity=0.309  Sum_probs=23.1

Q ss_pred             ecCCCCc-CcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          9 KTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         9 ~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      .-.|||. ..-+|-.+-++ ..+.+||+||+++.
T Consensus        22 lYtCGHMCmCy~Cg~rl~~-~~~g~CPiCRapi~   54 (62)
T KOG4172|consen   22 LYTCGHMCMCYACGLRLKK-ALHGCCPICRAPIK   54 (62)
T ss_pred             HHHcchHHhHHHHHHHHHH-ccCCcCcchhhHHH
Confidence            3469997 56677655443 46789999999863

>KOG4185|consensus

Probab=93.24  E-value=0.069  Score=40.12  Aligned_cols=38  Identities=18%  Similarity=0.478  Sum_probs=31.5

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      ++.-++.|.|||.+-..|+..=+. +....||.||+..+
T Consensus        18 ~~~~p~~l~c~h~~c~~c~~~l~~-~~~i~cpfcR~~~~   55 (296)
T KOG4185|consen   18 GDHIPRVLKCGHTICQNCASKLLG-NSRILCPFCRETTE   55 (296)
T ss_pred             cccCCcccccCceehHhHHHHHhc-CceeeccCCCCccc
Confidence            456678899999999999988774 55678999999853

>KOG3970|consensus

Probab=93.07  E-value=0.07  Score=41.39  Aligned_cols=36  Identities=22%  Similarity=0.491  Sum_probs=28.6

Q ss_pred             ceeecCCCCcCcHhhHHHHHhc------CCCCCCcccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIV------GKKQICPYCKEKVD   41 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~------~~~~tCP~CR~~v~   41 (88)
                      ...+|.|=|.||-.|+.+|-..      -.--+||.|.+++-
T Consensus        64 dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF  105 (299)
T KOG3970|consen   64 DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF  105 (299)
T ss_pred             cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence            4578899999999999999742      12347999999873

>KOG4445|consensus

Probab=93.03  E-value=0.028  Score=44.91  Aligned_cols=41  Identities=20%  Similarity=0.509  Sum_probs=30.9

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHh------------------c---CCCCCCcccccccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCI------------------V---GKKQICPYCKEKVDLK   43 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~------------------~---~~~~tCP~CR~~v~~~   43 (88)
                      .++...+.+|-|.||..|+.+.|.                  .   .-+..||+||..+...
T Consensus       127 ~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e  188 (368)
T KOG4445|consen  127 SSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE  188 (368)
T ss_pred             CCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence            456678889999999999988771                  0   1134699999998543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=92.72  E-value=0.12  Score=38.97  Aligned_cols=48  Identities=19%  Similarity=0.281  Sum_probs=34.6

Q ss_pred             CCCCCceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc-cCCC
Q psy11807          1 MDNDIMTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV-NLWE   51 (88)
Q Consensus         1 m~~~e~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~-~p~~   51 (88)
                      |++..+.+-| +|||+|=+.+|++=   .+...||+|-+++...++.. ||-+
T Consensus       123 ~~~~~~fv~l~~cG~V~s~~alke~---k~~~~Cp~c~~~f~~~DiI~Lnp~~  172 (260)
T PF04641_consen  123 FNGKHKFVYLRPCGCVFSEKALKEL---KKSKKCPVCGKPFTEEDIIPLNPPE  172 (260)
T ss_pred             cCCceeEEEEcCCCCEeeHHHHHhh---cccccccccCCccccCCEEEecCCc
Confidence            3344455555 99999999999996   23567999999998666543 4433

>KOG1002|consensus

Probab=92.31  E-value=0.047  Score=46.68  Aligned_cols=39  Identities=18%  Similarity=0.480  Sum_probs=30.5

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhc---CCCCCCccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIV---GKKQICPYCKEKVDL   42 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~---~~~~tCP~CR~~v~~   42 (88)
                      .+......|.|.|...||.+....   +.+-+||.|-..+..
T Consensus       546 aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  546 AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            345566789999999999888742   556899999987643

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=92.05  E-value=0.18  Score=44.95  Aligned_cols=72  Identities=18%  Similarity=0.341  Sum_probs=47.2

Q ss_pred             cCcHhhHHHHHhcCCCCCCccccccccccccccc--CCCCCcc-hhhch----hhhhcccc---chhHHHHHHHHHhhhh
Q psy11807         15 IFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN--LWEKPHV-FYGQL----LDWLRWLV---AWQPVILALIQGVNYM   84 (88)
Q Consensus        15 ~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~--p~~~~~~-~~~~~----ld~~r~~~---~w~p~~~~~~~~~~~~   84 (88)
                      .-|++|+.+|+.-+++..|-+|..+.+.+++.++  |..-+.. +-+..    ....|-+.   .|-.....+.-+|.|+
T Consensus        40 YiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPfsiL~rk~a~t~~~~trvllT~~~w~VL~~v~~~~Vwn~  119 (1175)
T COG5183          40 YIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPFSILIRKVADTGWKATRVLLTIGLWCVLQMVKWMGVWNM  119 (1175)
T ss_pred             HHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3799999999988888999999999999888664  3221111 11111    11233332   3666666677778887


Q ss_pred             cc
Q psy11807         85 LD   86 (88)
Q Consensus        85 ~~   86 (88)
                      +|
T Consensus       120 ~G  121 (1175)
T COG5183         120 FG  121 (1175)
T ss_pred             hc
Confidence            77

>KOG1571|consensus

Probab=90.41  E-value=0.11  Score=41.81  Aligned_cols=37  Identities=19%  Similarity=0.397  Sum_probs=26.9

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ++..+..-+||||+=.  |..-=   .+..+||+||+.+...
T Consensus       313 ~e~~~~~fvpcGh~cc--ct~cs---~~l~~CPvCR~rI~~~  349 (355)
T KOG1571|consen  313 DEPKSAVFVPCGHVCC--CTLCS---KHLPQCPVCRQRIRLV  349 (355)
T ss_pred             CCccceeeecCCcEEE--chHHH---hhCCCCchhHHHHHHH
Confidence            3455678899999944  66655   3456799999988653

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=90.10  E-value=0.15  Score=29.08  Aligned_cols=26  Identities=23%  Similarity=0.636  Sum_probs=15.7

Q ss_pred             CCCCcCcHhhHHHHHhcCCCCCCccc
Q psy11807         11 YCIFIFHEFCIRGWCIVGKKQICPYC   36 (88)
Q Consensus        11 ~C~H~FH~~CI~~Wl~~~~~~tCP~C   36 (88)
                      .|+=.+|..|++..+...++..||.|
T Consensus        18 ~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen   18 DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            46667999999999864444479988

; PDB: 3NW0_A 2CT0_A.

>KOG2660|consensus

Probab=89.66  E-value=0.087  Score=42.00  Aligned_cols=32  Identities=25%  Similarity=0.574  Sum_probs=26.7

Q ss_pred             cCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807         10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus        10 L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      .-|=|.|...||.+-|..  ..+||+|...+.-.
T Consensus        32 ~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   32 TECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKT   63 (331)
T ss_pred             HHHHHHHHHHHHHHHHHH--hccCCccceeccCc
Confidence            358999999999999953  78999999887543

>KOG2879|consensus

Probab=88.95  E-value=0.25  Score=38.85  Aligned_cols=35  Identities=26%  Similarity=0.501  Sum_probs=28.5

Q ss_pred             ecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          9 KTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         9 ~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ..+|||+|.--||..=+.....-+||.|-+++.+-
T Consensus       255 ~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l  289 (298)
T KOG2879|consen  255 IGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL  289 (298)
T ss_pred             eccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence            34699999999999877545567999999998743

>KOG1952|consensus

Probab=88.93  E-value=0.18  Score=44.69  Aligned_cols=28  Identities=36%  Similarity=0.918  Sum_probs=21.4

Q ss_pred             CCCCcCcHhhHHHHHhcCCC-----CCCccccc
Q psy11807         11 YCIFIFHEFCIRGWCIVGKK-----QICPYCKE   38 (88)
Q Consensus        11 ~C~H~FH~~CI~~Wl~~~~~-----~tCP~CR~   38 (88)
                      .|=|+||..||++|-....+     =.||.|+.
T Consensus       212 sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  212 SCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             hhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            36799999999999864222     25999993

>KOG2932|consensus

Probab=88.62  E-value=0.19  Score=40.40  Aligned_cols=31  Identities=29%  Similarity=0.639  Sum_probs=24.8

Q ss_pred             eecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      +..+|.|+|..+|-+.=    ..+.||.|-.+|..
T Consensus       105 RmIPCkHvFCl~CAr~~----~dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen  105 RMIPCKHVFCLECARSD----SDKICPLCDDRVQR  135 (389)
T ss_pred             cccccchhhhhhhhhcC----ccccCcCcccHHHH
Confidence            45799999999998753    34689999998853

>KOG2034|consensus

Probab=88.46  E-value=0.21  Score=44.27  Aligned_cols=20  Identities=20%  Similarity=0.213  Sum_probs=16.7

