Psyllid ID: psy11816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MFAGFGIMFADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGERARVTCCAHVTTKNNPPPGLQSHVKSVRLTLRMTEYSPGIAFKHAQKSTKFQNEFLDPSLKNIIVVVVV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHccccEEcccccccccccEEEcccccccccccHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccEEEEEEEEEEcccccccHHHHHHHHHHHcccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccHccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccHHcccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHcccccccccccccccEEEEEEEcccccccHHHHHccHccHHHHHccccccccEEEEEEc
Coil and Loop (DISEMBL)
mfagfgimFADLAIMVADLAIMSADLaimfphsrpestfwifgkptyidtHADLAIMFADLAIMfadsrpestfwifgkptyiethmfefndicwdkcqsdkvdsktetclTNCVNRFIDVSLFITNRYGQLlsksmegeraRVTCCAhvttknnpppglqshvKSVRLTLRMteyspgiafkhaqkstkfqnefldpslknIIVVVVV
Flexible Loop (DISEMBL)
MFAGFGIMFADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGERARVTCCAHvttknnpppglqshVKSVRLTLRMTEYSPGIAFKHAQKSTKFqnefldpslknIIVVVVV
Low Complexity Region (SEG)
MFAGFGIMFADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGERARVTCCAHVTTKNNPPPGLQSHVKSVRLTLRMTEYSPGIAFKHAQKSTKFQNEFLDPSLKNIIVVVVV
Disordered region (IsUnstruct)
**AGFGIMFADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGERARVTCCAHVTT*************SVRLTLRMTEYSPGIAFKHAQKSTKFQNEFLDPSLKNIIVVVV*
Disordered Region (DISOPRED)
**AGFGIMFADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYID***************************************EFNDICW**************CLTNCVNRFIDVSLFI**************************************VKSVRLTLRMTEYSPGIAFKHAQKSTKFQNEFLDPSLKNIIVVVVV
Disordered Region (DISEMBL)
MFAGFGIMFADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGERARVTCCAHVTTKNNPPPGLQSHVKSVRLTLRMTEYSPGIAFKHAQKSTKFQNEFLDPSLKNIIVVVVV
Disordered Region (DISPRO)
*FAGFGIMFADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGERARVTCCAHVTTKNNPPPGLQSHVKSVRLTLRMTEYSPGIAFKHAQKSTKFQNEFLDPSLKNIIVVVVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFAGFGIMFADLAIMVADLAIMSADLAIMFPHSRPESTFWIFGKPTYIDTHADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGERARVTCCAHVTTKNNPPPGLQSHVKSVRLTLRMTEYSPGIAFKHAQKSTKFQNEFLDPSLKNIIVVVVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q9Y1A3	88	Mitochondrial import inne	yes	N/A	0.354	0.840	0.441	2e-12
Q66L32	94	Mitochondrial import inne	N/A	N/A	0.244	0.542	0.5	5e-10
Q9Y5J9	83	Mitochondrial import inne	no	N/A	0.224	0.566	0.48	1e-08
P62078	83	Mitochondrial import inne	yes	N/A	0.224	0.566	0.48	2e-08
P62077	83	Mitochondrial import inne	yes	N/A	0.224	0.566	0.48	2e-08
Q3SZ93	83	Mitochondrial import inne	yes	N/A	0.224	0.566	0.46	2e-08
Q6DEM5	90	Mitochondrial import inne	no	N/A	0.205	0.477	0.5	1e-06
Q90YI5	90	Mitochondrial import inne	N/A	N/A	0.315	0.733	0.376	2e-06
Q9WVA1	97	Mitochondrial import inne	no	N/A	0.205	0.443	0.478	2e-06
Q9WVA2	97	Mitochondrial import inne	no	N/A	0.205	0.443	0.478	3e-06

>sp|Q9Y1A3|TIM8_DROME Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melanogaster GN=Tim8 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 67  DSRPESTFWIFGKPTYIETHMFEFNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSL 123
           D   +    I  +   +   + EFN+ICW+KC    S K+D  TETCL+NCV+RFID SL
Sbjct: 11  DKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGKPSTKLDHATETCLSNCVDRFIDTSL 70

Query: 124 FITNRYGQLLSKSMEGE 140
            IT R+ Q+L K   G+
Sbjct: 71  LITQRFAQMLQKRGGGD 87

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The Tim8-Tim13 complex mediates the import of some proteins while the predominant Tim9-Tim10 70 kDa complex mediates the import of much more proteins.
Drosophila melanogaster (taxid: 7227)

>sp|Q66L32|TIM8A_XENLA Mitochondrial import inner membrane translocase subunit Tim8 A OS=Xenopus laevis GN=timm8a PE=3 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 3/54 (5%)