Q ss_pred             ceeecCCCCcCcHhhHHHHH
Q psy11807          6 MTCKTYCIFIFHEFCIRGWC   25 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl   25 (88)
                      +-...+|||.||.+||.+=.
T Consensus       831 pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  831 PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cceeeeccchHHHHHHHHHH
Confidence            44567999999999998865

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.23  E-value=0.3  Score=39.35  Aligned_cols=29  Identities=24%  Similarity=0.544  Sum_probs=24.0

Q ss_pred             ecCCCCcCcHhhHHHHHhcCCCCCCccccc
Q psy11807          9 KTYCIFIFHEFCIRGWCIVGKKQICPYCKE   38 (88)
Q Consensus         9 ~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~   38 (88)
                      +-.|||.|.++||..=|. .....||.|-.
T Consensus       290 T~cC~~~fc~eci~~al~-dsDf~CpnC~r  318 (427)
T COG5222         290 TPCCGHTFCDECIGTALL-DSDFKCPNCSR  318 (427)
T ss_pred             CccccchHHHHHHhhhhh-hccccCCCccc
Confidence            346999999999999985 45678999965

>PHA03096 p28-like protein; Provisional

Probab=87.45  E-value=0.32  Score=37.79  Aligned_cols=30  Identities=23%  Similarity=0.279  Sum_probs=22.2

Q ss_pred             CCCCcCcHhhHHHHHhc-CCCCCCccccccc
Q psy11807         11 YCIFIFHEFCIRGWCIV-GKKQICPYCKEKV   40 (88)
Q Consensus        11 ~C~H~FH~~CI~~Wl~~-~~~~tCP~CR~~v   40 (88)
                      .|.|.|...||+.|-.. ..+.+||.||.--
T Consensus       203 ~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~  233 (284)
T PHA03096        203 EIKHEFNIFCIKIWMTESLYKETEPENRRLN  233 (284)
T ss_pred             cCCcHHHHHHHHHHHHhhhhcccCccccchh
Confidence            69999999999999742 1245677777543

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=86.92  E-value=0.35  Score=38.87  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=24.1

Q ss_pred             CCCCc-----CcHhhHHHHHhc-----------CCCCCCccccccccccc
Q psy11807         11 YCIFI-----FHEFCIRGWCIV-----------GKKQICPYCKEKVDLKL   44 (88)
Q Consensus        11 ~C~H~-----FH~~CI~~Wl~~-----------~~~~tCP~CR~~v~~~~   44 (88)
                      +|.-.     ...+|+-+|+..           +.+-+||+||++.-..+
T Consensus       305 ~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD  354 (358)
T PF10272_consen  305 PCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD  354 (358)
T ss_pred             CCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence            45555     467999999842           23569999999875443

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2817|consensus

Probab=86.87  E-value=0.58  Score=38.17  Aligned_cols=42  Identities=12%  Similarity=0.197  Sum_probs=31.5

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCC--CCCccccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKK--QICPYCKEKVDLKL   44 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~--~tCP~CR~~v~~~~   44 (88)
                      +.+.++..|.|||+--.+=|.+=-. +..  -.||+|=.+....+
T Consensus       345 sdeNPPm~L~CGHVISkdAlnrLS~-ng~~sfKCPYCP~e~~~~~  388 (394)
T KOG2817|consen  345 SDENPPMMLICGHVISKDALNRLSK-NGSQSFKCPYCPVEQLASD  388 (394)
T ss_pred             cCCCCCeeeeccceecHHHHHHHhh-CCCeeeeCCCCCcccCHHh
Confidence            3566789999999999999998643 222  46999987765543

>KOG1940|consensus

Probab=85.77  E-value=0.62  Score=36.30  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKE   38 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~   38 (88)
                      ..+.+..++|||.-|..|.++=.. +. -+||+|.+
T Consensus       171 s~~~~~~~~CgH~~h~~cf~e~~~-~~-y~CP~C~~  204 (276)
T KOG1940|consen  171 SFEDAGVLKCGHYMHSRCFEEMIC-EG-YTCPICSK  204 (276)
T ss_pred             ccccCCccCcccchHHHHHHHHhc-cC-CCCCcccc
Confidence            345677899999999999988864 33 89999999

>KOG1814|consensus

Probab=85.41  E-value=0.46  Score=39.21  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=27.9

Q ss_pred             CceeecCCCCcCcHhhHHHHHhc------CCCCCCcccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIV------GKKQICPYCKEK   39 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~------~~~~tCP~CR~~   39 (88)
                      +....|||+|+|...|++..+.+      .+.-.||-+.-+
T Consensus       198 ~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  198 HCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             ceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            67889999999999999999843      234578877644

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=84.91  E-value=0.38  Score=36.74  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=26.9

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV   40 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v   40 (88)
                      ..+...|||.|...|..+=+  .+-.+|-+|-+..
T Consensus       208 spvvt~CGH~FC~~Cai~~y--~kg~~C~~Cgk~t  240 (259)
T COG5152         208 SPVVTECGHSFCSLCAIRKY--QKGDECGVCGKAT  240 (259)
T ss_pred             chhhhhcchhHHHHHHHHHh--ccCCcceecchhh
Confidence            45567899999999998887  4567999998764

>KOG1001|consensus

Probab=84.85  E-value=0.34  Score=41.65  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=35.4

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV   47 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~   47 (88)
                      -+.....+|||.|..+|+..=+.......||.||..++.+.+.+
T Consensus       463 ~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s  506 (674)
T KOG1001|consen  463 LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS  506 (674)
T ss_pred             cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence            34566779999999999999886666667999999988776655

>KOG0309|consensus

Probab=84.51  E-value=0.6  Score=41.55  Aligned_cols=27  Identities=22%  Similarity=0.549  Sum_probs=21.9

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCcc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPY   35 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~   35 (88)
                      ..-+.|||+-|..|..+|+..  ...||.
T Consensus      1043 ~~Cg~C~Hv~H~sc~~eWf~~--gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRT--GDVCPS 1069 (1081)
T ss_pred             hhhccccccccHHHHHHHHhc--CCcCCC
Confidence            345689999999999999964  357885

>KOG3053|consensus

Probab=84.29  E-value=0.4  Score=37.59  Aligned_cols=28  Identities=25%  Similarity=0.606  Sum_probs=21.5

Q ss_pred             CcCcHhhHHHHHhcCC-------CCCCccccccccc
Q psy11807         14 FIFHEFCIRGWCIVGK-------KQICPYCKEKVDL   42 (88)
Q Consensus        14 H~FH~~CI~~Wl~~~~-------~~tCP~CR~~v~~   42 (88)
                      |--|..|+.+|.. +|       .-+||.|+.+...
T Consensus        49 KWVHqsCL~rWiD-EK~~~n~~q~V~C~QCqTEYii   83 (293)
T KOG3053|consen   49 KWVHQSCLSRWID-EKQRGNPLQTVSCPQCQTEYII   83 (293)
T ss_pred             HHHHHHHHHHHHh-HHhcCCCCceeechhhcchhee
Confidence            7789999999984 22       2379999988643

>KOG1829|consensus

Probab=83.96  E-value=0.3  Score=41.50  Aligned_cols=30  Identities=27%  Similarity=0.719  Sum_probs=22.2

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKV   40 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v   40 (88)
                      ..+-..||++||..|.++=     +.-||.|-..-
T Consensus       531 ~~rC~~C~avfH~~C~~r~-----s~~CPrC~R~q  560 (580)
T KOG1829|consen  531 TRRCSTCLAVFHKKCLRRK-----SPCCPRCERRQ  560 (580)
T ss_pred             ceeHHHHHHHHHHHHHhcc-----CCCCCchHHHH
Confidence            3455689999999998763     34499996543

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=83.80  E-value=0.5  Score=33.37  Aligned_cols=22  Identities=14%  Similarity=0.078  Sum_probs=18.1

Q ss_pred             CCceeecCCC------CcCcHhhHHHHH
Q psy11807          4 DIMTCKTYCI------FIFHEFCIRGWC   25 (88)
Q Consensus         4 ~e~~~~L~C~------H~FH~~CI~~Wl   25 (88)
                      ++.++.++||      |.||.+|+++|-
T Consensus        39 ~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   39 NDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            3567777887      889999999993

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=83.67  E-value=0.83  Score=37.53  Aligned_cols=38  Identities=13%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      ...+||+|.-...|-.+-=..-++..||.||.+.+.--
T Consensus        74 s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~  111 (493)
T COG5236          74 SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV  111 (493)
T ss_pred             EEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence            45789999999999876543345678999999886543

>KOG1609|consensus

Probab=82.50  E-value=0.69  Score=34.22  Aligned_cols=36  Identities=19%  Similarity=0.400  Sum_probs=28.1

Q ss_pred             eecCCC-----CcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          8 CKTYCI-----FIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         8 ~~L~C~-----H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ...||.     ...|..|++.|+....+.+|..|.......
T Consensus        96 l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   96 LISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             cccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            344654     557999999999766788999999876554

>KOG3113|consensus

Probab=81.74  E-value=1.2  Score=34.90  Aligned_cols=41  Identities=20%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             CCCCCceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          1 MDNDIMTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         1 m~~~e~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      |++--+...| +|||+|-+.=+++-    +..+|++|-+.++..+.
T Consensus       121 Mng~~~F~~l~~CGcV~SerAlKei----kas~C~~C~a~y~~~dv  162 (293)
T KOG3113|consen  121 MNGKYRFCALRCCGCVFSERALKEI----KASVCHVCGAAYQEDDV  162 (293)
T ss_pred             ecceEEEEEEeccceeccHHHHHHh----hhccccccCCcccccCe
Confidence            3444444445 89999999988885    45789999999876654

>KOG4275|consensus

Probab=80.93  E-value=0.44  Score=38.04  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=23.9

Q ss_pred             CCCCCceeecCCCCcC-cHhhHHHHHhcCCCCCCcccccccc
Q psy11807          1 MDNDIMTCKTYCIFIF-HEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         1 m~~~e~~~~L~C~H~F-H~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      |+.--...-|+|||.- .-+|-++      -+.||+||+.+.
T Consensus       307 mDaP~DCvfLeCGHmVtCt~CGkr------m~eCPICRqyi~  342 (350)
T KOG4275|consen  307 MDAPRDCVFLECGHMVTCTKCGKR------MNECPICRQYIV  342 (350)
T ss_pred             hcCCcceEEeecCcEEeehhhccc------cccCchHHHHHH
Confidence            4445566789999973 4455433      358999999763

>KOG3899|consensus

Probab=80.92  E-value=0.85  Score=36.62  Aligned_cols=33  Identities=18%  Similarity=0.471  Sum_probs=24.0

Q ss_pred             CCCcCcHhhHHHHHhc-----------CCCCCCccccccccccc
Q psy11807         12 CIFIFHEFCIRGWCIV-----------GKKQICPYCKEKVDLKL   44 (88)
Q Consensus        12 C~H~FH~~CI~~Wl~~-----------~~~~tCP~CR~~v~~~~   44 (88)
                      |.-....+|+.+|+.-           ..+-+||+||++.-..+
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d  368 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD  368 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence            4445678999999841           23579999999986654

>KOG1813|consensus

Probab=80.03  E-value=0.63  Score=36.94  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=27.6

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      +.+...|||.|.+.|-..=+  .+...|++|-+...
T Consensus       253 ~pVvt~c~h~fc~~ca~~~~--qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  253 RPVVTKCGHYFCEVCALKPY--QKGEKCYVCSQQTH  286 (313)
T ss_pred             cchhhcCCceeehhhhcccc--ccCCcceecccccc
Confidence            34567899999999998887  45578999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.5
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.48
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.44
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.4
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.4
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.4
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.39
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.38
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.37
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.35
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.34
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.33
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.3
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.28
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.24
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.24
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.24
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.22
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.21
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.2
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.2
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.18
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.18
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.17
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.17
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.17
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.17
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.16
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.15
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.14
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.14
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.12
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.03
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.0
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.98
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.95
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.95
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.93
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.93
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.92
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.84
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.76
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.76
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.73
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.7
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.66
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.65
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.65
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.63
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.62
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.61
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.57
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.57
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.48
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.44
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.42
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.37
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.32
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.23
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.21
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.02
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.01
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.92
3nw0_A	238	Non-structural maintenance of chromosomes element	97.83
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.58
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	83.32

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.50  E-value=1.4e-14  Score=88.28  Aligned_cols=50  Identities=20%  Similarity=0.369  Sum_probs=40.8

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccCCCCC
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNLWEKP   53 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p~~~~   53 (88)
                      +..+.+..++|||.||..||.+|+.  ++.+||+||+++...++..+|-..+
T Consensus        26 ~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~~~   75 (78)
T 2ect_A           26 ALGESVRQLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTGQNTATNPPGLT   75 (78)
T ss_dssp             CTTSCEEECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCCSCSCCCCSSCT
T ss_pred             cCCCCEEEeCCCCeecHHHHHHHHH--cCCcCcCcCCccCCcccCCCCCCCC
Confidence            3445678889999999999999994  4579999999999888777765443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-14  Score=90.44  Aligned_cols=41  Identities=20%  Similarity=0.531  Sum_probs=33.0

Q ss_pred             CCCceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          3 NDIMTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         3 ~~e~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      +++.++.+ +|||.||.+||++|+.  .+++||+||+++..+++
T Consensus        38 ~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~~~~~~~   79 (81)
T 2ecl_A           38 QEDCVVVWGECNHSFHNCCMSLWVK--QNNRCPLCQQDWVVQRI   79 (81)
T ss_dssp             TTTCCEEEETTSCEEEHHHHHHHTT--TCCBCTTTCCBCCEEEE
T ss_pred             CCceEEEeCCCCCccChHHHHHHHH--hCCCCCCcCCCcchhhc
Confidence            44555566 5999999999999984  46799999999887654

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.44  E-value=4.4e-14  Score=80.84  Aligned_cols=38  Identities=24%  Similarity=0.465  Sum_probs=31.8

Q ss_pred             CCCCceeecC-CCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          2 DNDIMTCKTY-CIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         2 ~~~e~~~~L~-C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      +.++.+..++ |||.||.+||.+|+.  ++.+||+||+++.
T Consensus        16 ~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~   54 (55)
T 1iym_A           16 EDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV   54 (55)
T ss_dssp             CTTSCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred             cCCCceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence            3456678887 999999999999984  5789999999864

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.40  E-value=1.1e-13  Score=87.56  Aligned_cols=39  Identities=23%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      +.++.++.++|||.||..||.+|+.  ++.+||+||+++..
T Consensus        51 ~~~~~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           51 VKGDVATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFPP   89 (91)
T ss_dssp             CTTCEEEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSSC
T ss_pred             cCCCcEEecCCCChHHHHHHHHHHH--cCCcCcCcCccCCC
Confidence            3456788899999999999999994  56799999998754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=4.7e-14  Score=85.68  Aligned_cols=40  Identities=20%  Similarity=0.549  Sum_probs=33.4

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      +.++.++.++|||.||.+||.+|+..  +.+||+||+++...
T Consensus        34 ~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           34 ESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGPS   73 (75)
T ss_dssp             CBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCCC
T ss_pred             CCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCCC
Confidence            34556788999999999999999963  57999999988654

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.40  E-value=9.5e-14  Score=82.78  Aligned_cols=40  Identities=23%  Similarity=0.776  Sum_probs=33.5

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      +.++.+..++|||.||..||.+|+..  +.+||+||+++...
T Consensus        25 ~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           25 EEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEAQ   64 (69)
T ss_dssp             CSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCSC
T ss_pred             cCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccCc
Confidence            34567888999999999999999963  56899999998654

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.39  E-value=1.2e-13  Score=82.30  Aligned_cols=42  Identities=26%  Similarity=0.528  Sum_probs=35.0

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      +++....++|||.||..||.+|+..  +.+||+||+++..+++.
T Consensus        26 ~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~   67 (71)
T 3ng2_A           26 NGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYH   67 (71)
T ss_dssp             TTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCCCSCC
T ss_pred             ccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccChhhee
Confidence            3456688999999999999999953  46999999999876654

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.38  E-value=1.8e-13  Score=90.29  Aligned_cols=37  Identities=24%  Similarity=0.580  Sum_probs=32.2

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      .+..++|||.||.+||.+||.  .+.+||+||+++..++
T Consensus        67 ~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~~~~  103 (106)
T 3dpl_R           67 TVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEFQK  103 (106)
T ss_dssp             CEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCCEEE
T ss_pred             eEeecccCcEECHHHHHHHHH--cCCcCcCCCCcceeec
Confidence            577889999999999999994  4789999999987654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.5e-13  Score=82.95  Aligned_cols=39  Identities=26%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ..+.+..++|||.||..||.+|+..  +.+||+||+++...
T Consensus        27 ~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           27 PRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQL   65 (74)
T ss_dssp             SSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSSC
T ss_pred             CCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCcccccc
Confidence            4566778899999999999999963  46999999998543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.35  E-value=2.7e-13  Score=78.90  Aligned_cols=41  Identities=24%  Similarity=0.510  Sum_probs=34.3

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      ++.+..++|||.||.+||.+|+..  +.+||+||+++..+++.
T Consensus        20 ~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~   60 (64)
T 2xeu_A           20 GRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYH   60 (64)
T ss_dssp             TCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTTCEE
T ss_pred             CCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCcccee
Confidence            345688899999999999999963  67999999998876653

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.34  E-value=5.4e-13  Score=76.04  Aligned_cols=36  Identities=17%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      ++.+..++|||.||.+||.+|+..  +.+||+||+++.
T Consensus        19 ~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~   54 (55)
T 2ecm_A           19 RVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS   54 (55)
T ss_dssp             TSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred             CcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence            456888999999999999999964  379999999864