Query: 86  HMFEFNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKS 136
            +  F D+CWDKC     +K+DS+TE+CL +CV+RFID +L ITNR+ Q++ K 
Sbjct: 39  QVHNFMDVCWDKCIDRPGNKLDSRTESCLVSCVDRFIDTTLSITNRFAQIVQKG 92

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of some proteins while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Xenopus laevis (taxid: 8355)

>sp|Q9Y5J9|TIM8B_HUMAN Mitochondrial import inner membrane translocase subunit Tim8 B OS=Homo sapiens GN=TIMM8B PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 38/50 (76%), Gaps = 3/50 (6%)

Query: 90  FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKS 136
           F ++CWDKC     +++DS+TE CL++CV+RFID +L IT+R+ Q++ K 
Sbjct: 32  FMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKG 81

Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Homo sapiens (taxid: 9606)

>sp|P62078|TIM8B_RAT Mitochondrial import inner membrane translocase subunit Tim8 B OS=Rattus norvegicus GN=Timm8b PE=3 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 90  FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKS 136
           F ++CWDKC      ++DS+TE CL++CV+RFID +L IT R+ Q++ K 
Sbjct: 32  FMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQKG 81

Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Rattus norvegicus (taxid: 10116)

>sp|P62077|TIM8B_MOUSE Mitochondrial import inner membrane translocase subunit Tim8 B OS=Mus musculus GN=Timm8b PE=3 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 90  FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKS 136
           F ++CWDKC      ++DS+TE CL++CV+RFID +L IT R+ Q++ K 
Sbjct: 32  FMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQKG 81

Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Mus musculus (taxid: 10090)

>sp|Q3SZ93|TIM8B_BOVIN Mitochondrial import inner membrane translocase subunit Tim8 B OS=Bos taurus GN=TIMM8B PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 38/50 (76%), Gaps = 3/50 (6%)

Query: 90  FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKS 136
           F ++CWDKC     +++DS+TE CL++CV+RFID +L IT+R+ Q++ + 
Sbjct: 32  FMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQRG 81

Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Bos taurus (taxid: 9913)

>sp|Q6DEM5|TIM8A_DANRE Mitochondrial import inner membrane translocase subunit Tim8 A OS=Danio rerio GN=timm8a PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 89  EFNDICWDKCQSD---KVDSKTETCLTNCVNRFIDVSLFITNRYGQ 131
           +  ++CW+KC      K+DS+TE C  NCV RFID S FI NR  Q
Sbjct: 31  QMTEVCWEKCMDKPGPKLDSRTEVCFVNCVERFIDTSQFILNRLEQ 76

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of some proteins while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Danio rerio (taxid: 7955)

>sp|Q90YI5|TIM8A_TAKRU Mitochondrial import inner membrane translocase subunit Tim8 A OS=Takifugu rubripes GN=timm8a PE=3 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 66  ADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSD---KVDSKTETCLTNCVNRFIDVS 122
           AD + +    I  +    +  +    ++CWDKC      K+DS+ E C  NCV RFID S
Sbjct: 8   ADPQLQQFIEIESQKQRFQQLVHHMTEVCWDKCMDKPGPKLDSRAEMCFVNCVERFIDTS 67

Query: 123 LFITNRYGQ 131
            FI NR  Q
Sbjct: 68  QFILNRLEQ 76

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of some proteins while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Takifugu rubripes (taxid: 31033)

>sp|Q9WVA1|TIM8A_RAT Mitochondrial import inner membrane translocase subunit Tim8 A OS=Rattus norvegicus GN=Timm8a PE=1 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 89  EFNDICWDKCQSD---KVDSKTETCLTNCVNRFIDVSLFITNRYGQ 131
           +  ++CW+KC      K+DS+ E C  NCV RFID S FI NR  Q
Sbjct: 38  QMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQ 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of proteins such as TIMM23, SLC25A12/ARALAR1 and SLC25A13/ARALAR2, while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9WVA2|TIM8A_MOUSE Mitochondrial import inner membrane translocase subunit Tim8 A OS=Mus musculus GN=Timm8a1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 89  EFNDICWDKCQSD---KVDSKTETCLTNCVNRFIDVSLFITNRYGQ 131
           +  ++CW+KC      K+DS+ E C  NCV RFID S FI NR  Q
Sbjct: 38  QMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQ 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of proteins such as TIMM23, SLC25A12/ARALAR1 and SLC25A13/ARALAR2, while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
110757341	86	PREDICTED: mitochondrial import inner me	0.282	0.686	0.629	2e-14
340714941	90	PREDICTED: mitochondrial import inner me	0.349	0.811	0.5	4e-14
91080627	92	PREDICTED: similar to translocase of inn	0.406	0.923	0.465	7e-14
350417131	90	PREDICTED: mitochondrial import inner me	0.349	0.811	0.5	8e-14
157112310	89	mitochondrial inner membrane protein tra	0.291	0.685	0.578	1e-13
332374588	93	unknown [Dendroctonus ponderosae]	0.406	0.913	0.454	2e-13
383852465	90	PREDICTED: mitochondrial import inner me	0.392	0.911	0.447	4e-13
118785374	90	AGAP010606-PA [Anopheles gambiae str. PE	0.263	0.611	0.603	2e-12
242009508	105	mitochondrial import inner membrane tran	0.330	0.657	0.520	3e-12
307178916	93	Mitochondrial import inner membrane tran	0.287	0.645	0.523	3e-12

>gi|110757341|ref|XP_001122230.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8 [Apis mellifera] gi|380011293|ref|XP_003689743.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8-like [Apis florea]

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 47/62 (75%), Gaps = 3/62 (4%)

Query: 79  KPTYIETHMFEFNDICWDKCQSD---KVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
           +   I+  + EFNDICWDKC      K+DS+TETCLTNCV+RFIDVSL ITNR+ QLL K
Sbjct: 25  QKALIQAQIHEFNDICWDKCIDKPGVKLDSRTETCLTNCVDRFIDVSLLITNRFAQLLQK 84

Query: 136 SM 137
           S+
Sbjct: 85  SV 86

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714941|ref|XP_003395980.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8-like [Bombus terrestris]

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 65  FADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSD---KVDSKTETCLTNCVNRFIDV 121
            A++  +  F    +   I+  + EFNDICW+KC      K+DS+TETCL+NCV+RFIDV
Sbjct: 12  LAEAELQEFFMAEKQKAQIQAQIHEFNDICWEKCVDKPGVKLDSRTETCLSNCVDRFIDV 71

Query: 122 SLFITNRYGQLLSKSM 137
           SL ITNR+ Q+L KS+
Sbjct: 72  SLLITNRFAQILQKSV 87

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080627|ref|XP_974324.1| PREDICTED: similar to translocase of inner mitochondrial membrane 8 homolog b [Tribolium castaneum] gi|270005506|gb|EFA01954.1| hypothetical protein TcasGA2_TC007570 [Tribolium castaneum]

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 52  ADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKC---QSDKVDSKTE 108
           +D    F+       D   +    +  +       + EFND CWDKC     +K+DSKTE
Sbjct: 2   SDFGDSFSSGEHKAGDKELQEFLMVEKQKAQFNAQIHEFNDFCWDKCVEKTGNKLDSKTE 61

Query: 109 TCLTNCVNRFIDVSLFITNRYGQLLSKS 136
           TCLTNCV+RFIDVSL ITNR+ QLL KS
Sbjct: 62  TCLTNCVDRFIDVSLLITNRFAQLLQKS 89

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417131|ref|XP_003491271.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8-like [Bombus impatiens]

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 65  FADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSD---KVDSKTETCLTNCVNRFIDV 121
             +S  +  F    +   I+  + EFNDICW+KC      K+DS+TETCL+NCV+RFIDV
Sbjct: 12  LTESELQEFFMAEKQKAQIQAQIHEFNDICWEKCVDKPGVKLDSRTETCLSNCVDRFIDV 71

Query: 122 SLFITNRYGQLLSKSM 137
           SL ITNR+ Q+L KS+
Sbjct: 72  SLLITNRFAQILQKSV 87

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112310|ref|XP_001657489.1| mitochondrial inner membrane protein translocase, 8kD-subunit, putative [Aedes aegypti] gi|94468592|gb|ABF18145.1| mitochondrial import inner membrane translocase subunit TIM8 [Aedes aegypti] gi|108883762|gb|EAT47987.1| AAEL000941-PA [Aedes aegypti]

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 79  KPTYIETHMFEFNDICWDKCQ---SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
           +   +   + EFNDICWDKC      K+DS+TETCL NCVNRFID SLFIT R+ Q L K
Sbjct: 25  QKAQLSAQIHEFNDICWDKCMDKPGSKLDSRTETCLNNCVNRFIDTSLFITTRFAQTLQK 84

Query: 136 SMEG 139
           S  G
Sbjct: 85  SQSG 88

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374588|gb|AEE62435.1| unknown [Dendroctonus ponderosae]

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 52  ADLAIMFADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKC---QSDKVDSKTE 108
           +D     ++L+    D   +    +  +       + EFND CWDKC     +K+DS+TE
Sbjct: 3   SDFGDFSSELSSKGDDKELQEFLMVEKQKAQFNAQIHEFNDFCWDKCVEKPGNKLDSRTE 62

Query: 109 TCLTNCVNRFIDVSLFITNRYGQLLSKS 136
           TCLTNCV+RFIDVSL ITNR+ QLL KS
Sbjct: 63  TCLTNCVDRFIDVSLLITNRFAQLLQKS 90

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852465|ref|XP_003701747.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8-like [Megachile rotundata]