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=4.6e-13  Score=78.91  Aligned_cols=37  Identities=24%  Similarity=0.559  Sum_probs=31.2

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ++.+..++|||.||..||.+|+..  +.+||+||+++..
T Consensus        32 ~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           32 GRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH   68 (69)
T ss_dssp             TCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred             cCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence            345588999999999999999953  6799999998764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.30  E-value=1.7e-12  Score=83.80  Aligned_cols=37  Identities=27%  Similarity=0.438  Sum_probs=30.7

Q ss_pred             eeecCCCCcCcHhhHHHHHhc---CCCCCCcccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIV---GKKQICPYCKEKVDLK   43 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~---~~~~tCP~CR~~v~~~   43 (88)
                      +..++|||.||.+||.+|+..   .++.+||+||+.+..+
T Consensus        56 ~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           56 GRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             EEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             eecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            447899999999999999953   2467999999998755

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.8e-12  Score=78.18  Aligned_cols=42  Identities=19%  Similarity=0.330  Sum_probs=34.8

Q ss_pred             ceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807          6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL   49 (88)
Q Consensus         6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p   49 (88)
                      ....+ +|||.||..||.+|+..  +.+||+||+++...++..++
T Consensus        27 ~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~~   69 (72)
T 2djb_A           27 DATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLSGP   69 (72)
T ss_dssp             SCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCCCC
T ss_pred             CcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcccccccC
Confidence            34555 99999999999999953  57999999999888776655

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.24  E-value=7.5e-13  Score=89.21  Aligned_cols=37  Identities=24%  Similarity=0.580  Sum_probs=0.0

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      .+..++|+|.||.+||.+||.  .+.+||+||+++..++
T Consensus        78 ~v~~~~C~H~FH~~CI~~Wl~--~~~~CP~Cr~~~~~~k  114 (117)
T 4a0k_B           78 TVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEFQK  114 (117)
T ss_dssp             ---------------------------------------
T ss_pred             ccccCCcCceEcHHHHHHHHH--cCCcCCCCCCeeeeec
Confidence            345569999999999999994  4789999999987654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=4.6e-12  Score=75.11  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      ....++|||.||..||.+|+. ..+.+||+||+++..+++
T Consensus        27 ~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           27 SPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             SCCCCSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred             CeeECCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence            345589999999999999995 456789999999887654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.1e-12  Score=77.74  Aligned_cols=40  Identities=15%  Similarity=0.491  Sum_probs=33.4

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      .....++|||.||..||.+|+.  ++.+||+||+.+..+.+.
T Consensus        26 ~~~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~   65 (71)
T 2d8t_A           26 VHPVSLPCKHVFCYLCVKGASW--LGKRCALCRQEIPEDFLD   65 (71)
T ss_dssp             SSEEEETTTEEEEHHHHHHCTT--CSSBCSSSCCBCCHHHHS
T ss_pred             CCCEEccCCCHHHHHHHHHHHH--CCCcCcCcCchhCHhhcc
Confidence            4567889999999999999984  457999999999876543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.22  E-value=1e-11  Score=73.34  Aligned_cols=40  Identities=18%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             eecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ..++|||.|+..||.+|+. .++.+||+||+++..+++..+
T Consensus        22 ~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A           22 MVNVCGHTLCESCVDLLFV-RGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             EECTTCCCEEHHHHHHHHH-TTSSSCTTTCCCCSSCCCEEE
T ss_pred             ecCCCCCHhHHHHHHHHHH-cCCCcCCCCCCccccccceee
Confidence            5689999999999999985 346789999999987776554

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.21  E-value=1.2e-11  Score=80.22  Aligned_cols=42  Identities=24%  Similarity=0.508  Sum_probs=35.1

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV   47 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~   47 (88)
                      ++.++.++|||.||..||.+|+.  ++.+||+||+++..+++..
T Consensus        24 ~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~~   65 (133)
T 4ap4_A           24 GRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKRYHP   65 (133)
T ss_dssp             TCCEEEETTCCEEEHHHHHHHHT--TCSBCTTTCCBCTTTCEEE
T ss_pred             ccCeEecCCCChhhHHHHHHHHH--hCCCCCCCCCcCccccccc
Confidence            45568899999999999999994  4579999999998776544

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.20  E-value=3.1e-12  Score=75.79  Aligned_cols=35  Identities=29%  Similarity=0.704  Sum_probs=30.3

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ....++|||.||..||.+|+.  ++.+||+||+++..
T Consensus        18 ~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~   52 (68)
T 1chc_A           18 YSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVES   52 (68)
T ss_dssp             CEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCCC
T ss_pred             CcEecCCCCeeHHHHHHHHHh--CcCcCcCCChhhHh
Confidence            358899999999999999995  35799999999864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.20  E-value=9.3e-12  Score=79.75  Aligned_cols=43  Identities=21%  Similarity=0.423  Sum_probs=35.0

Q ss_pred             ceee-cCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807          6 MTCK-TYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL   49 (88)
Q Consensus         6 ~~~~-L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p   49 (88)
                      ..+. ++|||.||..||.+|+... +.+||+||+++...++..+.
T Consensus        34 ~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~l~~~~   77 (100)
T 3lrq_A           34 DARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQLRELVNCR   77 (100)
T ss_dssp             SEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCEECT
T ss_pred             CccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCHHHhHhhH
Confidence            4556 9999999999999999643 36999999999877766553

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.4e-11  Score=75.71  Aligned_cols=39  Identities=13%  Similarity=0.339  Sum_probs=32.5

Q ss_pred             eeecCCCCcCcHhhHHHHHhcC-CCCCCcccccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVG-KKQICPYCKEKVDLKLM   45 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~-~~~tCP~CR~~v~~~~~   45 (88)
                      .+.++|||.||..||.+|+..+ ...+||+||+.+...++
T Consensus        32 ~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i   71 (88)
T 2ct2_A           32 PKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL   71 (88)
T ss_dssp             EEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred             eEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence            7889999999999999999642 24799999999876543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=3e-12  Score=76.40  Aligned_cols=35  Identities=23%  Similarity=0.540  Sum_probs=30.7

Q ss_pred             eecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          8 CKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         8 ~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      ..++|||.||..||.+|+.  ++.+||+||+++...+
T Consensus        28 ~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           28 LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCCC
T ss_pred             cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCCC
Confidence            7889999999999999984  6789999999987544

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1e-11  Score=74.20  Aligned_cols=41  Identities=22%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             CceeecCCCCcCcHhhHHHHHhc-CCCCCCcccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIV-GKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~CR~~v~~~~~   45 (88)
                      .....++|||.||..||.+|+.. +.+.+||+||+++..+++
T Consensus        31 ~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           31 QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            45677899999999999999842 245699999999876653

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.17  E-value=3e-11  Score=73.25  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=35.9

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcC----CCCCCccccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVG----KKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~----~~~tCP~CR~~v~~~~~~~~   48 (88)
                      .....++|||.||..||.+|+...    ....||+||+++...++..|
T Consensus        30 ~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n   77 (85)
T 2ecw_A           30 KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN   77 (85)
T ss_dssp             SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred             CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence            345678999999999999999652    26799999999988766555

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.17  E-value=1.6e-11  Score=74.53  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=35.0

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ...+.++|||.|+..||.+|+. ..+.+||+||+++...++..|
T Consensus        19 ~~Pv~~~CgH~fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n   61 (78)
T 1t1h_A           19 KDPVIVSTGQTYERSSIQKWLD-AGHKTCPKSQETLLHAGLTPN   61 (78)
T ss_dssp             SSEEEETTTEEEEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEEC
T ss_pred             cCCEEcCCCCeecHHHHHHHHH-HCcCCCCCCcCCCChhhCccC
Confidence            3467789999999999999995 336899999999887665544

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.17  E-value=1.1e-11  Score=83.17  Aligned_cols=37  Identities=30%  Similarity=0.786  Sum_probs=31.6

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ..++.++|||.||..||.+|+  .++.+||+||+++...
T Consensus        64 ~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           64 IEAVTLNCAHSFCSYCINEWM--KRKIECPICRKDIKSK  100 (138)
T ss_dssp             SSEEEETTSCEEEHHHHHHHT--TTCSBCTTTCCBCCCE
T ss_pred             CCceECCCCCCccHHHHHHHH--HcCCcCCCCCCcCCCC
Confidence            456789999999999999998  4578999999998654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=77.62  Aligned_cols=38  Identities=21%  Similarity=0.523  Sum_probs=31.7

Q ss_pred             eecCCC-----CcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          8 CKTYCI-----FIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         8 ~~L~C~-----H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      ..+||+     |.||.+||++|+..+.+.+||+||+++..+..
T Consensus        31 l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~   73 (80)
T 2d8s_A           31 LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK   73 (80)
T ss_dssp             EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred             eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence            468996     99999999999975545699999999877653

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=3.2e-11  Score=73.12  Aligned_cols=44  Identities=16%  Similarity=0.252  Sum_probs=35.6