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 58  FADLAIMFADSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSD---KVDSKTETCLTNC 114
             D  I   DS  +       +    +  + EFNDICW+KC      K+DS+TETCL+NC
Sbjct: 6   LEDTKIPGVDSELQEFVQAEKQKAQFQAQILEFNDICWEKCVDKPGVKLDSRTETCLSNC 65

Query: 115 VNRFIDVSLFITNRYGQLLSKSMEG 139
           V+RFIDVS  ITNR+GQ+L + +E 
Sbjct: 66  VDRFIDVSFLITNRFGQVLQRVLEN 90

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118785374|ref|XP_314568.3| AGAP010606-PA [Anopheles gambiae str. PEST] gi|116128054|gb|EAA09982.3| AGAP010606-PA [Anopheles gambiae str. PEST]

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 3/58 (5%)

Query: 83  IETHMFEFNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSM 137
           +   + EFNDICWDKC    S+K+DS+TETCL NCVNRF+D SL IT R+ Q L KS 
Sbjct: 31  LSAQIHEFNDICWDKCVEKPSNKLDSRTETCLANCVNRFVDTSLLITQRFAQSLQKSQ 88

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009508|ref|XP_002425526.1| mitochondrial import inner membrane translocase subunit Tim8, putative [Pediculus humanus corporis] gi|212509395|gb|EEB12788.1| mitochondrial import inner membrane translocase subunit Tim8, putative [Pediculus humanus corporis]

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 67  DSRPESTFWIFGKPTYIETHMFEFNDICWDKCQSDK----VDSKTETCLTNCVNRFIDVS 122
           D   +    I  +       + EFND CW+KC SDK    +D KTETCL NCV+RFIDVS
Sbjct: 29  DQELQDFLMIEKQKAQFNAQIHEFNDFCWEKCISDKPKSKLDGKTETCLNNCVDRFIDVS 88

Query: 123 LFITNRYGQLLSK 135
           LFITNRY   L K
Sbjct: 89  LFITNRYASYLQK 101

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178916|gb|EFN67438.1| Mitochondrial import inner membrane translocase subunit Tim8 [Camponotus floridanus]

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 3/63 (4%)

Query: 79  KPTYIETHMFEFNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
           +   +   + EFNDICWDKC      K+D +TETC+ NCVNRFIDVS+FIT+R+GQ ++ 
Sbjct: 30  QKAQLNAQIHEFNDICWDKCVDKPGSKLDGRTETCINNCVNRFIDVSVFITSRFGQYINA 89

Query: 136 SME 138
           ++E
Sbjct: 90  NVE 92

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
FB|FBgn0027359	88	Tim8 "Tim8" [Drosophila melano	0.277	0.659	0.524	2.7e-13
ZFIN|ZDB-GENE-031019-1	95	timm8b "translocase of inner m	0.248	0.547	0.527	2.4e-12
UNIPROTKB|J9P4N5	83	TIMM8B "Uncharacterized protei	0.220	0.554	0.489	4.1e-10
UNIPROTKB|G3XAN8	98	TIMM8B "Translocase of inner m	0.220	0.469	0.489	4.1e-10
UNIPROTKB|Q9Y5J9	83	TIMM8B "Mitochondrial import i	0.220	0.554	0.489	4.1e-10
UNIPROTKB|F2Z5V7	83	TIMM8B "Uncharacterized protei	0.220	0.554	0.489	4.1e-10
MGI|MGI:1353424	83	Timm8b "translocase of inner m	0.220	0.554	0.489	6.6e-10
RGD|619840	83	Timm8b "translocase of inner m	0.220	0.554	0.489	6.6e-10
UNIPROTKB|Q3SZ93	83	TIMM8B "Mitochondrial import i	0.220	0.554	0.469	8.4e-10
UNIPROTKB|F1NIC5	96	TIMM8A "Uncharacterized protei	0.248	0.541	0.482	9.7e-09

FB|FBgn0027359 Tim8 "Tim8" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/61 (52%), Positives = 42/61 (68%)

Query:    83 IETHMFEFNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEG 139
             +   + EFN+ICW+KC    S K+D  TETCL+NCV+RFID SL IT R+ Q+L K   G
Sbjct:    27 VNAQIHEFNEICWEKCIGKPSTKLDHATETCLSNCVDRFIDTSLLITQRFAQMLQKRGGG 86

Query:   140 E 140
             +
Sbjct:    87 D 87

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;NAS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

ZFIN|ZDB-GENE-031019-1 timm8b "translocase of inner mitochondrial membrane 8 homolog B (yeast)" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query:    84 ETHMFEFNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             +  +  F D+CWDKC    S K+DS+TETCL +CV RFID +L ITNR+ Q++ K
Sbjct:    38 QAQVHNFTDVCWDKCVDKPSSKLDSRTETCLVSCVERFIDTTLTITNRFTQMVQK 92

GO:0006810 "transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|J9P4N5 TIMM8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 24/49 (48%), Positives = 38/49 (77%)

Query:    90 FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             F ++CWDKC     +++DS+TE CL++CV+RFID +L IT+R+ Q++ K
Sbjct:    32 FMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQK 80

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|G3XAN8 TIMM8B "Translocase of inner mitochondrial membrane 8 homolog B (Yeast)" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 24/49 (48%), Positives = 38/49 (77%)

Query:    90 FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             F ++CWDKC     +++DS+TE CL++CV+RFID +L IT+R+ Q++ K
Sbjct:    47 FMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQK 95

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9Y5J9 TIMM8B "Mitochondrial import inner membrane translocase subunit Tim8 B" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 24/49 (48%), Positives = 38/49 (77%)

Query:    90 FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             F ++CWDKC     +++DS+TE CL++CV+RFID +L IT+R+ Q++ K
Sbjct:    32 FMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQK 80

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0008270 "zinc ion binding" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=TAS

GO:0072321 "chaperone-mediated protein transport" evidence=TAS

UNIPROTKB|F2Z5V7 TIMM8B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 24/49 (48%), Positives = 38/49 (77%)

Query:    90 FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             F ++CWDKC     +++DS+TE CL++CV+RFID +L IT+R+ Q++ K
Sbjct:    32 FMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQK 80

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1353424 Timm8b "translocase of inner mitochondrial membrane 8B" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query:    90 FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             F ++CWDKC      ++DS+TE CL++CV+RFID +L IT R+ Q++ K
Sbjct:    32 FMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQK 80

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|619840 Timm8b "translocase of inner mitochondrial membrane 8 homolog b (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query:    90 FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             F ++CWDKC      ++DS+TE CL++CV+RFID +L IT R+ Q++ K
Sbjct:    32 FMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQK 80

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q3SZ93 TIMM8B "Mitochondrial import inner membrane translocase subunit Tim8 B" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 23/49 (46%), Positives = 38/49 (77%)

Query:    90 FNDICWDKC---QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             F ++CWDKC     +++DS+TE CL++CV+RFID +L IT+R+ Q++ +
Sbjct:    32 FMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQR 80

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1NIC5 TIMM8A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/56 (48%), Positives = 33/56 (58%)

Query:    89 EFNDICWDKCQSD---KVDSKTETCLTNCVNRFIDVSLFITNRYGQLL-SKSMEGE 140
             +  ++CW+KC      K+DS+ ETC  NCV RFID S FI NR  Q   SKS   E
Sbjct:    37 QMTELCWEKCMDKPGPKLDSRAETCFVNCVERFIDTSQFILNRLEQTQKSKSAFSE 92

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	209
pfam02953	66	pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc fin	5e-12

>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger

 Score = 58.4 bits (142), Expect = 5e-12
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 90  FNDICWDKC----QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL 132
             + C+ KC        +    E+CL  CV +++D +  ++ R  + 
Sbjct: 20  LTENCFKKCVTKFPGSSLSKGEESCLDRCVEKYLDANNRVSKRLQER 66

Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein TIMM8A. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import. Members of this family seem to be localised to the mitochondrial intermembrane space. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG3489|consensus	86		99.89
KOG1733|consensus	97		99.86
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	99.81
KOG3480|consensus	90		99.64
KOG3479|consensus	83		99.61
PF05811	131	DUF842: Eukaryotic protein of unknown function (DU	92.87
KOG3377|consensus	143		91.63

>KOG3489|consensus

Probab=99.89  E-value=2.1e-23  Score=159.18  Aligned_cols=76  Identities=43%  Similarity=0.807  Sum_probs=68.8

Q ss_pred             hhcCCCCCChHHHHHH--HHhcHHHHHHHHHHHHHHHHHhcc---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11816         60 DLAIMFADSRPESTFW--IFGKPTYIETHMFEFNDICWDKCQ---SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLS  134 (209)
Q Consensus        60 dL~~Ls~dqq~EL~q~--~EqQ~aq~QelvnkLTE~CFdKCV---sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~q  134 (209)
                      ++++| +.+.+|++++  +|+|++++|+++|++|+.||+|||   +++||++|++||+|||+||||++.+|.+||+++.+
T Consensus         3 ~~a~l-~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~   81 (86)
T KOG3489|consen    3 DLAAL-DANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEKPGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQ   81 (86)
T ss_pred             chhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45666 5667788886  588999999999999999999999   99999999999999999999999999999999887


Q ss_pred             cc
Q psy11816        135 KS  136 (209)
Q Consensus       135 qe  136 (209)
                      ..
T Consensus        82 ~~   83 (86)
T KOG3489|consen   82 GH   83 (86)
T ss_pred             cc
Confidence            66

>KOG1733|consensus

Probab=99.86  E-value=8.5e-22  Score=152.76  Aligned_cols=82  Identities=16%  Similarity=0.331  Sum_probs=71.0