Q ss_pred             CceeecCCCCcCcHhhHHHHHhc----CCCCCCccccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIV----GKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~----~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      .....++|||.||..||.+|+..    ....+||+||+.+...++..|
T Consensus        30 ~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n   77 (85)
T 2ecv_A           30 TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN   77 (85)
T ss_dssp             SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred             CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence            34567899999999999999964    236799999999988766554

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.15  E-value=2.5e-11  Score=73.69  Aligned_cols=38  Identities=18%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CceeecC-CCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          5 IMTCKTY-CIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         5 e~~~~L~-C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ...+.++ |||.||..||.+|+......+||+||+++..
T Consensus        26 ~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           26 TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            4456788 9999999999999965444699999997543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.14  E-value=3.3e-11  Score=76.35  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=32.4

Q ss_pred             ceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807          6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV   47 (88)
Q Consensus         6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~   47 (88)
                      ....+ +|||.||..||.+|+.  .+.+||+||+.+...++..
T Consensus        34 ~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~~   74 (99)
T 2y43_A           34 IAMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTEPDLKN   74 (99)
T ss_dssp             SEEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCEE
T ss_pred             CcCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCChhhCCc
Confidence            34555 9999999999999994  4679999999988765543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.14  E-value=1.1e-11  Score=74.91  Aligned_cols=43  Identities=19%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcC-----CCCCCccccccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVG-----KKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~-----~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ....++|||.|+..||.+|+...     ...+||+||+++...++..|
T Consensus        24 ~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n   71 (79)
T 2egp_A           24 EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN   71 (79)
T ss_dssp             SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred             CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence            35668999999999999998531     26799999999988776655

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.12  E-value=1.2e-11  Score=80.10  Aligned_cols=40  Identities=25%  Similarity=0.522  Sum_probs=33.7

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      .....++|||.||..||++|+..  +.+||+||+++..+++.
T Consensus        90 ~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~  129 (133)
T 4ap4_A           90 RLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYH  129 (133)
T ss_dssp             CCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGGGEE
T ss_pred             cceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChhcce
Confidence            34578899999999999999963  56999999999877654

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.07  E-value=8.5e-11  Score=77.22  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=31.6

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ...+.++|||.||..||.+|+. .+..+||+||+++..
T Consensus        63 ~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           63 FRPITTVCQHNVCKDCLDRSFR-AQVFSCPACRYDLGR   99 (124)
T ss_dssp             SSEEECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred             cCcEEeeCCCcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence            3567789999999999999996 445699999999876

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=5.1e-11  Score=73.00  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=29.5

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      ....++|||.||..||.+|+.  ++.+||+||+++.
T Consensus        27 ~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~   60 (81)
T 2csy_A           27 NPVVTKCRHYFCESCALEHFR--ATPRCYICDQPTG   60 (81)
T ss_dssp             SEEECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCC
T ss_pred             CeeEccCCCHhHHHHHHHHHH--CCCcCCCcCcccc
Confidence            456789999999999999995  3678999999986

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.06  E-value=9.5e-11  Score=73.02  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             ceeecC-CCCcCcHhhHHHHHhcCCCCCCccccccc
Q psy11807          6 MTCKTY-CIFIFHEFCIRGWCIVGKKQICPYCKEKV   40 (88)
Q Consensus         6 ~~~~L~-C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v   40 (88)
                      ..+.++ |||.|+..||.+|+..+.+.+||+||+++
T Consensus        25 ~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           25 DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            456788 99999999999999655557999999986

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=6.9e-11  Score=74.12  Aligned_cols=34  Identities=18%  Similarity=0.444  Sum_probs=29.0

Q ss_pred             CCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807         11 YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus        11 ~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      .|+|.||.+||.+||+...+.+||+||+++..+.
T Consensus        33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~   66 (74)
T 2ct0_A           33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI   66 (74)
T ss_dssp             SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred             CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence            8999999999999996544589999999987543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.03  E-value=1.4e-10  Score=74.08  Aligned_cols=43  Identities=23%  Similarity=0.464  Sum_probs=34.1

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcC-CCCCCccccccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVG-KKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~-~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ....++|||.||..||.+|+..+ ...+||+||+++...++..+
T Consensus        33 ~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~   76 (112)
T 1jm7_A           33 EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES   76 (112)
T ss_dssp             SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred             CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence            45668999999999999999632 22489999999987766554

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.00  E-value=2.4e-10  Score=73.49  Aligned_cols=36  Identities=22%  Similarity=0.521  Sum_probs=30.1

Q ss_pred             ceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ....+ +|||.||..||.+|+.  .+.+||+||+.+...
T Consensus        27 ~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           27 DATTIIECLHSFCKTCIVRYLE--TSKYCPICDVQVHKT   63 (108)
T ss_dssp             SEEEETTTCCEEEHHHHHHHHT--SCSBCTTTCCBSCSS
T ss_pred             CcCEeCCCCChhhHHHHHHHHH--hCCcCcCCCcccccc
Confidence            34555 9999999999999994  458999999998764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.98  E-value=2.9e-10  Score=73.72  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=33.7

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      .....++|||.|+..||.+|+.. .+.+||+||+++...++.
T Consensus        34 ~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~   74 (116)
T 1rmd_A           34 ADPVETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFPTDLE   74 (116)
T ss_dssp             SSEEECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGCB
T ss_pred             cCcEEcCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHhhcc
Confidence            34567899999999999999964 356899999998876654

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.95  E-value=2.7e-10  Score=74.49  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV   47 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~   47 (88)
                      ...+.++|||.|+..||.+|+.. ++.+||+||+++...++..
T Consensus        29 ~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~   70 (118)
T 3hct_A           29 REAVQTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFP   70 (118)
T ss_dssp             SSEEECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEE
T ss_pred             cCeEECCcCChhhHHHHHHHHhh-CCCCCCCCCCCcCHHhccc
Confidence            34577899999999999999963 2348999999998765543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=4.3e-10  Score=64.24  Aligned_cols=32  Identities=25%  Similarity=0.500  Sum_probs=26.2

Q ss_pred             CceeecCCCCcCcHhhHHHHHhc-CCCCCCccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIV-GKKQICPYC   36 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~C   36 (88)
                      .....++|||.||..||.+|+.. .++.+||+|
T Consensus        26 ~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           26 KEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             CccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34567899999999999999752 467899998

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=6.1e-10  Score=65.11  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=26.5

Q ss_pred             CceeecCCCCcCcHhhHHHHHhc-CCCCCCccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIV-GKKQICPYC   36 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~-~~~~tCP~C   36 (88)
                      .+.+.++|||.||..||.+|+.. +.+.+||+|
T Consensus        31 ~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           31 QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            45677899999999999999963 246689998

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.93  E-value=6.9e-10  Score=76.17  Aligned_cols=38  Identities=16%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      .....++|||.|+..||.+|+. ....+||+||+++...
T Consensus        89 ~~pv~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           89 YQPVTTECFHNVCKDCLQRSFK-AQVFSCPACRHDLGQN  126 (150)
T ss_dssp             SSEEECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCTT
T ss_pred             cCCEEcCCCCchhHHHHHHHHH-hCCCcCCCCCccCCCC
Confidence            3466799999999999999996 3445899999998776

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.92  E-value=6.6e-10  Score=76.06  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=29.2

Q ss_pred             eeec-CCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          7 TCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         7 ~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ...+ +|||.||..||.+|+. ..+.+||+||+++..
T Consensus        67 p~~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           67 TMTTKECLHRFCADCIITALR-SGNKECPTCRKKLVS  102 (165)
T ss_dssp             EEEETTTCCEEEHHHHHHHHH-TTCCBCTTTCCBCCS
T ss_pred             cCEeCCCCChhHHHHHHHHHH-hCcCCCCCCCCcCCC
Confidence            4444 9999999999999996 346789999999854

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.84  E-value=4.2e-10  Score=72.87  Aligned_cols=37  Identities=16%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ...+.++|||.|+..||.+|+. ..+.+||.||+.+..
T Consensus        26 ~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           26 VEPVTLPCNHTLCKPCFQSTVE-KASLCCPFCRRRVSS   62 (115)
T ss_dssp             SSCEECTTSCEECHHHHCCCCC-TTTSBCTTTCCBCHH
T ss_pred             CceeEcCCCCHHhHHHHHHHHh-HCcCCCCCCCcccCc
Confidence            3467789999999999999984 336799999999865

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.76  E-value=2.8e-09  Score=83.93  Aligned_cols=43  Identities=21%  Similarity=0.451  Sum_probs=35.3

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      +.-..+..++|||.||..||.+|+. +++.+||+||+++.....
T Consensus       340 e~~~~pv~lpCGH~FC~~Ci~~wl~-~~~~~CP~CR~~i~~~~~  382 (389)
T 2y1n_A          340 ENDKDVKIEPCGHLMCTSCLTSWQE-SEGQGCPFCRCEIKGTEP  382 (389)
T ss_dssp             SSBCCEEEETTCCEECHHHHHHHHH-HTCSBCTTTCCBCCEEEE
T ss_pred             cCCCCeEEeCCCChhhHHHHHHHHh-cCCCCCCCCCCccCCcee
Confidence            3445678899999999999999995 256799999999877644