Q ss_pred             hhhcCCCCCChH-HHHHHH--HhcHHHHHHHHHHHHHHHHHhcc---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11816         59 ADLAIMFADSRP-ESTFWI--FGKPTYIETHMFEFNDICWDKCQ---SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL  132 (209)
Q Consensus        59 ~dL~~Ls~dqq~-EL~q~~--EqQ~aq~QelvnkLTE~CFdKCV---sssLsskEesCLsNCVdKFmDts~~VsqRfqe~  132 (209)
                      ...+..+.+..+ +++.++  |.+++++|+|+++|+|+||+|||   |++|+++|++||++|++||||+|+.|++.|..+
T Consensus         8 ~~g~~~s~~~~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~PGssl~~~e~~Cis~CmdRyMdawniVSrty~sR   87 (97)
T KOG1733|consen    8 QKGGAGSSKTTEGELMNQVKQQLAVANAQELVSKISEKCFDKCITKPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISR   87 (97)
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555 777774  55788999999999999999999   999999999999999999999999999999999


Q ss_pred             HhccccCC
Q psy11816        133 LSKSMEGE  140 (209)
Q Consensus       133 ~qqe~~g~  140 (209)
                      +|+++..+
T Consensus        88 lQre~a~~   95 (97)
T KOG1733|consen   88 LQREQASG   95 (97)
T ss_pred             HHHHHHcc
Confidence            99988654

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.81  E-value=1.1e-19  Score=128.38  Aligned_cols=59  Identities=29%  Similarity=0.678  Sum_probs=53.7

Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11816         74 FWIFGKPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL  132 (209)
Q Consensus        74 q~~EqQ~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~  132 (209)
                      .++|+|+++++++++++++.||+|||    +++|+++|++||+||++||+|++++|+++|+++
T Consensus         4 ~~~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~   66 (66)
T PF02953_consen    4 LMQEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            35678999999999999999999999    899999999999999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG3480|consensus

Probab=99.64  E-value=6.5e-16  Score=118.91  Aligned_cols=68  Identities=12%  Similarity=0.337  Sum_probs=61.2

Q ss_pred             ChHHHHHHHHhcHHHHHHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11816         68 SRPESTFWIFGKPTYIETHMFEFNDICWDKCQ-----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKS  136 (209)
Q Consensus        68 qq~EL~q~~EqQ~aq~QelvnkLTE~CFdKCV-----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe  136 (209)
                      +++.++ .+|.++..+.++||+|+..|++|||     +++|+++|..||+|||.||+|++..|+++++++.+..
T Consensus        10 ~~~k~q-~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~~~   82 (90)
T KOG3480|consen   10 DQQKAQ-MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMGQGD   82 (90)
T ss_pred             CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            344444 7799999999999999999999999     8999999999999999999999999999999876543

>KOG3479|consensus

Probab=99.61  E-value=1.7e-15  Score=115.40  Aligned_cols=61  Identities=18%  Similarity=0.501  Sum_probs=57.0

Q ss_pred             HhcHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy11816         77 FGKPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSM  137 (209)
Q Consensus        77 EqQ~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~  137 (209)
                      ..++.++..+||++||+||..||    .++|+++|++|+.+|++||+..+++|++||++.+....
T Consensus         5 ~k~lkDFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~~~   69 (83)
T KOG3479|consen    5 IKQLKDFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAALN   69 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35888999999999999999999    99999999999999999999999999999999887653

>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function

Probab=92.87  E-value=0.64  Score=37.57  Aligned_cols=58  Identities=17%  Similarity=0.349  Sum_probs=43.2

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHhcc-CCCCCchh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11816         75 WIFGKPTYIETHMFEFNDICWDKCQ-SDKVDSKT-------ETCLTNCVNRFIDVSLFITNRYGQL  132 (209)
Q Consensus        75 ~~EqQ~aq~QelvnkLTE~CFdKCV-sssLsskE-------esCLsNCVdKFmDts~~VsqRfqe~  132 (209)
                      .++.++.+||+-+++=+-.|.+|=- .-..++.|       +.|...|+++|+..--.+.+|+.+.
T Consensus        65 ~vq~El~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~~  130 (131)
T PF05811_consen   65 YVQNELEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKKS  130 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence            4678888999888877777777643 11123333       6799999999999999999988753

The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.

>KOG3377|consensus

Probab=91.63  E-value=1.2  Score=37.69  Aligned_cols=63  Identities=17%  Similarity=0.332  Sum_probs=49.2

Q ss_pred             HHHHHhcHHHHHHHHHHHHHHHHHhccCCC--------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11816         73 TFWIFGKPTYIETHMFEFNDICWDKCQSDK--------VDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK  135 (209)
Q Consensus        73 ~q~~EqQ~aq~QelvnkLTE~CFdKCVsss--------LsskEesCLsNCVdKFmDts~~VsqRfqe~~qq  135 (209)
                      ++..+.++.+||+-+++=+-.|-+|=-.+.        .-.-.+.|+++|++.++.+---+.+++.+.+..
T Consensus        71 Q~~~~~El~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~al~~  141 (143)
T KOG3377|consen   71 QQYVQSELGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEALSI  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            334678999999999998888888764222        233467899999999999999999998887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
3cjh_B	64	Tim8-Tim13 Complex Length = 64		2e-05

>pdb|3CJH|B Chain B, Tim8-Tim13 Complex Length = 64

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 83  IETHMFEFNDICWDKC----QSDKVDSKTETCLTNCVNRFIDVSLFITN 127
           ++  + +F +IC+ KC        + S+ E CL+NCVNRF+D ++ I N
Sbjct: 10  VQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVN 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
3cjh_B	64	Mitochondrial import inner membrane translocase S	2e-15
3cjh_A	64	Mitochondrial import inner membrane translocase S	3e-07
3dxr_A	89	Mitochondrial import inner membrane translocase su	8e-07
2bsk_B	90	Mitochondrial import inner membrane translocase su	2e-05
3dxr_B	95	Mitochondrial import inner membrane translocase su	1e-04
2bsk_A	89	Mitochondrial import inner membrane translocase su	5e-04

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 67.2 bits (164), Expect = 2e-15
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 89  EFNDICWDKC----QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL 132
           +F +IC+ KC        + S+ E CL+NCVNRF+D ++ I N     
Sbjct: 16  QFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 7/48 (14%), Positives = 23/48 (47%)

Query: 90  FNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSM 137
            ++ C++KC +    ++ + C+  C+ +++     I+  Y   +  + 
Sbjct: 12  ISENCFEKCLTSPYATRNDACIDQCLAKYMRSWNVISKAYISRIQNAS 59

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 89

 Score = 44.6 bits (105), Expect = 8e-07
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 92  DICWDKCQSD----KVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEG 139
           + C+  C +D    K+ +K +TC+  C  +F+  S  +  R+ +  +   +G
Sbjct: 35  ERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAALGQG 86

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 90

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 85  THMF-EFNDICWDKC-----QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL 132
             M+      C  KC     +  ++      CL  CV++++D+   +  +  +L
Sbjct: 19  ADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTEL 72

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 95

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 92  DICWDKCQSDKVDSKT-----ETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGER 141
           + C+ KC +             +CL  CV ++ + ++ +     ++        +
Sbjct: 40  NNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFNAAGK 94

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 89

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 92  DICWDKCQSD----KVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEG 139
           + C+  C  D    +V  +  TC  +C+ +++ ++  I+ R+ +   +  E 
Sbjct: 26  ETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEA 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3dxr_A	89	Mitochondrial import inner membrane translocase su	99.91
3cjh_B	64	Mitochondrial import inner membrane translocase S	99.85
3dxr_B	95	Mitochondrial import inner membrane translocase su	99.85
2bsk_B	90	Mitochondrial import inner membrane translocase su	99.84
3cjh_A	64	Mitochondrial import inner membrane translocase S	99.84
2bsk_A	89	Mitochondrial import inner membrane translocase su	99.81

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.3e-25  Score=164.70  Aligned_cols=81  Identities=15%  Similarity=0.318  Sum_probs=60.6

Q ss_pred             hhhcCCCCCChHHHHHHH-HhcHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11816         59 ADLAIMFADSRPESTFWI-FGKPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLL  133 (209)
Q Consensus        59 ~dL~~Ls~dqq~EL~q~~-EqQ~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~  133 (209)
                      +|+++|++.+++++++++ |.|+++++++||+||++||+|||    +++|+++|++||+|||+||||++++|++||++.+
T Consensus         1 ~~m~~l~~~~~~el~~~~~e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~   80 (89)
T 3dxr_A            1 GSMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN   80 (89)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999875 56999999999999999999999    8999999999999999999999999999999988


Q ss_pred             hccccC
Q psy11816        134 SKSMEG  139 (209)
Q Consensus       134 qqe~~g  139 (209)
                      ++.++.
T Consensus        81 ~~~~~~   86 (89)
T 3dxr_A           81 AALGQG   86 (89)
T ss_dssp             CC----
T ss_pred             HHHhhc
Confidence            776644

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=9.6e-22  Score=139.19  Aligned_cols=58  Identities=31%  Similarity=0.641  Sum_probs=53.7

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11816         75 WIFGKPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQL  132 (209)
Q Consensus        75 ~~EqQ~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~  132 (209)
                      ++|+|+++++++||+||+.||+|||    +++|+++|++||+|||+||||++++|++||+++
T Consensus         2 ~~E~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~   63 (64)
T 3cjh_B            2 EGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT   63 (64)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999    889999999999999999999999999999975

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.1e-21  Score=150.10  Aligned_cols=63  Identities=11%  Similarity=0.360  Sum_probs=56.4