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.76  E-value=2e-09  Score=70.27  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=30.4

Q ss_pred             ceeec-CCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      ..+.+ +|||.|+..||.+|+.    .+||+||+++...++.
T Consensus        34 ~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~   71 (117)
T 1jm7_B           34 EPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLK   71 (117)
T ss_dssp             SCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCC
T ss_pred             CccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCcccccc
Confidence            45667 9999999999999973    6899999998655443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.73  E-value=1.8e-09  Score=62.71  Aligned_cols=34  Identities=18%  Similarity=0.348  Sum_probs=28.6

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ...+.|+|||.|+..||.+|     +.+||+||+++...
T Consensus        17 ~~p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~~   50 (56)
T 1bor_A           17 KCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPLG   50 (56)
T ss_dssp             BCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSCC
T ss_pred             CCeEEcCCCCcccHHHHccC-----CCCCCcCCcEeecC
Confidence            45678999999999999885     45899999998764

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.70  E-value=5.6e-09  Score=65.47  Aligned_cols=42  Identities=5%  Similarity=-0.008  Sum_probs=35.0

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ...+.++|||+|-..||.+|+.  .+.+||.||+++...++..|
T Consensus        25 ~dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~l~pn   66 (85)
T 2kr4_A           25 TDPVRLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESMLEPV   66 (85)
T ss_dssp             SSEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGGCEEC
T ss_pred             cCCeECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHhcchH
Confidence            3567889999999999999996  36799999999887766554

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.66  E-value=8e-09  Score=62.95  Aligned_cols=36  Identities=22%  Similarity=0.472  Sum_probs=30.0

Q ss_pred             CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      +.......++|||. |+..|+.+|      .+||+||+++...
T Consensus        32 ~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           32 DRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK   68 (74)
T ss_dssp             SSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred             CCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccCc
Confidence            44456778899999 999999999      5799999988643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.66  E-value=9.2e-09  Score=66.61  Aligned_cols=41  Identities=7%  Similarity=0.016  Sum_probs=34.6

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ..+.++|||+|-..||.+|+.  .+.+||.||+++...++..|
T Consensus        41 dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~pn   81 (100)
T 2kre_A           41 DPVRLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTESMLEPV   81 (100)
T ss_dssp             SEEEETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEEC
T ss_pred             CCeECCCCCEEchHHHHHHHH--cCCCCCCCCCCCChhhceEC
Confidence            567889999999999999984  46899999999887666554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.65  E-value=1.1e-08  Score=73.08  Aligned_cols=43  Identities=12%  Similarity=0.058  Sum_probs=34.9

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ..++.++|||+|...||.+|+..+ ..+||+||+++...++..|
T Consensus       219 ~dPv~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~~~l~~n  261 (281)
T 2c2l_A          219 REPCITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQEQLIPN  261 (281)
T ss_dssp             SSEEECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCGGGCEEC
T ss_pred             cCCeECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCchhcCccc
Confidence            356788999999999999999643 3469999999987766554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.65  E-value=1.1e-08  Score=70.12  Aligned_cols=41  Identities=22%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFV   47 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~   47 (88)
                      ..++++|||.|...||.+|+.. ++.+||+||+++...++..
T Consensus        30 ~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~   70 (170)
T 3hcs_A           30 EAVQTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQLFP   70 (170)
T ss_dssp             SEEECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGCEE
T ss_pred             CcEECCCCCHHHHHHHHHHHHh-CCCCCCCCccCcchhhhhh
Confidence            4567899999999999999963 3359999999987765443

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.63  E-value=4.6e-09  Score=71.50  Aligned_cols=36  Identities=17%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ...+++|||.|+..||.+|+. .++.+||+||+++..
T Consensus        43 ~pv~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           43 RPFQAQCGHRYCSFCLASILS-SGPQNCAACVHEGIY   78 (141)
T ss_dssp             SEEECTTSCEEEHHHHHHHGG-GSCEECHHHHHTTCC
T ss_pred             CcEECCCCCccCHHHHHHHHh-cCCCCCCCCCCcccc
Confidence            456789999999999999985 344589999998644

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.62  E-value=1.5e-08  Score=60.67  Aligned_cols=34  Identities=18%  Similarity=0.447  Sum_probs=28.2

Q ss_pred             ecCCC--C---cCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          9 KTYCI--F---IFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         9 ~L~C~--H---~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      .+||.  |   .||.+||.+|+..+++.+||+||.++..
T Consensus        21 ~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A           21 FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            57865  4   8999999999976567899999998764

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.61  E-value=2e-08  Score=64.80  Aligned_cols=42  Identities=10%  Similarity=0.048  Sum_probs=34.9

Q ss_pred             CceeecCCC-CcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          5 IMTCKTYCI-FIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~-H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ...+.++|| |.|-..||.+|+.  .+.+||+||+++...++..|
T Consensus        33 ~dPV~~~cG~htf~r~cI~~~l~--~~~~cP~~~~~l~~~~L~pn   75 (98)
T 1wgm_A           33 CDPVVLPSSRVTVDRSTIARHLL--SDQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             SSEEECTTTCCEEEHHHHHHHTT--TSCBCTTTCSBCCTTTSEEC
T ss_pred             cCCeECCCCCeEECHHHHHHHHH--hCCCCCCCCCCCChhhceEc
Confidence            356778999 9999999999984  46799999999887666554

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.57  E-value=4.6e-08  Score=60.91  Aligned_cols=35  Identities=17%  Similarity=0.459  Sum_probs=28.8

Q ss_pred             cCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807         10 TYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus        10 L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      ++|||.|+..|+.++.. .....||.||+++..+.+
T Consensus        31 ~~CGH~fC~~Cl~~~~~-~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A           31 CTCGYQICRFCWHRIRT-DENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             STTSCCCCHHHHHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred             cCCCCCcCHHHHHHHHh-cCCCCCCCCCCccCCCch
Confidence            34999999999999974 346799999999876654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.57  E-value=1.9e-08  Score=60.02  Aligned_cols=39  Identities=13%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             CCCCceeec--CCCCc-CcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          2 DNDIMTCKT--YCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         2 ~~~e~~~~L--~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ++......+  ||||. |-.+|+.+|..  .+..||+||+++..
T Consensus        16 ~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~   57 (64)
T 2vje_A           16 GRPKNGCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQM   57 (64)
T ss_dssp             SSCSCEEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCCE
T ss_pred             CCCCCEEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchhc
Confidence            444455555  99999 78999999985  35689999999853

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.48  E-value=3.8e-08  Score=58.53  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=28.2

Q ss_pred             ceeec--CCCCc-CcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          6 MTCKT--YCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         6 ~~~~L--~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      ....+  ||||. |...|+.+|..  ++.+||+||+++..
T Consensus        19 ~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~   56 (63)
T 2vje_B           19 DGNIIHGRTGHLVTCFHCARRLKK--AGASCPICKKEIQL   56 (63)
T ss_dssp             CEEEEETTEEEEEECHHHHHHHHH--TTCBCTTTCCBCCE
T ss_pred             CeEEEecCCCCHhHHHHHHHHHHH--hCCcCCCcCchhhc
Confidence            34445  99998 99999999985  34689999999853

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.44  E-value=2.2e-08  Score=78.87  Aligned_cols=35  Identities=26%  Similarity=0.719  Sum_probs=27.6

Q ss_pred             ecCCCCcCcHhhHHHHHhcCC---------CCCCcccccccccc
Q psy11807          9 KTYCIFIFHEFCIRGWCIVGK---------KQICPYCKEKVDLK   43 (88)
Q Consensus         9 ~L~C~H~FH~~CI~~Wl~~~~---------~~tCP~CR~~v~~~   43 (88)
                      ..+|||.||..||.+||....         .++||+||+++..+
T Consensus       331 n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          331 NAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             CTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             CCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            358999999999999996311         25799999987643

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.3e-07  Score=60.02  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             ceeecC-CCCcCcHhhHHHHHhcC----CCCCCcc--cccc-ccccccccc
Q psy11807          6 MTCKTY-CIFIFHEFCIRGWCIVG----KKQICPY--CKEK-VDLKLMFVN   48 (88)
Q Consensus         6 ~~~~L~-C~H~FH~~CI~~Wl~~~----~~~tCP~--CR~~-v~~~~~~~~   48 (88)
                      ..+.++ |||+|-..||.+|+..+    +..+||+  |++. +...++..|
T Consensus        19 dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn   69 (94)
T 2yu4_A           19 KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD   69 (94)
T ss_dssp             SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred             CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence            466775 99999999999999642    2469999  9987 776666554

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=1.9e-07  Score=56.67  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=28.4

Q ss_pred             CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      +.......++|||. |...|+.+.      ..||+||+++..
T Consensus        33 ~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~   68 (75)
T 2ecg_A           33 DRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF   68 (75)
T ss_dssp             SSCCCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred             CCCCCEEEecCCCHHHHHHHhhCC------CCCccCCceecC
Confidence            44556778899999 999999643      579999998865