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy11816         75 WIFGKPTYIETHMFEFNDICWDKCQ-----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSM  137 (209)
Q Consensus        75 ~~EqQ~aq~QelvnkLTE~CFdKCV-----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~  137 (209)
                      ++|+|+++++++||+||++||+|||     +++|+++|++||+|||+||||++++|++||+++.++.+
T Consensus        23 ~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q~~~   90 (95)
T 3dxr_B           23 AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFN   90 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6799999999999999999999999     68999999999999999999999999999999998876

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.84  E-value=2.2e-21  Score=145.66  Aligned_cols=64  Identities=16%  Similarity=0.345  Sum_probs=57.4

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy11816         75 WIFGKPTYIETHMFEFNDICWDKCQ-----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSME  138 (209)
Q Consensus        75 ~~EqQ~aq~QelvnkLTE~CFdKCV-----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~~  138 (209)
                      .+|.|+++++++||+||+.||+|||     +++|+++|++||+|||+||||++++|++||+++.++...
T Consensus        10 ~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~~e   78 (90)
T 2bsk_B           10 AAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDEE   78 (90)
T ss_dssp             ---CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999     788999999999999999999999999999999876643

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.3e-21  Score=139.52  Aligned_cols=62  Identities=11%  Similarity=0.406  Sum_probs=50.0

Q ss_pred             cHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy11816         79 KPTYIETHMFEFNDICWDKCQSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEGE  140 (209)
Q Consensus        79 Q~aq~QelvnkLTE~CFdKCVsssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~~g~  140 (209)
                      ++++++++||+||+.||+|||.+.|+++|++||+|||+||||++++|+++|++++++++.+|
T Consensus         1 ~~a~~~~l~~~lt~~Cf~kCv~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~~~~~   62 (64)
T 3cjh_A            1 AVANATELVNKISENCFEKCLTSPYATRNDACIDQCLAKYMRSWNVISKAYISRIQNASASG   62 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred             ChHHHHHHHHHHHHHHHHHHCCCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence            57899999999999999999944499999999999999999999999999999999887654

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.81  E-value=4.2e-20  Score=138.97  Aligned_cols=63  Identities=14%  Similarity=0.379  Sum_probs=56.4

Q ss_pred             HHhcHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy11816         76 IFGKPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSME  138 (209)
Q Consensus        76 ~EqQ~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~~  138 (209)
                      +.+++++++++||+||++||+|||    +++|+++|++||+|||+||||++++|++||++..++..+
T Consensus        10 q~~q~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~~~   76 (89)
T 2bsk_A           10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNE   76 (89)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788899999999999999999    889999999999999999999999999999999876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d2bska1	73	g.83.1.1 (A:13-85) Mitochondrial import inner memb	1e-11
d2bskb1	65	g.83.1.1 (B:13-77) Mitochondrial import inner memb	8e-11

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 1e-11
 Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 90  FNDICWDKCQSD----KVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSMEG 139
             + C+  C  D    +V  +  TC  +C+ +++ ++  I+ R+ +   +  E 
Sbjct: 12  LTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEA 65

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (129), Expect = 8e-11
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 85  THMFE-FNDICWDKC-----QSDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSK 135
             M+      C  KC     +  ++      CL  CV++++D+   +  +  +L  +
Sbjct: 7   ADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQ 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d2bskb1	65	Mitochondrial import inner membrane translocase su	99.83
d2bska1	73	Mitochondrial import inner membrane translocase su	99.8

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.5e-21  Score=136.47  Aligned_cols=59  Identities=15%  Similarity=0.425  Sum_probs=54.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy11816         79 KPTYIETHMFEFNDICWDKCQ-----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSM  137 (209)
Q Consensus        79 Q~aq~QelvnkLTE~CFdKCV-----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~  137 (209)
                      |++.++++||+||+.||+|||     +++|+++|++|++||++||||++++|++||+++.++++
T Consensus         2 e~~~~~~m~nklt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~~~~~   65 (65)
T d2bskb1           2 EVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDE   65 (65)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            466789999999999999999     67799999999999999999999999999999998764

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-20  Score=134.36  Aligned_cols=59  Identities=14%  Similarity=0.395  Sum_probs=55.0

Q ss_pred             cHHHHHHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy11816         79 KPTYIETHMFEFNDICWDKCQ----SDKVDSKTETCLTNCVNRFIDVSLFITNRYGQLLSKSM  137 (209)
Q Consensus        79 Q~aq~QelvnkLTE~CFdKCV----sssLsskEesCLsNCVdKFmDts~~VsqRfqe~~qqe~  137 (209)
                      |+++++.+||+||++||+|||    +++|+++|++|++|||+||+|++++|++||++.+++..
T Consensus         1 Q~kdfl~~yn~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~q~~~n   63 (73)
T d2bska1           1 QFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQN   63 (73)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999    89999999999999999999999999999999876543