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.32  E-value=3.4e-07  Score=65.36  Aligned_cols=42  Identities=12%  Similarity=0.062  Sum_probs=34.4

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      .++.++|||+|-..||.+|+..+. .+||.||+++...++..|
T Consensus       118 DPV~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~~~L~pN  159 (179)
T 2f42_A          118 EPCITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQDQLIPN  159 (179)
T ss_dssp             SEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCEEC
T ss_pred             CCeECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCChhhCcch
Confidence            467789999999999999996432 379999999887766555

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.23  E-value=5.2e-07  Score=55.88  Aligned_cols=36  Identities=25%  Similarity=0.502  Sum_probs=30.0

Q ss_pred             CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      +....+..+||||. |-..|+.+|      ..||+||+++...
T Consensus        26 ~~~~~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~   62 (79)
T 2yho_A           26 EEEINSTFCPCGHTVCCESCAAQL------QSCPVCRSRVEHV   62 (79)
T ss_dssp             SSBCCEEEETTCBCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred             cccCcEEEECCCCHHHHHHHHHhc------CcCCCCCchhhCe
Confidence            45566788999999 999999987      2799999998654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=6.4e-07  Score=54.11  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=29.2

Q ss_pred             CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ++...+..+||||. |...|+..      ..+||+||+++...
T Consensus        23 ~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           23 NGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQES   59 (68)
T ss_dssp             SSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred             cCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhce
Confidence            45556788999999 99999984      25799999998653

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.05  E-value=1.3e-06  Score=52.02  Aligned_cols=42  Identities=10%  Similarity=0.087  Sum_probs=34.7

Q ss_pred             ceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807          6 MTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL   49 (88)
Q Consensus         6 ~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p   49 (88)
                      ..+.+ +|||+|=..||.+|+.  ++.+||+.++++..+++..+.
T Consensus        15 dPV~~~~sG~~yer~~I~~~l~--~~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A           15 RPVLSPKSRTIFEKSLLEQYVK--DTGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             SEEEETTTTEEEEHHHHHHHHH--HHSBCTTTCCBCCGGGCEECC
T ss_pred             CCEEeCCCCcEEcHHHHHHHHH--hCCCCcCCcCCCChhhcEECc
Confidence            34555 9999999999999995  356899999999888876654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.02  E-value=1.5e-06  Score=65.71  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=34.1

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcc--ccccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPY--CKEKVDLKLMFVN   48 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~--CR~~v~~~~~~~~   48 (88)
                      ++....|||.|-..||.+|+..+...+||+  ||+.+...++..|
T Consensus       194 PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN  238 (267)
T 3htk_C          194 PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD  238 (267)
T ss_dssp             EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred             CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence            444469999999999999985434468999  9999887776554

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.01  E-value=3.4e-06  Score=56.00  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=31.2

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      ..+.+||+|+|..+|+..|.+ .+.++||.||++|..-
T Consensus        14 ygRmIPCkHvFCydCa~~~~~-~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A           14 YGRMIPCKHVFCYDCAILHEK-KGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             EEEEETTCCEEEHHHHHHHHH-TTCCBCTTTCCBCSEE
T ss_pred             EeeeccccccHHHHHHHHHHh-ccCCCCcCcCCeeeee
Confidence            457789999999999999975 4567999999998543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.92  E-value=1.9e-06  Score=66.41  Aligned_cols=36  Identities=17%  Similarity=0.437  Sum_probs=29.8

Q ss_pred             CCCCceeecCCCCc-CcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807          2 DNDIMTCKTYCIFI-FHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus         2 ~~~e~~~~L~C~H~-FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      +.-..+..+||||. |+..|+.+|      ..||+||+++...
T Consensus       303 ~~~~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~~  339 (345)
T 3t6p_A          303 DKEVSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKGT  339 (345)
T ss_dssp             SSBCCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred             CcCCceEEcCCCChhHhHHHHhcC------CcCCCCCCCccCe
Confidence            34456788899999 999999998      4799999998643

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.83  E-value=6e-06  Score=60.70  Aligned_cols=33  Identities=18%  Similarity=0.429  Sum_probs=27.8

Q ss_pred             CCCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807         11 YCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus        11 ~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      .|+|.||.+|+.+|++...+..||.|++.+...
T Consensus       198 ~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          198 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            399999999999998654456999999988655

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.58  E-value=8.4e-06  Score=50.97  Aligned_cols=36  Identities=22%  Similarity=0.661  Sum_probs=27.8

Q ss_pred             cCCCCcCcHhhHHHHHhc----C--CCCCCcc--cccc--cccccc
Q psy11807         10 TYCIFIFHEFCIRGWCIV----G--KKQICPY--CKEK--VDLKLM   45 (88)
Q Consensus        10 L~C~H~FH~~CI~~Wl~~----~--~~~tCP~--CR~~--v~~~~~   45 (88)
                      .+|||.|..+|+.+++..    +  ...+||.  ||+.  +....+
T Consensus        24 ~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i   69 (94)
T 1wim_A           24 AQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI   69 (94)
T ss_dssp             TTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred             CCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence            379999999999999853    1  2358999  9998  665443

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=83.32  E-value=0.49  Score=28.20  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=23.3

Q ss_pred             cCCCCcCcHhhHHHHHhc--CCCCCCccccccc
Q psy11807         10 TYCIFIFHEFCIRGWCIV--GKKQICPYCKEKV   40 (88)
Q Consensus        10 L~C~H~FH~~CI~~Wl~~--~~~~tCP~CR~~v   40 (88)
                      -.|...||..|+...|..  ...=.||.|+...
T Consensus        28 d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           28 THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            368899999999988743  2234899998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.51
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.51
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.38
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.36
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.35
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.34
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.15
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.13
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.12
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.1
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.05
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.91
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.88
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.81
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.35
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.69

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.51  E-value=2.3e-15  Score=87.95  Aligned_cols=38  Identities=26%  Similarity=0.573  Sum_probs=31.9

Q ss_pred             CCCCceeec-CCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          2 DNDIMTCKT-YCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         2 ~~~e~~~~L-~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      +.++.+.++ +|||.||.+||.+|+  +++++||+||+++-
T Consensus        16 ~~~~~~~~l~~C~H~Fh~~Ci~~Wl--~~~~~CP~CR~~i~   54 (55)
T d1iyma_          16 EDGEEARFLPRCGHGFHAECVDMWL--GSHSTCPLCRLTVV   54 (55)
T ss_dssp             CTTSCCEECSSSCCEECTTHHHHTT--TTCCSCSSSCCCSC
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHH--HhCCcCCCCCCEeE
Confidence            456777777 599999999999998  45789999999863

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3e-15  Score=93.75  Aligned_cols=38  Identities=24%  Similarity=0.555  Sum_probs=32.6

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      ..+..++|||.||.+||.+||+  .+++||+||+++..+.
T Consensus        50 ~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~~~~~~   87 (88)
T d3dplr1          50 CTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEFQK   87 (88)
T ss_dssp             CCEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCCEEE
T ss_pred             CCeEEccccCcccHHHHHHHHH--HCCcCCCCCCcccccc
Confidence            3567889999999999999994  5689999999987654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5e-14  Score=86.90  Aligned_cols=42  Identities=21%  Similarity=0.481  Sum_probs=35.1

Q ss_pred             CCCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          2 DNDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         2 ~~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      +..++.+.++|||.||.+||.+|+. +++++||+||+++...+
T Consensus        31 ~~~~~~~~~~CgH~fC~~Ci~~wl~-~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          31 ENDKDVKIEPCGHLMCTSCLTSWQE-SEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             SSBCCEECSSSCCEECHHHHHHHHH-TTCCSCTTTCCCCCCCC
T ss_pred             CcCCCeEEeCCCCeeeHHHHHHHHH-HCcCcCCCCCcCccCCc
Confidence            4556788899999999999999996 45678999999997643

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.6e-13  Score=88.18  Aligned_cols=50  Identities=28%  Similarity=0.465  Sum_probs=36.7

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcC---CCCCCcccccccccccccccCCCCCcc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVG---KKQICPYCKEKVDLKLMFVNLWEKPHV   55 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~---~~~tCP~CR~~v~~~~~~~~p~~~~~~   55 (88)
                      ..+..++|||.||.+||.+||...   .+.+||+||+.+..+. ...|..+.++
T Consensus        54 ~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~-~~qP~~~~~~  106 (114)
T d1v87a_          54 VVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT-GTQPWGKMEV  106 (114)
T ss_dssp             CCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS-SSCTTSSCCC
T ss_pred             cceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCc-CCCCCCceee
Confidence            446778999999999999999642   2358999999886654 3346555443

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.2e-13  Score=80.41  Aligned_cols=40  Identities=15%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLM   45 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~   45 (88)
                      .....++|||.||.+||.+|+. ..+.+||+||+++..++.
T Consensus        19 ~~~~~~~C~H~fc~~Ci~~~~~-~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_          19 LKLMVNVCGHTLCESCVDLLFV-RGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CCEEECTTCCCEEHHHHHHHHH-TTSSSCTTTCCCCSSCCC
T ss_pred             eEEEeCccChHhhHHHHHHHhC-cCcCCCCCCCcCcccccc
Confidence            3456679999999999999995 345689999999866553

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-13  Score=79.25  Aligned_cols=36  Identities=17%  Similarity=0.416  Sum_probs=29.5

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDL   42 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~   42 (88)
                      .+..++|||.||.+||++|+. ..+.+||+||++++.
T Consensus        16 ~~~~~~CgH~~c~~C~~~w~~-~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_          16 NFFPCTCGYQICRFCWHRIRT-DENGLCPACRKPYPE   51 (52)
T ss_dssp             TCCSSSSSCCCCHHHHHHHTT-TSCCBCTTTCCBCSC
T ss_pred             eEEecCCCCccchHHHHHHHh-hcCCCCCccCCcCCC
Confidence            345669999999999999985 345689999998753

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.34  E-value=8.2e-14  Score=83.45  Aligned_cols=35  Identities=29%  Similarity=0.697  Sum_probs=30.4

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCcccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVD   41 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~   41 (88)
                      +.++.++|||.||..||.+|+.  ++.+||+||+++.
T Consensus        17 ~~~~~~~C~H~Fc~~Ci~~w~~--~~~~CP~CR~~i~   51 (68)
T d1chca_          17 NYSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVE   51 (68)
T ss_dssp             SCEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCC
T ss_pred             CCcEEeCCCCcCcHHHHHHHHH--hCCcCCCCCcchH
Confidence            4567789999999999999996  4678999999875

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-11  Score=78.04  Aligned_cols=44  Identities=25%  Similarity=0.471  Sum_probs=34.9

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCC-CCCCccccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGK-KQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~-~~tCP~CR~~v~~~~~~~~   48 (88)
                      ++.++++|||.|+..||.+|+...+ ..+||+||+++..+++..|
T Consensus        32 ~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n   76 (103)
T d1jm7a_          32 KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES   76 (103)
T ss_dssp             SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred             CCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcC
Confidence            3567789999999999999996432 3589999999987766544

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.13  E-value=6.7e-12  Score=73.15  Aligned_cols=32  Identities=16%  Similarity=0.501  Sum_probs=27.4

Q ss_pred             CCCcCcHhhHHHHHhcCCCCCCcccccccccc
Q psy11807         12 CIFIFHEFCIRGWCIVGKKQICPYCKEKVDLK   43 (88)
Q Consensus        12 C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~   43 (88)
                      |+|.||..||++|+..+++.+||+||+++..+
T Consensus        29 c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~k   60 (60)
T d1vyxa_          29 ELENVHRSCLSTWLTISRNTACQICGVVYNTR   60 (60)
T ss_dssp             GGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred             CCCEEcHHHHHHHHhhCCCCCCcccCCeeecC
Confidence            46999999999999766678999999987653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=5e-12  Score=73.24  Aligned_cols=38  Identities=11%  Similarity=0.129  Sum_probs=31.7

Q ss_pred             eeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          7 TCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         7 ~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      +....|||+|+.+||.+|+.  ++++||+||++++.+++.
T Consensus        14 v~~~~cGh~fc~~cI~~~l~--~~~~CP~c~~~l~~~dLi   51 (56)
T d2baya1          14 VLSPKSRTIFEKSLLEQYVK--DTGNDPITNEPLSIEEIV   51 (56)
T ss_dssp             EEETTTTEEEEHHHHHHHHH--HHSBCTTTCCBCCGGGCE
T ss_pred             CccCCCCCcccHHHHHHHHh--hccCCCccCCcCCHHhce
Confidence            34447999999999999996  467899999999887764

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=2.4e-11  Score=76.44  Aligned_cols=42  Identities=19%  Similarity=0.247  Sum_probs=34.6

Q ss_pred             CCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccc
Q psy11807          4 DIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMF   46 (88)
Q Consensus         4 ~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~   46 (88)
                      -...+.++|||.|...||.+|++ .++.+||+||.++...++.
T Consensus        33 ~~~pv~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          33 LADPVETSCKHLFCRICILRCLK-VMGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             CSSEEECTTSCEEEHHHHHHHHH-HTCSBCTTTCCBCCGGGCB
T ss_pred             hhcceecCCCChhhHHHHHHHHh-hCCCcCcccCCCCChhhcc
Confidence            35678899999999999999996 3456899999998776654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.4e-11  Score=71.91  Aligned_cols=37  Identities=16%  Similarity=0.315  Sum_probs=30.4

Q ss_pred             CCCceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccc
Q psy11807          3 NDIMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKL   44 (88)
Q Consensus         3 ~~e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~   44 (88)
                      .-...+.++|||.||..||++|     +.+||+||+++....
T Consensus        15 ~~~~p~~lpCgH~fC~~Ci~~~-----~~~CP~Cr~~~~~~~   51 (56)
T d1bora_          15 EAKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPLGA   51 (56)
T ss_dssp             SCBCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSCCS
T ss_pred             ccCCCEEecCCCHHhHHHHHcC-----CCcCcCCCCcccCCC
Confidence            3345678999999999999876     467999999987654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.1e-10  Score=73.16  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=28.9

Q ss_pred             ecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          9 KTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         9 ~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ..+|||.|+..||.+|+.    .+||.||+++...++..|
T Consensus        38 ~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~l~~n   73 (97)
T d1jm7b_          38 LGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLKIN   73 (97)
T ss_dssp             CCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCCCC
T ss_pred             eCCCCCchhHHHHHHHHh----ccccccCCcCchhhCccc
Confidence            348999999999999972    359999999877665443

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=4.2e-10  Score=68.36  Aligned_cols=42  Identities=12%  Similarity=0.091  Sum_probs=34.7

Q ss_pred             ceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          6 MTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         6 ~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ..+.++|||+|...||.+|+.. .+.+||.||+++...++..|
T Consensus        19 dPv~~~cGhtfc~~ci~~~l~~-~~~~cP~c~~~l~~~~l~pN   60 (80)
T d2c2la2          19 EPCITPSGITYDRKDIEEHLQR-VGHFNPVTRSPLTQEQLIPN   60 (80)
T ss_dssp             SEEECSSCCEEETTHHHHHHHH-TCSSCTTTCCCCCGGGCEEC
T ss_pred             hhcccCCcCeecHHHHHHHHhc-CCccCCCccccccccccccH
Confidence            4568899999999999999963 45689999999887766554

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=1.1e-09  Score=66.02  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=35.6

Q ss_pred             CceeecCCCCcCcHhhHHHHHhcCCCCCCccccccccccccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVN   48 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~   48 (88)
                      ...+.++|||.|...||.+|+.. ...+||.||.++..+++..|
T Consensus        19 ~dPV~~~cgh~fc~~ci~~~~~~-~~~~cP~~~~~l~~~~l~pN   61 (78)
T d1t1ha_          19 KDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTPN   61 (78)
T ss_dssp             SSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEEC
T ss_pred             hCceEccCCCcchHHHHHHHHHH-CCCCCCcccccCCcccccch
Confidence            34567899999999999999953 45689999999988777665

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.3e-08  Score=60.23  Aligned_cols=42  Identities=10%  Similarity=0.046  Sum_probs=34.0

Q ss_pred             ceeecCCC-CcCcHhhHHHHHhcCCCCCCcccccccccccccccC
Q psy11807          6 MTCKTYCI-FIFHEFCIRGWCIVGKKQICPYCKEKVDLKLMFVNL   49 (88)
Q Consensus         6 ~~~~L~C~-H~FH~~CI~~Wl~~~~~~tCP~CR~~v~~~~~~~~p   49 (88)
                      ..+.++|| |.|-..||.+|+.  ++.+||.||+++...++..|+
T Consensus        34 dPV~~~~~~~ty~r~~I~~~l~--~~~~~P~~~~~l~~~~L~pN~   76 (98)
T d1wgma_          34 DPVVLPSSRVTVDRSTIARHLL--SDQTDPFNRSPLTMDQIRPNT   76 (98)
T ss_dssp             SEEECTTTCCEEEHHHHHHHTT--TSCBCTTTCSBCCTTTSEECH
T ss_pred             HHHhcccccchhhHHHHHHHHH--hcCCcccccccccchhhcchH
Confidence            45677776 5899999999984  578999999999887776653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.9e-06  Score=50.61  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=24.8

Q ss_pred             CceeecCCCCcCcHhhHHHHHhc----C--CCCCCccccc
Q psy11807          5 IMTCKTYCIFIFHEFCIRGWCIV----G--KKQICPYCKE   38 (88)
Q Consensus         5 e~~~~L~C~H~FH~~CI~~Wl~~----~--~~~tCP~CR~   38 (88)
                      +.+..++|||.|+.+|++.|++.    +  ..-+||.|+-
T Consensus        19 ~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_          19 QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             ceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            33455689999999999999953    1  1236998654